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<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
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<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
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<issn pub-type="epub">1664-302X</issn>
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<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2025.1644399</article-id><article-version article-version-type="Version of Record" vocab="NISO-RP-8-2008"/>
<article-categories>
<subj-group subj-group-type="heading"><subject>Original Research</subject></subj-group>
</article-categories>
<title-group>
<article-title>Palmatine potentiates cefquinome efficacy against multidrug-resistant <italic>Escherichia coli</italic> via sulfur/taurine metabolism and oxidative stress modulation</article-title>
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<name>
<surname>Zhang</surname>
<given-names>Yining</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn0003"><sup>&#x2020;</sup></xref>
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<surname>Tong</surname>
<given-names>Yinchao</given-names>
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<surname>Li</surname>
<given-names>Pengcheng</given-names>
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<given-names>Mingjin</given-names>
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<aff id="aff1"><label>1</label><institution>College of Veterinary Medicine, Northwest A&#x0026;F University</institution>, <city>Yangling</city>, <country country="cn">China</country></aff>
<aff id="aff2"><label>2</label><institution>Institute of Traditional Chinese Veterinary Medicine, Northwest A&#x0026;F University</institution>, <city>Yangling</city>, <country country="cn">China</country></aff>
<author-notes><corresp id="c001"><label>&#x002A;</label>Correspondence: Suzhu Qing, <email xlink:href="mailto:ylqingsuzhu@nwsuaf.edu.cn">ylqingsuzhu@nwsuaf.edu.cn</email>; Xinglong Wang, <email xlink:href="mailto:wxlong@nwsuaf.edu.cn">wxlong@nwsuaf.edu.cn</email>; Weimin Zhang, <email xlink:href="mailto:ylzhangwm@nwsuaf.edu.cn">ylzhangwm@nwsuaf.edu.cn</email></corresp><fn fn-type="equal" id="fn0003"><label>&#x2020;</label><p>These authors have contributed equally to this work</p></fn></author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2025-11-14">
<day>14</day>
<month>11</month>
<year>2025</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2025</year>
</pub-date>
<volume>16</volume>
<elocation-id>1644399</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>06</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>20</day>
<month>10</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2025 Zhang, Tong, Li, Zhu, Zhang, Xie, Nasir, Li, Fang, Wang, Qing, Wang and Zhang.</copyright-statement>
<copyright-year>2025</copyright-year>
<copyright-holder>Zhang, Tong, Li, Zhu, Zhang, Xie, Nasir, Li, Fang, Wang, Qing, Wang and Zhang</copyright-holder>
<license><ali:license_ref start_date="2025-11-14">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<p>Palmatine, a natural isoquinoline alkaloid derived from <italic>Fibraureae Caulis</italic>, is widely used for its heat-clearing, detoxifying, antibacterial, and anti-inflammatory properties. The emergence of multidrug-resistant <italic>Escherichia coli</italic> poses a critical challenge to the efficacy of &#x03B2;-lactam antibiotics, particularly cephalosporins such as cefquinome. This study demonstrates that palmatine markedly enhances the antibacterial activity of cefquinome through multi-targeted mechanisms, revealing a new pharmacological potential for this compound. Antimicrobial and synergistic activities were assessed using the microbroth dilution method and checkerboard assay. Bacterial morphology was examined using scanning electron microscopy (SEM), while biofilm inhibition was assessed using confocal laser microscopy. Membrane damage and reactive oxygen species (ROS) levels were detected with fluorescent probe dyes. Transcriptome and RT-qPCR analyses were conducted to identify key mechanistic pathways, and the synergistic effect was further validated in a mouse <italic>Escherichia coli</italic> infection model. <italic>In vitro</italic> analyses of 20 tested isolates revealed broad synergistic effects (FICI &#x2264; 0.5), with cefquinome MICs reduced by 4- and 32-fold. Mechanistic studies revealed that palmatine disrupts membrane integrity, potentiates oxidative stress, and inhibits biofilm formation. Transcriptomic profiling implicated sulfur metabolism as a key pathway, showing that palmatine reversed cefquinome-induced downregulation of sulfur metabolism-related genes. Functional validation confirmed that disruption of taurine uptake in the sulfur metabolic pathway eliminated the synergistic effect. In murine infection models, the combination therapy increased survival by 30%, alleviated diarrhea, and significantly reduced bacterial loads in tissue. This study reveals the novel pharmacological properties of palmatine, identifies metabolic-level reversal regulation as a novel strategy to combat &#x03B2;-lactam resistance, and highlights palmatine as a multi-target adjuvant that enhances cefquinome efficacy against resistant Gram-negative infections.</p>
</abstract>
<abstract abstract-type="graphical">
<title>Graphical abstract</title>
<p><graphic xlink:href="fmicb-16-1644399-gr0001.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Illustrated poster depicting the antibacterial effects of Palmatine and Cefquinome on E. coli, showing observation techniques like SEM and CLSM. Charts detail cell membrane permeability, ROS levels, treatment impacts on diarrhea and antibacterial synergy. Mechanistic pathways are highlighted, including FICI and therapeutic outcomes in models. Visuals include graphs, diagrams, and images of treated samples, demonstrating efficacy and mechanisms.</alt-text>
</graphic>
</p>
</abstract>
<kwd-group>
<kwd>natural products</kwd>
<kwd>multidrug resistant bacteria</kwd>
<kwd>palmatine</kwd>
<kwd>cefquinome</kwd>
<kwd><italic>Escherichia coli</italic></kwd>
</kwd-group><funding-group><award-group id="gs1"><funding-source id="sp1"><institution-wrap><institution>The Ningxia Hui Autonomous Region</institution></institution-wrap></funding-source><award-id rid="sp1">2021BEF02041</award-id></award-group><funding-statement>The author(s) declare that financial support was received for the research and/or publication of this article. This study was supported by the Project of the application of key techniques to reduce the use of antimicrobial drugs for veterinary use in livestock and poultry farms, The Ningxia Hui Autonomous Region (2021BEF02041).</funding-statement></funding-group><counts>
<fig-count count="11"/>
<table-count count="2"/>
<equation-count count="1"/>
<ref-count count="53"/>
<page-count count="19"/>
<word-count count="10283"/>
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<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Antimicrobials, Resistance and Chemotherapy</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec id="sec1">
<title>Highlights</title>
<list list-type="bullet">
<list-item><p>Broad synergy: All tested strains demonstrate the synergistic effects of palmatine and cefquinome.</p></list-item>
<list-item><p>Antibacterial mechanism: Palmatine disrupts membrane integrity, potentiates oxidative stress, and inhibits biofilm formation in <italic>E. coli.</italic></p></list-item>
<list-item><p>Metabolic reversal: Sulfur metabolism is the key pathway to reverse drug resistance.</p></list-item>
</list>
</sec>
<sec sec-type="intro" id="sec2">
<label>1</label>
<title>Introduction</title>
<p>The emergence of antimicrobial resistance poses a critical public health challenge, undermining our ability to control pathogenic microorganisms and contributing to substantial morbidity and mortality worldwide (<xref ref-type="bibr" rid="ref37">Singh and Chibale, 2021</xref>; <xref ref-type="bibr" rid="ref38">So and Walti, 2022</xref>). Recent epidemiological data indicate that drug-resistant bacterial infections account for millions of deaths annually, with <italic>Escherichia coli</italic> being among the most prevalent resistant pathogens (<xref ref-type="bibr" rid="ref5">Birlutiu and Birlutiu, 2025</xref>).</p>
<p>Despite the urgent demand for new antimicrobial agents, the antibiotic development pipeline remains alarmingly limited, with only a few novel compounds receiving clinical approval in the past two decades, while bacterial resistance continues to escalate at an unprecedented rate (<xref ref-type="bibr" rid="ref36">Shariati et al., 2020</xref>). The substantial increase in &#x03B2;-lactam resistance in Gram-negative bacteria has been widely reported in medical facilities, public spaces, agricultural settings, and other ecological niches (<xref ref-type="bibr" rid="ref13">Goldstein, 2021</xref>; <xref ref-type="bibr" rid="ref15">Higgins et al., 2023</xref>; <xref ref-type="bibr" rid="ref32">Navarro et al., 2023</xref>; <xref ref-type="bibr" rid="ref52">Zheng et al., 2022</xref>). Third-generation cephalosporins have been strategic antibiotics in clinical practice for decades (<xref ref-type="bibr" rid="ref31">Menkem et al., 2023</xref>; <xref ref-type="bibr" rid="ref51">Zhao et al., 2021</xref>). Recent surveillance data indicate that 68% of isolates were resistant to third-generation cephalosporins, and the case-fatality rate was 45% among patients with bloodstream infections resistant to third-generation cephalosporins (<xref ref-type="bibr" rid="ref20">Lester et al., 2022</xref>). Equally concerning is the rapid emergence of resistance to fourth-generation cephalosporins (<xref ref-type="bibr" rid="ref12">Fu et al., 2020</xref>; <xref ref-type="bibr" rid="ref49">Wang M. et al., 2020</xref>), underscoring the critical need for innovative strategies to combat &#x03B2;-lactam resistance.</p>
<p>Cefquinome, a fourth-generation cephalosporin developed explicitly for veterinary applications (<xref ref-type="bibr" rid="ref9">Chin et al., 1992</xref>), demonstrates notable stability against &#x03B2;-lactamases and exhibits potent <italic>in vitro</italic> and <italic>in vivo</italic> activity against both Gram-positive and Gram-negative bacteria (<xref ref-type="bibr" rid="ref22">Limbert et al., 1991</xref>). Nevertheless, the emergence of cefquinome resistance in bacteria derived from animals has increased drastically (<xref ref-type="bibr" rid="ref41">Tong et al., 2023a</xref>; <xref ref-type="bibr" rid="ref42">Tong et al., 2023b</xref>), presenting a substantial challenge to its continued clinical utility. Compounding this issue is the role of animal-derived food products as potential vehicles for the dissemination of transferable &#x03B2;-lactamase-encoding genes within human populations (<xref ref-type="bibr" rid="ref7">Carattoli, 2008</xref>; <xref ref-type="bibr" rid="ref25">Livermore et al., 2007</xref>).</p>
<p>Given the complex interconnections between antimicrobial resistance in the human, animal, and environmental sectors (<xref ref-type="bibr" rid="ref30">McEwen and Collignon, 2018</xref>), practical strategies to control resistance from animal sources are essential for protecting human health (<xref ref-type="bibr" rid="ref48">Wang Y. et al., 2020</xref>). Given the limited options for combating cephalosporin resistance, natural products have emerged as a promising source of agents that modify resistance.</p>
<p>Palmatine, a bioactive isoquinoline alkaloid derived from traditional medicinal plants, has attracted increasing attention for its broad-spectrum pharmacological properties, including antibacterial, anticancer, and anti-inflammatory activities (<xref ref-type="bibr" rid="ref26">Long et al., 2019</xref>). Palmatine is the main chemical component contained in Fibraureae Caulis, which was first recorded in The Compendium of Materia Medica, and it is also one of its main active ingredients. Palmatine was included in the Chinese Pharmacopeia in 2020, and its effectiveness and safety have been fully guaranteed.</p>
<p>Previous studies have demonstrated its efficacy against various bacterial pathogens (<xref ref-type="bibr" rid="ref11">Fan et al., 2020</xref>; <xref ref-type="bibr" rid="ref17">Iwasa et al., 1998</xref>; <xref ref-type="bibr" rid="ref21">Li et al., 2015</xref>). In the face of escalating antimicrobial resistance, combination therapy has emerged as a pivotal strategy to restore antibiotic efficacy (<xref ref-type="bibr" rid="ref24">Liu et al., 2021</xref>; <xref ref-type="bibr" rid="ref43">Tyers and Wright, 2019</xref>).</p>
<p>In this study, we report that palmatine broadly enhances the antibacterial activity of cefquinome against clinically isolated <italic>Escherichia coli</italic> by regulating sulfur/taurine metabolism and oxidative stress. Palmatine improves survival rates and significantly reduces diarrhea symptoms in a murine model of Enterotoxigenic <italic>Escherichia coli</italic> (ETEC) infection. These findings position palmatine as a multi-target adjuvant capable of overcoming cefquinome resistance, offering a promising strategy for combating multidrug-resistant Gram-negative infections.</p>
</sec>
<sec sec-type="materials|methods" id="sec3">
<label>2</label>
<title>Materials and methods</title>
<sec id="sec4">
<label>2.1</label>
<title>Chemicals and bacterial strains</title>
<p>Palmatine and cefquinome sulfate (both 97% purity, Macklin/Yuanye) were dissolved in sterile hot water. Our laboratory collection provided an <italic>Escherichia coli</italic> strain (ATCC&#x00AE; 25922&#x2122;) and 19 clinical multidrug-resistant strains isolated from the feces of pigs, dogs, calves, and goats (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>).</p>
</sec>
<sec id="sec5">
<label>2.2</label>
<title>Minimum inhibitory concentration determination</title>
<p>Broth microdilution was conducted using Mueller&#x2013;Hinton broth (Hope Bio, Qingdao, China) with an inoculum of 1&#x202F;&#x00D7;&#x202F;10<sup>6</sup> CFUs/ml<sup>&#x2212;1</sup>. The plates were incubated at 37&#x202F;&#x00B0;C for 16&#x2013;20&#x202F;h, and the MIC was defined as the lowest concentration with no visible bacterial growth. Since cefquinome is not included in the Clinical and Laboratory Standards Institute (CLSI) or the European Committee on Antimicrobial Susceptibility Testing (EUCAST) guidelines, clinical breakpoints for cefquinome were determined based on previous research (<xref ref-type="bibr" rid="ref44">Vilar&#x00F3; et al., 2022</xref>). <italic>Escherichia coli</italic> ATCC&#x00AE; 25,922&#x2122; was used as the quality-control strain, and all tests were performed in triplicate.</p>
</sec>
<sec id="sec6">
<label>2.3</label>
<title>Checkerboard assay</title>
<p>The combined effect of cefquinome and palmatine was evaluated using a checkerboard assay. Briefly, 100&#x202F;&#x03BC;l of Mueller&#x2013;Hinton broth was added to each well of a 96-well plate. Cefquinome and palmatine were serially diluted twofold along the x- and y-axes of the plate, respectively. An overnight bacterial culture was diluted 1:100 in Mueller&#x2013;Hinton broth until the optical density at 600&#x202F;nm (OD<sub>600</sub>) reached 0.1. The plates were then incubated at 37&#x202F;&#x00B0;C for 1&#x2013;20&#x202F;h, after which the turbidity of each well was measured to assess bacterial growth.</p>
<p>The fractional inhibitory concentration index (FICI) for 20 isolates was measured in triplicate, and the FICI was calculated using the following formula:</p>
<disp-formula id="E1"><mml:math id="M1"><mml:mtext>FICI</mml:mtext><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mtext>MICpalmatine</mml:mtext><mml:mspace width="0.33em"/><mml:mo stretchy="true">(</mml:mo><mml:mtext>combo</mml:mtext><mml:mo stretchy="true">)</mml:mo></mml:mrow><mml:mrow><mml:mtext>MICpalmatine</mml:mtext><mml:mspace width="0.33em"/><mml:mo stretchy="true">(</mml:mo><mml:mtext>alone</mml:mtext><mml:mo stretchy="true">)</mml:mo></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:mfrac><mml:mrow><mml:mtext>MICcefquinome</mml:mtext><mml:mspace width="0.33em"/><mml:mo stretchy="true">(</mml:mo><mml:mtext>combo</mml:mtext><mml:mo stretchy="true">)</mml:mo></mml:mrow><mml:mrow><mml:mtext>MICcefquinome</mml:mtext><mml:mspace width="0.33em"/><mml:mo stretchy="true">(</mml:mo><mml:mtext>alone</mml:mtext><mml:mo stretchy="true">)</mml:mo></mml:mrow></mml:mfrac></mml:math></disp-formula>
<p>The synergistic effect is defined as the effect observed when the FIC index value is &#x2264; 0.5 (<xref ref-type="bibr" rid="ref45">Wachino et al., 2020</xref>).</p>
</sec>
<sec id="sec7">
<label>2.4</label>
<title>Growth curve</title>
<p>The tested strains were incubated in LB broth (Land Bridge Technology, Beijing, China) at 37&#x202F;&#x00B0;C until the OD<sub>600</sub> reached 0.1. After dilution, the strains were evenly divided into conical bottles containing either no palmatine or varying concentrations of palmatine. The initial concentration of bacteria was 5&#x202F;&#x00D7;&#x202F;10<sup>5</sup> CFU (<xref ref-type="bibr" rid="ref53">Zhou et al., 2019</xref>).</p>
</sec>
<sec id="sec8">
<label>2.5</label>
<title>Time-kill curves</title>
<p>Time-kill assays were used to evaluate the killing effects of cefquinome and palmatine against the tested strains, alone or in combination, by measuring the number of live bacteria at time points up to 24&#x202F;h. The concentrations of cefquinome and palmatine in the culture medium of <italic>E. coli</italic> were 0.25&#x202F;&#x00D7;&#x202F;MIC for the tested strains; the control medium did not contain these drugs. All samples were cultivated at 37&#x202F;&#x00B0;C. After 0, 1, 3, 5, 7, and 24&#x202F;h of incubation, 100&#x202F;&#x03BC;l samples were taken, respectively, and diluted with sterile normal saline. The diluted samples were then inoculated on agar plates at 37&#x202F;&#x00B0;C overnight, and the number of CFUs was calculated. Each assay was repeated in triplicate.</p>
</sec>
<sec id="sec9">
<label>2.6</label>
<title>Drug-resistance development studies</title>
<p>Overnight bacterial cultures were inoculated into fresh Mueller&#x2013;Hinton broth media containing either no drug, 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome, or 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome combined with 0.25&#x202F;&#x00D7;&#x202F;MIC palmatine. After incubating at 37&#x202F;&#x00B0;C for 24&#x202F;h, the cultures were used to determine MIC values in triplicate. Meanwhile, each culture was diluted and transferred to fresh medium to establish the next generation, maintaining the same drug concentrations as in the previous cycle. This process was continued for 10 d.</p>
</sec>
<sec id="sec10">
<label>2.7</label>
<title>Scanning electron microscope (SEM)</title>
<p>The tested strains were cultured in MH broth with 0.25&#x202F;&#x00D7;&#x202F;MIC palmatine, 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome, or 0.25&#x202F;&#x00D7;&#x202F;MIC of the combined drugs for 10&#x202F;h, respectively. Drug-free MH broth was used as a control. After 10&#x202F;h, the bacteria were collected and washed with PBS. They were then fixed in 4% glutaraldehyde for 3&#x202F;h, followed by dehydration in graded ethanol. Before scanning electron microscopy, the bacteria were subjected to critical-point drying in carbon dioxide and gold spraying.</p>
</sec>
<sec id="sec11">
<label>2.8</label>
<title>Anti-biofilm activity assay</title>
<p>For the biofilm inhibition test, 96-well polystyrene plates were filled with 100 &#x03BC;l of an overnight-cultured bacterial suspension and 100 &#x03BC;l of medium containing either drug-free medium or 0.25&#x202F;&#x00D7;&#x202F;MIC of single or combination drugs. The biofilm was then cultivated by incubating at 37&#x202F;&#x00B0;C for 48&#x202F;h. The bacterial precipitate was washed three times with sterile PBS to remove the floating bacteria. Then, 200&#x202F;&#x03BC;l of methanol was added to each well for 15&#x202F;min, and the precipitate was naturally air dried. Each well was stained with 200&#x202F;&#x03BC;l of 1% crystal violet, incubated at room temperature for 5&#x202F;min, and washed three times with sterile PBS to remove excess dye. After 10&#x202F;min of incubation at room temperature, 200&#x202F;&#x03BC;l of 95% ethanol was added, and the bound crystal violet was eluted. Biofilm formation was measured at OD<sub>570</sub> nm. All tests were conducted three times, with MH broth as a negative control (<xref ref-type="bibr" rid="ref16">Hou et al., 2022</xref>).</p>
<p>Confocal laser scanning microscopy (CLSM) was used to assess the inhibitory effects of different drugs on biofilms. Biofilms of the tested strains were cultivated in LB medium in 24-well, glass-bottomed microplates for 24&#x202F;h at 37&#x202F;&#x00B0;C under static conditions. The biofilms were then subjected to the drug treatments described above for 24&#x202F;h, washed, and fixed with paraformaldehyde. Biofilm cells were stained with fluorescent dyes by adding 5&#x202F;&#x03BC;M of SYTO&#x00AE; 9 green fluorescent nucleic acid stain (Invitrogen, Thermo Fisher Scientific; excitation at 488&#x202F;nm and emission from 500 to 550&#x202F;nm) and 5&#x202F;&#x03BC;M of SYTO&#x00AE; 62 red fluorescent nucleic acid stain (Molecular Probes, Life Technologies; excitation at 652&#x202F;nm and emission at 676&#x202F;nm), prepared in 0.9% NaCl, incubated at room temperature for 15&#x202F;min in the dark, and then washed twice with 0.9% NaCl (<xref ref-type="bibr" rid="ref39">Tahrioui et al., 2019</xref>).</p>
</sec>
<sec id="sec12">
<label>2.9</label>
<title>Bacteria staining and fluorescence assay</title>
<p>Multidrug-resistant <italic>E. coli</italic> E93 was clinically isolated and used in this fluorescence assay. Bacterial pretreatments for all fluorescence measurements were performed using similar protocols. Briefly, the tested bacteria were cultivated overnight at 37&#x202F;&#x00B0;C, and the cultures were shaken at 200&#x202F;rpm for 16&#x202F;h. The tested bacteria were cultured in different medicated media, including drug-free, 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome, 0.25&#x202F;&#x00D7;&#x202F;MIC palmatine, or a combination. Then, the cultures were washed and suspended in PBS. The fluorescent dye was added when the suspension was adjusted to an OD<sub>600</sub> of 0.5. After incubation at 37&#x202F;&#x00B0;C for 30&#x202F;min, the cultures were washed twice using PBS to remove excess unadsorbed fluorescent probes. Fluorescence intensity was measured. Several fluorescent probes were used in this assay as follows.</p>
<sec id="sec13">
<label>2.9.1</label>
<title>Cell membrane integrity assay</title>
<p>The fluorescence intensity of 10&#x202F;nM propidium iodide (PI) (Tsingke Biotech, Beijing, China) was measured at an excitation wavelength of 535&#x202F;nm and an emission wavelength of 615&#x202F;nm, either alone or in combination with cefquinome and palmatine.</p>
</sec>
<sec id="sec14">
<label>2.9.2</label>
<title>Outer membrane permeability assay</title>
<p>The fluorescence intensity of 10&#x202F;&#x03BC;M 1-N-phenylnaphthylamine (NPN) (Macklin, Shanghai, China) was measured at an excitation wavelength of 350&#x202F;nm and an emission wavelength of 420&#x202F;nm, either alone or in combination with cefquinome and palmatine.</p>
</sec>
<sec id="sec15">
<label>2.9.3</label>
<title>Membrane depolarization assay</title>
<p>The fluorescence intensity of 0.5&#x202F;&#x03BC;M 3,3-dipropylthiadicarbocyanine iodide DiSC<sub>3</sub>(5) (Macklin, Shanghai, China) was measured at an excitation wavelength of 622&#x202F;nm and an emission wavelength of 670&#x202F;nm, either alone or in combination with cefquinome and palmatine.</p>
</sec>
<sec id="sec16">
<label>2.9.4</label>
<title>Total ROS measurement</title>
<p>The fluorescence intensity of 0.5&#x202F;&#x03BC;M 3,3-dipropylthiadicarbocyanine iodide DiSC<sub>3</sub>(5) (Macklin, Shanghai, China) was measured at an excitation wavelength of 622&#x202F;nm and an emission wavelength of 670&#x202F;nm, either alone or in combination with cefquinome and palmatine.</p>
<p>The levels of ROS in <italic>E. coli</italic> E93 were measured using 10&#x202F;&#x03BC;M 2&#x2032;,7&#x2032;-dichlorodihydrofluorescein diacetate (DCFH-DA) (Beyotime, Shanghai, China). The fluorescence intensity was determined at an excitation wavelength of 488&#x202F;nm and an emission wavelength of 525&#x202F;nm.</p>
</sec>
</sec>
<sec id="sec17">
<label>2.10</label>
<title>Extracellular protein leakage assay</title>
<p>The bacterial suspensions cultured overnight were evenly mixed with sterile PBS containing 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome, 0.25&#x202F;&#x00D7;&#x202F;MIC palmatine, or both, respectively, and the same volume of drug-free PBS was used as a negative control. The supernatant obtained through centrifugation was incubated at 37&#x202F;&#x00B0;C for 2&#x202F;h. The supernatant was filtered through a 0.22-micron membrane, and the bacterial extracellular protein leakage was measured using a BCA protein concentration assay kit (Beyotime, Shanghai, China).</p>
</sec>
<sec id="sec18">
<label>2.11</label>
<title>Transcriptome analysis</title>
<p>The tested <italic>E. coli</italic> E93 strain was grown in Mueller&#x2013;Hinton broth to the early exponential phase and then treated with cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC) alone or in combination with palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) for 4&#x202F;h. Each treatment was performed in triplicate. Total RNA was extracted using Trizol reagent (Takara, Tokyo, Japan), quantified using a NanoDrop&#x2122; spectrophotometer (Thermo Scientific, MA, USA), and sequenced using the Illumina HiSeq 2000 system (Genedenovo, Guangzhou, China).</p>
<p>mRNA library construction was conducted using the Illumina TruSeq RNA Sample Prep Kit according to the manufacturer&#x2019;s protocol. Libraries were amplified by bridge PCR with the Illumina TruSeq PE Cluster Kit v3-cBot-HS on a cBot system and sequenced using the HiSeq2000 TruSeq SBS Kit v3-HS (200&#x202F;cycles) with paired-end reads of 2&#x202F;&#x00D7;&#x202F;150&#x202F;bp (PE150).</p>
<p>Raw sequencing reads were filtered and aligned to the <italic>E. coli</italic> E93 reference genome. Differentially expressed genes (DEGs) were identified using the FPKM (Fragments Per Kilobase of transcript per Million mapped reads) method, with significance thresholds of <italic>p</italic> &#x2264;&#x202F;0.05 and fold change (FC)&#x202F;&#x2265;&#x202F;2 (log<sub>2</sub> FC&#x202F;&#x2265;&#x202F;1 or log<sub>2</sub> FC&#x202F;&#x2264;&#x202F;&#x2212;1). DEGs were compared between the drug-free and cefquinome-treated groups and between the cefquinome-treated groups. Genes showing reversed expression patterns between these two comparisons were further analyzed.</p>
</sec>
<sec id="sec19">
<label>2.12</label>
<title>RT-qPCR analysis</title>
<p>Sample processing in this experiment followed the same procedure as that used for transcriptome sequencing. <italic>E. coli</italic> E93 strains were grown to the early exponential phase, incubated, and then treated with cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC) alone or in combination with palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) for 4&#x202F;h. Each treatment was performed in triplicate. Then, total RNA was extracted and quantified by its absorbance ratio (260&#x202F;nm/280&#x202F;nm). Reverse transcription was performed using the RT reagent kit with gDNA eraser (Dining, Beijing, China). Real-time quantitative PCR (RT-qPCR) was conducted using the SYBR Green qPCR kit (Dining, Beijing, China) on a Tianlong Technology system (Xi&#x2019;an, China) with optimized primers (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S4</xref>). Gene expression levels were analyzed using the 2<sup>-&#x0394;&#x0394;Ct</sup> method.</p>
</sec>
<sec id="sec20">
<label>2.13</label>
<title>Swarming assay</title>
<p>Swarming Petri dishes (900&#x202F;mm by 15&#x202F;mm) contained 20&#x202F;ml of medium supplemented with 1&#x202F;mM MgSO<sub>4</sub>, 0.2% glucose, 0.5% casamino acids (Land Bridge Technology, Beijing, China), and 0.5% agar (<xref ref-type="bibr" rid="ref6">Bru et al., 2019</xref>). The medium contained drugs, including 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome or 0.25&#x202F;&#x00D7;&#x202F;MIC combined drugs, and no drugs. The tested strain was cultured overnight (16 to 18&#x202F;h) at 37&#x202F;&#x00B0;C. Five microliters of culture were spotted in the center of the medium. Plates were incubated overnight at 37&#x202F;&#x00B0;C, upright. The diameter of the swimming zone of the tested strain on each plate was measured, and each assay was repeated in triplicate.</p>
</sec>
<sec id="sec21">
<label>2.14</label>
<title>Iron determination</title>
<p>The tested strain was cultured overnight from single colonies in LB medium until saturation. It was then inoculated into fresh LB broth containing either no drugs, 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome, or 0.25&#x202F;&#x00D7;&#x202F;MIC cefquinome combined with 0.25&#x202F;&#x00D7;&#x202F;MIC palmatine, and incubated for 4&#x202F;h. The bacterial cells were harvested by centrifugation and weighed. The total iron and ferrous ion contents in the bacterial pellets were measured using a Ferrous Ion Colorimetric Test Kit and a Total Iron Ion Colorimetric Assay Kit (Elabscience Biotechnology, Wuhan, China).</p>
</sec>
<sec id="sec22">
<label>2.15</label>
<title>Taurine uptake inhibition test (a competitive inhibitor of taurine)</title>
<p>The synergistic effect of cefquinome and palmatine was assessed using a checkerboard assay with added taurine uptake inhibitors. &#x03B2;-Alanine is a competitive inhibitor of taurine uptake in <italic>E. coli</italic> (<xref ref-type="bibr" rid="ref18">Jong et al., 2010</xref>). Moreover, 5&#x202F;mM &#x03B2;-alanine was incorporated into Mueller&#x2013;Hinton broth, and then the change in FICI (Fractional Inhibitory Concentration Index) of palmatine and cefquinome in the presence of the inhibitor was measured.</p>
</sec>
<sec id="sec23">
<label>2.16</label>
<title>Animal studies</title>
<p>Female ICR mice aged 6&#x2013;8&#x202F;weeks were obtained from Chengdu Dossy Experimental Animals Co., Ltd. (Chengdu, China). The mice were kept at 18&#x2013;22&#x202F;&#x00B0;C with 40&#x2013;60% humidity and acclimated for a week. The Sichuan Experimental Animal Management Committee issued the laboratory animal use license, number SCXK 2021&#x2013;036. All procedures complied with Northwest A&#x0026;F University&#x2019;s laboratory animal management policies and the Guidelines for the Care and Use of Laboratory Animals (ISBN-10: 0&#x2013;309&#x2013;15,396-4).</p>
</sec>
<sec id="sec24">
<label>2.17</label>
<title>Mouse systemic infection model</title>
<p>The ICR mice were challenged with a lethal dose of ETEC (1&#x202F;&#x00D7;&#x202F;10<sup>9</sup> CFUs/ml<sup>&#x2212;1</sup>, 300&#x202F;&#x03BC;l) intraperitoneally to induce a systemic infection. The infected mice were randomly assigned to five groups (<italic>n</italic> =&#x202F;10): cefquinome (5&#x202F;mg/kg<sup>&#x2212;1</sup> of body weight), palmatine (10&#x202F;mg/kg<sup>&#x2212;1</sup> of body weight), a combined drug group, a drug-free control (sterile saline), and a blank control. After 2&#x202F;h of infection, different treatments were administered to each group of mice. Mouse survival was observed for up to 168&#x202F;h post-infection.</p>
</sec>
<sec id="sec25">
<label>2.18</label>
<title>Mouse model of acute diarrhea</title>
<p>The ICR mice were inoculated with ETEC (2.5&#x202F;&#x00D7;&#x202F;10<sup>8</sup> CFUs/ml<sup>&#x2212;1</sup>, 300&#x202F;&#x03BC;l) to induce diarrhea. In our preliminary experiment, this dose caused diarrhea in all mice, and they all survived within 24&#x202F;h. Female ICR mice infected with ETEC were randomly divided into four groups (<italic>n</italic> =&#x202F;8). Before the pre-treatment injection, the mice were fasted for 12&#x202F;h. At the start of the experiment, each mouse was placed in a separate cage covered with filter paper to record their fecal stains.</p>
<p>Mice in different groups were treated with the following treatments: cefquinome (5&#x202F;mg/kg<sup>&#x2212;1</sup> of body weight, intraperitoneal injection), palmatine (10&#x202F;mg/kg<sup>&#x2212;1</sup> of body weight, oral gavage), control treatment (intraperitoneal injection and oral gavage with an equal volume of sterile saline), and combination therapy administered 2&#x202F;h after infection. The mice&#x2019;s weights were recorded before and 24&#x202F;h after infection. At 24&#x202F;h after infection, blood samples were collected simultaneously from the orbit. The mice were anesthetized with Avertin (30&#x202F;&#x03BC;l /g body weight) (DOWOBIO, Shanghai, China) and euthanized. Liver and intestine samples were then collected.</p>
</sec>
<sec id="sec26">
<label>2.19</label>
<title>Evaluation of diarrhea symptoms in mice</title>
<p>Here, an evaluation criterion reflecting the severity of diarrhea in mice&#x2014;loose stools recorded on filter paper&#x2014;was used in this experiment. The loose stool incidence rate (LSIR) is calculated as the ratio of the number of loose stools to the total number of stools within an animal. The loose stool grade (LSG) is the degree of loose stools, classified into four grades according to the diameter of loose stools on the filter papers: Grade 1 (&#x003C;&#x202F;1&#x202F;cm), Grade 2 (1&#x2013;2&#x202F;cm), Grade 3 (2&#x2013;3&#x202F;cm), and Grade 4 (&#x003E;3&#x202F;cm). The average loose stool grade (ALSG) is calculated as the ratio of the sum of LSGs of each loose stool to the total number of loose stools within an animal. The diarrhea index is calculated by multiplying LSIR by ALSG (<xref ref-type="bibr" rid="ref28">Lu et al., 2020</xref>).</p>
</sec>
<sec id="sec27">
<label>2.20</label>
<title>Determination of bacterial load in mouse tissue</title>
<p>The dilution plate count evaluated the bacterial load per unit mass of mouse tissue in each group. The collected mouse liver, jejunum, and ileum were weighed. Homogenized tissue and collected anticoagulant blood were diluted in sterilized normal saline containing Triton X-100 (0.05&#x202F;mol&#x202F;L<sup>&#x2212;1</sup>) in multiple dilutions and plated on an LB plate for overnight culture for colony counting. The bacterial content in the tissue was calculated according to the dilution ratio (<xref ref-type="bibr" rid="ref14">Guan et al., 2019</xref>).</p>
</sec>
<sec id="sec28">
<label>2.21</label>
<title>Statistical analysis</title>
<p>Statistical analysis was performed using GraphPad Prism 9 and SPSS 27.0. All data are presented as mean &#x00B1; SD. For the <italic>in vitro</italic> studies, an unpaired t-test was used to calculate <italic>p</italic>-values for the RT-PCR assay, while one-way ANOVA was used for the other experiments. In the <italic>in vivo</italic> studies, n represented the number of animals per group, and statistical significance was determined by an unpaired t-test. Differences with a <italic>p-value of</italic> &#x003C; 0.05 were considered significant. The number of asterisks indicates significance levels: &#x002A;<italic>p</italic> &#x003C;&#x202F;0.05, &#x002A;&#x002A;<italic>p</italic> &#x003C;&#x202F;0.01, &#x002A;&#x002A;&#x002A;<italic>p</italic> &#x003C;&#x202F;0.001.</p>
</sec>
</sec>
<sec sec-type="results" id="sec29">
<label>3</label>
<title>Result</title>
<sec id="sec30">
<label>3.1</label>
<title>Synergistic activity of the cefquinome-palmatine combination</title>
<p>Cefquinome MICs of clinical isolates ranged from 2 to 1,024&#x202F;&#x03BC;g/ml<sup>&#x2212;1</sup>, and palmatine MICs ranged from 2,048 to 16,384 &#x03BC;g/ml<sup>&#x2212;1</sup> (<xref ref-type="table" rid="tab1">Table 1</xref>). The MICs of cefquinome and palmatine for ATCC25922 were 0.08&#x202F;&#x00B1;&#x202F;0.04&#x202F;&#x03BC;g/ml<sup>&#x2212;1</sup> and 5461.33&#x202F;&#x00B1;&#x202F;2364.83&#x202F;&#x03BC;g/ml<sup>&#x2212;1</sup> (<xref ref-type="table" rid="tab1">Table 1</xref>). Checkerboard assays revealed synergistic effects (FICI &#x2264; 0.5) among all 20 strains, with cefquinome MICs reduced by&#x2265; 4-fold (<xref ref-type="fig" rid="fig1">Figure 1d</xref>). The mean FICI range was 0.10&#x2013;0.50, demonstrating consistent potentiation across the tested strains.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>FICI results of MIC (Palmatine) and FICI (Palmatine&#x202F;&#x00D7;&#x202F;cefquinome) for 20 <italic>E. coli</italic> strains.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">Strains</th>
<th align="center" valign="top" colspan="2">MIC (Alone)/&#x03BC;g&#x202F;ml<sup>&#x2212;1</sup></th>
<th align="center" valign="top" colspan="2">MIC (Combined)/&#x03BC;g&#x202F;ml<sup>&#x2212;1</sup></th>
<th align="center" valign="top" rowspan="2">FICI</th>
</tr>
<tr>
<th align="center" valign="top">Palmatine</th>
<th align="center" valign="top">Cefquinome</th>
<th align="center" valign="top">Palmatine</th>
<th align="center" valign="top">Cefquinome</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">ATCC&#x00AE; 25,922&#x2122;</td>
<td align="center" valign="middle">5,500 &#x00B1; 2,400</td>
<td align="center" valign="middle">0.08&#x202F;&#x00B1;&#x202F;0.04</td>
<td align="center" valign="middle">1,400 &#x00B1; 590</td>
<td align="center" valign="middle">0.02 &#x00B1; 0.01</td>
<td align="center" valign="middle">0.50 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">W-1</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">8.0.&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">260 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.42 &#x00B1; 0.14</td>
<td align="center" valign="middle">0.10 &#x00B1; 0.02</td>
</tr>
<tr>
<td align="left" valign="bottom">SE-2</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">510&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">1,000 &#x00B1; 0.00</td>
<td align="center" valign="middle">75 &#x00B1; 49</td>
<td align="center" valign="middle">0.40 &#x00B1; 0.10</td>
</tr>
<tr>
<td align="left" valign="bottom">S-9</td>
<td align="center" valign="middle">8,200 &#x00B1; 0.00</td>
<td align="center" valign="middle">21&#x202F;&#x00B1;&#x202F;9.2</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">2.7 &#x00B1; 1.2</td>
<td align="center" valign="middle">0.40 &#x00B1; 0.10</td>
</tr>
<tr>
<td align="left" valign="bottom">S-14</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">8.0&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">260 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.33 &#x00B1; 0.14</td>
<td align="center" valign="middle">0.10 &#x00B1; 0.02</td>
</tr>
<tr>
<td align="left" valign="bottom">S-17</td>
<td align="center" valign="middle">8,200 &#x00B1; 0.00</td>
<td align="center" valign="middle">8.0&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">1,000 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.42 &#x00B1; 0.14</td>
<td align="center" valign="middle">0.18 &#x00B1; 0.02</td>
</tr>
<tr>
<td align="left" valign="bottom">E7-2</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">2.00&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">510 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.50 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.50 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">E34</td>
<td align="center" valign="middle">2,700 &#x00B1; 1,200</td>
<td align="center" valign="middle">1,000&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">850 &#x00B1; 300</td>
<td align="center" valign="middle">128 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.38 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">E35</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">1,000&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">1,000 &#x00B1; 0.00</td>
<td align="center" valign="middle">260 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.50 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">E43</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">21&#x202F;&#x00B1;&#x202F;9.2</td>
<td align="center" valign="middle">510 &#x00B1; 0.00</td>
<td align="center" valign="middle">3.3 &#x00B1; 1.2</td>
<td align="center" valign="middle">0.44 &#x00B1; 0.11</td>
</tr>
<tr>
<td align="left" valign="bottom">E44</td>
<td align="center" valign="middle">16,000 &#x00B1; 0.00</td>
<td align="center" valign="middle">4.0&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.21 &#x00B1; 0.07</td>
<td align="center" valign="middle">0.18 &#x00B1; 0.02</td>
</tr>
<tr>
<td align="left" valign="bottom">E46</td>
<td align="center" valign="middle">16,000 &#x00B1; 0.00</td>
<td align="center" valign="middle">6.7&#x202F;&#x00B1;&#x202F;2.3</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.42 &#x00B1; 0.14</td>
<td align="center" valign="middle">0.19 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">E48</td>
<td align="center" valign="middle">3,400 &#x00B1; 1,200</td>
<td align="center" valign="middle">32&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">850 &#x00B1; 300</td>
<td align="center" valign="middle">4.7 &#x00B1; 3.1</td>
<td align="center" valign="middle">0.40 &#x00B1; 0.10</td>
</tr>
<tr>
<td align="left" valign="bottom">E49</td>
<td align="center" valign="middle">5,500 &#x00B1; 2,400</td>
<td align="center" valign="middle">16&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">510 &#x00B1; 0.00</td>
<td align="center" valign="middle">1.2 &#x00B1; 0.76</td>
<td align="center" valign="middle">0.20 &#x00B1; 0.05</td>
</tr>
<tr>
<td align="left" valign="bottom">E50</td>
<td align="center" valign="middle">8,200 &#x00B1; 0.00</td>
<td align="center" valign="middle">1,000&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">260 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.50 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">A51</td>
<td align="center" valign="middle">3,400 &#x00B1; 1,200</td>
<td align="center" valign="middle">510&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">850 &#x00B1; 300</td>
<td align="center" valign="middle">96 &#x00B1; 55</td>
<td align="center" valign="middle">0.44 &#x00B1; 0.11</td>
</tr>
<tr>
<td align="left" valign="bottom">E57</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">8.0&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">510 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.58 &#x00B1; 0.38</td>
<td align="center" valign="middle">0.20 &#x00B1; 0.05</td>
</tr>
<tr>
<td align="left" valign="bottom">E59</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">340&#x202F;&#x00B1;&#x202F;150</td>
<td align="center" valign="middle">1,400 &#x00B1; 590</td>
<td align="center" valign="middle">37 &#x00B1; 24</td>
<td align="center" valign="middle">0.47 &#x00B1; 0.08</td>
</tr>
<tr>
<td align="left" valign="bottom">E72</td>
<td align="center" valign="middle">4,100 &#x00B1; 0.00</td>
<td align="center" valign="middle">1,000&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">1,000 &#x00B1; 0.00</td>
<td align="center" valign="middle">260 &#x00B1; 0.00</td>
<td align="center" valign="middle">0.50 &#x00B1; 0.00</td>
</tr>
<tr>
<td align="left" valign="bottom">E93</td>
<td align="center" valign="middle">2000 &#x00B1; 0.00</td>
<td align="center" valign="middle">1,000&#x202F;&#x00B1;&#x202F;0.00</td>
<td align="center" valign="middle">510 &#x00B1; 0.00</td>
<td align="center" valign="middle">75 &#x00B1; 49</td>
<td align="center" valign="middle">0.32 &#x00B1; 0.05</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>FIC index in tested bacterial strains. <bold>(a)</bold> Chemical structure of cefquinome. <bold>(b)</bold> Chemical structure of palmatine. <bold>(c)</bold> Synergistic effect of cefquinome and palmatine in the checkerboard assay. <bold>(d)</bold> FIC index from 20 tested strains of <italic>E. coli.</italic></p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g001.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Chemical structures and experimental results are depicted in four sections. Panel a shows the chemical structure of a compound with nitrogen, oxygen, and sulfur atoms marked. Panel b illustrates another compound with methoxy groups and a nitrogen cation. Panel c presents a microplate with a colorimetric assay demonstrating varying concentrations of palmatine and cefquinome. Panel d features a bar graph of fractional inhibitory concentration index across different strains, illustrating the effectiveness of compounds with error bars included.</alt-text>
</graphic>
</fig>
<p>The FICI data (<xref ref-type="table" rid="tab1">Table 1</xref>), drug susceptibility results (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S2</xref>), and resistance gene profiles of the strains (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S1</xref>) were comprehensively analyzed. The results revealed no direct correlation between the synergistic effect and specific drug-resistance genes or phenotypes. This conclusion is further validated by the consistent synergistic effect observed when combining these drugs with standard strains. Consequently, the synergistic interaction between palmatine and cefquinome exhibits a broad spectrum of activity.</p>
</sec>
<sec id="sec31">
<label>3.2</label>
<title>Resistance suppression by palmatine</title>
<p>Growth curves confirmed that sub-MIC palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) did not affect bacterial proliferation (<xref ref-type="fig" rid="fig2">Figure 2a</xref>). Time-kill assays showed that combination therapy (0.25&#x202F;&#x00D7;&#x202F;MIC each) achieved &#x003E; 4-log<sub>10</sub> CFUs/ml<sup>&#x2212;1</sup> reduction within 24&#x202F;h, surpassing monotherapy effects (<xref ref-type="fig" rid="fig2">Figures 2b</xref>,<xref ref-type="fig" rid="fig2">c</xref>). Serial passage experiments demonstrated that palmatine suppressed the development of cefquinome resistance: MICs increased fourfold in cefquinome-only groups but remained stable in combination cohorts (<xref ref-type="fig" rid="fig2">Figure 2d</xref>). These results suggest that palmatine treatment could prevent the growth of bacterial resistance.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Palmatine improves the activity of cefquinome against <italic>E.coli</italic>. <bold>(a)</bold> Growth curve of <italic>E. coli</italic> at different subinhibitory concentrations (0.25&#x202F;&#x00D7;&#x202F;MIC, 0.125&#x202F;&#x00D7;&#x202F;MIC, and 0.0625&#x202F;&#x00D7;&#x202F;MIC) of palmatine. <bold>(b)</bold> Time-dependent killing curve of <italic>E. coli</italic> treated with the combination of palmatine and cefquinome. <italic>E. coli</italic> was grown to the exponential phase and challenged with palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) and cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC) alone or in combination for 24&#x202F;h. <bold>(c)</bold> The combination of palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) and cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC) can inhibit bacterial growth. <bold>(d)</bold> The addition of palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) prevents the evolution of cefquinome resistance in <italic>E. coli</italic> E93 <italic>in vitro</italic>. Resistance is acquired during serial passaging in the presence of 0.25&#x202F;&#x00D7;&#x202F;MIC levels of cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC). All data are representative of three independent experiments and are shown as mean &#x00B1; SD.</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g002.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Growth and antibacterial effect of various treatments on E. coli. (a) Line graphs display growth curves of different E. coli strains with varying cefquinome concentrations over time, measured by optical density. (b) Line graphs illustrate bacterial survival over time under different treatments, including palmatine, cefquinome, and their combination. (c) Image shows four test tubes containing bacterial cultures under control, palmatine, cefquinome, and combination conditions. (d) Line graph presents fold increase in minimum inhibitory concentration of cefquinome over ten days across different treatments.</alt-text>
</graphic>
</fig>
</sec>
<sec id="sec32">
<label>3.3</label>
<title>Morphological and biofilm disruption</title>
<p>Scanning electron microscopy (SEM) revealed severe membrane damage in combination-treated cells, including outer membrane perforations (<xref ref-type="fig" rid="fig3">Figure 3a</xref>, red arrows). CLSM analysis showed that the combination therapy reduced biofilm thickness and increased the number of cell deaths (<xref ref-type="fig" rid="fig3">Figure 3b</xref>). Crystal violet quantification confirmed that biofilm biomass decreased significantly after the combined treatment compared with antibiotics alone (<italic>p</italic> &#x003C;&#x202F;0.01) (<xref ref-type="fig" rid="fig4">Figure 4f</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>SEM and CLSI observation. <bold>(a)</bold> Palmatine enhances the damage caused by cefquinome to E.coli. Morphological changes in <italic>E. coli</italic> E93 treated with sub-MIC of palmatine, cefquinome, or their combination were visualized with SEM. Scale bars: 3.0&#x202F;&#x03BC;m. <bold>(b)</bold> Three-dimensional reconstructions of 48-h <italic>E.coli</italic> biofilms were created using CLSM (200&#x202F;&#x00D7;&#x202F;magnification). Red fluorescence represents dead bacteria, and green fluorescence represents live bacteria.</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g003.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Electron microscope images show bacterial colonies under different conditions: control, palmatine, cefquinome, and a combination. The combination image shows disrupted colonies. Fluorescence microscopy images of the same conditions display green bacterial coverage on a grid, with the combination showing reduced fluorescence, indicating decreased bacterial presence.</alt-text>
</graphic>
</fig>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Palmatine enhances the destructive effect of cefquinome on <italic>E.coli.</italic> <bold>(a)</bold> Palmatine enhances the membrane permeability of cefquinome for propidium iodide (PI) in <italic>E. coli.</italic> <bold>(b)</bold> Palmatine permeabilizes the outer membrane and enhances cefquinome-induced outer membrane disruption. Permeability was evaluated by measuring the fluorescence intensity of 1-N-phenylnaphthylamine (NPN). <bold>(c)</bold> Palmatine dissipates membrane potential and drastically enhances cefquinome&#x2019;s effects on it. Fluorescence dye DiSC<sub>3</sub>(5) was used to assess membrane potential changes induced by palmatine, cefquinome, or the combination. <bold>(d)</bold> The addition of palmatine significantly increases the production of ROS levels in <italic>E.coli</italic>; the lack of palmatine does not affect ROS levels. <bold>(e)</bold> The addition of palmatine further improves protein leakage in <italic>E. coli</italic> caused by cefquinome. <bold>(f)</bold> The addition of palmatine significantly inhibits <italic>E. coli</italic> biofilm formation; the lack of palmatine has no effect. All experiments were performed with biological replicates and are presented as mean &#x00B1; SD. Concentrations of palmatine, cefquinome, or combination drugs were 0.25 MIC. One-way ANOVA among multiple groups was used to calculate <italic>p</italic>-values (&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.05, &#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.01, &#x002A;&#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.001).</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g004.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Bar charts comparing bacterial characteristics across different treatments: (a) Membrane permeability shows increased fluorescence, especially with combined treatment. (b) Outer membrane permeability is highest in the combination group. (c) Membrane potential, measured by fluorescence, increases with combination treatment. (d) Reactive oxygen species (ROS) levels are significantly elevated with palmatine. (e) Protein leakage indicates higher values in the combined treatment. (f) Biofilm formation, measured by OD at 570 nm, decreases with palmatine and combination treatments. Key indicates normal control, palmatine, cefquinome, and their combination. Significant differences are marked with asterisks.</alt-text>
</graphic>
</fig>
</sec>
<sec id="sec33">
<label>3.4</label>
<title>Enhanced membrane damage and oxidative stress</title>
<p>We further verified that palmatine worsened the damage to bacterial cell membranes caused by cefquinome. To validate our hypothesis, we tested <italic>E. coli</italic> E93 with cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC concentration) and found that the addition of palmatine could enhance the destructive effect of cefquinome on the bacterial outer membrane permeability (<italic>p</italic> &#x003C;&#x202F;0.001) (<xref ref-type="fig" rid="fig4">Figure 4a</xref>) and simultaneously cause dissipation of the cytoplasmic membrane potential (<italic>p</italic> &#x003C;&#x202F;0.001) (<xref ref-type="fig" rid="fig4">Figure 4b</xref>). Compared with the control group, palmatine monotherapy showed limited efficacy in reducing the intracellular protein leakage of <italic>E. coli;</italic> its combination with cefquinome significantly potentiated (<italic>p</italic> &#x003C;&#x202F;0.001) (<xref ref-type="fig" rid="fig4">Figure 4c</xref>).</p>
<p>In addition, intracellular ROS levels in <italic>E. coli</italic> increased with the addition of palmatine. The intracellular ROS concentration was also significantly higher in the combination group than in the monotherapy group, indicating that bacterial oxidative damage was intensified (<italic>p</italic> &#x003C;&#x202F;0.001) (<xref ref-type="fig" rid="fig4">Figure 4d</xref>).</p>
</sec>
<sec id="sec34">
<label>3.5</label>
<title>Transcriptome analysis</title>
<p>We previously sequenced the whole genome of <italic>E. coli</italic> E93 using Nanopore sequencing to provide reference genomes for transcriptome sequencing (<xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S2</xref>). Transcriptome analysis revealed 4,586 expressed genes across all treatment groups (<xref ref-type="fig" rid="fig5">Figure 5b</xref>). After further screening, 174 genes with reversed expression patterns under combination treatment compared to cefquinome alone were identified (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S3</xref>). GO and KEGG enrichment analyses highlighted significant changes in ABC transporters, flagellar assembly, two-component systems, and sulfur metabolism (<xref ref-type="fig" rid="fig5">Figures 5c</xref>,<xref ref-type="fig" rid="fig5">d</xref>). Notably, cefquinome-induced upregulation of genes involved in amino sugar and taurine metabolism was reversed by palmatine (<xref ref-type="fig" rid="fig6">Figure 6</xref>). RT-PCR validation confirmed the transcriptomic findings (<xref ref-type="fig" rid="fig7">Figure 7</xref>).</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Transcriptomic analysis of <italic>E. coli</italic> E93 treated with no drug, palmatine, or the combination of cefquinome and palmatine. <bold>(a)</bold> Principal component analysis of different treatment groups of <italic>E. coli</italic> E93. <bold>(b)</bold> Venn diagrams showing the expressed genes in various treatment groups of <italic>E. coli</italic> E93. GO <bold>(c)</bold> and KEGG enrichment analysis <bold>(d)</bold> of the differentially expressed genes (DEGs) in <italic>E. coli</italic> E93 after exposure to no drug, cefquinome, or the combination of cefquinome and palmatine.</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g005.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Four panels display different types of data visualizations. Panel (a) is a PCA plot with three groups labeled A, B, and C, indicating variance on PC1 and PC2 axes. Panel (b) is a Venn diagram showing overlaps among Control, Cefquinome, and Combination groups, with numbers indicating shared and unique elements. Panel (c) is a bar graph of GO terms related to transport activities, with gene percentages and significance levels. Panel (d) features a dot plot of pathways, showing gene ratios and number with color indicating significance levels.</alt-text>
</graphic>
</fig>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>Transcriptomic differential gene. Filtered differentially expressed genes related to ABC transport, two-component systems, sulfur metabolism, sucrose and starch metabolism, flagellar assembly, amino sugar metabolism, and taurine metabolism. Three biological replicates were combined to produce the final data.</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g006.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Heatmaps showing expression levels of genes across various metabolic and transport systems in three conditions: Control, Cefquinome, and Combination. Systems include ABC transport, Two-component system, Sulfur metabolism, Flagellar assembly, Amino sugars and taurine metabolism, and Sucrose and starch metabolism. Colors range from blue (-1) indicating downregulation, to red (1) indicating upregulation, with white (0) as neutral.</alt-text>
</graphic>
</fig>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>Validation of differential gene expression in transcriptomics. According to the results of transcriptome sequencing, relative expression of representative genes of <italic>E. coli</italic> E93 after treatment with cefquinome (0.25&#x202F;&#x00D7;&#x202F;MIC) alone or in combination with palmatine (0.25&#x202F;&#x00D7;&#x202F;MIC) for 4&#x202F;h was determined by RT-PCR. Data are presented as mean &#x00B1; SD, and an unpaired t-test was used to calculate <italic>p</italic>-values (&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.05, &#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.01, &#x002A;&#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.001).</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g007.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Bar graphs display relative mRNA expression levels for various genes across three conditions: Control, Cefquinome, and Combination. Expression levels and significant differences are marked with asterisks. Each graph compares the expression of one gene, illustrating changes under different treatments.</alt-text>
</graphic>
</fig>
</sec>
<sec id="sec35">
<label>3.6</label>
<title>Functional validation of flagellar and iron metabolism</title>
<p>Based on the differential change pathway identified by transcriptomic sequencing, we conducted a swarming assay and an iron metabolism experiment to confirm whether this pathway caused phenotypic changes. Bacterial flagellar movement controls swarming, and the two-component system regulates iron metabolism. Swarming assays showed that palmatine restored cefquinome-impaired motility, with swarming diameters increasing from 6.83&#x202F;&#x00B1;&#x202F;1.26&#x202F;mm to 13.67&#x202F;&#x00B1;&#x202F;2.08&#x202F;mm (<italic>p</italic> &#x003C;&#x202F;0.05) (<xref ref-type="fig" rid="fig8">Figures 8a</xref>,<xref ref-type="fig" rid="fig8">b</xref>). Iron quantification revealed that palmatine normalized the Fe<sup>2+</sup>/total Fe ratio, which was significantly elevated by cefquinome treatment (78.69%&#x202F;&#x00B1;&#x202F;4.29% vs. 92.21%&#x202F;&#x00B1;&#x202F;4.52%, <italic>p</italic> &#x003C;&#x202F;0.05) (<xref ref-type="fig" rid="fig8">Figure 8c</xref>).</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption>
<p>Phenotypic validation tests based on transcriptome sequencing. <bold>(a,b)</bold> The addition of palmatine restores the swarming motility of <italic>E. coli</italic> E93 under the stress of cefquinome. <bold>(c)</bold> The addition of palmatine restores the iron metabolism level (Fe<sup>2+</sup> /total Fe) of <italic>E. coli</italic> E93 under the cefquinome stress. <bold>(d)</bold> The addition of taurine transport inhibitors (&#x03B2;-Alanine) eliminates the synergistic effect of palmatine and cefquinome. All experiments were performed with biological replicates and presented as mean &#x00B1; SD. Concentrations of palmatine, cefquinome, or combination drugs were at 0.25 MIC. One-way ANOVA among multiple groups was used to calculate <italic>p</italic>-values (&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.05, &#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.01, &#x002A;&#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.001). <bold>(e)</bold> Checkerboard broth microdilution assays between palmatine and cefquinome against <italic>E. coli</italic> SE-2, <italic>E. coli</italic> E57, and <italic>E. coli</italic> E93 in the presence or absence of &#x03B2;-alanin. The mean OD at 600&#x202F;nm of three biological replicates is presented.</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g008.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">(a) Bar chart showing swarming motility with three bars: normal control, cefquinome, and combination, highlighting significant differences. (b) Three petri dishes showing bacterial growth under normal control, cefquinome, and combination conditions. (c) Box plots depicting iron metabolism across different treatments, showing statistical significance. (d) Two microplate images comparing FICI values with and without &#x03B2;-Alanine, indicating synergy and indifference. (e) Six heatmaps for E. coli strains SE-2, 57, and 93, comparing the effects of cefquinome and palmatine, with and without &#x03B2;-Alanine, showing varying FICI values.</alt-text>
</graphic>
</fig>
</sec>
<sec id="sec36">
<label>3.7</label>
<title>Taurine metabolism mediates synergy</title>
<p>Our findings revealed a significant change in the synergistic effect when taurine uptake in the sulfur metabolic pathway of <italic>Escherichia coli</italic> was disrupted. The addition of &#x03B2;-alanine, a competitive inhibitor of taurine uptake, eliminated the synergistic effect of palmatine and cefquinome, shifting the FICI from 0.25&#x202F;&#x00B1;&#x202F;0.03 to 1.12&#x202F;&#x00B1;&#x202F;0.15 (<italic>p</italic> &#x003C;&#x202F;0.05) (<xref ref-type="fig" rid="fig8">Figures 8d</xref>,<xref ref-type="fig" rid="fig8">e</xref>). These results confirmed the critical role of taurine metabolism in the observed synergistic effect (<xref ref-type="table" rid="tab2">Table 2</xref>).</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Fractional inhibitory concentration index (FICI) of tested strains before and after the addition of &#x03B2;-Alanine (a competitive inhibitor of taurine).</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Isolates</th>
<th align="center" valign="top">FICI (&#x03B2;-Alanine&#x2212;)</th>
<th align="center" valign="top">FICI (&#x03B2;-Alanine+)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">E93</td>
<td align="center" valign="top">0.375, 0.3125, 0.140625</td>
<td align="center" valign="top">1.015625, 1.015625, 1.015625</td>
</tr>
<tr>
<td align="left" valign="top">E57</td>
<td align="center" valign="top">0.3125, 0.1875, 0.25</td>
<td align="center" valign="top">1.015625, 1.015625, 1.015625</td>
</tr>
<tr>
<td align="left" valign="top">SE-2</td>
<td align="center" valign="top">0.3125, 0.375, 0.5</td>
<td align="center" valign="top">1.0, 1.015625, 1.0</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec37">
<label>3.8</label>
<title><italic>In vivo</italic> antibacterial efficacy of palmatine-cefquinome combination</title>
<p>To evaluate the <italic>in vivo</italic> therapeutic potential of the palmatine-cefquinome combination, we established two murine models using <italic>E. coli</italic> 57 (ETEC): a systemic infection model (<xref ref-type="fig" rid="fig9">Figure 9a</xref>) and an ETEC diarrhea model (<xref ref-type="fig" rid="fig9">Figure 9c</xref>).</p>
<fig position="float" id="fig9">
<label>Figure 9</label>
<caption>
<p>Palmatine restores cefquinome activity in two mouse infection models. <bold>(a)</bold> In the mouse lethal dose model, the mice were infected with a lethal dose (ETEC) of cefquinome-resistant <italic>E. coli</italic> E93 and treated with a single dose of cefquinome, palmatine, or their combination at 2&#x202F;h post-infection and observed for 168&#x202F;h. <bold>(b)</bold> A combination of cefquinome (5&#x202F;mg&#x202F;kg<sup>&#x2212;1</sup>) and palmatine (10&#x202F;mg&#x202F;kg<sup>&#x2212;1</sup>) improved the survival rate of mice (<italic>n</italic>&#x202F;=&#x202F;10 per group) compared with other groups. <bold>(c)</bold> In the mouse diarrhea model, the mice were infected with cefquinome-resistant <italic>E. coli</italic> E57 at a certain dose (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S6</xref>; this dose caused diarrhea in all mice but did not cause acute death) and treated with a single dose of cefquinome, palmatine, or their combination at 2&#x202F;h post-infection. Data were collected after 24&#x202F;h. <bold>(d)</bold> The macroscopic pathological changes in mice 24&#x202F;h post-infection. <bold>(e)</bold> Body weight changes in mice before and after 24&#x202F;h of infection. <bold>(f)</bold> Pictures of loose stools on the filter paper for each group were used to assess the diarrhea situation. <bold>(g)</bold> Loose stool incidence rates, average loose stool grade, and diarrhea index were recorded to evaluate diarrhea status. All experiments were performed with biological replicates and are presented as mean &#x00B1; SD. One-way ANOVA among multiple groups was used to calculate <italic>p</italic>-values (&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.05, &#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.01, &#x002A;&#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.001).</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g009.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Diagram explaining two mouse models for Enterotoxigenic E. coli treatment: lethal dose and diarrhea. Graph b shows survival rates with different treatments. Image d compares infected intestines. Graph e displays body weight changes. Images f show stool samples by treatment. Graph g presents data on loose stool incidence, grading, and diarrhea index.</alt-text>
</graphic>
</fig>
<p>Systemic infection model: During the 7-day observation period, all mice in the untreated control and palmatine monotherapy groups succumbed to infection. In contrast, the combination of palmatine and cefquinome significantly improved survival rates from 30% (cefquinome alone) to 60% (<xref ref-type="fig" rid="fig9">Figure 9b</xref>).</p>
<p>ETEC diarrhea model: Mice in the combination group exhibited the least weight loss and differed significantly from those in the cefquinome monotherapy group (<italic>p</italic> &#x003C;&#x202F;0.001) within 24&#x202F;h post-infection (<xref ref-type="fig" rid="fig9">Figure 9e</xref>). Histopathology (HE staining) supported reduced tissue damage in combo-treated mice (<xref ref-type="supplementary-material" rid="SM3">Supplementary Figure S3</xref>). The incidence of loose stools (LSIR) (<italic>p</italic> &#x003C;&#x202F;0.05), the mean loose stools grade (ALSG) (<italic>p</italic> &#x003C;&#x202F;0.05), and the diarrhea index (<italic>p</italic> &#x003C;&#x202F;0.01) were lowest among all groups and were significantly lower than in the control group. At the same time, there was no significant difference in the cefquinome monotherapy group (<italic>p</italic> &#x003E;&#x202F;0.05) (<xref ref-type="fig" rid="fig9">Figures 9f</xref>,<xref ref-type="fig" rid="fig9">g</xref>).</p>
<p>Quantification of bacterial loads in key tissues demonstrated that the combination treatment significantly reduced colonization in the jejunum (<italic>p</italic> &#x003C;&#x202F;0.05), ileum (<italic>p</italic> &#x003C;&#x202F;0.01), blood (<italic>p</italic> &#x003C;&#x202F;0.01), and liver (<italic>p</italic> &#x003C;&#x202F;0.05) compared to the cefquinome monotherapy group (<xref ref-type="fig" rid="fig10">Figure 10</xref>). These findings collectively demonstrate that palmatine potentiates the antibacterial activity of cefquinome in vivo, effectively mitigating ETEC-induced systemic infection and diarrheal pathology while enhancing bacterial clearance.</p>
<fig position="float" id="fig10">
<label>Figure 10</label>
<caption>
<p>Palmatine restores cefquinome activity to lower bacterial load and tissue damage in the infected mice. At 24&#x202F;h post-infection, mice infected with <italic>E. coli</italic> 57 were euthanized, and bacterial loads were determined in the blood, liver, jejunum, and ileum. All experiments were performed with biological replicates and presented as mean &#x00B1; SD. One-way ANOVA among multiple groups was used to calculate <italic>p</italic>-values (&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.05, &#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.01, &#x002A;&#x002A;&#x002A;<italic>p</italic>&#x202F;&#x003C;&#x202F;0.001).</p>
</caption>
<graphic xlink:href="fmicb-16-1644399-g010.tif" mimetype="image" mime-subtype="tiff">
<alt-text content-type="machine-generated">Four scatter plots show bacterial counts (log10 CFUs) in different tissues: Blood, Liver, Jejunum, and Ileum. Each plot compares four treatments: Control, Palmatine, Ceftiofur, and Combination. Data points are color-coded and aligned horizontally, with significant differences marked by asterisks. Blood and Liver show notable reductions in bacterial counts for the Combination treatment. Jejunum and Ileum also show significant reductions with the Combination treatment, marked with various significance levels.</alt-text>
</graphic>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="sec38">
<label>4</label>
<title>Discussion</title>
<sec id="sec39">
<label>4.1</label>
<title>The emerging role of phytochemical adjuvants in combating antibiotic resistance</title>
<p>The global health crisis posed by multidrug-resistant Gram-negative bacteria demands urgent, innovative solutions (<xref ref-type="bibr" rid="ref34">Ruegsegger et al., 2022</xref>; <xref ref-type="bibr" rid="ref40">Tamma and Simner, 2018</xref>). With &#x03B2;-lactams losing efficacy against rapidly evolving resistance mechanisms (<xref ref-type="bibr" rid="ref19">Kim et al., 2017</xref>; <xref ref-type="bibr" rid="ref27">L&#x00F3;pez-J&#x00E1;come et al., 2022</xref>), the agricultural use of cephalosporins contributes to the dissemination of zoonotic resistance genes, particularly in veterinary cephalosporins such as the sole fourth-generation cefquinome. Palmatine&#x2019;s ability to restore drug efficacy in animal-derived strains may disrupt this transmission chain. Adjuvant therapy emerges as a strategic countermeasure (<xref ref-type="bibr" rid="ref35">Scientific Advisory Group on Antimicrobials of the Committee for Medicinal Products for Veterinary Use, 2009</xref>). This approach leverages existing antibiotics while reducing the pressure to develop resistance, which is a critical advantage given the stagnation in novel antibiotic discovery (<xref ref-type="bibr" rid="ref50">Wright, 2016</xref>).</p>
<p>Our study identifies palmatine, a bioactive isoquinoline alkaloid from <italic>Fibraurea recisa</italic> Pierre, as a potent synergist for cefquinome against resistant <italic>E. coli</italic>. While previous studies have established palmatine&#x2019;s inhibition of <italic>Helicobacter pylori</italic> and <italic>Escherichia coli</italic>, and its efflux pump inhibition against <italic>Pseudomonas aeruginosa</italic>, we reveal novel mechanisms underlying its synergistic effect with &#x03B2;-lactams (<xref ref-type="bibr" rid="ref1">Aghayan et al., 2017</xref>; <xref ref-type="bibr" rid="ref8">Chen et al., 2020</xref>; <xref ref-type="bibr" rid="ref33">Rong et al., 2016</xref>; <xref ref-type="bibr" rid="ref46">Wang P. et al., 2020</xref>). Crucially, this synergistic effect transcends specific resistance phenotypes or genotypes, showing consistent potentiation even in reference strains&#x2014;a finding with broad therapeutic implications.</p>
</sec>
<sec id="sec40">
<label>4.2</label>
<title>Mechanistic insights into synergistic action</title>
<p>Palmatine significantly enhanced cefquinome&#x2019;s membrane-disruptive capacity at sub-inhibitory concentrations (0.25&#x202F;&#x00D7;&#x202F;MIC), inducing 1.4-fold greater depolarization and a 42% increase in permeability. This membrane destabilization complements &#x03B2;-lactams&#x2019; inhibition of cell wall synthesis, creating a dual structural compromise. Furthermore, the combination generated 9.7-fold higher ROS levels than cefquinome monotherapy, exacerbating oxidative damage&#x2014;a critical factor in bacterial clearance.</p>
<p>Biofilm analysis revealed that palmatine reduced biofilm formation by 36.34% at sub-MIC levels, whereas cefquinome alone showed no effect. The combination further increased biofilm-associated cell death by 9.33%, suggesting that palmatine disrupts this key resistance mechanism. Transcriptomic profiling revealed reversals in several vital pathways: cefquinome upregulated two-component systems and influenced the expression of ABC transporters&#x2014;known resistance mediators (<xref ref-type="bibr" rid="ref2">Azi et al., 2022</xref>; <xref ref-type="bibr" rid="ref23">Liu et al., 2020</xref>)&#x2014;while downregulating flagellar assembly and sulfur metabolism. Palmatine cotreatment reversed all these adaptations, normalizing nine flagellar genes and seven sulfur metabolism genes to baseline expression levels.</p>
</sec>
<sec id="sec41">
<label>4.3</label>
<title>Resistance modulation and metabolic reversal</title>
<p>The observed trade-off between flagellar motility and antibiotic resistance supports the resource-allocation theory of microbial physiology. By forcing bacteria to divert energy toward flagellar assembly, palmatine disrupts the metabolic resources needed for efflux pump expression and biofilm matrix production (<xref ref-type="bibr" rid="ref29">Lyu et al., 2021</xref>)&#x2014;a vulnerability that can be exploited to reverse resistance.</p>
<p>The role of two-component systems (TCS) pathways as environmental sensors and resistance mediators was particularly evident (Azi et al., 2022; <xref ref-type="bibr" rid="ref10">Diagne et al., 2022</xref>). Palmatine suppressed cefquinome-induced TCS upregulation, potentially disrupting bacterial stress adaptation. Studies have shown that sulfur metabolism is severely inhibited under &#x03B2;-lactam stress (<xref ref-type="bibr" rid="ref4">Bie et al., 2023</xref>).</p>
<p>Palmatine effectively reverse-transcribes changes in this pathway, suggesting that metabolic resetting may be a new mechanism for regulating bacterial resistance. The disappearance of the synergistic effect was confirmed by functional inhibition of sulfur metabolism, thereby confirming the key role of this pathway. However, there are few studies on sulfur metabolism at present. To the best of our knowledge, this is the first time that restoring regulatory levels in sulfur metabolism has been associated with the enhanced antimicrobial effects of &#x03B2;-lactams against Gram-negative pathogens. In future research, we need to further investigate the in-depth mechanisms underlying sulfur metabolism regulation and bacterial resistance, providing theoretical support for preventing and controlling antibiotic resistance from a new perspective.</p>
</sec>
<sec id="sec42">
<label>4.4</label>
<title>Innovative perspectives on resistance mechanisms</title>
<p>Our research reveals three significant findings: Palmatine synergistically enhances &#x03B2;-lactams&#x2019; membrane-disruptive activity by altering membrane dynamics. By forcing energy reallocation from resistance mechanisms to motility, the upregulation of flagellar genes (seven genes restored) breaks the trade-off that bacteria face when allocating energy in response to antibiotic stress&#x2014;an evolutionary trap that increases antibiotic sensitivity. Under antibiotic stress, the recovery of sulfur metabolism disrupts the bacteria&#x2019;s survival strategy and diminishes their ability to withstand it.</p>
</sec>
<sec id="sec43">
<label>4.5</label>
<title>Therapeutic implications and future directions</title>
<p>According to this study, palmatine is a multi-target adjuvant that can reverse bacterial metabolic adaptations to antibiotic stress, interfere with biofilm defenses, and circumvent efflux pump resistance. A new research paradigm has emerged, recognizing that &#x03B2;-lactam resistance is linked to sulfur metabolism. Although earlier research concentrated on membrane proteins and efflux mechanisms (<xref ref-type="bibr" rid="ref3">Benameur et al., 2019</xref>; <xref ref-type="bibr" rid="ref47">Wang et al., 2021</xref>), our results show that metabolic pathways are valuable candidates for reversing resistance. The alterations in &#x03B2;-lactam resistance in bacteria will be investigated by expressing and knocking down sulfur metabolic pathway genes using molecular biology of sulfur. Future research should focus on confirming the impact of sulfur metabolism on antibacterial activity in Enterobacteriaceae <italic>in vivo</italic> and on investigating how iron homeostasis and two-component systems influence bacterial resistance to antibiotics.</p>
</sec>
</sec>
<sec sec-type="conclusions" id="sec44">
<label>5</label>
<title>Conclusion</title>
<p>Palmatine has been confirmed to have a new pharmacological effect: synergistically enhancing the antibacterial activity of the fourth-generation cephalosporin against <italic>E. coli</italic>. It could potentiate cefquinome through membrane disruption, ROS stimulation, and metabolic reset. This study moves phytochemical adjuvants from the identification of combination medications to the elucidation of their synergistic mechanisms. Given the lack of prior research in this field, uncovering the link between sulfur metabolism and bacterial resistance offers a new avenue for combating &#x03B2;-lactam resistance. Such logical adjuvant strategies provide a sustainable way to prolong the lifespan of antibiotics while addressing the resistance crisis.</p>
</sec>
<sec id="sec45">
<label>6</label>
<title>Statement on use</title>
<p>Fibraureae Caulis, the dried vine stem of Fibraurea recisa, has a rich history of use in traditional Chinese medicine. It was first recorded in <italic>The Compendium of Materia Medica</italic> and in the Qing Dynasty&#x2019;s <italic>Lu Chuan Herbal Medicine</italic>. It exhibits efficacy in purging heat and detoxifying, relieving constipation, promoting urination, and reducing swelling. It is used to treat constipation due to heat stagnation, dysentery, edema, abscesses, sores, carbuncles, and red eyes. Additionally, <italic>Guangxi Chinese Herbal Medicine</italic> records its efficacy in clearing heart fire and promoting urination, as well as its use in treating dysentery, acute gastroenteritis, acute tonsillitis, pharyngitis, conjunctivitis, tuberculosis, furuncles, scalds, and burns. For internal use, it is decocted in water with a daily dosage of 6&#x2013;12&#x202F;g. Palmatine is the main chemical component of Fibraureae Caulis and the main active ingredient. Palmatine&#x2019;s effectiveness and safety have been fully recognized, and it is included in the <italic>Chinese Pharmacopeia</italic> (2020, Volume 1, page 433). Palmatine is used to treat infections, including gynecological inflammation, surgical infections, bacillary dysentery, and enteritis.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="sec46">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found at: <ext-link xlink:href="https://www.ncbi.nlm.nih.gov/genbank/" ext-link-type="uri">https://www.ncbi.nlm.nih.gov/genbank/</ext-link>, CP112988, CP112989, CP112990, CP112991, CP112992, and CP112993.</p>
</sec>
<sec sec-type="ethics-statement" id="sec47">
<title>Ethics statement</title>
<p>The animal study was approved by Northwest A&#x0026;F University&#x2019;s laboratory animal management policies and the Guidelines for the Care and Use of Laboratory Animals (ISBN-10:0-309-15396-4). The study was conducted in accordance with the local legislation and institutional requirements.</p>
</sec>
<sec sec-type="author-contributions" id="sec48">
<title>Author contributions</title>
<p>YZ: Data curation, Writing &#x2013; review &#x0026; editing, Methodology, Validation, Writing &#x2013; original draft. YT: Writing &#x2013; review &#x0026; editing, Data curation, Methodology. PL: Writing &#x2013; review &#x0026; editing, Data curation, Methodology. LZ: Writing &#x2013; review &#x0026; editing. HZ: Writing &#x2013; review &#x0026; editing, Data curation. HX: Data curation, Writing &#x2013; review &#x0026; editing, Methodology. SN: Writing &#x2013; review &#x0026; editing. WL: Supervision, Writing &#x2013; review &#x0026; editing. MF: Writing &#x2013; review &#x0026; editing, Data curation, Methodology. JW: Project administration, Writing &#x2013; review &#x0026; editing, Supervision. SQ: Methodology, Supervision, Writing &#x2013; review &#x0026; editing, Resources. XW: Validation, Writing &#x2013; review &#x0026; editing, Resources, Methodology, Supervision. WZ: Project administration, Data curation, Resources, Methodology, Writing &#x2013; review &#x0026; editing, Funding acquisition, Supervision.</p>
</sec>

<sec sec-type="COI-statement" id="sec50">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="sec51">
<title>Generative AI statement</title>
<p>The author(s) declare that no Gen AI was used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p>
</sec>
<sec sec-type="disclaimer" id="sec52">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="sec53">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2025.1644399/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2025.1644399/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Image_1.tif" id="SM1" mimetype="image/tiff" xmlns:xlink="http://www.w3.org/1999/xlink"><label>SUPPLEMENTARY FIGURE S1</label><caption><p>Drug resistance gene in tested bacterial strains. Drug resistance genes carried in 19 strains of <italic>Escherichia coli</italic>. Detected genes were marked with blue squares.</p></caption></supplementary-material>
<supplementary-material xlink:href="Image_2.tif" id="SM2" mimetype="image/tiff" xmlns:xlink="http://www.w3.org/1999/xlink"><label>SUPPLEMENTARY FIGURE S2</label><caption><p>Whole genome sequences of <italic>E. coli</italic> E93. Circular genome map of <italic>E. coli</italic> E93.</p></caption></supplementary-material>
<supplementary-material xlink:href="Image_3.tif" id="SM3" mimetype="image/tiff" xmlns:xlink="http://www.w3.org/1999/xlink"><label>SUPPLEMENTARY FIGURE S3</label><caption><p>Palmatine rescues cefquinome activity to reduce damage on tissue in infected mice. Histopathology of the jejunum tissues from <italic>E. coli</italic> 57 infected mice were assessed.</p></caption></supplementary-material>
<supplementary-material xlink:href="Image_4.TIF" id="SM4" mimetype="image/TIFF" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Data_Sheet_1.pdf" id="SM5" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table_1.docx" id="SM6" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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<fn-group>
<fn id="fn0001" fn-type="custom" custom-type="edited-by"><p>Edited by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2834962/overview">Amira Zairi</ext-link>, University of Sousse, Tunisia</p></fn>
<fn id="fn0002" fn-type="custom" custom-type="reviewed-by"><p>Reviewed by: <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1904643/overview">Dexi Li</ext-link>, Henan Agricultural University, China</p>
<p><ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/3227284/overview">Hena Khatoon</ext-link>, Universiti Putra Malaysia, Malaysia</p></fn>
</fn-group>
<fn-group>
<fn fn-type="abbr" id="abbrev1">
<label>Abbreviations:</label>
<p>TCM, Traditional Chinese Medicine; <italic>E. coli, Escherichia coli</italic>; ETEC, Enterotoxigenic Escherichia coli; MDR, Multi-drug resistant; CLSI, Clinical and Laboratory Standards Institute; MIC, Minimum Inhibitory Concentration; ICI, Fractional Inhibitory Concentration Index; SCM, Laser Scanning Confocal Microscopy; SEM, Scanning electron microscopy; WGS, Whole Genome Sequencing; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; RT-qPCR, Real-time quantitative polymerase chain reaction; LSIR, The loose stool incidence rate; LSG, The loose stool grade; ALSG, The average loose stool grade.</p>
</fn>
</fn-group>
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</article>