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<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2024.1367452</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Editorial</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Editorial: Insights in microbial symbioses: 2022/2023</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Czajkowski</surname> <given-names>Robert</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/354326/overview"/>
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<contrib contrib-type="author">
<name><surname>Zhu</surname> <given-names>Lifeng</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<contrib contrib-type="author">
<name><surname>Kuo</surname> <given-names>Chih-Horng</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
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<contrib contrib-type="author">
<name><surname>Li</surname> <given-names>Zhiyong</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
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<aff id="aff1"><sup>1</sup><institution>Laboratory of Biologically Active Compounds, Intercollegiate Faculty of Biotechnology UG and MUG, University of Gdansk</institution>, <addr-line>Gdansk</addr-line>, <country>Poland</country></aff>
<aff id="aff2"><sup>2</sup><institution>School of Medicine &#x00026; Holistic Integrative Medicine, Nanjing University of Chinese Medicine</institution>, <addr-line>Nanjing</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Evolutionary and Functional Genomics of Symbiotic Bacteria, Institute of Plant and Microbial Biology, Academia Sinica</institution>, <addr-line>Taipei</addr-line>, <country>Taiwan</country></aff>
<aff id="aff4"><sup>4</sup><institution>State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University</institution>, <addr-line>Shanghai</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited and reviewed by: Takema Fukatsu, National Institute of Advanced Industrial Science and Technology (AIST), Japan</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Robert Czajkowski <email>robert.czajkowski&#x00040;ug.edu.pl</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>23</day>
<month>01</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1367452</elocation-id>
<history>
<date date-type="received">
<day>08</day>
<month>01</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>15</day>
<month>01</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2024 Czajkowski, Zhu, Kuo and Li.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Czajkowski, Zhu, Kuo and Li</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<related-article id="RA1" related-article-type="commentary-article" xlink:href="https://www.frontiersin.org/research-topics/47325/insights-in-microbial-symbioses-20222023" ext-link-type="uri">Editorial on the Research Topic <article-title>Insights in microbial symbioses: 2022/2023</article-title></related-article>
<kwd-group>
<kwd>symbiosis</kwd>
<kwd>interaction</kwd>
<kwd>ecology</kwd>
<kwd>microbes</kwd>
<kwd>environment</kwd>
<kwd>holobiont</kwd>
</kwd-group>
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<ref-count count="5"/>
<page-count count="2"/>
<word-count count="1347"/>
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<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Microbial Symbioses</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<p>In recent years, significant improvements have been made in understanding microbial symbiosis, unraveling the complex connections between microorganisms and their hosts (Hays et al., <xref ref-type="bibr" rid="B4">2015</xref>). Researchers explored symbiotic relationships in agroecosystems and insect-microbe interactions, revealing the diversity of microbial symbionts with potential applications in biofuel production and waste management (Aschenbrenner et al., <xref ref-type="bibr" rid="B1">2016</xref>). Studies extended to extreme environments have uncovered novel symbiotic relationships in deep-sea hydrothermal vents and hypersaline basins, increasing our understanding of microbial adaptability and potential extraterrestrial life (Grzymski et al., <xref ref-type="bibr" rid="B3">2008</xref>). Likewise, exploring gut microbiomes in various animals elucidates the delicate balance between hosts and resident microbes. These findings affect ecological conservation, sustainable agriculture, and personalized medicine (Sariola and Gilbert, <xref ref-type="bibr" rid="B5">2020</xref>). As research continues, the intricate relationships between microorganisms promise to reveal more surprises and applications in the years ahead (Duperron, <xref ref-type="bibr" rid="B2">2016</xref>).</p>
<p>This editorial explores the diverse range of topics covered in the seven articles under the Frontiers Research Topic: <italic>Insights in microbial symbioses: 2022/2023</italic>, each contributing to the ever-expanding areas of microbe-environment interactions.</p>
<p><ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1141862">Timmusk et al.</ext-link> article addresses the challenges imposed on land use and agriculture by global climate change. It underscores the pivotal role of microbial communities, particularly rhizobacteria, in shaping plant fitness, and agroecosystem biodiversity. The article supports a paradigm shift in our perspective, emphasizing that microbiomes define plant phenotypes, providing genetic variability crucial for the resilience of agroecosystems in the face of environmental changes.</p>
<p>The article by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1173696">Schwarz et al.</ext-link> delves into the intricate symbiotic relationships between insects and their microbial companions, and it focuses on wood digestion in the passalid beetle <italic>Odontotaenius disjunctus</italic>. This study sheds light on the significance of microhabitats and reveals a diverse fiber-associated microbiome. The findings highlight insects&#x00027; diverse evolutionary paths to adapt to wood-feeding, offering a deeper understanding of these complex ecological interactions.</p>
<p>The third article by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1192574">Li et al.</ext-link> introduces an innovative approach to unraveling interspecies interactions at the genome-wide level. By integrating Lotka-Volterra equations into a systems mapping model, the study explores how the genes of coexisting species shape community structures and functions. Through a co-culture experiment involving <italic>Escherichia coli</italic> and <italic>Staphylococcus aureus</italic>, the researchers identify significant quantitative trait loci (QTL) combinations, providing a comprehensive view of the genetic mechanisms driving community dynamics and evolution.</p>
<p>The fourth article, authored by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1201140">Zhang et al.</ext-link>, focuses on the distribution patterns and traits of native rhizobia associated with <italic>Pisum sativum</italic> in Hebei Province, China. In a region experiencing an expansion of pea production, the study identifies distinct rhizobial communities and their efficiency in forming symbiotic partnerships with peas. This research offers valuable insights for optimizing crop breeding programs and enhancing the sustainability of legume cropping systems.</p>
<p>The fifth article, written by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1220670">Yu et al.</ext-link>, addresses the decline in yield and quality of <italic>Gastrodia elata</italic> Bl due to asexual reproduction. By isolating and identifying suitable germination fungi, particularly <italic>Mycena purpureofusca</italic>, the study provides a mechanism to enhance the yield of <italic>G. elata</italic> Bl. f. <italic>glauca</italic>. The research improves production performance and increases our understanding of the complex relationship between microbial communities and plant health.</p>
<p>The sixth article by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1264786">Zhao et al.</ext-link> presents a comprehensive analysis of gut pathogens in different populations of giant pandas, both captive and wild. The study identifies unique pathogenic bacteria and virulence factors, unraveling their role in intestinal diseases that threaten the health and survival of these iconic animals. The findings contribute to our understanding of panda health and the development of effective conservation measures.</p>
<p>The last article gathered in this Research Topic was authored by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1276438">Medina-Ch&#x000E1;vez et al.</ext-link>. This article explores microbial syntrophy in the extreme Cuatro Cienegas Basin. The study unveils a co-culture of a halophilic archaeon and a marine halophilic bacterium, emphasizing their shared characteristics and enhancing symbiotic association. Through genomic analysis, the research aims to uncover insights into the evolution of halophilic microorganisms and their remarkable adaptations to high-salinity environments.</p>
<p>In conclusion, these seven articles collectively offer a glimpse into the current state of the growing field of microbial symbiosis. Although the presented articles stand for a distinct field and cover various topics, each contribution adds a layer to our understanding of environmental microbial interactions. The decade ahead promises further revelations and breakthroughs in microbial symbiosis.</p>
<sec sec-type="author-contributions" id="s1">
<title>Author contributions</title>
<p>RC: Conceptualization, Writing &#x02013; original draft, Writing &#x02013; review &#x00026; editing. LZ: Writing &#x02013; original draft, Writing &#x02013; review &#x00026; editing. C-HK: Writing &#x02013; original draft, Writing &#x02013; review &#x00026; editing. ZL: Writing &#x02013; original draft, Writing &#x02013; review &#x00026; editing.</p></sec>
</body>
<back>
<sec sec-type="funding-information" id="s2">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. RC acknowledges the grant support of NCN SONATA BIS 10 (2020/38/E/NZ9/00007) from the National Science Center, Poland (Narodowe Centrum Nauki, Polska). C-HK acknowledges the funding support from Academia Sinica, Taiwan.</p>
</sec>
<ack><p>We thank all authors and reviewers for their contribution.</p>
</ack>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.</p>
</sec>
<sec sec-type="disclaimer" id="s3">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="disclaimer" id="s4">
<title>Author disclaimer</title>
<p>The content is solely the responsibility of the authors and does not necessarily represent the official views of the funding agencies.</p>
</sec>
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</article>