<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2024.1496843</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Enhanced biosorption of cadmium ions on immobilized surface-engineered yeast using cadmium-binding peptides</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Wang</surname> <given-names>Songting</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn0001"><sup>&#x2020;</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Sun</surname> <given-names>Yongmei</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn0001"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2848145/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Shihong</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Fan</surname> <given-names>Chunkun</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Daojie</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/508848/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Liu</surname> <given-names>Fei</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1048301/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/project-administration/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Zhang</surname> <given-names>Haiyan</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/498142/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>School of Life Sciences, Henan University</institution>, <addr-line>Kaifeng</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Engineering Research Center for Applied Microbiology of Henan Province</institution>, <addr-line>Kaifeng</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Institute of Agriculture Research, Tibet Academy of Agricultural and Animal Husbandry Science</institution>, <addr-line>Tibet</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0002">
<p>Edited by: Prayad Pokethitiyook, Mahidol University, Thailand</p>
</fn>
<fn fn-type="edited-by" id="fn0003">
<p>Reviewed by: Bulgariu Laura, Gheorghe Asachi Technical University of Ia&#x0219;i, Romania</p>
<p>Xizi Long, National Institute for Materials Science, Japan</p>
<p>Toemthip Poolpak, Mahidol University, Thailand</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Haiyan Zhang, <email>zhanghy150@sina.com</email></corresp>
<fn fn-type="equal" id="fn0001">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>15</day>
<month>11</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1496843</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>09</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>05</day>
<month>11</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Wang, Sun, Wang, Fan, Wang, Liu and Zhang.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Wang, Sun, Wang, Fan, Wang, Liu and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>A new type of cadmium (Cd) ion cell surface adsorbent was developed by integrating bacteriophage display peptide library technology with cell surface display technology. Cd<sup>2+</sup> chelating resin served as the target molecule in screening experiments, leading to the identification of four Cd<sup>2+</sup>&#x2009;&#x2212;binding peptides. These peptides were introduced into <italic>Saccharomyces cerevisiae</italic> via the pYD1 plasmid using lithium acetate heat shock transformation. Adsorption efficiency tests indicated that the engineered yeasts adsorbed more Cd<sup>2+</sup> than the control strain EBY100 when exposed to the same amount of Cd<sup>2+</sup>. Among these peptides, sequence 3-containing strain was demonstrated to have the highest Cd<sup>2+</sup> adsorption efficiency, being 35% higher than the control strain. Additionally, when this recombinant yeast strain was immobilized using sodium alginate, the adsorption efficiency was increased by 55.7% compared to the control strain.</p>
</abstract>
<kwd-group>
<kwd>cadmium-binding peptide</kwd>
<kwd>phage peptide library</kwd>
<kwd>biosorption</kwd>
<kwd>surface-engineered yeast</kwd>
<kwd>immobilization</kwd>
</kwd-group>
<counts>
<fig-count count="5"/>
<table-count count="7"/>
<equation-count count="0"/>
<ref-count count="32"/>
<page-count count="9"/>
<word-count count="5834"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Microbiotechnology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<title>Introduction</title>
<p>Heavy metal pollution is a global environmental concern (<xref ref-type="bibr" rid="ref16">Meena et al., 2018</xref>; <xref ref-type="bibr" rid="ref21">Rahman and Singh, 2019</xref>). Unlike organic pollutants, heavy metals cannot be biodegraded but can only undergo changes in morphological and valence, migration, and transformation within the environment or food chain (<xref ref-type="bibr" rid="ref12">Li et al., 2021</xref>). Among the various heavy metals, Cadmium (Cd) is particularly problematic due to its severe and difficult-to-control environmental pollution, making it a critical focus in environmental management research (<xref ref-type="bibr" rid="ref22">Rizwan et al., 2016</xref>). The traditional treatment technology of cadmium wastewater is mainly achieved by chemical precipitation, ion exchange, evaporation concentration and adsorption (<xref ref-type="bibr" rid="ref8">Lee et al., 2024</xref>; <xref ref-type="bibr" rid="ref13">Liang et al., 2022</xref>; <xref ref-type="bibr" rid="ref27">Soudani et al., 2022</xref>; <xref ref-type="bibr" rid="ref1">Arsenie et al., 2022</xref>). These methods have the disadvantages of large investment, high consumption cost, complicated processing technology, and secondary pollution.</p>
<p>Microbial remediation technology uses microorganisms as adsorbents, which has the advantages of strong specificity, no secondary pollution, easy operation and low cost (<xref ref-type="bibr" rid="ref9">Leong and Chang, 2020</xref>; <xref ref-type="bibr" rid="ref2">Choudhury and Chatterjee, 2022</xref>; <xref ref-type="bibr" rid="ref15">Maqsood et al., 2022</xref>). However, the study of microbial adsorption of cadmium wastewater is still in small-scale experiment and difficult to be applied in practice. Therefore, it is particularly important to further develop new and efficient biological adsorbents to improve the adsorption capacity of microbial cells for heavy metal ions. The combination of cell surface display and microbial adsorbents has become a powerful strategy for environmental management (<xref ref-type="bibr" rid="ref14">Liu et al., 2016</xref>). The expression of heterologous metal-binding proteins or peptides on the cell surface through microbial cell surface display systems can specifically bind heavy metals and improve the resistance of microorganisms to metals and cell adsorption capacity. Recently, the combination of microbial metal-binding proteins with surface expression systems has been used to treat heavy metal wastewater, many microorganisms such as <italic>Thiobacillus ferrooxidans</italic>, <italic>Escherichia coli</italic>, and <italic>Pseudomonas</italic> are used as biological adsorbents for wastewater containing cadmium (<xref ref-type="bibr" rid="ref28">Su et al., 2022</xref>; <xref ref-type="bibr" rid="ref11">Li et al., 2021</xref>; <xref ref-type="bibr" rid="ref17">Meng et al., 2021</xref>). Compared with the bacterial system (<xref ref-type="bibr" rid="ref30">Valls et al., 2000</xref>; <xref ref-type="bibr" rid="ref23">Samuelson et al., 2000</xref>), the yeast display system has the advantages of protein modification and processing in yeast occurs after translation (<xref ref-type="bibr" rid="ref24">Savastru et al., 2022</xref>).</p>
<p>In addition to considering how to improve the adsorption of heavy metal ions, another problem is how to adsorb cadmium ions efficiently and selectively from wastewater (<xref ref-type="bibr" rid="ref19">Pande et al., 2010</xref>). This method enables rapid screening of highly binding to the target and binding to any specific target, including bioactive peptides, proteins, receptors, etc.</p>
<p>However, the application of recombinant bioadsorbents may be problematic due to the complexity of wastewater (<xref ref-type="bibr" rid="ref7">Kang et al., 2014</xref>). To solve this problem, cell immobilization is a good solution strategy. Because the adsorption of immobilized cells depends on the metal chelation of the peptide, the surface display peptide can still absorb metal ions even if the prepared cells lose their activity. This not only solves the toxicity of complex pollutants to cells, but also facilitates their practical application in factories. At the same time, the immobilized microbial adsorbents can chelate metal ions and accumulate them on the cell surface, and the metal ions can be eluted off without breaking the bacterial cells by only using the eluent, which facilitates the recycling of metal ions and improves the treatment effect of wastewater containing cadmium heavy metals (<xref ref-type="bibr" rid="ref6">Juarez Jimenez et al., 2012</xref>).</p>
<p>While phage library screening for metal-binding peptides has been widely reported, most studies have focused on commonly occurring heavy metals such as Ni and Zn (<xref ref-type="bibr" rid="ref4">Day et al., 2013</xref>; <xref ref-type="bibr" rid="ref20">Patwardhan et al., 1997</xref>; <xref ref-type="bibr" rid="ref18">Mooney et al., 2011</xref>). There is limited research on the screening of metal-binding peptides for highly toxic metals like Cd<sup>2+</sup>. In this study, <italic>S. cerevisiae</italic> was selected as the research strain, aiming to screen out Cd<sup>2+</sup>ion-binding peptides with strong binding force and high specificity from phage random peptide library, and display these binding peptides on the surface of <italic>S. cerevisiae</italic>, in order to prepare new Cd<sup>2+</sup>ion-binding peptide microbial cell surface adsorbents.</p>
</sec>
<sec sec-type="materials|methods" id="sec2">
<title>Materials and methods</title>
<sec id="sec3">
<title>Media and solutions</title>
<p>The following culture media were used for the study: Luria-Bertani (LB) medium, top agar, yeast extract-peptone-dextrose (YPD) medium, MD selective medium [also known as yeast nitrogen base (YNB) medium], and yeast nitrogen base-casamino acids (YNB-CAA) medium.</p>
<p>The following microbial strains were used for the study: <italic>E. coli</italic> ER2738, random phage display library (phage display 12-mer peptide library), <italic>E. coli</italic> 116, and <italic>S. cerevisiae</italic> EBY100.</p>
<p>The pMD-T vector was obtained from Takara for initial cloning of PCR products, and <italic>S. cerevisiae</italic> EBY100 and the pYD1 plasmid were purchased from Beijing Zhongke Quality Inspection Biotechnology Co., Ltd. The primers for phage sequencing were provided by the Phage Randomized Library Kit (New England Biolabs), and additional primers were synthesized by Jinweizhi Biotechnology Co., Ltd (<xref ref-type="fig" rid="fig1">Figure 1</xref>; <xref ref-type="table" rid="tab1">Table 1</xref>).</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Profile of the pYD1 plasmid.</p>
</caption>
<graphic xlink:href="fmicb-15-1496843-g001.tif"/>
</fig>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Primers used in the study.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Name</th>
<th align="left" valign="top">Sequence 5&#x2032;&#x2009;&#x2192;&#x2009;3&#x2032;</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">-28gIII sequencing primer</td>
<td align="left" valign="middle">HOGTATGGGATTTTGCTAAACAAC</td>
</tr>
<tr>
<td align="left" valign="middle">-96gIII sequencing primer</td>
<td align="left" valign="middle">HOCCCTCATAGTTAGCGTACG</td>
</tr>
<tr>
<td align="left" valign="middle">pYD1-Forward</td>
<td align="left" valign="middle">AGTAACGTTTGTCAGTAATTGC</td>
</tr>
<tr>
<td align="left" valign="middle">pYD1-Reverse</td>
<td align="left" valign="middle">GTCGATTTTGTTACATCTACAC</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Restriction endonucleases <italic>Eco</italic>RI and <italic>Xho</italic>I supplied by Fermentas were mainly used for the DNA digestion. RNaseA enzyme (Merck) was used during plasmid extraction. Taq DNA polymerase and Phusion DNA Polymerase were purchased from Shanghai Lifefeng Biotechnology Co., Ltd., used for PCR amplification. Ligase was purchased from Takara.</p>
</sec>
<sec id="sec4">
<title>Preparation of Cd<sup>2+</sup> ion chelating resin</title>
<p>Ni-NTA agarose resin (200&#x2009;&#x03BC;L) was rinsed twice with 500&#x2009;&#x03BC;L Tris-buffered saline (TBS; 150&#x2009;mmol/L Tris&#x2013;HCl [pH 7.2], 150&#x2009;mmol/L NaCl). Following the washes, 0.5&#x2009;mol/L EDTA (pH 8.0) was added to the resin. The resin was then washed until its color changed from light blue to colorless. Subsequently, the resin was washed three times with 0.1% TBST (TBS with 0.1% Tween 20). Cd<sup>2+</sup> were then added to the resin and incubated overnight. The resin was centrifuged and washed three times with TBS, followed by mixing with 0.1% TBST. The prepared Cadmium ion chelating resin (M<sup>+</sup>) was stored at 4&#x00B0;C. For the control (M<sup>&#x2212;</sup>), the resin was treated with sterilized ultrapure water instead of Cd<sup>2+</sup>.</p>
</sec>
<sec id="sec5">
<title>Phage display library screening</title>
<sec id="sec6">
<title>Phage display biopanning</title>
<p>One hundred microliters each of M<sup>+</sup> and M<sup>&#x2212;</sup> resins were placed in separate centrifuge tubes and washed twice with 1,000&#x2009;&#x03BC;L of 0.1% TBST (pH 7.4). Subsequently, each tube was mixed with 10&#x2009;&#x03BC;L of the phage display peptide library (2&#x2009;&#x00D7;&#x2009;10<sup>11</sup> PFU/mL) and incubated for 1&#x2009;h at 25&#x00B0;C. Unbound or loosely bound phages were removed by washing twice with 0.1% TBST. Tightly bound phages were eluted using 500&#x2009;&#x03BC;L of 20&#x2009;mmol imidazole; the eluates were washed five times with 0.1% TBST and then eluted twice with 300&#x2009;&#x03BC;L of 200&#x2009;mmol imidazole. Next the eluted phages were amplified using <italic>E. coli</italic> ER2738 and purified by a polyethylene glycol precipitation. The phage titer was estimated, and the P/N value (number of M<sup>+</sup> phage panned/ number of M<sup>&#x2212;</sup> phage panned) was calculated. The eluates were amplified, the titers were measured. The same phage titer (2&#x2009;&#x00D7;&#x2009;10<sup>11</sup> PFU/mL) was used for the second round of screening under the same conditions. In the third round of screening, the eluate was washed four times with 0.3% TBST to reduce nonspecific interactions between the target molecule and the recombinant phage. After three rounds of screening, Cd<sup>2+</sup> ion-binding peptides with high specificity and affinity were obtained. Following elution, the phage was diluted and titrated on <italic>E. coli</italic> ER2738 plates. Phage clones forming a blue plaque were selected for DNA sequencing analysis.</p>
</sec>
<sec id="sec7">
<title>Phage tittering</title>
<p>The phages were amplified using the <italic>E. coli</italic> ER2738 strain. The eluted phage was serially diluted into four gradients: 10<sup>&#x2212;1</sup>&#x2009;CFU/g, 10<sup>&#x2212;2</sup>&#x2009;CFU/g, 10<sup>&#x2212;3</sup>&#x2009;CFU/g, and 10<sup>&#x2212;4</sup>&#x2009;CFU/g, with three replicates for each dilution. When the cultured <italic>E. coli</italic> ER2738 cells reached mid-logarithmic phase, 200&#x2009;&#x03BC;L of culture was aliquoted into centrifuge tubes,10&#x2009;&#x03BC;L of each phage dilution was added and the mixture was rapidly mixed by shaking and incubated at room temperature for 5&#x2009;min. The phage-infected <italic>E. coli</italic> ER2738 cells were transferred to the upper agar tube preheated at 45&#x00B0;C,swirled briefly then immediately poured onto LB/IPTG/X-gal plates and incubated overnight at 37&#x00B0;C. The number of blue phage plaques was counted to determine phage titer.</p>
<p>Phages were amplified in <italic>E. coli</italic> ER2738 cultured in LB that was supplemented with tetracycline. Ten microliter of phage washing solution was added to 20&#x2009;mL of ER2738 bacterial solution, and the culture was incubated at 37&#x00B0;C with shaking for 4.5&#x2009;h. The culture was then transferred to a 50&#x2009;mL centrifuge tube and centrifuged twice at 10,000&#x2009;rpm for 10&#x2009;min at 4&#x00B0;C. The phages in the supernatant were transferred to a clean EP tube and precipitated overnight at 4&#x00B0;C with 20% (w/v) polyethylene glycol-8000 in 2.5&#x2009;mol/L NaCl (PEG/NaCl). Next the phages were pelleted by centrifugation and resuspended in 1&#x2009;mL of TBS. Residual bacteria were pelleted by centrifugation (5&#x2009;min,14,000&#x2009;rpm),and the supernatant was further precipitated with PEG/NaCl. The obtained phages were then resuspended in 200&#x2009;&#x03BC;L of TBS and centrifuged to remove the impurities.</p>
</sec>
<sec id="sec8">
<title>Amplification and purification of phages</title>
<p>Phages were amplified in <italic>E. coli</italic> ER2738 cultured in LB medium supplemented with tetracycline (20&#x2009;g&#x2009;L<sup>&#x2212;1</sup>). After 4.5&#x2009;h of shaking at 37&#x00B0;C, bacteria were pelleted by centrifugation at 10&#x2009;min,10,000&#x2009;rpm. The phages in the supernatant were precipitated overnight at 4&#x00B0;C in 2.5&#x2009;mol/L PEG-8000-NaCl. The P/N value was calculated using the following equation: P/N&#x2009;=&#x2009;the number of M<sup>+</sup> phage panned (P)/the number of M<sup>&#x2212;</sup> phage panned (N).</p>
</sec>
<sec id="sec9">
<title>Plasmids construction and transformation in <italic>S. cerevisiae</italic> EBY100</title>
<p>According to the pYD1 plasmid map, restriction enzymes <italic>Eco</italic>RI and <italic>Xho</italic>I were used for digesting both pYD1 and the four Cd<sup>2+</sup>-binding peptide-encoding genes. The digested products were ligated with DNA ligase and transformed into <italic>E. coli</italic> 116. The positive transformants were verified using PCR and Sanger sequencing. Four Cd<sup>2+</sup> ion-binding peptide-encoding genes were synthesized artificially either separately or in combination (<italic>gE1</italic>-<italic>gE3</italic>-<italic>gE6</italic>-<italic>gE11</italic>) and inserted into pYD1 plasmid, resulting in the recombinant plasmids pYD1-<italic>gE1</italic>, pYD1-<italic>gE3</italic>, pYD1-<italic>gE6</italic>, and pYD1-<italic>gE11</italic>.</p>
<p><italic>S. cerevisiae</italic> EBY100 cells were cultured in YPD medium at 30&#x00B0;C until they reached an optical density of 0.6 at 600&#x2009;nm (OD<sub>600</sub>). The cells were then harvested to prepare competent cells for transformation using the heat-shock method. Briefly, 10&#x2009;&#x03BC;L of recombinant plasmid DNA, 700&#x2009;&#x03BC;L of 1&#x00D7; LiAc/10% polyethylene glycol 3350/1&#x00D7; Tris-EDTA buffer, 10&#x2009;&#x03BC;L of salmon sperm DNA, and <italic>S. cerevisiae</italic> EBY100 competent cells were mixed and incubated at 30&#x00B0;C for 30&#x2009;min. Subsequently, 88&#x2009;&#x03BC;L of dimethyl sulfoxide was added, and the mixture was incubated at 42&#x00B0;C for 7&#x2009;min. Following heat-shock transformation, the cells were plated on YNB (Trp<sup>&#x2212;</sup>and Leu<sup>+</sup>) medium and incubated at 30&#x00B0;C for 72&#x2009;h to select positive clones. Confirmation of positive transformants was performed by colony PCR amplification and restriction digestion of plasmid DNA isolated from clones. The recombinant plasmid DNA was retransformed into <italic>E. coli</italic> 116 cells to confirm the correct plasmid construction. Confirmed transformants were grown in YNB-CAA medium containing 20&#x2009;g&#x2009;L<sup>&#x2212;1</sup> glucose at 30&#x00B0;C overnight with shaking. The cells were then transferred to YNB-CAA medium containing 20&#x2009;g&#x2009;L<sup>&#x2212;1</sup> galactose and grown at 25&#x00B0;C with shaking until the OD<sub>600</sub> reached 0.6. The cells displaying Cd<sup>2+</sup> ion-binding peptides were harvested, and the binding capacity for Cd<sup>2+</sup> was calculated as the weight of adsorbed Cd (mg) per gram of yeast sample (g).</p>
</sec>
<sec id="sec10">
<title>Immobilization of <italic>S. cerevisiae</italic> cells</title>
<p>The yeast stock stored at &#x2212;80&#x00B0;C was thawed and plated on a YNB medium plate and then incubated for 36&#x2009;h. Single colonies were picked and inoculated into YPD medium, followed by overnight incubation at 30&#x00B0;C with shaking at 200&#x2009;rpm. A 2% inoculum of overnight culture was transferred into 100&#x2009;mL of fresh YPD medium and grown at 30&#x00B0;C with shaking at 200&#x2009;rpm until an OD<sub>600</sub> value of approximately 0.6 was reached. The cells was harvested by transferred centrifuge at 5,000&#x2009;rpm collected in a 50&#x2009;mL centrifuge tube. The collected cells were transferred to the YNB-CAA induction medium and incubated overnight at 30&#x00B0;C with shaking at 200&#x2009;rpm. The overnight-grown cells were then mixed with 1&#x2009;mL sterile water and combined with a pre-configured sodium alginate solution. The mixture was thoroughly blended and injected into sterile calcium chloride solution using a syringe and fixed at 20&#x00B0;C for 24&#x2009;h to prepare sodium alginate beads. The immobilized yeast beads were washed three times with sterile water and stored at 4&#x00B0;C until further use. To determine optimal fixation conditions, combinations of different concentrations of sodium alginate and calcium chloride, along with different temperatures were tested. Using of the single-factor experimental design, the concentrations of calcium chloride and sodium alginate, along with a fixed temperature, were selected as test variables. The adsorption ratio was considered as the response variable. An orthogonal experiment with three factors and three levels was conducted to further optimize the immobilization conditions of <italic>S. cerevisiae</italic> (<xref ref-type="bibr" rid="ref31">Zarei et al., 2017</xref>).</p>
</sec>
</sec>
<sec id="sec11">
<title>Statistical analysis</title>
<p>All experiments were performed in triplicate to ensure reproducibility. Data are represented as the mean&#x2009;&#x00B1;&#x2009;standard deviation (SD). Statistical significance was determined using a <italic>p</italic>-value threshold of &#x003C;0.05.</p>
</sec>
</sec>
<sec sec-type="results" id="sec12">
<title>Results</title>
<sec id="sec13">
<title>Screening of Cd<sup>2+</sup> ion-binding peptides from Ph.D.-12 peptide library</title>
<p>A peptide phage library was used to identify hexapeptide exhibiting cadmium binding properties. In the phage panning process, the titer of the phage eluted from M<sup>&#x2212;</sup> resin and M<sup>+</sup> resin was measured in each screening round. When the P/N value reached 50 or more than 60, specific sequence was obtained, and the phage was selected for sequencing. As shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>, phage clones were enriched, and specificity was gradually enhanced over the three rounds of screening. The phage screened in the third round exhibited strong specificity, with a P/N value of 56. This finding indicated that the binding peptide obtained had a strong affinity for Cd<sup>2+</sup> and could specifically bind to it in this round of screening.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Changes in the P/N values in the three rounds of screening.</p>
</caption>
<graphic xlink:href="fmicb-15-1496843-g002.tif"/>
</fig>
<p>The phages obtained in the third round of screening were sequenced, and 12 groups of screened phages were selected and sent for sequencing by Jinweizhi Biotechnology Co., Ltd. After removing incorrect or incomplete sequences, four coding genes for dodecapeptides with a strong Cd<sup>2+</sup> ion adsorption ability were identified and synthesized by Jinweizhi Biotechnology Co., Ltd. The results are shown in <xref ref-type="table" rid="tab2">Table 2</xref>.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Results of the sequencing analysis.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Sequence number</th>
<th align="left" valign="top">Sequence composition</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">1</td>
<td align="left" valign="top">ATG &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; CGG<break/>Met H P N A G H G S L M R</td>
</tr>
<tr>
<td align="left" valign="top">3</td>
<td align="left" valign="top">GCT &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; TCT<break/>A D W Y H W R S H S S S</td>
</tr>
<tr>
<td align="left" valign="top">6</td>
<td align="left" valign="top">GAT &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; ACT<break/>D Y N Y D R S D S R L T</td>
</tr>
<tr>
<td align="left" valign="top">11</td>
<td align="left" valign="top">ATG &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; &#x002A;&#x002A;&#x002A; GGG<break/>M&#x2009;F D G L Y G G E R P G</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec14">
<title>Display of Cd<sup>2+</sup> ion-binding peptides on <italic>S. cerevisiae</italic> EBY100 and Cd<sup>2+</sup> ion biosorption</title>
<p>In our study, plasmid pYD1 contains genes encoding the peptides <italic>gE1</italic>, <italic>gE3</italic>, <italic>gE</italic>6, and <italic>gE</italic>6 were transformed into <italic>S. cerevisiae</italic> EBY100 (EBY100/pYD1-<italic>gE1</italic>, EBY100/pYD1-<italic>gE3</italic>, EBY100/pYD1-<italic>gE</italic>6, EBY100/pYD1-<italic>gE</italic>6). The original <italic>S. cerevisiae</italic> EBY100 strain was used as a control. EBY100 cannot be grown in cultures lacking tryptophan, while recombinant EBY100 contains pYD1 plasmids that can be grown in cultures lacking tryptophan and the transformants were screened on the cultures lacking tryptophan. After preliminary identification of positive transformants, colony PCR was performed for further verification.</p>
<p>Positive clones were selected for colony PCR validation. The positive clones of <italic>S. cerevisiae</italic> containing plasmids pYD1-<italic>gE1</italic>, pYD1-<italic>gE3</italic>, pYD1-<italic>gE</italic>6, and pYD1-<italic>gE</italic>11 were randomly selected for single-colony PCR, yielding fragments of approximately 0.4&#x2009;kb (<xref ref-type="fig" rid="fig3">Figure 3</xref>). The size of the target band matched the expected size. Because the Cd<sup>2+</sup> ion-binding peptides are too short to differentiate between empty vectors and recombinant plasmids, gene fragments were sequenced after the colony PCR assay. The results showed that the <italic>gE1</italic>, <italic>gE3</italic>, <italic>gE</italic>6, and <italic>gE</italic>11 inserted correctly into <italic>S. cerevisiae</italic> EBY100.</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Confirmation of successful transformation of <italic>S. cerevisiae.</italic> M represents DNA Marker, 1 is <italic>gE1</italic> PCR fragment, 2 is <italic>gE3</italic> PCR fragment, 3 is <italic>gE6</italic> PCR fragment, and 4 is <italic>gE11</italic> PCR fragment.</p>
</caption>
<graphic xlink:href="fmicb-15-1496843-g003.tif"/>
</fig>
<p><italic>S. cerevisiae</italic> cells were inoculated into YNB medium and incubated with shaking. The cells were then collected, transferred to the induction medium, and cultured until an OD<sub>600</sub> value of 0.6 was achieved. Subsequently, 0.7&#x2009;g of Cd was added. The adsorption rate of the EBY100 series strains were determined at 6, 12, 18, and 24&#x2009;h, and the results were shown in <xref ref-type="fig" rid="fig4">Figure 4</xref>. After 24&#x2009;h of adsorption, the yeast and its recombinant yeast were centrifuged, and the remaining volume of the supernatant, the wet weight of yeast, and the cadmium concentration in the supernatant were determined. Each group was analyzed in triplicate, and the average value was calculated. The recovery rate of each sample was between 95 and 105%. As shown in <xref ref-type="table" rid="tab3">Table 3</xref>, except for <italic>S. cerevisiae</italic> which was transformed with the <italic>gE6</italic> sequence, the adsorption efficiency of other recombinant <italic>S. cerevisiae</italic> strains improved and was 35% higher than that of the control strain.</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Adsorption rate of EBY100 series strains over time.</p>
</caption>
<graphic xlink:href="fmicb-15-1496843-g004.tif"/>
</fig>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>Adsorption capacity of recombinant <italic>S. cerevisiae</italic> strains.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Strain</th>
<th align="center" valign="top">Amount of adsorption (g)</th>
<th align="center" valign="top">Wet weight of yeast (g)</th>
<th align="center" valign="top">Adsorption rate (mg/g)</th>
<th align="center" valign="top">Percentage improvement</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">EBY100</td>
<td align="center" valign="top">0.189</td>
<td align="center" valign="top">1.0</td>
<td align="center" valign="top">189</td>
<td align="center" valign="top">contrast</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE1</italic></td>
<td align="center" valign="top">0.257</td>
<td align="center" valign="top">1.0</td>
<td align="center" valign="top">257</td>
<td align="center" valign="top">35%(&#x00B1;1%)</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE3</italic></td>
<td align="center" valign="top">0.283</td>
<td align="center" valign="top">1.3</td>
<td align="center" valign="top">217</td>
<td align="center" valign="top">14.8%(&#x00B1;0.4%)</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE11</italic></td>
<td align="center" valign="top">0.178</td>
<td align="center" valign="top">0.9</td>
<td align="center" valign="top">198</td>
<td align="center" valign="top">4.7%(&#x00B1;0.2%)</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE6</italic></td>
<td align="center" valign="top">0.227</td>
<td align="center" valign="top">1.2</td>
<td align="center" valign="top">189.2</td>
<td align="center" valign="top">0.1%(&#x00B1;0.003%)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec15">
<title>Immobilization</title>
<p>Immobilized microbial adsorbents can chelate metal ions on the cell surface, which is convenient for the recycling or sequestration of Cd<sup>2+</sup> ions, improving the efficacy of heavy metal waste treatment. To determine the optimal yeast immobilization conditions and maximize the sorption of Cd<sup>2+</sup> ions by yeast cells, based on the data obtained from the single factor study, the effects of three independent variables, including the concentrations of calcium chloride (1.5&#x2013;2.5%) and sodium alginate (2.5&#x2013;3.5%), as well as temperature (15&#x2013;25&#x00B0;C) were investigated using an orthogonal test with three levels to optimize the immobilization of surface-engineered yeast (<xref ref-type="table" rid="tab4">Table 4</xref>).</p>
<table-wrap position="float" id="tab4">
<label>Table 4</label>
<caption>
<p>Factor/level schedule for the orthogonal experiment.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Factor/level</th>
<th align="center" valign="top">Calcium chloride concentration (%)</th>
<th align="center" valign="top">Sodium alginate concentration (%)</th>
<th align="center" valign="top">Fixed temperature (&#x00B0;C)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">1</td>
<td align="center" valign="top">1.5</td>
<td align="center" valign="top">2.5</td>
<td align="center" valign="top">15</td>
</tr>
<tr>
<td align="left" valign="top">2</td>
<td align="center" valign="top">2.0</td>
<td align="center" valign="top">3.0</td>
<td align="center" valign="top">20</td>
</tr>
<tr>
<td align="left" valign="top">3</td>
<td align="center" valign="top">2.5</td>
<td align="center" valign="top">3.5</td>
<td align="center" valign="top">25</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>As shown in <xref ref-type="table" rid="tab5">Tables 5</xref>, <xref ref-type="table" rid="tab6">6</xref>, the effect of these three factors on the ability of immobilized yeast cells to adsorb Cd<sup>2+</sup> ions was that sodium alginate concentration had the greatest effect on adsorb efficiency, followed by calcium chloride concentration, while fixed temperature had the least effect. By using a range analysis, the optimal immobilization conditions for yeast were determined as 2.0% calcium chloride, 3.0% sodium alginate, and a temperature of 25&#x00B0;C. Under these conditions, the adsorption ratio was 68%. The adsorption ratio was determined as the ratio of the adsorbed amount of Cd<sup>2+</sup> ions by immobilized yeast cells for 24&#x2009;h to the mass of initially added Cd<sup>2+</sup> ions.</p>
<table-wrap position="float" id="tab5">
<label>Table 5</label>
<caption>
<p>Optimization and analysis of conditions for the immobilized <italic>S. cerevisiae</italic> cells.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Treatment number</th>
<th align="center" valign="top">Calcium chloride concentration (%)</th>
<th align="center" valign="top">Sodium alginate concentration (%)</th>
<th align="center" valign="top">Fixed temperature (&#x00B0;C)</th>
<th align="center" valign="top">Blank column</th>
<th align="center" valign="top">Adsorption ratio (%)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">62.6667</td>
</tr>
<tr>
<td align="left" valign="middle">2</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">66.0000</td>
</tr>
<tr>
<td align="left" valign="middle">3</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">60.3333</td>
</tr>
<tr>
<td align="left" valign="middle">4</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">63.6667</td>
</tr>
<tr>
<td align="left" valign="middle">5</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">68.6667</td>
</tr>
<tr>
<td align="left" valign="middle">6</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">62.3333</td>
</tr>
<tr>
<td align="left" valign="middle">7</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">61.3333</td>
</tr>
<tr>
<td align="left" valign="middle">8</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">62.6667</td>
</tr>
<tr>
<td align="left" valign="middle">9</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">58.0000</td>
</tr>
<tr>
<td align="left" valign="top">K1</td>
<td align="center" valign="middle">189.0000</td>
<td align="center" valign="middle">187.6667</td>
<td align="center" valign="middle">187.6667</td>
<td align="center" valign="middle">189.3333</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">K2</td>
<td align="center" valign="middle">194.6667</td>
<td align="center" valign="middle">197.3333</td>
<td align="center" valign="middle">190.3333</td>
<td align="center" valign="middle">189.6667</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">K3</td>
<td align="center" valign="middle">182.0000</td>
<td align="center" valign="middle">180.6667</td>
<td align="center" valign="middle">187.6667</td>
<td align="center" valign="middle">186.6667</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">k1</td>
<td align="center" valign="middle">63.0000</td>
<td align="center" valign="middle">62.5556</td>
<td align="center" valign="middle">62.5556</td>
<td align="center" valign="middle">63.1111</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">k2</td>
<td align="center" valign="middle">64.8889</td>
<td align="center" valign="middle">65.7778</td>
<td align="center" valign="middle">63.4444</td>
<td align="center" valign="middle">63.2222</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">k3</td>
<td align="center" valign="middle">60.6667</td>
<td align="center" valign="middle">60.2222</td>
<td align="center" valign="middle">62.5556</td>
<td align="center" valign="middle">62.2222</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">R</td>
<td align="center" valign="middle">4.2222</td>
<td align="center" valign="middle">5.5556</td>
<td align="center" valign="middle">0.8889</td>
<td align="center" valign="middle">1.0000</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">Primary and secondary order</td>
<td align="center" valign="middle" colspan="5">B&#x003E;A&#x003E;C</td>
</tr>
<tr>
<td align="left" valign="top">Excellent level</td>
<td align="center" valign="middle" colspan="2">A2</td>
<td align="center" valign="top">B2</td>
<td align="center" valign="top" colspan="2">C2</td>
</tr>
<tr>
<td align="left" valign="top">Excellent combination</td>
<td align="center" valign="middle" colspan="5">A2B2C2</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="tab6">
<label>Table 6</label>
<caption>
<p>Variance analysis for the optimum immobilization condition.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Factor</th>
<th align="center" valign="top">Deviation sum of squares</th>
<th align="center" valign="top">Free degree</th>
<th align="center" valign="top">Mean square</th>
<th align="center" valign="top"><italic>F</italic>-value</th>
<th align="center" valign="top"><italic>p</italic>-value</th>
<th align="center" valign="top">Significance</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Calcium chloride concentration (%)</td>
<td align="center" valign="middle">26.8395</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">13.4198</td>
<td align="center" valign="middle">14.8904</td>
<td align="center" valign="middle">0.0629</td>
<td align="center" valign="middle" rowspan="4"><italic>P</italic> &#x003C;&#x2009;0.05</td>
</tr>
<tr>
<td align="left" valign="top">Sodium alginate concentration (%)</td>
<td align="center" valign="middle">46.6914</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">23.3457</td>
<td align="center" valign="middle">25.9041</td>
<td align="center" valign="middle">0.0372</td>
</tr>
<tr>
<td align="left" valign="top">Fixed temperature (&#x00B0;C)</td>
<td align="center" valign="middle">1.5802</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">0.7901</td>
<td align="center" valign="middle">0.8767</td>
<td align="center" valign="middle">0.5328</td>
</tr>
<tr>
<td align="left" valign="middle">Error</td>
<td align="center" valign="middle">1.8025</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">0.9012</td>
<td align="center" valign="middle">1.0000</td>
<td align="center" valign="middle">0.5000</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Five strains of <italic>S. cerevisiae</italic> were immobilized with sodium alginate gels at a mass-to-volume ratio of 1:100. To determine the adsorption effect of the immobilized yeast cells, 0.7&#x2009;g Cd<sup>2+</sup> was added to 100&#x2009;mL medium (<xref ref-type="fig" rid="fig5">Figure 5</xref>). As shown in <xref ref-type="table" rid="tab7">Table 7</xref>, except for the EBY100<italic>-gE6</italic> strain, the other strains exhibited good adsorption capacities of up to 55.7%. This finding demonstrated that the immobilized yeast cells had good adsorption performance. The recovery rate of spiking was between 95 and 105% based on calculations for each individual sample.</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Immobilized cells after Cd<sup>2+</sup> adsorption.</p>
</caption>
<graphic xlink:href="fmicb-15-1496843-g005.tif"/>
</fig>
<table-wrap position="float" id="tab7">
<label>Table 7</label>
<caption>
<p>Determination of the adsorption capacity of immobilized <italic>S. cerevisiae</italic> cells.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Strain</th>
<th align="center" valign="top">Adsorption capacity (g)</th>
<th align="center" valign="top">Wet weight of yeast (g)</th>
<th align="center" valign="top">Adsorption rate (mg/g)</th>
<th align="center" valign="top">Percentage increase</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">EBY100</td>
<td align="center" valign="top">0.472</td>
<td align="center" valign="top">64.7</td>
<td align="center" valign="top">7</td>
<td align="center" valign="top">Contrast</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE1</italic></td>
<td align="center" valign="top">0.439</td>
<td align="center" valign="top">40.0</td>
<td align="center" valign="top">10.9</td>
<td align="center" valign="top">55.7%(&#x00B1;2%)</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE3</italic></td>
<td align="center" valign="top">0.39</td>
<td align="center" valign="top">45.5</td>
<td align="center" valign="top">8.57</td>
<td align="center" valign="top">22.4(&#x00B1;0.7%)</td>
</tr>
<tr>
<td align="left" valign="top">EBY100-gE11</td>
<td align="center" valign="top">0.349</td>
<td align="center" valign="top">42</td>
<td align="center" valign="top">8.3</td>
<td align="center" valign="top">18.5(&#x00B1;0.6%)</td>
</tr>
<tr>
<td align="left" valign="top">EBY100<italic>-gE6</italic></td>
<td align="center" valign="top">0.452</td>
<td align="center" valign="top">63.7</td>
<td align="center" valign="top">7.09</td>
<td align="center" valign="top">1.2(&#x00B1;0.04%)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="sec16">
<title>Discussion</title>
<p>In the present study, the Ph.D.-12 Peptide Library was used to identify Cd<sup>2+</sup>-binding peptides. Three consecutive rounds of biopanning were performed using Cd-NTA agarose as a binding target, with cell surface-binding phages recovered by cell lysis in each round. The P/N value was used to reflect the ability of specific clones to bind Cd<sup>2+</sup> each round. In the third round of screening, the P/N value reached 56, indicating that the screened peptides had strong specificity for Cd<sup>2+</sup> ions. By sequencing the selected phages, four usable small peptide sequences were obtained. The analysis showed that histidine was present in both of the sequences. The genes encoding these binding peptides were each expressed on the surface of <italic>S. cerevisiae</italic> EBY100 cells. The results showed that yeast had higher adsorption efficiency for cadmium ion when galactose was induced for 24&#x2009;h. Compared with the control strain, the adsorption efficiency of the recombinant strain was increased by 35% at most. This finding is consistent with numerous studies showing that histidine is a key component of high-affinity metal-binding peptides, containing an imidazole group that coordinates with metal cations, making it a metal-affinity amino acid (<xref ref-type="bibr" rid="ref26">Sharma et al., 2021</xref>; <xref ref-type="bibr" rid="ref3">Csire et al., 2020</xref>).</p>
<p>This result is consistent with the report by <xref ref-type="bibr" rid="ref5">Jingshuang et al. (2006)</xref> that peptides containing five histidine residues had a stronger affinity for Cd<sup>2+</sup> than those containing only one histidine. Notably, no cysteine residue was found in the sequences obtained by screening, which may be related to the instability of cysteine in phage screening. <xref ref-type="bibr" rid="ref29">Sumiyoshi et al. (2022)</xref> developed a peptide-based sequestering agent, AADAAC-(FPGVG)<sub>4</sub>, by introducing the metal-binding sequence AADAAC on the N-terminus of a short ELP, (FPGVG)<sub>4</sub>. In turbidity measurements, AADAAC -(FPGVG)<sub>4</sub> revealed strong self-assembling ability in the presence of metal ions such as Cd<sup>2+</sup> and Zn<sup>2+</sup>. The results from colorimetric analysis indicated that AADAAC-(FPGVG)<sub>4</sub> could capture Cd<sup>2+</sup> and Zn<sup>2+</sup>. Furthermore, AADAAC-(FPGVG)<sub>4</sub> that bound to metal ions could be readily recycled by treatment with acidic solution without compromising its metal binding affinity.</p>
<p>Because heavy metals are recalcitrant and do not disintegrate, their immobilization is an ideal remediation strategy (<xref ref-type="bibr" rid="ref25">Schommer et al., 2023</xref>). Following their immobilization, microbial cells exhibit stronger antitoxic effects and improved capacity for the adsorption of heavy metals (<xref ref-type="bibr" rid="ref32">Zhang et al., 2021</xref>). Therefore, the study used sodium alginate as a carrier to construct immobilized <italic>S. cerevisiae</italic> cells, the results showed that the adsorption performance of immobilized yeast was the best when the concentration of calcium chloride was 2%, the concentration of sodium alginate was 3%, and the temperature was 25&#x00B0;C. The adsorption efficiency of the recombinant strain was greatly improved by up to 55.7% compared with the control strain in the determination of the adsorption performance of immobilized yeast. This result is comparable to that by <xref ref-type="bibr" rid="ref10">Li et al. (2019)</xref>, who achieved 68.62% adsorption capacity of a recombinant strain for Ni(II) using cell immobilization techniques.</p>
<p>In the process of research, it was also found that this display system has certain limitations in the following aspects. First, there was a lack of options for recombinant yeast, and the yeast growth temperature was strict, below 25&#x00B0;C or above 30&#x00B0;C yeast would stop growing or even die. If the conversion conditions were too harsh, such as the required temperature was too high or too low or the buffering conditions were relatively severe, it may cause the death of yeast, reduce its conversion efficiency, and it was difficult to obtain the target clone. Second, although cadmium ion metal-binding peptide could be displayed on the outside of the cell wall correctly, the display time was timeliness. In the future, better carriers or hosts would be applied to make the metal-binding peptide fixed on the surface of the cell wall and play its role at all times.</p>
</sec>
<sec sec-type="conclusions" id="sec17">
<title>Conclusion</title>
<p>The display of Cd<sup>2+</sup> ion-binding peptides on yeast creates high-capacity bioadsorbents that are useful to remove Cd from polluted wastewater. Sorption through the cell surface is more powerful than intracellular sorption: (1) sorption through the cell surface enhances the binding of metal compared to the control strain; (2) sorption through the cell surface can wash off the metal ions from the cell surface without breaking the cells, facilitating the recycling of metal ions and yeast cells, which can enhance the treatment efficacy and reduce production costs; (3) sorption through the cell surface is feasible in even dead cells, since non-viable cells can adsorb heavy-metal ions by metabolism-independent surface binding rather than energy-dependent intracellular uptake.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="sec18">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">Supplementary material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec sec-type="author-contributions" id="sec19">
<title>Author contributions</title>
<p>SoW: Methodology, Software, Writing &#x2013; original draft. YS: Data curation, Visualization, Writing &#x2013; original draft. ShW: Methodology, Visualization, Writing &#x2013; review &#x0026; editing. CF: Formal analysis, Methodology, Writing &#x2013; original draft. DW: Investigation, Methodology, Writing &#x2013; review &#x0026; editing. FL: Formal analysis, Methodology, Project administration, Writing &#x2013; original draft. HZ: Funding acquisition, Resources, Writing &#x2013; review &#x0026; editing.</p>
</sec>
<sec sec-type="funding-information" id="sec20">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This study was supported in part by grants from Undergraduate Innovation and Entrepreneurship Training Program of Henan University, National Undergraduate Innovation and Entrepreneurship Training Program (202310475098), Key Research and Development Projects of Henan Province (221111110200), and Science and Technology Program of Xizang Autonomous Region (QYXTCXZX-SNS-2022-1).</p>
</sec>
<sec sec-type="COI-statement" id="sec21">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="sec22">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="sec23">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2024.1496843/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2024.1496843/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Supplementary_file_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="ref1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Arsenie</surname> <given-names>T.</given-names></name> <name><surname>Cara</surname> <given-names>I. G.</given-names></name> <name><surname>Popescu</surname> <given-names>M.-C.</given-names></name> <name><surname>Motrescu</surname> <given-names>I.</given-names></name> <name><surname>Bulgariu</surname> <given-names>L.</given-names></name></person-group> (<year>2022</year>). <article-title>Evaluation of the adsorptive performances of rapeseed waste in the removal of toxic metal ions in aqueous media</article-title>. <source>Water</source> <volume>14</volume>:<fpage>4108</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w14244108</pub-id></citation></ref>
<ref id="ref2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Choudhury</surname> <given-names>S.</given-names></name> <name><surname>Chatterjee</surname> <given-names>A.</given-names></name></person-group> (<year>2022</year>). <article-title>Microbial application in remediation of heavy metals: an overview</article-title>. <source>Arch. Microbiol.</source> <volume>204</volume>:<fpage>268</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s00203-022-02874-1</pub-id>, PMID: <pub-id pub-id-type="pmid">35438381</pub-id></citation></ref>
<ref id="ref3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Csire</surname> <given-names>G.</given-names></name> <name><surname>Turi</surname> <given-names>I.</given-names></name> <name><surname>S&#x00F3;v&#x00E1;g&#x00F3;</surname> <given-names>I.</given-names></name> <name><surname>K&#x00E1;rp&#x00E1;ti</surname> <given-names>E.</given-names></name> <name><surname>K&#x00E1;llay</surname> <given-names>C.</given-names></name></person-group> (<year>2020</year>). <article-title>Complex formation processes and metal ion catalyzed oxidation of model peptides related to the metal binding site of the human prion protein</article-title>. <source>J. Inorg. Biochem.</source> <volume>203</volume>:<fpage>110927</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.jinorgbio.2019.110927</pub-id>, PMID: <pub-id pub-id-type="pmid">31810042</pub-id></citation></ref>
<ref id="ref4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Day</surname> <given-names>J. W.</given-names></name> <name><surname>Kim</surname> <given-names>C. H.</given-names></name> <name><surname>Smider</surname> <given-names>V. V.</given-names></name> <name><surname>Schultz</surname> <given-names>P. G.</given-names></name></person-group> (<year>2013</year>). <article-title>Identification of metal ion binding peptides containing unnatural amino acids by phage display</article-title>. <source>Bioorg. Med. Chem. Lett.</source> <volume>23</volume>, <fpage>2598</fpage>&#x2013;<lpage>2600</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.bmcl.2013.02.106</pub-id>, PMID: <pub-id pub-id-type="pmid">23541674</pub-id></citation></ref>
<ref id="ref5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jingshuang</surname> <given-names>H.</given-names></name> <name><surname>Chunyan</surname> <given-names>M.</given-names></name> <name><surname>Xin</surname> <given-names>T.</given-names></name> <name><surname>Yi Zhuolin</surname> <given-names>X.</given-names></name> <name><surname>Liu</surname> <given-names>M. C.</given-names></name></person-group> (<year>2006</year>). <article-title>Screening of Cd2+ binding peptides and their affinity with heavy metal ions</article-title>. <source>Microbiol. China</source> <volume>5</volume>, <fpage>70</fpage>&#x2013;<lpage>74</lpage>. doi: <pub-id pub-id-type="doi">10.13344/j.microbiol.china.2006.05.016</pub-id></citation></ref>
<ref id="ref6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Juarez Jimenez</surname> <given-names>B.</given-names></name> <name><surname>Reboleiro Rivas</surname> <given-names>P.</given-names></name> <name><surname>Gonzalez Lopez</surname> <given-names>J.</given-names></name> <name><surname>Pesciaroli</surname> <given-names>C.</given-names></name> <name><surname>Barghini</surname> <given-names>P.</given-names></name> <name><surname>Fenice</surname> <given-names>M.</given-names></name></person-group> (<year>2012</year>). <article-title>Immobilization of <italic>Delftia tsuruhatensis</italic> in macro-porous cellulose and biodegradation of phenolic compounds in repeated batch process</article-title>. <source>J. Biotechnol.</source> <volume>157</volume>, <fpage>148</fpage>&#x2013;<lpage>153</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.jbiotec.2011.09.026</pub-id>, PMID: <pub-id pub-id-type="pmid">21983235</pub-id></citation></ref>
<ref id="ref7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kang</surname> <given-names>C. H.</given-names></name> <name><surname>Han</surname> <given-names>S. H.</given-names></name> <name><surname>Shin</surname> <given-names>Y.</given-names></name> <name><surname>Oh</surname> <given-names>S. J.</given-names></name> <name><surname>So</surname> <given-names>J. S.</given-names></name></person-group> (<year>2014</year>). <article-title>Bioremediation of cd by microbially induced calcite precipitation</article-title>. <source>Appl. Biochem. Biotechnol.</source> <volume>172</volume>, <fpage>1929</fpage>&#x2013;<lpage>1937</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s12010-013-0626-z</pub-id></citation></ref>
<ref id="ref8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lee</surname> <given-names>Y. J.</given-names></name> <name><surname>Lee</surname> <given-names>C. G.</given-names></name> <name><surname>Min</surname> <given-names>K. J.</given-names></name> <name><surname>Park</surname> <given-names>S. J.</given-names></name></person-group> (<year>2024</year>). <article-title>Efficient cadmium removal from industrial wastewater generated from smelter using chemical precipitation and oxidation assistance</article-title>. <source>Water Environ. Res.</source> <volume>96</volume>:<fpage>e11059</fpage>. doi: <pub-id pub-id-type="doi">10.1002/wer.11059</pub-id>, PMID: <pub-id pub-id-type="pmid">38812097</pub-id></citation></ref>
<ref id="ref9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Leong</surname> <given-names>Y. K.</given-names></name> <name><surname>Chang</surname> <given-names>J. S.</given-names></name></person-group> (<year>2020</year>). <article-title>Bioremediation of heavy metals using microalgae: recent advances and mechanisms</article-title>. <source>Bioresour. Technol.</source> <volume>303</volume>:<fpage>122886</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.biortech.2020.122886</pub-id>, PMID: <pub-id pub-id-type="pmid">32046940</pub-id></citation></ref>
<ref id="ref10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>H.</given-names></name> <name><surname>Dong</surname> <given-names>W.</given-names></name> <name><surname>Liu</surname> <given-names>Y.</given-names></name> <name><surname>Zhang</surname> <given-names>H.</given-names></name> <name><surname>Wang</surname> <given-names>G.</given-names></name></person-group> (<year>2019</year>). <article-title>Enhanced biosorption of nickel ions on immobilized surface-engineered yeast using nickel-binding peptides</article-title>. <source>Front. Microbiol.</source> <volume>10</volume>:<fpage>1254</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2019.01254</pub-id>, PMID: <pub-id pub-id-type="pmid">31297097</pub-id></citation></ref>
<ref id="ref11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>X.</given-names></name> <name><surname>Ren</surname> <given-names>Z.</given-names></name> <name><surname>Crabbe</surname> <given-names>M. J. C.</given-names></name> <name><surname>Wang</surname> <given-names>L.</given-names></name> <name><surname>Ma</surname> <given-names>W.</given-names></name></person-group> (<year>2021</year>). <article-title>Genetic modifications of metallothionein enhance the tolerance and bioaccumulation of heavy metals in <italic>Escherichia coli</italic></article-title>. <source>Ecotoxicol. Environ. Saf.</source> <volume>222</volume>:<fpage>112512</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecoenv.2021.112512</pub-id>, PMID: <pub-id pub-id-type="pmid">34271502</pub-id></citation></ref>
<ref id="ref12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>Y.</given-names></name> <name><surname>Yu</surname> <given-names>H.</given-names></name> <name><surname>Liu</surname> <given-names>L.</given-names></name> <name><surname>Yu</surname> <given-names>H.</given-names></name></person-group> (<year>2021</year>). <article-title>Application of co-pyrolysis biochar for the adsorption and immobilization of heavy metals in contaminated environmental substrates</article-title>. <source>J. Hazard. Mater.</source> <volume>420</volume>:<fpage>126655</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.jhazmat.2021.126655</pub-id>, PMID: <pub-id pub-id-type="pmid">34329082</pub-id></citation></ref>
<ref id="ref13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liang</surname> <given-names>Z.</given-names></name> <name><surname>Gao</surname> <given-names>Q.</given-names></name> <name><surname>Wu</surname> <given-names>Z.</given-names></name> <name><surname>Gao</surname> <given-names>H.</given-names></name></person-group> (<year>2022</year>). <article-title>Removal and kinetics of cadmium and copper ion adsorption in aqueous solution by zeolite NaX synthesized from coal gangue</article-title>. <source>Environ. Sci. Pollut. Res. Int.</source> <volume>29</volume>, <fpage>84651</fpage>&#x2013;<lpage>84660</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11356-022-21700-1</pub-id>, PMID: <pub-id pub-id-type="pmid">35788478</pub-id></citation></ref>
<ref id="ref14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>Z.</given-names></name> <name><surname>Ho</surname> <given-names>S. H.</given-names></name> <name><surname>Hasunuma</surname> <given-names>T.</given-names></name> <name><surname>Chang</surname> <given-names>J. S.</given-names></name> <name><surname>Ren</surname> <given-names>N. Q.</given-names></name> <name><surname>Kondo</surname> <given-names>A.</given-names></name></person-group> (<year>2016</year>). <article-title>Recent advances in yeast cell-surface display technologies for waste biorefineries</article-title>. <source>Bioresour. Technol.</source> <volume>215</volume>, <fpage>324</fpage>&#x2013;<lpage>333</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.biortech.2016.03.132</pub-id>, PMID: <pub-id pub-id-type="pmid">27039354</pub-id></citation></ref>
<ref id="ref15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Maqsood</surname> <given-names>Q.</given-names></name> <name><surname>Hussain</surname> <given-names>N.</given-names></name> <name><surname>Mumtaz</surname> <given-names>M.</given-names></name> <name><surname>Bilal</surname> <given-names>M.</given-names></name> <name><surname>Iqbal</surname> <given-names>H. M. N.</given-names></name></person-group> (<year>2022</year>). <article-title>Novel strategies and advancement in reducing heavy metals from the contaminated environment</article-title>. <source>Arch. Microbiol.</source> <volume>204</volume>:<fpage>478</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s00203-022-03087-2</pub-id>, PMID: <pub-id pub-id-type="pmid">35831495</pub-id></citation></ref>
<ref id="ref16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Meena</surname> <given-names>R. A. A.</given-names></name> <name><surname>Sathishkumar</surname> <given-names>P.</given-names></name> <name><surname>Ameen</surname> <given-names>F.</given-names></name> <name><surname>Yusoff</surname> <given-names>A. R. M.</given-names></name> <name><surname>Gu</surname> <given-names>F. L.</given-names></name></person-group> (<year>2018</year>). <article-title>Heavy metal pollution in immobile and mobile components of lentic ecosystems-a review</article-title>. <source>Environ. Sci. Pollut. Res. Int.</source> <volume>25</volume>, <fpage>4134</fpage>&#x2013;<lpage>4148</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11356-017-0966-2</pub-id>, PMID: <pub-id pub-id-type="pmid">29247419</pub-id></citation></ref>
<ref id="ref17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Meng</surname> <given-names>S.</given-names></name> <name><surname>Peng</surname> <given-names>T.</given-names></name> <name><surname>Pratush</surname> <given-names>A.</given-names></name> <name><surname>Huang</surname> <given-names>T.</given-names></name> <name><surname>Hu</surname> <given-names>Z.</given-names></name></person-group> (<year>2021</year>). <article-title>Interactions between heavy metals and bacteria in mangroves</article-title>. <source>Mar. Pollut. Bull.</source> <volume>172</volume>:<fpage>112846</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.marpolbul.2021.112846</pub-id>, PMID: <pub-id pub-id-type="pmid">34399277</pub-id></citation></ref>
<ref id="ref18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mooney</surname> <given-names>J. T.</given-names></name> <name><surname>Fredericks</surname> <given-names>D.</given-names></name> <name><surname>Hearn</surname> <given-names>M. T.</given-names></name></person-group> (<year>2011</year>). <article-title>Use of phage display methods to identify heptapeptide sequences for use as affinity purification 'tags' with novel chelating ligands in immobilized metal ion affinity chromatography</article-title>. <source>J. Chromatogr. A</source> <volume>1218</volume>, <fpage>92</fpage>&#x2013;<lpage>99</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.chroma.2010.10.113</pub-id>, PMID: <pub-id pub-id-type="pmid">21159343</pub-id></citation></ref>
<ref id="ref19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pande</surname> <given-names>J.</given-names></name> <name><surname>Szewczyk</surname> <given-names>M. M.</given-names></name> <name><surname>Grover</surname> <given-names>A. K.</given-names></name></person-group> (<year>2010</year>). <article-title>Phage display: concept, innovations, applications and future</article-title>. <source>Biotechnol. Adv.</source> <volume>28</volume>, <fpage>849</fpage>&#x2013;<lpage>858</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.biotechadv.2010.07.004</pub-id>, PMID: <pub-id pub-id-type="pmid">20659548</pub-id></citation></ref>
<ref id="ref20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Patwardhan</surname> <given-names>A. V.</given-names></name> <name><surname>Goud</surname> <given-names>G. N.</given-names></name> <name><surname>Koepsel</surname> <given-names>R. R.</given-names></name> <name><surname>Ataai</surname> <given-names>M. M.</given-names></name></person-group> (<year>1997</year>). <article-title>Selection of optimum affinity tags from a phage-displayed peptide library. Application to immobilized copper (II) affinity chromatography</article-title>. <source>J. Chromatogr. A</source> <volume>787</volume>, <fpage>91</fpage>&#x2013;<lpage>100</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0021-9673(97)00580-3</pub-id>, PMID: <pub-id pub-id-type="pmid">9408996</pub-id></citation></ref>
<ref id="ref21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rahman</surname> <given-names>Z.</given-names></name> <name><surname>Singh</surname> <given-names>V. P.</given-names></name></person-group> (<year>2019</year>). <article-title>The relative impact of toxic heavy metals (THMs) (arsenic (as), cadmium (cd), chromium (Cr) (VI), mercury (hg), and lead (Pb)) on the total environment: an overview</article-title>. <source>Environ. Monit. Assess.</source> <volume>191</volume>:<fpage>419</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s10661-019-7528-7</pub-id></citation></ref>
<ref id="ref22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rizwan</surname> <given-names>M.</given-names></name> <name><surname>Ali</surname> <given-names>S.</given-names></name> <name><surname>Adrees</surname> <given-names>M.</given-names></name> <name><surname>Rizvi</surname> <given-names>H.</given-names></name> <name><surname>Zia-Ur-Rehman</surname> <given-names>M.</given-names></name> <name><surname>Hannan</surname> <given-names>F.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Cadmium stress in rice: toxic effects, tolerance mechanisms, and management: a critical review</article-title>. <source>Environ. Sci. Pollut. Res. Int.</source> <volume>23</volume>, <fpage>17859</fpage>&#x2013;<lpage>17879</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s11356-016-6436-4</pub-id>, PMID: <pub-id pub-id-type="pmid">26996904</pub-id></citation></ref>
<ref id="ref23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Samuelson</surname> <given-names>P.</given-names></name> <name><surname>Wern&#x00E9;rus</surname> <given-names>H.</given-names></name> <name><surname>Svedberg</surname> <given-names>M.</given-names></name> <name><surname>St&#x00E5;hl</surname> <given-names>S.</given-names></name></person-group> (<year>2000</year>). <article-title>Staphylococcal surface display of metal-binding polyhistidyl peptides</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>66</volume>, <fpage>1243</fpage>&#x2013;<lpage>1248</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.66.3.1243-1248.2000</pub-id>, PMID: <pub-id pub-id-type="pmid">10698802</pub-id></citation></ref>
<ref id="ref24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Savastru</surname> <given-names>E.</given-names></name> <name><surname>Bulgariu</surname> <given-names>D.</given-names></name> <name><surname>Zamfir</surname> <given-names>C.-I.</given-names></name> <name><surname>Bulgariu</surname> <given-names>L.</given-names></name></person-group> (<year>2022</year>). <article-title>Application of <italic>Saccharomyces cerevisiae</italic> in the biosorption of co(II), Zn(II) and cu(II) ions from aqueous media</article-title>. <source>Water</source> <volume>14</volume>:<fpage>976</fpage>. doi: <pub-id pub-id-type="doi">10.3390/w14060976</pub-id></citation></ref>
<ref id="ref25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schommer</surname> <given-names>V. A.</given-names></name> <name><surname>Vanin</surname> <given-names>A. P.</given-names></name> <name><surname>Nazari</surname> <given-names>M. T.</given-names></name> <name><surname>Ferrari</surname> <given-names>V.</given-names></name> <name><surname>Dettmer</surname> <given-names>A.</given-names></name> <name><surname>Colla</surname> <given-names>L. M.</given-names></name> <etal/></person-group>. (<year>2023</year>). <article-title>Biochar-immobilized Bacillus spp. for heavy metals bioremediation: a review on immobilization techniques, bioremediation mechanisms and effects on soil</article-title>. <source>Sci. Total Environ.</source> <volume>881</volume>:<fpage>163385</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2023.163385</pub-id>, PMID: <pub-id pub-id-type="pmid">37054796</pub-id></citation></ref>
<ref id="ref26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sharma</surname> <given-names>P.</given-names></name> <name><surname>Pandey</surname> <given-names>A. K.</given-names></name> <name><surname>Udayan</surname> <given-names>A.</given-names></name> <name><surname>Kumar</surname> <given-names>S.</given-names></name></person-group> (<year>2021</year>). <article-title>Role of microbial community and metal-binding proteins in phytoremediation of heavy metals from industrial wastewater</article-title>. <source>Bioresour. Technol.</source> <volume>326</volume>:<fpage>124750</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.biortech.2021.124750</pub-id>, PMID: <pub-id pub-id-type="pmid">33517048</pub-id></citation></ref>
<ref id="ref27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Soudani</surname> <given-names>A.</given-names></name> <name><surname>Youcef</surname> <given-names>L.</given-names></name> <name><surname>Bulgariu</surname> <given-names>L.</given-names></name> <name><surname>Youcef</surname> <given-names>S.</given-names></name> <name><surname>Toumi</surname> <given-names>K.</given-names></name> <name><surname>Soudani</surname> <given-names>N.</given-names></name></person-group> (<year>2022</year>). <article-title>Characterizing and modeling of oak fruit shells biochar as an adsorbent for the removal of cu, cd, and Zn in single and in competitive systems</article-title>. <source>Chem. Eng. Res. Des.</source> <volume>188</volume>, <fpage>972</fpage>&#x2013;<lpage>987</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.cherd.2022.10.009</pub-id></citation></ref>
<ref id="ref28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Su</surname> <given-names>Z.</given-names></name> <name><surname>Li</surname> <given-names>X.</given-names></name> <name><surname>Xi</surname> <given-names>Y.</given-names></name> <name><surname>Xie</surname> <given-names>T.</given-names></name> <name><surname>Liu</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>B.</given-names></name> <etal/></person-group>. (<year>2022</year>). <article-title>Microbe-mediated transformation of metal sulfides: mechanisms and environmental significance</article-title>. <source>Sci. Total Environ.</source> <volume>825</volume>:<fpage>153767</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2022.153767</pub-id>, PMID: <pub-id pub-id-type="pmid">35157862</pub-id></citation></ref>
<ref id="ref29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sumiyoshi</surname> <given-names>S.</given-names></name> <name><surname>Suyama</surname> <given-names>K.</given-names></name> <name><surname>Tatsubo</surname> <given-names>D.</given-names></name> <name><surname>Tanaka</surname> <given-names>N.</given-names></name> <name><surname>Tomohara</surname> <given-names>K.</given-names></name> <name><surname>Taniguchi</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2022</year>). <article-title>Metal ion scavenging activity of elastin-like peptide analogues containing a cadmium ion binding sequence</article-title>. <source>Sci. Rep.</source> <volume>12</volume>:<fpage>1861</fpage>. doi: <pub-id pub-id-type="doi">10.1038/s41598-022-05695-w</pub-id>, PMID: <pub-id pub-id-type="pmid">35115613</pub-id></citation></ref>
<ref id="ref30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Valls</surname> <given-names>M.</given-names></name> <name><surname>Atrian</surname> <given-names>S.</given-names></name> <name><surname>de Lorenzo</surname> <given-names>V.</given-names></name> <name><surname>Fern&#x00E1;ndez</surname> <given-names>L. A.</given-names></name></person-group> (<year>2000</year>). <article-title>Engineering a mouse metallothionein on the cell surface of <italic>Ralstonia eutropha</italic> CH34 for immobilization of heavy metals in soil</article-title>. <source>Nat. Biotechnol.</source> <volume>18</volume>, <fpage>661</fpage>&#x2013;<lpage>665</lpage>. doi: <pub-id pub-id-type="doi">10.1038/76516</pub-id>, PMID: <pub-id pub-id-type="pmid">10835606</pub-id></citation></ref>
<ref id="ref31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zarei</surname> <given-names>O.</given-names></name> <name><surname>Benvenuti</surname> <given-names>S.</given-names></name> <name><surname>Ustun-Alkan</surname> <given-names>F.</given-names></name> <name><surname>Hamzeh-Mivehroud</surname> <given-names>M.</given-names></name> <name><surname>Dastmalchi</surname> <given-names>S.</given-names></name></person-group> (<year>2017</year>). <article-title>Identification of a RON tyrosine kinase receptor binding peptide using phage display technique and computational modeling of its binding mode</article-title>. <source>J. Mol. Model.</source> <volume>23</volume>:<fpage>267</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s00894-017-3437-2</pub-id></citation></ref>
<ref id="ref32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>K.</given-names></name> <name><surname>Zhang</surname> <given-names>D.</given-names></name> <name><surname>Wu</surname> <given-names>X.</given-names></name> <name><surname>Xue</surname> <given-names>Y.</given-names></name></person-group> (<year>2021</year>). <article-title>Continuous and efficient immobilization of heavy metals by phosphate-mineralized bacterial consortium</article-title>. <source>J. Hazard. Mater.</source> <volume>416</volume>:<fpage>125800</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.jhazmat.2021.125800</pub-id>, PMID: <pub-id pub-id-type="pmid">33836328</pub-id></citation></ref>
</ref-list>
</back>
</article>