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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2024.1367297</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Screening and identification of an aflatoxin B<sub>1</sub>-degrading strain from the Qinghai-Tibet Plateau and biodegradation products analysis</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Tang</surname> <given-names>Ying</given-names></name>
<uri xlink:href="https://loop.frontiersin.org/people/2624075/overview"/>
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<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Liu</surname> <given-names>Xiaojing</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/667115/overview"/>
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</contrib>
<contrib contrib-type="author">
<name><surname>Dong</surname> <given-names>Ling</given-names></name>
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</contrib>
<contrib contrib-type="author">
<name><surname>He</surname> <given-names>Shengran</given-names></name>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
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</contrib-group>
<aff><institution>College of Pratacultural Science, Gan Su Agricultural University</institution>, <addr-line>Lanzhou</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0006"><p>Edited by: Lucilla Iacumin, University of Udine, Italy</p></fn>
<fn fn-type="edited-by" id="fn0007"><p>Reviewed by: Vishal Kumar, Yeungnam University, Republic of Korea</p><p>Fuguo Xing, Chinese Academy of Agricultural Sciences, China</p><p>Xingjun Feng, Northeast Agricultural University, China</p></fn>
<corresp id="c001">&#x002A;Correspondence: Xiaojing Liu, <email>liuxj@gsau.edu.cn</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>01</day>
<month>05</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1367297</elocation-id>
<history>
<date date-type="received">
<day>08</day>
<month>01</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>03</day>
<month>04</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Tang, Liu, Dong and He.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Tang, Liu, Dong and He</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>This research aimed to address the issue of aflatoxin B<sub>1</sub> (AFB<sub>1</sub>) contamination, which posed severe health and economic consequences. This study involved exploring unique species resources in the Qinghai-Tibet Plateau, screening strains capable of degrading AFB<sub>1</sub>. UPLC-Q-Orbitrap HRMS and NMR were employed to examine the degradation process and identify the structure of the degradation products. Results showed that <italic>Bacillus amyloliquefaciens</italic> YUAD7, isolated from yak dung in the Qinghai-Tibet Plateau, removed 91.7% of AFB<sub>1</sub> from TSB-AFB<sub>1</sub> medium with an AFB<sub>1</sub> concentration of 10&#x2009;&#x03BC;g/mL (72&#x2009;h, 37&#x00B0;C, pH 6.8) and over 85% of AFB<sub>1</sub> from real food samples at 10&#x2009;&#x03BC;g/g (72&#x2009;h, 37&#x00B0;C), exhibiting strong AFB<sub>1</sub> degradation activity. <italic>Bacillus amyloliquefaciens</italic> YUAD7&#x2019;s extracellular secretions played a major role in AFB<sub>1</sub> degradation mediated and could still degrade AFB<sub>1</sub> by 43.16% after boiling for 20&#x2009;min. Moreover, <italic>B. amyloliquefaciens</italic> YUAD7 demonstrated the capability to decompose AFB<sub>1</sub> through processes such as hydrogenation, enzyme modification, and the elimination of the -CO group, resulting in the formation of smaller non-toxic molecules. Identified products include C<sub>12</sub>H<sub>14</sub>O<sub>4</sub>, C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>, C<sub>10</sub>H<sub>14</sub>O<sub>2</sub>, C<sub>4</sub>H<sub>12</sub>N<sub>2</sub>O, with a structure consisting of dimethoxyphenyl and enoic acid, dimethyl-amino and ethyl carbamate, polyunsaturated fatty acid, and aminomethyl. The results indicated that <italic>B. amyloliquefaciens</italic> YUAD7 could be a potentially valuable strain for industrial-scale biodegradation of AFB<sub>1</sub> and providing technical support and new perspectives for research on biodegradation products.</p>
</abstract>
<kwd-group>
<kwd>aflatoxin B1</kwd>
<kwd><italic>Bacillus amyloliquefaciens</italic> YUAD7</kwd>
<kwd>biological detoxification</kwd>
<kwd>detoxification mechanism</kwd>
<kwd>degradation products</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="2"/>
<equation-count count="1"/>
<ref-count count="39"/>
<page-count count="14"/>
<word-count count="8424"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Food Microbiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<label>1</label>
<title>Introduction</title>
<p>Aflatoxin (AFT) is a highly carcinogenic and teratogenic mycotoxin, primarily produced as a secondary metabolite by <italic>Aspergillus flavus</italic> and <italic>Aspergillus parasiticus fungi</italic> (<xref ref-type="bibr" rid="ref19">Maxwell et al., 2021</xref>). AFT contamination affected 60&#x2013;80% of food and feed worldwide, particularly products derived from various types of silage, resulting in annual economic losses reaching trillions (<xref ref-type="bibr" rid="ref26">Song et al., 2022</xref>). Among the 20 types of aflatoxins identified, aflatoxin B<sub>1</sub> (AFB<sub>1</sub>) is the most toxic and has been classified as a Group I human carcinogen by the International Agency for Research on Cancer (IARC; <xref ref-type="bibr" rid="ref27">Suman, 2021</xref>; <xref ref-type="bibr" rid="ref37">Zhang et al., 2024</xref>). Furthermore, although there have been some physical and chemical techniques for AFB<sub>1</sub> removal, defects, including inefficient detoxification, nutrient preservation, costliness, and toxic by-products, existed before widespread implementation (<xref ref-type="bibr" rid="ref34">Yan et al., 2022</xref>; <xref ref-type="bibr" rid="ref17">Loi et al., 2023</xref>). Consequently, searching for safe and effective large-scale AFB<sub>1</sub> detoxification strategies has become a focal point of current scientific research.</p>
<p>Microbial degradation is an attractive technology for AFB<sub>1</sub> cleanup due to its high specificity efficiency and ecological sustainability without compromising food safety. Several beneficial microorganisms had identified for reducing AFB<sub>1</sub> levels in contaminated media according to the researchers, including <italic>Pseudomonas</italic> spp. (<xref ref-type="bibr" rid="ref1">Adebo et al., 2016</xref>; <xref ref-type="bibr" rid="ref5">Biessy and Filion, 2021</xref>), <italic>Rhodococcus</italic> spp. (<xref ref-type="bibr" rid="ref23">Risa et al., 2018</xref>; <xref ref-type="bibr" rid="ref3">Alvarez et al., 2019</xref>), <italic>Bacillus</italic> spp. (<xref ref-type="bibr" rid="ref31">Xia et al., 2017</xref>; <xref ref-type="bibr" rid="ref33">Xu et al., 2017</xref>; <xref ref-type="bibr" rid="ref25">Shu et al., 2018</xref>; <xref ref-type="bibr" rid="ref30">Wang Y. et al., 2018</xref>), <italic>Escherichia coli</italic> (<xref ref-type="bibr" rid="ref29">Wang L. et al., 2018</xref>), <italic>Pleurotus</italic> spp. (<xref ref-type="bibr" rid="ref24">Sharma et al., 2021</xref>), and <italic>Aspergillus niger</italic> (<xref ref-type="bibr" rid="ref36">Yu et al., 2021</xref>). While numerous strain capable of degrading AFB<sub>1</sub> have been screened, particularly <italic>Bacillus</italic> strain stood out as attractive candidates due to their high degradation efficiency (<xref ref-type="bibr" rid="ref35">Yang et al., 2023</xref>). For example, <xref ref-type="bibr" rid="ref30">Wang Y. et al. (2018)</xref> observed that <italic>B. licheniformis</italic> BL010 reduced AFB<sub>1</sub> levels by 89.1% (120&#x2009;h, 30&#x00B0;C, AFB<sub>1</sub> concentration of 0.5&#x2009;&#x03BC;g/mL). <xref ref-type="bibr" rid="ref25">Shu et al. (2018)</xref> found that <italic>B. velezensis</italic> DY3108 reduced AFB<sub>1</sub> levels by 82.0% (within 72&#x2009;h, 30&#x00B0;C, AFB<sub>1</sub> concentration of 5&#x2009;&#x03BC;g/mL). Despite the outstanding degradation performance exhibited by the screened <italic>Bacillus</italic> strains at low AFB<sub>1</sub> concentrations (not exceeding 5&#x2009;&#x03BC;g/mL), this is insufficient to meet the requirements for industrially treating high-concentration AFB<sub>1</sub> contamination. Industrial AFB<sub>1</sub> pollution concentrations can reach as high as 10&#x2009;&#x03BC;g/g, and there are still no strains capable of effectively removing AFB<sub>1</sub> at such elevated concentrations. Previous research indicates that strains screened from extreme environments, particularly the Qinghai-Tibet Plateau, possess stronger temperature resistance, stress tolerance, and unique functionalities than strains selected under other conditions (<xref ref-type="bibr" rid="ref4">Bai et al., 2021</xref>). The research enriched and domesticated strains from extreme environments aim to address large-scale and high-concentration AFB<sub>1</sub> pollution in industrial settings, which provides a new resource for the industrial-scale removal of high-concentration AFB<sub>1</sub>.</p>
<p>Although biodegradable products are often considered safe, it is essential to assess their safety, as the degraded products may still be hazardous. In recent years, some technological approaches have been used to study the biodegradation products of AFB<sub>1</sub>. It was determined the composition and chemical formula of AFB<sub>1</sub> degradation products by HPLC-Q-TOF-MS in tea-derived <italic>Aspergillus niger</italic> RAF106 (<xref ref-type="bibr" rid="ref9">Fang et al., 2020</xref>), and investigated the degradation products of AFB<sub>1</sub> by two Bacillus Strains using LC-Triple-TOF-MS (<xref ref-type="bibr" rid="ref28">Wang et al., 2022</xref>). As mentioned above, mass spectrometry was used to detect the degradation products of AFB<sub>1</sub>, which could only determine the chemical composition and formula of the products. The structural information of the products could only be inferred based on software calculations by mass spectrometry. Additionally, the interdisciplinary research applied NMR to determine the composition and structures of compounds in complex samples (<xref ref-type="bibr" rid="ref39">Zhu et al., 2019</xref>; <xref ref-type="bibr" rid="ref22">Reif et al., 2021</xref>). This study utilizes NMR, which has high sensitivity and resolution, and can generate two-dimensional and multidimensional spectra, making it a powerful technique for determining complex compound structures. It is essential to ensure the safety and effectiveness of biodegradation pathways by identifying the composition and structures of biodegradation products of AFB<sub>1</sub>. Defining the degradation pathway will contribute to selectively screening for microbial strains that effectively degrade AFB<sub>1</sub> while minimizing potential hazards.</p>
<p>The research focused on screening strains capable of efficiently degrading AFB<sub>1</sub> from the Qinghai-Tibet Plateau&#x2019;s extreme environment, which was easily found in ensiled forage and animal manure. We used UPLC-Q-Orbitrap HRMS to determine the chemical composition of the products and applied NMR to elucidate the structure of degradation products, thereby predicting the degradation pathway. This experimental screening of AFB<sub>1</sub>-degrading strains from the Qinghai-Tibet Plateau enriches the biological resources available for AFB<sub>1</sub> degradation and introduced novel insights into the study of the composition, structure, and degradation pathways of these products.</p>
</sec>
<sec sec-type="materials|methods" id="sec2">
<label>2</label>
<title>Materials and methods</title>
<sec id="sec3">
<label>2.1</label>
<title>Isolation and purification of the target strain</title>
<p>From July to October 2022, samples (Silage corn, Silage alfalfa, and animal feces) were collected from the Qinghai-Tibet Plateau region, including Diebu County, Xiahe County, Gaotai County and Sunan County, Tianzhu Tibetan Autonomous County in Gansu Province. Xining City, Haixi Mongolian and Tibetan Autonomous Prefecture in Qinghai Province. Each 25&#x2009;g sample was thoroughly mixed with 225&#x2009;mL of sterile physiological saline solution. Subsequently, a gradient dilution was performed to achieve dilution levels of 10<sup>&#x2212;3</sup>~10<sup>&#x2212;7</sup>. All dilutions were evenly spread onto a culture medium with coumarin as the sole carbon source (CM medium; L-1distilled water): 10&#x2009;g coumarin, 0.25&#x2009;g KH<sub>2</sub>PO<sub>4</sub>, 1&#x2009;g NH<sub>4</sub>NO<sub>3</sub>, 1&#x2009;g CaCl<sub>2</sub>, 0.25&#x2009;g MgSO<sub>4</sub>&#x00B7;7H<sub>2</sub>O, 1&#x2009;mg FeSO<sub>4</sub>, and 15&#x2009;g agar (<xref ref-type="bibr" rid="ref21">Rao et al., 2017</xref>). The cultures were then incubated at 37&#x00B0;C for 72&#x2009;h. Colonies displaying growth on the CM plates were chosen for the degradation and rescreening experiments of AFB<sub>1</sub>.</p>
</sec>
<sec id="sec4">
<label>2.2</label>
<title>Determination of AFB<sub>1</sub> degradation in liquid culture medium</title>
<p>The preparation method for TSB-AFB<sub>1</sub> liquid medium was as follows: Take 1&#x2009;mL of AFB<sub>1</sub> standard solutions (Sigma-Aldrich, St. Louis, MO, United States) with concentrations of 200, 400, 600, 800, 1,000&#x2009;&#x03BC;g/mL, and add them to 100&#x2009;mL of TSB liquid medium, respectively. The final AFB<sub>1</sub> concentrations in TSB-AFB<sub>1</sub> liquid medium were 2, 4, 6, 8, 10&#x2009;&#x03BC;g/mL, with the pH adjusted to 6.8. Following a modified method based on <xref ref-type="bibr" rid="ref8">Chen et al. (2022)</xref>, a 10&#x2009;mL bacterial suspension with a concentration of 10<sup>8</sup>&#x2009;CFU/mL was inoculated into 100&#x2009;mL TSB-AFB<sub>1</sub> liquid medium (with AFB<sub>1</sub> concentrations of 2, 4, 6, 8, 10&#x2009;&#x03BC;g/mL), and the cultures were shaken culture (37&#x00B0;C, 180&#x2009;rpm, 72&#x2009;h). A sterile TSB-AFB<sub>1</sub> was used as a control. The second screening of initial strains was based on their ability to degrade AFB<sub>1</sub> in TSB-AFB<sub>1</sub> medium with a concentration of 10&#x2009;&#x03BC;g/mL AFB<sub>1</sub>. Evaluated the degradation ability of the finally selected strains toward varying concentrations of AFB<sub>1</sub> using TSB-AFB<sub>1</sub> medium with different concentrations (2, 4, 6, 8, 10&#x2009;&#x03BC;g/mL).</p>
<p>To 5&#x2009;mL of the test solution, 20.0&#x2009;mL of acetonitrile-water solution (V:V/84:16) was added. After shaking for 20&#x2009;min and centrifugation (8,000&#x2009;rpm, 8&#x2009;min), 4&#x2009;mL of the supernatant was taken and subjected to three consecutive extractions with an equal volume of chloroform. The extract was evaporated under nitrogen at 55&#x00B0;C. The precipitate was dissolved in 1&#x2009;mL of DMSO, filtered through a 0.22&#x2009;&#x03BC;m organic membrane, and the filtrate was analyzed for AFB<sub>1</sub> content using High-Performance Liquid Chromatography (HPLC) system (Waters Acquity, Milford, MA, United States).</p>
<p>HPLC conditions for AFB<sub>1</sub> detection: Equipped with a BEH C18 chromatographic column (100&#x2009;mm&#x2009;&#x00D7;&#x2009;2.1&#x2009;mm, 1.7&#x2009;&#x03BC;m) and a 360&#x2009;nm ultraviolet detector. Column temperature: 40&#x00B0;C; mobile phase: acetic acid ammonium/methanol; injection volume: 10&#x2009;&#x03BC;L; flow rate: 0.2&#x2009;mL/min.</p>
<p>In both cases, the percentage of AFB<sub>1</sub> degradation was calculated by following formula, where C was the AFB<sub>1</sub> Paek area in treatment, and F was the AFB<sub>1</sub> peak area in control:</p>
<disp-formula id="EQ1"><label>(1)</label><mml:math id="M1"><mml:msub><mml:mrow><mml:mi mathvariant="normal">A</mml:mi><mml:mi mathvariant="normal">F</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:mrow><mml:mn>1</mml:mn></mml:msub><mml:mspace width="0.25em"/><mml:mi mathvariant="normal">degradation</mml:mi><mml:mspace width="0.25em"/><mml:mfenced open="(" close=")"><mml:mo>%</mml:mo></mml:mfenced><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mn>1</mml:mn><mml:mo>&#x2212;</mml:mo><mml:mfrac><mml:mi mathvariant="normal">C</mml:mi><mml:mi mathvariant="normal">F</mml:mi></mml:mfrac></mml:mrow></mml:mfenced><mml:mo>&#x00D7;</mml:mo><mml:mn>100</mml:mn><mml:mo>%</mml:mo></mml:math></disp-formula>
</sec>
<sec id="sec5">
<label>2.3</label>
<title>Removing AFB<sub>1</sub> from real food samples</title>
<p>The maximum value of AFB<sub>1</sub> contamination in food was 10&#x2009;&#x03BC;g/g, we artificially contaminated real food samples to reach this concentration. Experimental samples applied easily contaminated foods like maize, cheese, and peanuts. To prepare these artificially contaminated samples, 10&#x2009;mL of AFB<sub>1</sub> standard solution (1,000&#x2009;&#x03BC;g/mL) was added separately to 1&#x2009;kg of maize, cheese, and peanuts. Thorough mixing ensured a final AFB<sub>1</sub> concentration of 10&#x2009;&#x03BC;g/g. Following this, each 1&#x2009;kg artificially contaminated food sample received a uniform spray of 100&#x2009;mL bacterial suspension (10<sup>8</sup> CFU/mL), followed by shading incubation (37&#x00B0;C, 72&#x2009;h). Treatment groups comprised M-YUAD7, C-YUAD7, and P-YUAD7. Positive controls included food samples artificially contaminated with AFB<sub>1</sub> but without the inoculated strain (C-M, C-C, C-P). Negative controls consisted of naturally incubated food samples (N-M, N-C, N-P), and strains were inoculated into food samples without artificial AFB<sub>1</sub> contamination (UnM-YUAD7, UnC-YUAD7, UnP-YUAD7). All control groups were also incubated without light (37&#x00B0;C, 72&#x2009;h). The pretreatment steps for detecting AFB<sub>1</sub> content in actual food samples were as follows: 20&#x2009;g of the sample was mixed with 180&#x2009;mL distilled water in a juice extractor, blended at high speed for 30&#x2009;s, and subsequently filtered through four layers of gauze. The obtained pulverized extract will be retained for subsequent AFB<sub>1</sub> content detection, following the same procedures as in step 2.2.</p>
</sec>
<sec id="sec6">
<label>2.4</label>
<title>Morphological, physiological and biochemical characterization of target strains</title>
<p>For physiological and biochemical identification of the target strain, a conventional microbial biochemical identification kit (Beijing Luqiao, Beijing, China) was employed, following the guidelines of &#x201C;Bergey&#x2019;s Manual of Systematic Bacteriology&#x201D; (<xref ref-type="bibr" rid="ref10">Garrity, 1994</xref>).</p>
</sec>
<sec id="sec7">
<label>2.5</label>
<title>Genome sequencing and annotations</title>
<p>The genomic DNA of YUAD7 was extracted via a SanPrep DNA purification kit (Sangon Biotech, Shanghai, China), following the manufacturer&#x2019;s guidelines. Subsequently, a combination of PacBio RS II Single Molecule Real Time (SMRT, Pacific Biosciences, MenloPark, CA, United States) and Illumina sequencing platforms (Illumina Novaseq 6000, Shanghai, China) were employed for sequencing. The accession number PRJNA964696 at the US National Center for Biotechnology Information (NCBI) was assigned to the sequence data of <italic>B. amyloliquefaciens</italic> YUAD7.</p>
<p>The CDSs were predicted with gene annotation performed using GO and KEGG (<xref ref-type="bibr" rid="ref9">Fang et al., 2020</xref>) using sequence alignment tools such as BLAST,<xref ref-type="fn" rid="fn0001"><sup>1</sup></xref> Diamond (Version 0.8.35) and HMMER.<xref ref-type="fn" rid="fn0002"><sup>2</sup></xref> All data were quantified and visualized on the CGView data platform<xref ref-type="fn" rid="fn0003"><sup>3</sup></xref> and the Chiplot online platform.<xref ref-type="fn" rid="fn0004"><sup>4</sup></xref></p>
</sec>
<sec id="sec8">
<label>2.6</label>
<title>Isolating components from the target strains</title>
<p>The AFB<sub>1</sub> degradation capabilities of cell-free supernatant, intracellular extracts, and dead-cell bacterial suspensions were evaluated using a previously described method (<xref ref-type="bibr" rid="ref21">Rao et al., 2017</xref>; <xref ref-type="bibr" rid="ref6">Cai et al., 2020</xref>). The cell-free supernatant, intracellular extracts, and bacterial suspension of dead cells were incubated with TSB-AFB<sub>1</sub> medium (AFB<sub>1</sub> concentration of 10&#x2009;&#x03BC;g/mL) at 37&#x00B0;C with 180&#x2009;rpm shaking for 72&#x2009;h. Control cultures consisted of TSB medium or sterile phosphate buffer supplemented (PBS) with AFB<sub>1</sub>(concentration of 10&#x2009;&#x03BC;g/mL). The residual AFB<sub>1</sub> was then analyzed as previously described.</p>
</sec>
<sec id="sec9">
<label>2.7</label>
<title>Degradation of AFB<sub>1</sub> active components in target strains treated with different treatments</title>
<p>The degradation of AFB<sub>1</sub> active components in target strains was fractionated into four components, and the effects of proteinase K (PK, 1&#x2009;mg/mL), sodium dodecyl sulfate (SDS, 1%), PK&#x2009;+&#x2009;SDS, and heat treatment (boiled for 20&#x2009;min) on the degradation of AFB<sub>1</sub> were investigated. Subsequently, each component was incubated with sterile PBS containing AFB<sub>1</sub> at a 10&#x2009;&#x03BC;g/mL concentration at 37&#x00B0;C. A sterile PBS with AFB<sub>1</sub> concentration at 10&#x2009;&#x03BC;g/mL was used as a control. After 72&#x2009;h, residual AFB<sub>1</sub> was detected, as described earlier.</p>
</sec>
<sec id="sec10">
<label>2.8</label>
<title>Assessment of the toxicity of degradation products of AFB<sub>1</sub> by target bacterial strains</title>
<p>The survival monitoring assay utilized L-02 standard cells obtained from the Cell Preservation Bank at the Chinese Academy of Sciences in Shanghai, representing a human normal liver cell line. The NC group was cultured in RPMI 1640 medium, while the CC group was cultivated in AFB<sub>1</sub>-RPMI 1640 solution (AFB<sub>1</sub> concentration at 10&#x2009;&#x03BC;g/mL). The EG group was exposed to RPMI 1640 medium with 10% degradation solution. Then, L-02 cells were seeded at a density of 100,000 cells per well in a 24-well plate and incubated in RPMI 1640 medium at 37&#x00B0;C for 24&#x2009;h under a 5% CO<sub>2</sub> atmosphere to synchronize the population. Subsequently, the medium was replaced with fresh medium containing the test mentioned above samples. The survival monitoring assay was performed using the Vi-cell system (Thermo Scientific, Waltham, MA), and the cell morphology of each sample was compared with that of its corresponding control.</p>
</sec>
<sec id="sec11">
<label>2.9</label>
<title>Ames mutagenicity assay</title>
<p>To assess the mutagenic potential of the degradation products, the Ames test using the Genotoxic Ames kit (Iphase Bio Technology, Suzhou, China) following the manufacturer&#x2019;s instructions and the protocol outlined by <xref ref-type="bibr" rid="ref8">Chen et al. (2022)</xref>. The degradation products obtained from a 72-h co-culture with the AFB<sub>1</sub>-degrading bacterium and AFB<sub>1</sub> were incubated with <italic>Salmonella Typhimurium</italic> TA100 or TA102 at 37&#x00B0;C for 48&#x2009;h (EG). The count of <italic>S. typhimurium</italic> colonies was documented, and the results were expressed as the number of revertant colony-forming units (CFUs). Positive controls consisted of samples extracted from TSB medium with AFB<sub>1</sub>(CC), while negative controls included extracts from TSB medium without AFB<sub>1</sub>(NC).</p>
</sec>
<sec id="sec12">
<label>2.10</label>
<title>The degradation product extraction and isolation</title>
<p>The degradation liquid was concentrated to afford a crude residue which was suspended in H<sub>2</sub>O and then extracted with petroleum ether, EtOAc, and n-BuOH to afford fractions.</p>
<p>The petroleum ether fraction (50&#x2009;g) subjected to silica gel column chromatography (200&#x2013;300 mesh, Qingdao Haiyang Chemical Factory, Qingdao, China) with DCM and MeOH (1:0~0:1, v/v) gradient elution was distributed as two fractions (Fr1, 15&#x2009;g, Fr2 6.3&#x2009;g). Fr1(15&#x2009;g) was chromatographed on an ODS with MeOH/H<sub>2</sub>O (0:1~0:1, v/v), and then separated by preparative HPLC (MeOH/H<sub>2</sub>O, 40:60, V/V; flow rate, 4&#x2009;mL/min) to yield compounds 1 (tR&#x2009;=&#x2009;8.7&#x2009;min, 20.4&#x2009;mg), 2 (tR&#x2009;=&#x2009;6.8&#x2009;min, 14.6&#x2009;mg).</p>
<p>Fr2(6.3&#x2009;g) was separated by silica gel column chromatography (cc, 70&#x2009;&#x00D7;&#x2009;245&#x2009;mm) with DCM/MeOH (1:0&#x2009;~&#x2009;0:1, V/V) to provide two subfractions (Fr2-1, 1.3&#x2009;g; Fr2-2, 0.8&#x2009;g). Fr2-1(1.3&#x2009;g) was further separated by preparative HPLC (MeOH/H<sub>2</sub>O, 35:65, V/V; flow rate, 4&#x2009;mL/min) to yield 3 (tR&#x2009;=&#x2009;7.6&#x2009;min, 26.3&#x2009;mg), yield 4 (tR&#x2009;=&#x2009;5.4&#x2009;min, 10.5&#x2009;mg).</p>
</sec>
<sec id="sec13">
<label>2.11</label>
<title>Detection of the chemical composition of degradation products of AFB<sub>1</sub></title>
<p>The UPLC-Q-Orbitrap included a UPLC system equipped with an autoinjector and quaternary UPLC pump (Waters Acquity, Milford, MA, United States), and quadrupole/electrostatic field orbitrap high-resolution mass spectrometry (Q-Orbitrap HRMS; Thermo Scientific, Waltham, MA). The chromatograph was equipped with a BEH C18 column (100&#x2009;mm&#x2009;&#x00D7;&#x2009;2.1&#x2009;mm, 1.7&#x2009;&#x03BC;m) and operated at a column temperature of 40&#x00B0;C. Samples were injected and eluted using a mobile solvent containing mobile phase A, which was an aqueous solution containing 0.1% formic acid and 5&#x2009;mmol/L ammonium formate, and mobile phase B, a methanol solution containing 0.1% formic acid and 5&#x2009;mmol/L ammonium formate. The mass spectrometry parameters were set similar to that in previous study (<xref ref-type="bibr" rid="ref15">Lai et al., 2023</xref>).</p>
</sec>
<sec id="sec14">
<label>2.12</label>
<title>Detection of the molecular structure of the degraded product of AFB<sub>1</sub> and prediction of the AFB<sub>1</sub> degradation pathway</title>
<p>The <sup>1</sup>H and <sup>13</sup>C NMR experiments data were obtained by Bruker DPX-400 spectrometer in dimethyl sulfoxide-<italic>d</italic>6 (DMSO-<italic>d</italic>6; DPX-400, Bruker, Switzerland). The sample was equipped with a 5&#x2009;mm NORELL NMR tube and operated at 25&#x00B0;C. The data was analyzed using MestreNova software (ver. 14.2, Mestrelab Research, Escondido, CA). Then, BioTransformer 3.0 software<xref ref-type="fn" rid="fn0005"><sup>5</sup></xref> was used to predict the AFB<sub>1</sub> degradation pathway of YUAD7 based on the structure of degradation products.</p>
</sec>
<sec id="sec15">
<label>2.13</label>
<title>Statistical analysis</title>
<p>The results were presented as mean&#x2009;&#x00B1;&#x2009;standard deviation (SD). Statistical analysis was performed using SPSS software and involved ANOVA followed by Duncan&#x2019;s test. Different lowercase letters in the bars of each group indicated significant differences between treatments (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05).</p>
</sec>
</sec>
<sec sec-type="results" id="sec16">
<label>3</label>
<title>Results</title>
<sec id="sec17">
<label>3.1</label>
<title>Screening of target strains</title>
<p>As shown in <xref ref-type="table" rid="tab1">Table 1</xref>, 23 strains capable of utilizing coumarin were obtained using coumarin as the sole carbon source for enrichment and acclimation. YUAD7 exhibited the highest degradation rate, achieving a 91.7% degradation within 72&#x2009;h in TSB-AFB<sub>1</sub> solution with an AFB<sub>1</sub> concentration of 10&#x2009;&#x03BC;g/mL. Therefore, YUAD7 was chosen as the target strain for further research.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Sources of aflatoxin B<sub>1</sub> degradation strains and degradation.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">No.</th>
<th align="left" valign="top">Strain no.</th>
<th align="left" valign="top">Strain source</th>
<th align="center" valign="top">Degradation of AFB<sub>1</sub></th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">1</td>
<td align="left" valign="middle">MAAD32</td>
<td align="left" valign="top">Silage corn in Haixi Mongolian and Tibetan Autonomous Prefecture, Qinghai Province, China</td>
<td align="center" valign="middle">65.72&#x2009;&#x00B1;&#x2009;0.64%</td>
</tr>
<tr>
<td align="left" valign="middle">2</td>
<td align="left" valign="middle">ALAD18</td>
<td align="left" valign="top">Silage alfalfa in Haixi Mongolian and Tibetan Autonomous Prefecture, Qinghai Province, China</td>
<td align="center" valign="middle">73.43&#x2009;&#x00B1;&#x2009;1.03%</td>
</tr>
<tr>
<td align="left" valign="middle">3</td>
<td align="left" valign="middle">ALAD20</td>
<td align="left" valign="top">Silage alfalfa in Haixi Mongolian and Tibetan Autonomous Prefecture, Qinghai Province, China</td>
<td align="center" valign="middle">70.27&#x2009;&#x00B1;&#x2009;1.84%</td>
</tr>
<tr>
<td align="left" valign="middle">4</td>
<td align="left" valign="middle">YUAD7</td>
<td align="left" valign="top">Yak manure from Haixi Mongolian and Tibetan Autonomous Prefecture, Qinghai Province, China</td>
<td align="center" valign="middle">91.70&#x2009;&#x00B1;&#x2009;1.32%</td>
</tr>
<tr>
<td align="left" valign="middle">5</td>
<td align="left" valign="middle">YUAD11</td>
<td align="left" valign="top">Yak manure from Haixi Mongolian and Tibetan Autonomous Prefecture, Qinghai Province, China</td>
<td align="center" valign="middle">87.73&#x2009;&#x00B1;&#x2009;2.11%</td>
</tr>
<tr>
<td align="left" valign="middle">6</td>
<td align="left" valign="middle">MAXN23</td>
<td align="left" valign="top">Silage corn in Xining City, Qinghai Province, China</td>
<td align="center" valign="middle">73.65&#x2009;&#x00B1;&#x2009;1.21%</td>
</tr>
<tr>
<td align="left" valign="middle">7</td>
<td align="left" valign="middle">ALXN12</td>
<td align="left" valign="top">Silage alfalfa in Xining City, Qinghai Province, China</td>
<td align="center" valign="middle">45.21&#x2009;&#x00B1;&#x2009;2.63%</td>
</tr>
<tr>
<td align="left" valign="middle">8</td>
<td align="left" valign="middle">YUXN30</td>
<td align="left" valign="top">Yak manure in Xining City, Qinghai Province, China</td>
<td align="center" valign="middle">86.28&#x2009;&#x00B1;&#x2009;1.58%</td>
</tr>
<tr>
<td align="left" valign="middle">9</td>
<td align="left" valign="middle">MAWT8</td>
<td align="left" valign="top">Silage corn in Tianzhu Tibetan Autonomous County, Wuwei City, Gansu Province, China</td>
<td align="center" valign="middle">79.61&#x2009;&#x00B1;&#x2009;1.31%</td>
</tr>
<tr>
<td align="left" valign="middle">10</td>
<td align="left" valign="middle">MAWT14</td>
<td align="left" valign="top">Silage corn in Tianzhu Tibetan Autonomous County, Wuwei City, Gansu Province, China</td>
<td align="center" valign="middle">69.27&#x2009;&#x00B1;&#x2009;2.75%</td>
</tr>
<tr>
<td align="left" valign="middle">11</td>
<td align="left" valign="middle">ALWT17</td>
<td align="left" valign="top">Silage alfalfa in Tianzhu Tibetan Autonomous County, Wuwei City, Gansu Province, China</td>
<td align="center" valign="middle">83.11&#x2009;&#x00B1;&#x2009;1.27%</td>
</tr>
<tr>
<td align="left" valign="middle">12</td>
<td align="left" valign="middle">YUWT23</td>
<td align="left" valign="top">Yak manure in Tianzhu Tibetan Autonomous County, Wuwei City, Gansu Province, China</td>
<td align="center" valign="middle">53.28&#x2009;&#x00B1;&#x2009;2.09%</td>
</tr>
<tr>
<td align="left" valign="middle">13</td>
<td align="left" valign="middle">MADB12</td>
<td align="left" valign="top">Silage corn in Diebu County, Gannan Prefecture, Gansu Province, China</td>
<td align="center" valign="middle">68.12&#x2009;&#x00B1;&#x2009;0.89%</td>
</tr>
<tr>
<td align="left" valign="middle">14</td>
<td align="left" valign="middle">ALDB16</td>
<td align="left" valign="top">Silage alfalfa in Diebu County, Gannan Prefecture, Gansu Province, China</td>
<td align="center" valign="middle">70.21&#x2009;&#x00B1;&#x2009;1.56%</td>
</tr>
<tr>
<td align="left" valign="middle">15</td>
<td align="left" valign="middle">YUDB22</td>
<td align="left" valign="top">Yak manure in Diebu County, Gannan Prefecture, Gansu Province, China</td>
<td align="center" valign="middle">64.29&#x2009;&#x00B1;&#x2009;2.56%</td>
</tr>
<tr>
<td align="left" valign="middle">16</td>
<td align="left" valign="middle">MAXH3</td>
<td align="left" valign="top">Silage corn in Xiahe County, Gannan Prefecture, Gansu Province, China</td>
<td align="center" valign="middle">77.93&#x2009;&#x00B1;&#x2009;0.89%</td>
</tr>
<tr>
<td align="left" valign="middle">17</td>
<td align="left" valign="middle">ALXH27</td>
<td align="left" valign="top">Silage alfalfa in Xiahe County, Gannan Prefecture, Gansu Province, China</td>
<td align="center" valign="middle">74.94&#x2009;&#x00B1;&#x2009;1.68%</td>
</tr>
<tr>
<td align="left" valign="middle">18</td>
<td align="left" valign="middle">YUXH11</td>
<td align="left" valign="top">Yak manure in Xiahe County, Gannan Prefecture, Gansu Province, China</td>
<td align="center" valign="middle">86.26&#x2009;&#x00B1;&#x2009;3.01%</td>
</tr>
<tr>
<td align="left" valign="middle">19</td>
<td align="left" valign="middle">ALGT15</td>
<td align="left" valign="top">Silage alfalfa in Gaotai County, Zhangye City, Gansu Province, China</td>
<td align="center" valign="middle">73.28&#x2009;&#x00B1;&#x2009;1.48%</td>
</tr>
<tr>
<td align="left" valign="middle">20</td>
<td align="left" valign="middle">YUGT38</td>
<td align="left" valign="top">Yak manure in Gaotai County, Zhangye City, Gansu Province, China</td>
<td align="center" valign="middle">88.32&#x2009;&#x00B1;&#x2009;3.17%</td>
</tr>
<tr>
<td align="left" valign="middle">21</td>
<td align="left" valign="middle">MASN</td>
<td align="left" valign="top">Silage Corn in Sunan County, Zhangye City, Gansu Province, China</td>
<td align="center" valign="middle">46.11&#x2009;&#x00B1;&#x2009;1.55%</td>
</tr>
<tr>
<td align="left" valign="middle">22</td>
<td align="left" valign="middle">ALSN</td>
<td align="left" valign="top">Silage alfalfa in Sunan County, Zhangye City, Gansu Province, China</td>
<td align="center" valign="middle">65.29&#x2009;&#x00B1;&#x2009;1.62%</td>
</tr>
<tr>
<td align="left" valign="middle">23</td>
<td align="left" valign="middle">YUSN</td>
<td align="left" valign="top">Yak manure in Sunan County, Zhangye City, Gansu Province, China</td>
<td align="center" valign="middle">75.48&#x2009;&#x00B1;&#x2009;2.73%</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>YUAD7&#x2019;s ability to degrade AFB<sub>1</sub> at different concentrations was assessed under consistent incubation time and temperature condition. As depicted in <xref ref-type="fig" rid="fig1">Figure 1A</xref>, When the AFB<sub>1</sub> concentration was below 6&#x2009;&#x03BC;g/mL, apart from the initial 24-h, the degradation percentages of AFB<sub>1</sub> by YUAD7 were consistently similar across treatments during the 96-h incubation. The degradation rates nearly reached their maximum at 72-h, exceeding 99%. Furthermore, when the AFB<sub>1</sub> concentrations were 8 and 10&#x2009;&#x03BC;g/mL, YUAD7 exhibited time-dependent degradation, achieving a reduction of over 94% by 96-h (AFB<sub>1</sub> 10&#x2009;&#x03BC;g/mL). Considering the maximum level in raw cereal grains (<xref ref-type="bibr" rid="ref7">Campos-Avelar et al., 2021</xref>), 10&#x2009;&#x03BC;g/mL AFB<sub>1</sub> was chosen for the subsequent research.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>The strain YUAD7 degrades AFB<sub>1</sub> in different substrates. <bold>(A)</bold> The degradation of different concentrations of AFB<sub>1</sub> by strain YUAD7 in TSB-AFB<sub>1</sub> medium. <bold>(B)</bold> YUAD7 degrades AFB<sub>1</sub> in real food samples.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g001.tif"/>
</fig>
<p>YUAD7 was employed to degrade AFB<sub>1</sub> in real food samples, as shown in <xref ref-type="fig" rid="fig1">Figure 1B</xref>. AFB<sub>1</sub> levels in all negative control treatments were below the limit of detection [LOD: 0.003&#x2009;&#x03BC;g/g (mL)]. In the positive controls of maize, cheese, and peanuts, AFB<sub>1</sub> levels were 10.84&#x2009;&#x00B1;&#x2009;0.17, 10.73&#x2009;&#x00B1;&#x2009;0.35, and 9.83&#x2009;&#x00B1;&#x2009;0.26&#x2009;&#x03BC;g/g, respectively. After inoculating YUAD7 for AFB<sub>1</sub> degradation, the levels in maize, cheese, and peanuts were reduced to 1.62&#x2009;&#x00B1;&#x2009;0.08, 1.43&#x2009;&#x00B1;&#x2009;0.06, and 1.24&#x2009;&#x00B1;&#x2009;0.05&#x2009;&#x03BC;g/g, respectively. When AFB<sub>1</sub> contamination in food reached 10&#x2009;&#x03BC;g/g, YUAD7 effectively removed over 85% of AFB<sub>1</sub> from real food samples within 72&#x2009;h.</p>
</sec>
<sec id="sec18">
<label>3.2</label>
<title>Physiological and biochemical characteristics of the YUAD7 strain</title>
<p>Strain YUAD7 morphological, characteristics physiological and biochemical characteristics were shown in <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 1</xref> and <xref ref-type="supplementary-material" rid="SM1">Supplementary Table 1</xref>. Referencing Bergey&#x2019;s Manual of Systematic Bacteriology (<xref ref-type="bibr" rid="ref10">Garrity, 1994</xref>), the strain YUAD7 was preliminarily identified as belonging to the <italic>Bacillus</italic>.</p>
</sec>
<sec id="sec19">
<label>3.3</label>
<title>Genetic characterization of the YUAD7 strain</title>
<p>Whole genome sequencing was performed on strain YUAD7, and the results were shown in <xref ref-type="supplementary-material" rid="SM1">Supplementary Table 2</xref> and <xref ref-type="fig" rid="fig2">Figure 2A</xref>. The complete genome of YUAD7 was a circular chromosome with a size of 4,028,188&#x2009;bp and a G&#x2009;+&#x2009;C content of 46.4%. The DNA coding sequences encompassed 3,628,166&#x2009;bp, constituting approximately 90.07% of the total genome. Following genome assembly and prediction annotation, a total of 4,172 predicted genes were identified, of which 4,054 were CDSs and 118 were RNA genes. Upon manual prediction and annotation, 3,218 and 2,106 predicted genes were annotated in the GO and KEGG databases. Based on the analysis of 16S rRNA and 30 housekeeping genes, including <italic>acnA</italic>, <italic>dacB</italic>, <italic>licR</italic>, <italic>mfd</italic>, <italic>lplJ</italic>, <italic>lpdA</italic>, <italic>lepA</italic>, <italic>secA</italic>, <italic>budA</italic>, <italic>atpA</italic>, <italic>gltB</italic>, <italic>bamA</italic>, <italic>rfbF</italic>, <italic>rpoC</italic>, <italic>rpoB</italic>, <italic>leuS</italic>, <italic>dnaE</italic>, <italic>thrS</italic>, <italic>pheT</italic>, <italic>hsdR</italic>, <italic>recJ</italic>, <italic>pbpA</italic>, <italic>SerA</italic>, <italic>dinG</italic>, <italic>mobl</italic>, <italic>rarD</italic>, <italic>gltB</italic>, <italic>xynB</italic>, <italic>pyc</italic>, and <italic>lpdA</italic>, the closest relative of YUAD7 was <italic>Bacillus</italic>. <italic>amyloliquefaciens</italic> strain (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 2</xref>). Consequently, the strain mentioned above was designated as <italic>Bacillus. amyloliquefaciens</italic> YUAD7.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Genome characterization of the YUAD7 strain. <bold>(A)</bold> Circular representation of the <italic>Bacillus amyloliquefaciens</italic> YUAD7 complete genome. From the outmost: 1, Genome structure positive and negative strands; 2, GC Skew; 3, GC content. <bold>(B)</bold> GO analysis of annotated coding genes in <italic>B. amyloliquefaciens</italic> YUAD7 genome. From the outmost: 1, GO ID. 2, Background genes. 3, Upregulated and downregulated genes. 4, Enrichment coefficients. <bold>(C)</bold> KEGG pathway classification of annotated coding genes in <italic>B. amyloliquefaciens</italic> YUAD7 genome.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g002.tif"/>
</fig>
<p>YUAD7&#x2019;s CDSs annotation information in the GO and KEGG databases was shown in <xref ref-type="fig" rid="fig2">Figures 2B</xref>,<xref ref-type="fig" rid="fig2">C</xref>, respectively. <xref ref-type="fig" rid="fig2">Figure 2B</xref> indicated that the annotation information of YUAD7&#x2019;s encoded genes in the GO database mainly fell into three categories: biological process, cellular component, and molecular function, such as oxidation-dependent protein catabolic process (GO: 0070407), polysaccharide biosynthetic process (GO: 0000271), carbohydrate catabolic process (GO: 0044193), hydroxyisourate hydrolase complex (GO: 0106232), O6-methyl-dGTP hydrolase activity (GO: 0106433), and stearyl deacetylase activity (GO: 0034084). Furthermore, in <xref ref-type="fig" rid="fig2">Figure 2C</xref>, KEGG annotation information demonstrated that the functions annotated by gene sequences in the primary metabolic pathways could be divided into four categories: cellular processes, environmental information processing, genetic information processing, and metabolism. These findings provide an understanding of the functional genes and metabolic pathways involved in AFB<sub>1</sub> degradation by <italic>B. amyloliquefaciens</italic> YUAD7 at the genomic level. These predicted metabolic pathways and functional genes were closely associated with the process of AFB<sub>1</sub> degradation by the strain.</p>
<p>All the data indicated that <italic>B. amyloliquefaciens</italic> YUAD7 could serve as a beneficial and safe bacterium to be applied in food and feed processing.</p>
</sec>
<sec id="sec20">
<label>3.4</label>
<title>The active component for AFB<sub>1</sub> degradation in <italic>Bacillus amyloliquefaciens</italic> YUAD7 and its characteristics</title>
<p>In order to investigate the mechanism of AFB<sub>1</sub> removal by <italic>B. amyloliquefaciens</italic> YUAD7, the study tested the efficiency of cell-free supernatant, intracellular extracts, and dead cells in degrading AFB<sub>1</sub>. As shown in <xref ref-type="fig" rid="fig3">Figure 3A</xref>, after 72-h of cultivation, cell-free supernatant could remove 75.42%&#x2009;&#x00B1;&#x2009;3.09% of AFB<sub>1</sub> (10&#x2009;&#x03BC;g/mL), while the removal rates for dead cells and intracellular extracts were 4.36%&#x2009;&#x00B1;&#x2009;0.61% and 12.63%&#x2009;&#x00B1;&#x2009;2.05%, respectively. The cell-free supernatant of <italic>B. amyloliquefaciens</italic> YUAD7 was more effective in reducing AFB<sub>1</sub> than dead cells and intracellular extracts (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05). These results suggested that the removal of AFB<sub>1</sub> by <italic>B. amyloliquefaciens</italic> YUAD7 was mainly dependent on degradation, and the cell-free supernatant was the main active component in the AFB<sub>1</sub> degradation process. SDS, proteinase K (PK), and PK&#x2009;+&#x2009;SDS effected on the activity of YUAD7&#x2019;s cell-free supernatant in degrading AFB<sub>1</sub> was shown in <xref ref-type="fig" rid="fig3">Figure 3B</xref>, AFB<sub>1</sub> degradation capacity of the cell-free supernatant rated down to 52.85%&#x2009;&#x00B1;&#x2009;2.25%, 13.26%&#x2009;&#x00B1;&#x2009;2.88%, and 7.36%&#x2009;&#x00B1;&#x2009;0.95%. The result indicated that the AFB<sub>1</sub> degradation agents in <italic>B. amyloliquefaciens</italic> YUAD7 cell-free supernatant included not only enzymes or proteins but also other non-protein components. Additionally, the cell-free supernatant still exhibited AFB<sub>1</sub> degradation activity of 43.16&#x2009;&#x00B1;&#x2009;3.54% even after boiling for 20&#x2009;min (<xref ref-type="fig" rid="fig3">Figure 3B</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Identification of active substances and factors influencing the activity of strain YUAD7 in the degradation of AFB<sub>1</sub>. <bold>(A)</bold> AFB<sub>1</sub> degradation by diverse cell components of <italic>Bacillus amyloliquefaciens</italic> YUAD7 during 72-h incubation with 10&#x2009;&#x03BC;g/mL AFB<sub>1</sub> at 37&#x00B0;C. <bold>(B)</bold> Effects of heat, PK, SDS, and PK&#x2009;+&#x2009;SDS on AFB<sub>1</sub> degradation mediated by the cell-free supernatant after co-incubation for 72-h with 10&#x2009;&#x03BC;g/mL AFB<sub>1</sub> at 37&#x00B0;C.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g003.tif"/>
</fig>
</sec>
<sec id="sec21">
<label>3.5</label>
<title>Toxicity of the products of AFB<sub>1</sub> degradation by strain YUAD7</title>
<p>The study examined the impact of AFB<sub>1</sub> and its degradation products by <italic>B. amyloliquefaciens</italic> YUAD7 on the lifespan of L-02 cells. As shown in <xref ref-type="fig" rid="fig4">Figure 4A</xref>, there was no statistical difference (<italic>p</italic> &#x003E;&#x2009;0.05) in cell viability between the EG group and the NC group, with L-02 cell survival rates exceeding 92%. However, the CC group exhibited a 62.5% decrease in the average lifespan of L-02 cells. The morphological changes of L-02 cells under different treatment conditions within 72-h of cultivation were shown in <xref ref-type="fig" rid="fig4">Figure 4B</xref>. Compared to the NC group, the EG group showed no significant differences in cell morphology (<italic>p</italic> &#x003E;&#x2009;0.05). In contrast, the CC group exhibited cell elongation, lysis phenomena, and a significant reduction in cell viability. These results showed that <italic>B. amyloliquefaciens</italic> YUAD7 degraded AFB<sub>1</sub> into metabolites without toxicity to the L-02 cells. Meanwhile, the Ames test was employed to evaluate the mutagenic potential of AFB<sub>1</sub> degradation products facilitated by <italic>B. amyloliquefaciens</italic> YUAD7. Compared to the control group, a roughly twofold increase in the count of revertant CFUs from <italic>S. typhimurium</italic> TA100 and TA102 was noted in the AFB<sub>1</sub> group (CC). However, there was no statistically significant difference in revertant CFUs between the degradation products (EG) and the control group (NC; <xref ref-type="fig" rid="fig4">Figure 4C</xref>), indicating that <italic>B. amyloliquefaciens YUAD7</italic> transformed AFB<sub>1</sub> into metabolites with diminished mutagenicity.</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Toxicological results of YUAD7 degradation products. <bold>(A)</bold> Changes in the lifespan of L-02 cells caused by different treatment groups. <bold>(B)</bold> Changes in cell morphology in different treatment groups within 72&#x2009;h. <bold>(C)</bold> The Ames mutagenicity assay. NC group: medium without AFB<sub>1</sub>. EG group: medium with AFB<sub>1</sub> degradation liquid of YUAD7. CC group: medium with AFB<sub>1</sub>.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g004.tif"/>
</fig>
</sec>
<sec id="sec22">
<label>3.6</label>
<title>Identification and analysis of AFB<sub>1</sub> metabolic degradation products</title>
<p>Chemical components of AFB<sub>1</sub> degradation products by strain YUAD7 were analyzed using the UPLC-Q-Orbitrap HRMS method. The characteristic ions of AFB<sub>1</sub> standard compounds, which were m/z 213, 128, 115, 77, 69, and 43, respectively (<xref ref-type="fig" rid="fig5">Figure 5A</xref>). Comparing the fragment ions of AFB<sub>1</sub> and the compounds in degradation solution, compound 1&#x2013;4 had high homology with the fragment ions of AFB<sub>1</sub>, and compound 1&#x2013;4 were the products of the degradation of AFB<sub>1</sub> by the <italic>B. amyloliquefaciens</italic> YUAD7 (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 3</xref>).</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>The mass spectra and chemical formula of AFB<sub>1</sub> standards and the compounds in degradation solution. <bold>(A)</bold> C<sub>17</sub>H<sub>12</sub>O<sub>6</sub>. <bold>(B)</bold> C<sub>12</sub>H<sub>14</sub>O<sub>4</sub>. <bold>(C)</bold> C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>. <bold>(D)</bold> C<sub>10</sub>H<sub>14</sub>O<sub>2</sub>. <bold>(E)</bold> C<sub>4</sub>H<sub>12</sub>N<sub>2</sub>O.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g005.tif"/>
</fig>
<p>Compound 1 was isolated as white powder. Its molecular formula was established as C<sub>12</sub>H<sub>14</sub>O<sub>4</sub> by UPLC-Q-Qrbitrap HRMS (m/z 222.0892), sharing several homologous fragment ions with AFB<sub>1</sub>, such as 213, 128, 115, 77, 69, 43, etc. (<xref ref-type="fig" rid="fig5">Figure 5B</xref>). Its <sup>1</sup>H NMR spectrum (<xref ref-type="table" rid="tab2">Table 2</xref>) showed characteristic signals for the hydrogen of ABX coupling system on the benzene ring [&#x03B4;<sub>H</sub>7.34 (1H, d, J&#x2009;=&#x2009;8.2&#x2009;Hz, H-6), 6.75(1H, dd, J&#x2009;=&#x2009;8.1, 2.3&#x2009;Hz, H-1), and 6.52(1H, d, J&#x2009;=&#x2009;2.2&#x2009;Hz, H-3)]; &#x03B4;<sub>H</sub>3.80(3H, s, H-7), 2.42(3H, s, H-9),3.86(3H, s, H-12)] were three methoxy hydrogen signals. &#x03B4;<sub>H</sub>6.14 (1H, q, J&#x2009;=&#x2009;1.3&#x2009;Hz, H-10) was the hypomethyl hydrogen signal. Analysis of the <sup>13</sup>C NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>) revealed 12 carbon signals, including 6 carbon signals on the benzene ring, three methoxy carbon signals (&#x03B4;<sub>C</sub>55.67, 20.44, 55.92), and three sp<sup>3</sup> hybridized carbon data[&#x03B4;<sub>C</sub>153.39(C-8), 115.33(C-10), 170.01(C-11)] which indicated that compound 1 had the basic skeleton of dimethoxy benzene. The determination of the -CH linkage position and its sequential arrangement within compound 1 was determined by HSQC spectra (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 6</xref>). The benzene ring structure suggested by HSQC correlations from &#x03B4;<sub>H</sub>7.34 (1H, d, J&#x2009;=&#x2009;8.2&#x2009;Hz, H-6) to &#x03B4;<sub>C</sub>129.36(C-6), &#x03B4;<sub>H</sub>6.75(1H, dd, J&#x2009;=&#x2009;8.1, 2.3&#x2009;Hz, H-1) to &#x03B4;<sub>C</sub>107.87(C-1), &#x03B4;<sub>H</sub>6.52(1H, d, J&#x2009;=&#x2009;2.2&#x2009;Hz, H-3) to &#x03B4;<sub>C</sub>97.85(C-3). The three methyl groups were at C7, C9 and C12 positions, respectively, [&#x03B4;<sub>H</sub>3.80 (3H, s) to &#x03B4;<sub>C</sub>55.67(C-7), &#x03B4;<sub>H</sub>2.42 (3H, s) to &#x03B4;<sub>C</sub>20.44(C-9), &#x03B4;<sub>H</sub>3.86 (3H, s) to &#x03B4;<sub>C</sub>55.92(C-12). Finally, the hydrocarbon formation pertaining to compound 1 was precisely ascribed through the chemical formula, <sup>1</sup>H NMR, <sup>13</sup>C NMR, HSQC, and the structure of compound 1 was (2-4-dimethoxyphenyl) but-2-enoic acid (<xref ref-type="fig" rid="fig6">Figure 6A</xref>).</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p><sup>1</sup>H NMR (500&#x2009;MHz) and <sup>13</sup>C NMR (125&#x2009;MHz) Data of 1&#x2013;4 in DMSO-<italic>d</italic>6 (&#x03B4; in ppm, J in Hz).</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">No</th>
<th align="center" valign="top" colspan="2">1</th>
<th align="center" valign="top" colspan="2">2</th>
<th align="center" valign="top" colspan="2">3</th>
<th align="center" valign="top" colspan="2">4</th>
</tr>
<tr>
<th align="center" valign="top">&#x03B4;<sub>H</sub></th>
<th align="center" valign="top">&#x03B4;<sub>C</sub></th>
<th align="center" valign="top">&#x03B4;<sub>H</sub></th>
<th align="center" valign="top">&#x03B4;<sub>C</sub></th>
<th align="center" valign="top">&#x03B4;<sub>H</sub></th>
<th align="center" valign="top">&#x03B4;<sub>C</sub></th>
<th align="center" valign="top">&#x03B4;<sub>H</sub></th>
<th align="center" valign="top">&#x03B4;<sub>C</sub></th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">1</td>
<td align="center" valign="middle">6.75 (dd, J&#x2009;=&#x2009;8.1, 2.3, 1H)</td>
<td align="center" valign="middle">107.87</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">2</td>
<td/>
<td align="center" valign="middle">161.64</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">3</td>
<td align="center" valign="middle">6.52 (d, J&#x2009;=&#x2009;2.2, 1H)</td>
<td align="center" valign="middle">97.85</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">4</td>
<td/>
<td align="center" valign="middle">160.68</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">5</td>
<td/>
<td align="center" valign="middle">120.64</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">6</td>
<td align="center" valign="middle">7.34 (d, J&#x2009;=&#x2009;8.2, 1H)</td>
<td align="center" valign="middle">129.36</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">7</td>
<td align="center" valign="middle">3.80 (s, 3H)</td>
<td align="center" valign="middle">55.67</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">8</td>
<td/>
<td align="center" valign="middle">153.39</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">9</td>
<td align="center" valign="middle">2.42 (s, 3H)</td>
<td align="center" valign="middle">20.44</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">10</td>
<td align="center" valign="middle">6.14 (q, J&#x2009;=&#x2009;1.3, 1H)</td>
<td align="center" valign="middle">115.33</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">11</td>
<td/>
<td align="center" valign="middle">170.01</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">12</td>
<td align="center" valign="middle">3.86 (s, 3H)</td>
<td align="center" valign="middle">55.92</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">1&#x2033;</td>
<td/>
<td/>
<td align="center" valign="middle">2.38 (s, 3H)</td>
<td align="center" valign="middle">45.89</td>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">1a&#x2033;</td>
<td/>
<td/>
<td align="center" valign="middle">2.38 (s, 3H)</td>
<td align="center" valign="middle">45.89</td>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">2&#x2033;</td>
<td/>
<td/>
<td align="center" valign="middle">2.89 (t, J&#x2009;=&#x2009;6.7, 2H)</td>
<td align="center" valign="middle">58.52</td>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">3&#x2033;</td>
<td/>
<td/>
<td align="center" valign="middle">4.26 (t, J&#x2009;=&#x2009;6.7, 2H)</td>
<td align="center" valign="middle">62.73</td>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">4&#x2033;</td>
<td/>
<td/>
<td align="center" valign="middle">4.88 (s, 2H)</td>
<td align="center" valign="middle">157.14</td>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">1&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">1.67&#x2013;1.61 (m, 3H)</td>
<td align="center" valign="middle">18.03</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">2&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">132.41</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">3&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">1.67&#x2013;1.61 (m, 3H)</td>
<td align="center" valign="middle">25.59</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">4&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">5.38 (th, J&#x2009;=&#x2009;6.6, 1.6, 1H)</td>
<td align="center" valign="middle">122.49</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">5&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">2.74 (dddq, J&#x2009;=&#x2009;7.1, 6.2, 2.0, 1.0, 2H)</td>
<td align="center" valign="middle">27.09</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">6&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">6.51 (tq, J&#x2009;=&#x2009;5.9, 1.4, 1H)</td>
<td align="center" valign="middle">143.36</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">7&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">137.16</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">8&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">3.00 (dq, J&#x2009;=&#x2009;5.8, 1.0, 2H)</td>
<td align="center" valign="middle">40.40</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">9&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">9.83&#x2013;9.75 (m, 1H)</td>
<td align="center" valign="middle">200.36</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="middle">9a&#x2032;</td>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="middle">9.83&#x2013;9.75 (m, 1H)</td>
<td align="center" valign="middle">194.32</td>
<td/>
<td/>
</tr>
<tr>
<td align="left" valign="top">1&#x2034;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="top">2.88&#x2013;2.68 (m, 2H)</td>
<td align="center" valign="top">41.58</td>
</tr>
<tr>
<td align="left" valign="top">2&#x2034;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="top">1.43 (t, J&#x2009;=&#x2009;6.5, 2H)</td>
<td/>
</tr>
<tr>
<td align="left" valign="top">3&#x2034;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="top">1.82&#x2013;1.51 (m, 2H)</td>
<td align="center" valign="top">29.71</td>
</tr>
<tr>
<td align="left" valign="top">4&#x2034;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="top">1.82&#x2013;1.51 (m, 2H)</td>
<td align="center" valign="top">25.19</td>
</tr>
<tr>
<td align="left" valign="top">5&#x2034;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="top">3.53 (d, J&#x2009;=&#x2009;11.7, 2H)</td>
<td align="center" valign="top">73.17</td>
</tr>
<tr>
<td align="left" valign="top">5a&#x2034;</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td align="center" valign="top">5.45 (s, 2H)</td>
<td/>
</tr>
</tbody>
</table>
</table-wrap>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>Structure of the main products of AFB<sub>1</sub> degradation by strain YUAD7. <bold>(A)</bold> C<sub>12</sub>H<sub>14</sub>O<sub>4</sub>. <bold>(B)</bold> C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>. <bold>(C)</bold> C<sub>10</sub>H<sub>14</sub>O<sub>2</sub>. <bold>(D)</bold> C<sub>4</sub>H<sub>12</sub>N<sub>2</sub>O.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g006.tif"/>
</fig>
<p>Compound 2 was isolated as a yellow powder with the molecular formula C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>, which was established by UPLC-Q-Orbitrap HRMS (m/z 132.0898), sharing several homologous fragment ions with AFB<sub>1</sub> such as 128, 115, 77, 69, 43, etc. (<xref ref-type="fig" rid="fig5">Figure 5C</xref>). The <sup>1</sup>H NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>) of 2 showed the hydrogen signal of two methoxies [&#x03B4;<sub>H</sub> 2.38 (3H, s, H-1&#x2033;, H-1a&#x00B4;&#x00B4;)]. &#x03B4;<sub>H</sub> 2.89 (2H, t, J&#x2009;=&#x2009;6.7&#x2009;Hz, H-2&#x2033;) and 4.26 (2H, t, J&#x2009;=&#x2009;6.7&#x2009;Hz, H-3&#x2033;) were two hydrogen signals on methylene, and &#x03B4;<sub>H</sub> 4.88 (2H, s, H-4&#x2033;) was the nitrile hydrogen signal. <sup>13</sup>C NMR spectra (<xref ref-type="table" rid="tab2">Table 2</xref>) showed the presence of 5 carbon signals. Among them, 2 signals belonged to 2 methoxies [&#x03B4;<sub>C</sub> 45.89 (C-1&#x2033;) and (C-1a&#x2033;)]. &#x03B4;<sub>C</sub> 58.52 (C-2&#x2033;) and 62.73(C-3&#x2033;) were the methylene carbon signal. &#x03B4;<sub>C</sub>157.14 (C-4&#x2033;) were the aminoester group carbon signal. Based on the above date, as well as HSQC data (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 9</xref>), 2 was speculated 2-(dimethylamino) ethyl carbamate (<xref ref-type="fig" rid="fig6">Figure 6B</xref>).</p>
<p>Compound 3 was obtained as a yellow powder and the UPLC-Q-Orbitrap HRMS data of 3 (m/z 166.0993, calcd for C<sub>10</sub>H<sub>14</sub>O<sub>2</sub>) indicated its molecular formula of C<sub>10</sub>H<sub>14</sub>O<sub>2</sub>, sharing several homologous fragment ions with AFB<sub>1</sub> such as 128, 115, 77, 69, 43, etc. (<xref ref-type="fig" rid="fig5">Figure 5D</xref>). In the <sup>1</sup>H NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>) &#x03B4;<sub>H</sub> 1.67&#x2013;1.61(3H, m, H-1&#x2032;, H-3&#x2032;) were the characteristic hydrogen signals of the methoxy. &#x03B4;<sub>H</sub> 5.38 (1H, th, J&#x2009;=&#x2009;6.6, 1.6&#x2009;Hz, H-4&#x2032;) and 6.51(1H, tq, J&#x2009;=&#x2009;5.9,1.4&#x2009;Hz, H-6&#x2032;) were two methenyl hydrogen signals. &#x03B4;<sub>H</sub> 2.74 (2H, dddq, J&#x2009;=&#x2009;7.1, 6.2, 2.0, 1.0&#x2009;Hz, H-5&#x2032;) and 3.00 (2H, dp, J&#x2009;=&#x2009;5.8,1.0&#x2009;Hz, H-8&#x2032;) were two hydrogen signals on methylene. &#x03B4;<sub>H</sub> 9.83&#x2013;9.75 (1H, m, H-9&#x2032;, H-9a&#x2032;) were two formyl hydrogen signals. The <sup>13</sup>C NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>) of 3 showed 10 carbon signals, including 2 methoxy hydrogen signals, 2 methene signals, 2 methenyl signals, 2 formyl signals, and 2 other sp3 hybrid carbon signals. The above HRMS and NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 12</xref>) indicated that 3 was polyunsaturated fatty acid structure (<xref ref-type="fig" rid="fig6">Figure 6C</xref>).</p>
<p>Compound 4 was isolated as a yellow powder and its molecular formula was deduced as C<sub>4</sub>H<sub>12</sub>N<sub>2</sub>O on the basis of its UPLC-Q-Orbitrap HRMS data (m/z 104.0949), sharing several homologous fragment ions with AFB<sub>1</sub> such as 77, 69, 43 etc. (<xref ref-type="fig" rid="fig5">Figure 5E</xref>). The <sup>1</sup>H NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 15</xref>) of 4 showed the hydrogen signals of the aminomethyl group [&#x03B4;<sub>H</sub> 2.88&#x2013;2.68 (2H, m, H-1&#x2034;), 1.43 (2H, t, J&#x2009;=&#x2009;6.5&#x2009;Hz, H-2&#x2034;)]. &#x03B4;<sub>H</sub> 1.82&#x2013;1.51(2H, m, H-3&#x2034;, H-4&#x2034;) and &#x03B4;<sub>H</sub> 3.53 (2H, d, J&#x2009;=&#x2009;11.7, H-5&#x2034;) were the hydrogen signals of methylen. &#x03B4;<sub>H</sub> 5.45 (2H, s, H-5a&#x2034;) was the aminogruppe hydrogen signal. The <sup>13</sup>C NMR data (<xref ref-type="table" rid="tab2">Table 2</xref>) of 4 showed 4 carbon signals, including 3 carbon signals on methylene signals, 1 aminomethyl group signal. The compound 4 was the 1-aminooxy-4-aminobutane (<xref ref-type="fig" rid="fig6">Figure 6D</xref>).</p>
<p>The structure of degradation products by the strain were determined using NMR as shown in <xref ref-type="fig" rid="fig6">Figure 6</xref>. The chemical structures of the products were primarily consisted of dimethoxyphenyl and enoic acid (compound 1), dimethylamino and ethyl carbamate (compound 2), polyunsaturated fatty acid (compound 3), and aminomethyl (compound 4). Among these four product structures, there were no structures that were associated with the high toxicity of AFB<sub>1</sub>, including the furan ring double bond, coumarin lactone ring, and cyclopentenone ring.</p>
</sec>
<sec id="sec23">
<label>3.7</label>
<title>Prediction of AFB<sub>1</sub> degradation pathway by YUAD7 strain</title>
<p>Based on the structure of the degradation products, it could be inferred that <italic>B. amyloliquefaciens</italic> YUAD7 mainly degraded AFB<sub>1</sub> through secondary degradation (<xref ref-type="fig" rid="fig7">Figure 7</xref>). Primary degradation was achieved through hydrogenation and enzyme modification, directly cleaving the coumarin moiety (at positions 10, 11, and 15) and the cyclopentenone ring (at position 14) structures from the AFB<sub>1</sub> parent structure. Simultaneously, the modification disrupted the furan ring structure at positions 8 and 9, resulting in the formation of compound C<sub>12</sub>H<sub>14</sub>O<sub>4</sub>. Moreover, an enzymatic modification added reactions that collided with the [N<sup>+</sup>H<sup>+</sup>] ion precursor bound, possibly forming the compound C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>. Secondary degradation involved further decomposition of the primary degradation products C<sub>12</sub>H<sub>14</sub>O<sub>4</sub> and C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>, primarily through the removal of the -CO moiety. In this process, the products underwent additional structural adjustments and cleavage, forming simpler compounds such as C<sub>10</sub>H<sub>14</sub>O<sub>2</sub> and C<sub>4</sub>H<sub>12</sub>N<sub>2</sub>O.</p>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>The hypothetical pathway of AFB<sub>1</sub> degradation by YUAD7.</p>
</caption>
<graphic xlink:href="fmicb-15-1367297-g007.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="sec24">
<label>4</label>
<title>Discussion</title>
<p>The <italic>B. amyloliquefaciens</italic> YUAD7 strains, isolated from Tibetan Plateau yak manure in this study, exhibited remarkable degradation capabilities of AFB<sub>1</sub>. <italic>Bacillus amyloliquefaciens</italic> YUAD7 could degrade AFB<sub>1</sub> at concentrations ranging from 1 to 6&#x2009;&#x03BC;g/mL by more than 99% and 8 to 10&#x2009;&#x03BC;g/mL by more than 91% after a 72-h incubation. These results surpassed the 84% reduction of AFB<sub>1</sub> concentration at 1&#x2013;5&#x2009;&#x03BC;g/mL reported for <italic>B. amyloliquefaciens</italic> WF2020 (<xref ref-type="bibr" rid="ref8">Chen et al., 2022</xref>) and were notably higher than the 73 and 40% reductions reported for <italic>B. amyloliquefaciens</italic> B10 (<xref ref-type="bibr" rid="ref32">Xiong et al., 2022</xref>) and S8C (<xref ref-type="bibr" rid="ref2">Ali et al., 2021</xref>), respectively. Moreover, after 96&#x2009;h of incubation, YUAD7 exhibited an impressive degradation of 94.60% for AFB<sub>1</sub> (10&#x2009;&#x03BC;g/mL). Among the <italic>Bacillus</italic> Spp. with the highest reported degradation efficiency, including <italic>B. amyloliquefaciens</italic> B10 (<xref ref-type="bibr" rid="ref32">Xiong et al., 2022</xref>), <italic>B. amyloliquefaciens</italic> WF2020 (<xref ref-type="bibr" rid="ref8">Chen et al., 2022</xref>), <italic>B. velezensis</italic> AD8 (<xref ref-type="bibr" rid="ref38">Zhao et al., 2022</xref>), <italic>B. albus</italic> YUN5 (<xref ref-type="bibr" rid="ref14">Kumar et al., 2023</xref>), <italic>B. subtilis</italic> JSW-1 (<xref ref-type="bibr" rid="ref31">Xia et al., 2017</xref>), and <italic>B. licheniformis</italic> CFR1 (<xref ref-type="bibr" rid="ref21">Rao et al., 2017</xref>), none achieved efficiency exceeding 90% in previous studies. The utilization of <italic>B. amyloliquefaciens</italic> YUAD7 held the promise of significant time and cost reductions, making this process more effective. In terms of ensuring the safety of probiotic microorganisms in food and feed, the FAO/WHO guidelines emphasized that probiotics were the best microorganisms to include in food and feed (<xref ref-type="bibr" rid="ref26">Song et al., 2022</xref>). <italic>Bacillus amyloliquefaciens</italic> was recognized as an intestinal probiotic for humans and mammals (<xref ref-type="bibr" rid="ref18">Marchese et al., 2018</xref>).</p>
<p><italic>Bacillus amyloliquefaciens</italic> YUAD7 primarily removed AFB<sub>1</sub> through degradation, with extracellular proteins or enzymes as the main active substances. This finding consisted with previous research on AFB<sub>1</sub> degradation by Bacillus species, including <italic>B. amyloliquefaciens</italic> WF2020 (<xref ref-type="bibr" rid="ref8">Chen et al., 2022</xref>), <italic>B. licheniformis</italic> CFR1 (<xref ref-type="bibr" rid="ref21">Rao et al., 2017</xref>), <italic>B. velezensis</italic> DY3108 (<xref ref-type="bibr" rid="ref25">Shu et al., 2018</xref>), and <italic>B. mojavensis</italic> RC3B (<xref ref-type="bibr" rid="ref11">Gonzalez et al., 2019</xref>). Moreover, the cell-free supernatant of <italic>B. amyloliquefaciens</italic> YUAD7 could still degrade AFB<sub>1</sub> by 43.2% after boiling for 20&#x2009;min, which was higher than that of <italic>B. amyloliquefaciens</italic> WF2020 (<xref ref-type="bibr" rid="ref8">Chen et al., 2022</xref>). Since mesophilic bacteria or enzymes often failed to endure the harsh reaction conditions required in industrial processes, it was highly beneficial that thermostable extracellular proteins or enzymes might provide robust and efficient catalyst substitutes that could withstand the harsh reaction conditions required in industrial processes.</p>
<p>Previous studies have reported the complete genome sequences of other Bacillus strains (<xref ref-type="bibr" rid="ref9">Fang et al., 2020</xref>; <xref ref-type="bibr" rid="ref8">Chen et al., 2022</xref>), however, these analyses needed more comprehensive annotation of functional genes and metabolic pathways. The functional bacteria research had indicated that through whole-genome annotation, the <italic>Enterobacter roggenkampii</italic> ED5 strain predicted metabolic processes and functional genes related to biological control (<xref ref-type="bibr" rid="ref13">Guo D. J. et al., 2020</xref>). In this study, based on whole-genome prediction, metabolic processes related to AFB<sub>1</sub> degradation included cellular processes, environmental information processing, genetic information processing, and metabolism. Functional genes involved were the oxidation-dependent protein catabolic process (GO: 0070407), polysaccharide biosynthetic process (GO: 0000271), and carbohydrate catabolic process (GO: 0044193). The full-genome analysis of <italic>B. amyloliquefaciens</italic> YUAD7 represented a valuable tool for identifying and categorizing genes involved in the biodegradation of AFB<sub>1</sub>, enabling a comprehensive insight into the functional genes and metabolic pathways underlying this process.</p>
<p>Meanwhile, the safety of microorganisms in food and feed was ensured through toxicological analysis of YUAD7 degradation products. As the AFB<sub>1</sub> toxin caused the most damage to liver cells (<xref ref-type="bibr" rid="ref3">Alvarez et al., 2019</xref>), normal human hepatocytes L-02 were chosen as the experimental subjects for the study to respond more sensitively to the toxicity of the degradation products on cells. The results were similar to those of studies on <italic>B. licheniformis</italic> ANSB821 (<xref ref-type="bibr" rid="ref12">Guo Y. et al., 2020</xref>), which degraded AFB<sub>1</sub> products assaying to L-02 cells. In summary, using <italic>B. amyloliquefaciens</italic> YUAD7 for AFB<sub>1</sub> degradation was safe, as both the strain and the degradation products were non-toxic. Non-toxic products contributed to reducing the processing steps for by-products during the removal of AFB<sub>1</sub> contamination in food and feed processing and ensured the safety of the degradation process.</p>
<p>The hydrogenation degradation pathway of YUAD7 was similar to the degradation pathway found by <italic>Aspergillus niger</italic> FS10. The <italic>Aspergillus niger</italic> FS10 degraded AFB<sub>1</sub> by successive hydrolysis-decarboxylation, breaking down the large AFB<sub>1</sub> molecule into non-toxic small molecules and removing the methoxy group from the benzene ring (<xref ref-type="bibr" rid="ref20">Qiu et al., 2021</xref>). The enzymatic modification degradation pathway was similar to the degradation of AFB<sub>1</sub> by <italic>B. licheniformis</italic> ANSB821, in which product presence of K and Na elements in the degradation products could result from enzyme binding to AFB<sub>1</sub> through modification, addition to AFB<sub>1</sub> molecules, and formation of [N<sup>+</sup>K<sup>+</sup>] and [N<sup>+</sup>Na<sup>+</sup>] ion precursors through collisions (<xref ref-type="bibr" rid="ref12">Guo Y. et al., 2020</xref>). <italic>Candida versatilis</italic> CGMCC 3790 degraded AFB<sub>1</sub> through the addition and hydrolysis pathway, resulting in four products with a chemical formula similar to that of YUAD7 degradation products (<xref ref-type="bibr" rid="ref16">Li et al., 2018</xref>). Through structural analysis of metabolites and speculation of metabolic pathways, it confirmed that YUAD7 degradation sites were the double bonds of the furan ring, vanillin endolipid ring, and pentenone ring structure of AFB<sub>1</sub>, and the carcinogenic, teratogenic, and mutagenic toxicity sites in AFB<sub>1</sub> was degraded through hydrolysis, enzyme modification, and loss of the -CO group for biological detoxification.</p>
<p>In the future, the incorporation of <sup>14</sup>C labeling technology will be anticipated, enabling the labeling of C atoms in AFB<sub>1</sub> and subsequently facilitating the meticulous tracking of its intricate degradation trajectory.</p>
</sec>
<sec sec-type="conclusions" id="sec25">
<label>5</label>
<title>Conclusion</title>
<p><italic>Bacillus amyloliquefaciens</italic> YUAD7, isolated from the extreme environment of the Qinghai-Tibet Plateau, can efficiently degrade AFB<sub>1</sub> at 10&#x2009;&#x03BC;g/mL, with a remarkable 91.7% efficiency within 72&#x2009;h. It also removes over 85.0% of AFB<sub>1</sub> from real food samples (AFB<sub>1</sub> concentration 10&#x2009;&#x03BC;g/g) within the same timeframe, establishing it as one of the most effective strains for degrading high AFB<sub>1</sub> concentrations. The YUAD7 strain primarily degraded AFB<sub>1</sub> through extracellular secretions and exhibited excellent thermal stability. Furthermore, <italic>B. amyloliquefaciens</italic> YUAD7 transformed AFB<sub>1</sub> into non-toxic small molecular compounds, including C<sub>12</sub>H<sub>14</sub>O<sub>4</sub>, C<sub>5</sub>H<sub>12</sub>N<sub>2</sub>O<sub>2</sub>, C<sub>10</sub>H<sub>14</sub>O<sub>2</sub>, and C<sub>4</sub>H<sub>12</sub>N<sub>2</sub>O, through processes such as hydrogenation, enzyme modification, and the loss of the -CO group. This capability was valuable for reducing AFB<sub>1</sub> contamination in food and feed processing. However, the degradation pathway of AFB<sub>1</sub> by the YUAD7 strain was inferred based on the structure of the degradation products in this study. In the future, <sup>14</sup>C tracing technology will be employed to meticulously trace the degradation pathway of YUAD7 in AFB<sub>1</sub> within real food samples. This will provide a more precise understanding of the degradation metabolic pathway, offering technical support for the application of YUAD7.</p>
</sec>
<sec sec-type="data-availability" id="sec26">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/<xref ref-type="supplementary-material" rid="SM1">Supplementary material</xref>.</p>
</sec>
<sec sec-type="ethics-statement" id="sec27">
<title>Ethics statement</title>
<p>Ethical approval was not required for the studies on animals in accordance with the local legislation and institutional requirements because only commercially available established cell lines were used.</p>
</sec>
<sec sec-type="author-contributions" id="sec28">
<title>Author contributions</title>
<p>YT: Conceptualization, Data curation, Investigation, Methodology, Software, Validation, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. XL: Conceptualization, Funding acquisition, Writing &#x2013; review &#x0026; editing. LD: Data curation, Methodology, Writing &#x2013; original draft. SH: Data curation, Methodology, Writing &#x2013; original draft.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec29">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This research was funded by National Natural Science Foundation of China (grant number 32171674), Lanzhou Talent Innovation and Entrepreneurship Program (grant number 2023-RC-40), Gansu Provincial Department of Education 2023 Graduate Student &#x201C;Innovation Star&#x201D; Program (grant number 2023CXZX-622), and Gansu Provincial Science and Technology Department Key R&#x0026;D Project (grant number 20YF8NA130).</p>
</sec>
<sec sec-type="COI-statement" id="sec30">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="sec31">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2024.1367297/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2024.1367297/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.pdf" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<fn-group>
<fn id="fn0001"><p><sup>1</sup><ext-link xlink:href="https://blast.ncbi.nlm.nih.gov/Blast.cgi" ext-link-type="uri">https://blast.ncbi.nlm.nih.gov/Blast.cgi</ext-link></p></fn>
<fn id="fn0002"><p><sup>2</sup><ext-link xlink:href="http://www.hmmer.org" ext-link-type="uri">http://www.hmmer.org</ext-link></p></fn>
<fn id="fn0003"><p><sup>3</sup><ext-link xlink:href="https://paulstothard.github.io/cgview" ext-link-type="uri">https://paulstothard.github.io/cgview</ext-link></p></fn>
<fn id="fn0004"><p><sup>4</sup><ext-link xlink:href="http://www.chiplot.online" ext-link-type="uri">http://www.chiplot.online</ext-link></p></fn>
<fn id="fn0005"><p><sup>5</sup><ext-link xlink:href="https://biotransformer.ca" ext-link-type="uri">https://biotransformer.ca</ext-link></p></fn>
</fn-group>
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