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<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
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<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-id pub-id-type="doi">10.3389/fmicb.2024.1352778</article-id>
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<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Review</subject>
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</subj-group>
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<title-group>
<article-title>Microbiota changes: the unseen players in cervical cancer progression</article-title>
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<name><surname>Fong Amaris</surname> <given-names>W. M.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
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<contrib contrib-type="author">
<name><surname>Assump&#x00E7;&#x00E3;o</surname> <given-names>Paulo Pimentel de</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
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<name><surname>Valadares</surname> <given-names>Leonardo Jacomo</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<name><surname>Moreira</surname> <given-names>Fabiano Cordeiro</given-names></name>
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<aff id="aff1"><sup>1</sup><institution>Instituto de Ci&#x00EA;ncias Biol&#x00F3;gicas, Universidade Federal do Par&#x00E1;</institution>, <addr-line>Bel&#x00E9;m</addr-line>, <country>Brazil</country></aff>
<aff id="aff2"><sup>2</sup><institution>N&#x00FA;cleo de Pesquisas em Oncologia, Universidade Federal do Par&#x00E1;</institution>, <addr-line>Bel&#x00E9;m</addr-line>, <country>Brazil</country></aff>
<aff id="aff3"><sup>3</sup><institution>Hospital Universit&#x00E1;rio Jo&#x00E3;o de Barros Barreto, Universidade Federal do Par&#x00E1;</institution>, <addr-line>Bel&#x00E9;m</addr-line>, <country>Brazil</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0001">
<p>Edited by: Svetlana Khaiboullina, University of Nevada, Reno, United States</p>
</fn>
<fn fn-type="edited-by" id="fn0002">
<p>Reviewed by: Izabela Korona-Glowniak, Medical University of Lublin, Poland; Ant&#x00F3;nio Machado, Universidad San Francisco de Quito, Ecuador</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: W. M. Fong Amaris, <email>wendy.amaris@icb.ufpa.br</email></corresp>
<corresp id="c002">Fabiano Cordeiro Moreira, <email>fcmoreira@ufpa.br</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>08</day>
<month>02</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1352778</elocation-id>
<history>
<date date-type="received">
<day>08</day>
<month>12</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>16</day>
<month>01</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Fong Amaris, Assump&#x00E7;&#x00E3;o, Valadares and Moreira.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Fong Amaris, Assump&#x00E7;&#x00E3;o, Valadares and Moreira</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Cervical cancer ranks among the most prevalent cancers globally with high-risk human papillomaviruses implicated in nearly 99% of cases. However, hidden players such as changes in the microbiota are now being examined as potential markers in the progression of this disease. Researchers suggest that changes in the vaginal microbiota might correlate with cervical cancer. This review provides a comprehensive look at the microbiota changes linked with the advancement of cervical cancer. It also scrutinizes the databases from past studies on the microbiota during healthy and cancerous stages, drawing connections between prior findings concerning the role of the microbiota in the progression of cervical cancer. Preliminary findings identify <italic>Fusobacterium</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Campylobacter</italic> spp., and <italic>Haemophilus</italic> spp., as potential biomarkers for cervical cancer progression. <italic>Alloscardovia</italic> spp., <italic>Eubacterium</italic> spp., and <italic>Mycoplasma</italic> spp. were identified as potential biomarkers for HPVs (+), while <italic>Methylobacterium</italic> spp. may be indicative of HPV (&#x2212;). However, the study&#x2019;s limitations, including potential biases and methodological constraints, underscore the need for further research to validate these findings and delve deeper into the microbiota&#x2019;s role in HPV development. Despite these limitations, the review provides valuable insights into microbiota trends during cervical cancer progression, offering direction for future research. The review summarizes key findings from previous studies on microbiota during healthy and cancerous stages, as well as other conditions such as CIN, SIL, HPV (+), and HPV (&#x2212;), indicating a promising area for further investigation. The consistent presence of HPV across all reported cervical abnormalities, along with the identification of distinct bacterial genera between cancerous and control samples, suggests a potential link that merits further exploration. In conclusion, a more profound understanding of the microbial landscape could elucidate the pathogenesis of cervical diseases and inform future strategies for diagnosis, prevention, and treatment.</p>
</abstract>
<kwd-group>
<kwd>microbiota changes</kwd>
<kwd>cervical cancer</kwd>
<kwd>progression</kwd>
<kwd>biomarkers</kwd>
<kwd>vaginal microbiota</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="100"/>
<page-count count="17"/>
<word-count count="14728"/>
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<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Infectious Agents and Disease</meta-value>
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</front>
<body>
<sec sec-type="intro" id="sec1">
<label>1</label>
<title>Introduction</title>
<p>Cervical cancer (CAN) is a significant health concern for women worldwide, ranking as one of the most common cancers (<xref ref-type="bibr" rid="ref6">Arbyn et al., 2020</xref>; <xref ref-type="bibr" rid="ref90">WHO, 2020</xref>; <xref ref-type="bibr" rid="ref5">Aobchey et al., 2022</xref>; <xref ref-type="bibr" rid="ref86">Wang et al., 2022</xref>). As per the World Health Organization (WHO), in 2018, approximately 570,000 women were diagnosed with cervical cancer globally, resulting in roughly 311,000 fatalities (<xref ref-type="bibr" rid="ref90">WHO, 2020</xref>; <xref ref-type="bibr" rid="ref91">Wickramasinghe et al., 2021</xref>; <xref ref-type="bibr" rid="ref96">Zhang et al., 2022</xref>). Furthermore, the WHO projected in 2020 that the annual incidence of new cases of this disease could rise from 570,000 to 700,000 between 2018 and 2030 (<xref ref-type="bibr" rid="ref90">WHO, 2020</xref>).</p>
<p>The prevalence of this disease is notably higher in low-to middle-income countries, nonetheless, it affects women globally. The number of deaths in low and middle-income countries accounted for an estimated 90% of the 311,000 global fatalities. Consequently, age-standardized incidence rates fluctuate from 75 per 100,000 women in the highest-risk countries to fewer than 10 per 100,000 women in the lowest-risk countries (<xref ref-type="bibr" rid="ref32">Bray et al., 2018</xref>; <xref ref-type="bibr" rid="ref90">WHO, 2020</xref>). This disparity underscores the urgency to address cervical cancer, particularly in regions with higher risk factors.</p>
<p>Human papillomavirus (HPV) infection is pivotal in the development of cervical cancer, with nearly 99% of cases associated with high-risk HPV strains (<xref ref-type="bibr" rid="ref90">WHO, 2020</xref>; <xref ref-type="bibr" rid="ref37">Jiang and Wang, 2022</xref>). However, other contributing factors such as tobacco use, immunosuppression, malnutrition, and low socioeconomic status are also implicated (<xref ref-type="bibr" rid="ref1">ACCP, 2004</xref>; <xref ref-type="bibr" rid="ref31">Ghebre et al., 2017</xref>; <xref ref-type="bibr" rid="ref95">Zhang et al., 2020</xref>). Persistent infection with various types of HPV is acknowledged as a contributing factor in the progression of cervical intraepithelial neoplasia (CIN) and invasive cervical cancer (ICC). Nevertheless, the complete involvement of HPV in the entire tumorigenic process remains a topic of ongoing debate due to insufficient data (<xref ref-type="bibr" rid="ref58">Mu&#x00F1;oz, 2000</xref>; <xref ref-type="bibr" rid="ref19">Castellsagu&#x00E9;, 2008</xref>; <xref ref-type="bibr" rid="ref88">Wheeler, 2013</xref>; <xref ref-type="bibr" rid="ref43">Kori and Arga, 2018</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>).</p>
<p>Recent literature posits an intriguing hypothesis: microorganisms may play a significant role in malignancies. This theory suggests that there could be unexplored mechanisms during infections where these microscopic entities take a leading role (<xref ref-type="bibr" rid="ref63">Parkin, 2006</xref>; <xref ref-type="bibr" rid="ref33">Godoy-Vitorino et al., 2018</xref>).</p>
<p>This perspective necessitates a broader understanding of the microbial world and its potential influence on disease processes. The interplay between HPV and other microorganisms could add another layer of complexity to the etiology of cervical cancer, warranting further investigation. This new viewpoint not only challenges our current knowledge but also paves the way for innovative research directions in cervical cancer pathogenesis.</p>
<p>The detection of microbial diversity, first accomplished in 1677 by Van Leeuwenhoek through microscopic observation, has evolved significantly over time (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>). In cervical cancer diagnostics, the Papanicolaou smear, a microscopic biopsy image analysis, has traditionally been the primary modality (<xref ref-type="bibr" rid="ref51">Long et al., 2017</xref>; <xref ref-type="bibr" rid="ref43">Kori and Arga, 2018</xref>). However, its reliability is debatable due to its dependence on human interpretation (<xref ref-type="bibr" rid="ref51">Long et al., 2017</xref>). Despite several alternate cervical cancer screening methods proposed over the years such as cytological testing alone, standalone hrHPV testing, and cytological + hrHPV combination testing (co-testing) (<xref ref-type="bibr" rid="ref22">Curry et al., 2018</xref>; <xref ref-type="bibr" rid="ref39">Kim et al., 2018</xref>; <xref ref-type="bibr" rid="ref81">Terasawa et al., 2022</xref>), the 5&#x2009;years survival rate remains a dismal 66% (<xref ref-type="bibr" rid="ref51">Long et al., 2017</xref>; <xref ref-type="bibr" rid="ref11">Basic et al., 2021</xref>; <xref ref-type="bibr" rid="ref68">Qu et al., 2021</xref>; <xref ref-type="bibr" rid="ref36">Hou et al., 2022</xref>).</p>
<p>Treatment strategies for cervical cancer, such as surgical resection, radiotherapy, and chemotherapy, are frequently challenged by tumor metastasis and recurrence, complicating disease management (<xref ref-type="bibr" rid="ref53">Mallmann and Mallmann, 2016</xref>; <xref ref-type="bibr" rid="ref85">Vordermark, 2016</xref>; <xref ref-type="bibr" rid="ref42">Koh et al., 2019</xref>; <xref ref-type="bibr" rid="ref47">Li et al., 2021</xref>). Further, patients often suffer from side effects related to these treatments. This highlights a significant problem: the urgent need for novel, reliable diagnostic methods for cervical cancer that can improve early detection and thereby enhance survival rates (<xref ref-type="bibr" rid="ref100">Zhu et al., 2016</xref>; <xref ref-type="bibr" rid="ref51">Long et al., 2017</xref>; <xref ref-type="bibr" rid="ref49">Liu et al., 2018</xref>; <xref ref-type="bibr" rid="ref42">Koh et al., 2019</xref>; <xref ref-type="bibr" rid="ref35">Han et al., 2021</xref>).</p>
<p>The exploration of microbial diversity has been significantly enhanced by advancements in culture technologies. However, due to inherent challenges associated with laboratory culturing procedures, our understanding is not yet exhaustive (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>). In response to this, techniques centered around molecular sample analysis have emerged within the field of omics, paving the way for a more detailed investigation of microbial diversity (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>).</p>
<p>The advent of laboratory automation has facilitated the deployment of high-throughput-omics technologies. These sophisticated methodologies enable an in-depth characterization of samples collected from both patients and healthy individuals, thereby expanding our knowledge of microbial ecosystems. One such transformative innovation is next-generation sequencing (NGS). This technique has unlocked the potential to delineate the intricate complexity of microbial communities and human microbiota, providing valuable insights into the influence of the microbiome on human health and disease pathologies (<xref ref-type="bibr" rid="ref65">Peterson et al., 2009</xref>).</p>
<p>Among the various omic approaches, metagenomics stands out for its ability to divulge specific information about the genomes and genes within a microbial community. It serves as an essential first step in microbiome studies (<xref ref-type="bibr" rid="ref54">Marchesi and Ravel, 2015</xref>; <xref ref-type="bibr" rid="ref2">Aguiar-Pulido et al., 2016</xref>). The primary goal of metagenomics is to determine the taxonomic profile of a microbial community, typically involving NGS post-DNA extraction from samples, followed by assembly or mapping to a reference database, and subsequent annotation (<xref ref-type="bibr" rid="ref54">Marchesi and Ravel, 2015</xref>; <xref ref-type="bibr" rid="ref2">Aguiar-Pulido et al., 2016</xref>). This method has become particularly prevalent in investigating the microbial composition within the vaginal environment.</p>
<p>The female genital tract serves as a critical ecological niche for human microbiota (<xref ref-type="bibr" rid="ref30">Gao et al., 2013</xref>), housing <italic>Lactobacillus</italic> species that contribute to metabolic processes, immunological responses, and overall gynecological health (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>). Known for probiotic benefits, <italic>Lactobacillus</italic> species help combat vaginal dysbiosis (<xref ref-type="bibr" rid="ref52">Machado et al., 2022</xref>; <xref ref-type="bibr" rid="ref61">Pacha-Herrera et al., 2022</xref>; <xref ref-type="bibr" rid="ref71">Rodr&#x00ED;guez-Arias et al., 2022</xref>). Detailed insights follow in this review&#x2019;s upcoming sections. There is an emerging body of literature suggesting that alterations in the vaginal microbiota may be linked to cervical cancer (<xref ref-type="bibr" rid="ref41">Klein et al., 2020b</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>). Furthermore, numerous studies propose that the vaginal microbiota could play a crucial role in defending women against infections such as HPV, vulvovaginal candidiasis, and other sexually transmitted diseases (<xref ref-type="bibr" rid="ref50">Liu et al., 2013</xref>; <xref ref-type="bibr" rid="ref46">Lewis et al., 2017</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>). As such, the cervical microbiota could potentially serve as a biomarker for assessing the risk of cancer progression (<xref ref-type="bibr" rid="ref56">Mitra et al., 2016a</xref>,<xref ref-type="bibr" rid="ref57">b</xref>; <xref ref-type="bibr" rid="ref23">Curty et al., 2019</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>).</p>
<p>The exploration of the human microbiome has been an exciting journey, with techniques evolving from 16S sequencing (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref25">Dareng et al., 2016</xref>; <xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>; <xref ref-type="bibr" rid="ref41">Klein et al., 2020b</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>), PCR (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>), and microarray (<xref ref-type="bibr" rid="ref14">Borgdorff et al., 2014</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>) to cutting-edge methods like RNA-seq (<xref ref-type="bibr" rid="ref43">Kori and Arga, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref20">Chang et al., 2021</xref>) and Whole Genome Shotgun (WGS) (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>). A significant milestone in this journey was the commencement of the Human Microbiome Project (HMP) in 2008, which aimed to map the microbial landscape across various body parts, including the lower genital tract of healthy individuals (<xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>). From this wealth of research, a startling revelation has emerged: approximately 20% of all fatal cancers are microbially induced (<xref ref-type="bibr" rid="ref33">Godoy-Vitorino et al., 2018</xref>). Moreover, numerous studies have drawn significant correlations between alterations in the microbiome and cancer phenotypes (<xref ref-type="bibr" rid="ref27">Elinav et al., 2019</xref>; <xref ref-type="bibr" rid="ref67">Poore et al., 2020</xref>; <xref ref-type="bibr" rid="ref10">Banavar et al., 2021</xref>). This underlines the potential of the microbiota as a treasure trove of biomarkers that could revolutionize clinical diagnostics and disease management.</p>
<p>This review is an ambitious endeavor to chart the intricate relationship between the microbiota and cervical cancer progression. We delve into the diverse universe of microorganisms implicated in cervicovaginal dysbiosis, providing an authoritative synthesis of prior research on both CONTROL (healthy) samples and CAN stage. Our goal is to offer an updated perspective on the role of microbiota in cervical cancer progression, thereby filling a crucial gap in the existing literature.</p>
<p>While our analysis provides a comprehensive overview based on the data available at the time of our research, it&#x2019;s crucial to recognize the fluidity and rapid evolution of scientific knowledge. As such, newer developments may not have been captured. This underscores the need for ongoing research in this field. Therefore, we strongly advocate for broader studies using metagenomics and metatranscriptomics, as these techniques hold immense promise in untangling the intricate role of microbiota in cervical cancer progression. By deepening our understanding of this critical issue, we can pave the way for innovative therapeutic interventions, heralding a new era in women&#x2019;s health management.</p>
</sec>
<sec id="sec2">
<label>2</label>
<title>Cervical cancer and HPV</title>
<p>According to the World Health Organization (<xref ref-type="bibr" rid="ref90">WHO, 2020</xref>), the principal instigator of cervical pre-cancer and squamous cervical cancer is the asymptomatic, persistent or chronic infection with one or more high-risk HPV types. While over 100 HPV types have been identified, only a fraction are associated with cervical cancer. Indeed, two specific types, HPV 16 and 18, are implicated in approximately 70% of all reported cervical cancer cases (<xref ref-type="bibr" rid="ref62">Pappa et al., 2018</xref>; <xref ref-type="bibr" rid="ref21">Cohen et al., 2019</xref>; <xref ref-type="bibr" rid="ref48">Lin et al., 2019</xref>; <xref ref-type="bibr" rid="ref90">WHO, 2020</xref>). Other high-risk HPV types, such as 31, 33, 45, and 58, are less frequently linked to cervical cancer, with prevalence varying by geographic location. Additionally, low-risk HPV types 6 and 11, although not contributing to cervical cancer, are responsible for most genital warts or condylomas (<xref ref-type="bibr" rid="ref89">WHO, 2014</xref>).</p>
<p>The role of genetic variation in cervical cancer has been underscored by genome-wide association studies (GWAS). <xref ref-type="bibr" rid="ref48">Lin et al. (2019)</xref>, reported that cervical cancer harbors genetic variations across multiple susceptibility loci (<xref ref-type="bibr" rid="ref9">Bahrami et al., 2018</xref>; <xref ref-type="bibr" rid="ref48">Lin et al., 2019</xref>). The viral oncoproteins E6 and E7 appear to play a pivotal role in HPV-infected cervical cancers. Integration of the viral genome into the host DNA results in the upregulation of E6 and E7, leading to the deregulation of key proteins within cellular signaling pathways, including the inhibition of two vital tumor suppressor proteins, p53 and pRb (<xref ref-type="bibr" rid="ref60">Oyervides-Mu&#x00F1;oz et al., 2018</xref>; <xref ref-type="bibr" rid="ref48">Lin et al., 2019</xref>). The combined effect of E6 and E7 viral proteins triggers the process of immortalization in HPV-infected cells. This precedes the malignant metamorphosis of these cells (<xref ref-type="bibr" rid="ref24">Da Silva et al., 2021</xref>).</p>
<p>Furthermore, <xref ref-type="bibr" rid="ref45">Lau et al. (2015)</xref> revealed that DNA tumor virus oncogenes, including E7, can bind to and suppress the cGAS-STING DNA-sensing pathway (<xref ref-type="bibr" rid="ref45">Lau et al., 2015</xref>; <xref ref-type="bibr" rid="ref48">Lin et al., 2019</xref>). However, it&#x2019;s worth noting that not all integrations necessarily rely on the expression of the E6 and E7 oncogenes (<xref ref-type="bibr" rid="ref34">Groves and Coleman, 2015</xref>; <xref ref-type="bibr" rid="ref48">Lin et al., 2019</xref>). In addition to these findings, several reports have identified driver mutations in cervical cancer, such as PIK3CA (phosphatidylinositide 3-kinases catalytic subunit &#x03B1;), a central protein in the PI3K pathway, KRAS (Kirsten rat sarcoma viral oncogene homolog), and EGFR (epidermal growth factor receptor) (<xref ref-type="bibr" rid="ref48">Lin et al., 2019</xref>).</p>
</sec>
<sec id="sec3">
<label>3</label>
<title>Vaginal microbiota</title>
<p>The vaginal microbiota is a critical component of women&#x2019;s health (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>). This complex ecosystem, which operates in harmony with the host, provides protective mechanisms against dysbiosis and infection (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>). The function of the vaginal mucosa as a barrier against pathogens is facilitated by the interaction of epithelial cells, the immune system, and various microorganisms (<xref ref-type="bibr" rid="ref13">Borgdorff et al., 2016</xref>; <xref ref-type="bibr" rid="ref79">Taddei et al., 2018</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>).</p>
<p>Dominating this ecosystem are <italic>Lactobacillus</italic> species, which play a significant role in maintaining vaginal health. By producing lactic acid, these bacteria sustain a low pH environment in the cervicovaginal setting, thereby preventing the colonization of harmful opportunistic pathogens, preserving the cervical epithelial barrier, and impeding mucin degradation (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref73">Salinas et al., 2020</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>).</p>
<p>However, the composition of the vaginal microbiota is not static. It can be influenced by numerous factors such as genetics, diet, lifestyle, hygiene practices, ethnicity, reproductive age, infections, male factor, usage of antibiotics and contraceptives, sexual activity, physiological status, pregnancy and estrogen levels (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>; <xref ref-type="bibr" rid="ref12">Baud et al., 2023</xref>).</p>
<p>Thanks to new molecular techniques, over 50 microbial species have been identified within the vaginal microbiota, with <italic>Lactobacillus</italic> spp. being the most prevalent (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>). Among them, <italic>L. crispatus</italic>, <italic>L. gasseri</italic>, <italic>L. inners</italic>, and <italic>L. jensenii</italic> are the most commonly found (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>).</p>
<p>Further research about the vaginal microbiota in healthy women from different ethnic groups (White, Black, Hispanic and Asian) by <xref ref-type="bibr" rid="ref70">Ravel et al. (2011)</xref> led to the classification of vaginal bacterial communities into five distinct &#x201C;community state types&#x201D; (CST). In this classification, <italic>Lactobacillus</italic> species dominated groups I, II, III, and V. Group IV, on the other hand, was characterized by a diverse set of anaerobic bacteria, including bacteria like <italic>Prevotella</italic> spp., <italic>Streptococcus</italic> spp., <italic>Dialister</italic> spp., <italic>Fannyhessea</italic> spp. (previously known as <italic>Atopobium</italic>), <italic>Gardnerella</italic> spp., <italic>Megasphaera</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Sneathia</italic> spp., <italic>Eggerthella</italic> spp., <italic>Aerococcus</italic> spp., <italic>Finegoldia</italic> spp., and <italic>Mobiluncus</italic> spp. These findings were consistent with previous research employing 16S rRNA genes (<xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref98">Zhou et al., 2010</xref>).</p>
<p>Despite the diversity in bacterial species, a commonality across all CST groups was the presence of lactic acid-producing bacteria, suggesting a conserved function throughout these communities.</p>
</sec>
<sec id="sec4">
<label>4</label>
<title>Vaginal microbiota and cervical cancer</title>
<p>The human body is a dynamic ecosystem for a myriad of microbes, collectively known as the microbiome. This microbiome plays a pivotal role in maintaining normal bodily functions, including immune modulation and overall protection (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>). Over time, evidence has emerged highlighting the connection between the microbiome, inflammation, and the development and progression of cancer. According to <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref> and <xref ref-type="bibr" rid="ref87">Wei et al. (2021)</xref>, disturbances in microbial homeostasis can trigger a cascade of immune responses. Chronic inflammation, a byproduct of such disruptions, is a known carcinogenic factor, heightening the host&#x2019;s susceptibility to cancer (<xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>).</p>
<p>Given the profound implications of the microbiome on health and disease, specifically cervical cancer, advanced research is warranted. The advent of laboratory automation and high-throughput technologies has revolutionized our understanding of microbiome diversity and its potential impacts (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>). There is mounting scientific evidence pointing towards a correlation between microbiota and cervical cancer (<xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>).</p>
<p>Cervicitis, or inflammation of the cervix, can stem from various conditions, including microbial infections. Chronic cervicitis has been linked to the development of cervical cancer. Pelvic inflammatory disease (PID) in women is typically triggered by ascending bacterial infections from the cervix to the uterus and fallopian tubes. Bacterial vaginosis (BV), a condition characterized by dysbiosis of cervicovaginal bacteria, is also associated with cervicitis. Notably, the microenvironment fostered by BV is reported to facilitate persistent HPV infection, a known precursor to cervical cancer (<xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>).</p>
<p>Various microorganisms, including <italic>Fusobacterium</italic> spp., <italic>Mycoplasma genitalium</italic>, <italic>Chlamydia trachomatis</italic>, <italic>Sneathia</italic> spp., <italic>Anaerococcus</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Prevotella</italic> spp., <italic>Fannyhessea</italic> spp., <italic>Streptococcus</italic> spp., <italic>Dialister</italic> spp., <italic>Megasphaera</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Finegoldia</italic> spp., <italic>Mobiluncus</italic> spp. and <italic>Lactobacillus iners</italic> have been implicated in the onset of cervical cancer. Interestingly, <italic>L. iners</italic> is found more frequently in infected women compared to their healthy counterparts. <xref ref-type="table" rid="tab1">Table 1</xref> provides a detailed overview of these microorganisms and their association with cervical cancer.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Association between microorganisms and cervical cancer.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Microorganisms</th>
<th align="left" valign="top">Relationship with cervical cancer</th>
<th align="left" valign="top">References</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" rowspan="6"><italic>Fusobacterium</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Fusobacterium</italic> spp., inclusive of <italic>Sneathia</italic> spp., is implicated in creating an immunosuppressive microenvironment characterized by anti-inflammatory cytokines.</p>
</list-item>
<list-item>
<p>It plays a significant role in the development of cervical cancer.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Identified as a microbial biomarker for HPV infection.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Sneathia</italic> spp., from the <italic>Fusobacterium</italic> genus, has associations with HPV, cervical intraepithelial neoplasia (CIN), and cervical cancer (CAN).</p>
</list-item>
<list-item>
<p>Produces FadA, a virulence factor disrupting the cervical cancer signaling pathway.</p>
</list-item>
<list-item>
<p>Overexpression of FadA gene is observed in CAN patients.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>, <xref ref-type="bibr" rid="ref57">Mitra et al. (2016b)</xref> and <xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Increased presence of <italic>Fusobacterium</italic> spp., may lead to local immunosuppression, promoting HPV immune evasion and disease progression.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref57">Mitra et al. (2016b)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Distinctly higher levels of <italic>Fusobacterium</italic> spp. in the CAN group.</p>
</list-item>
<list-item>
<p>Identified as a marker for both CAN and high-grade squamous intraepithelial lesions (HSIL) groups.</p>
</list-item>
<list-item>
<p>May contribute to CAN pathogenesis through chronic inflammation, antiapoptotic activity, or production of carcinogenic substances.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref59">Norenhag et al. (2020)</xref>, <xref ref-type="bibr" rid="ref75">Sims et al. (2021)</xref> and <xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>The presence of <italic>F. necrophorum</italic> is specifically reported in CAN cases</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>, <xref ref-type="bibr" rid="ref77">So et al. (2020)</xref> and <xref ref-type="bibr" rid="ref18">Castanheira et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Mycoplasma genitalium</italic>
</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>M. genitalium</italic> is an independent pathogenic microorganism causing a series of intracellular infections.</p>
</list-item>
<list-item>
<p>It disrupts tight junctions from epithelial cells, which can lead to bacterial vaginosis (BV) and cervicitis.</p>
</list-item>
<list-item>
<p>It increases the incidence of cervical lesions.</p>
</list-item>
<list-item>
<p>Some studies suggest that <italic>M. genitalium</italic> can induce chromosomal damage in cells, potentially leading to the formation of cancerous cells.</p>
</list-item>
<list-item>
<p>Both <italic>M. genitalium</italic> and <italic>M. hominis</italic> are common mycoplasmas found in female tract infections.</p>
</list-item>
<list-item>
<p>These mycoplasmas have been identified in patients with cervicitis and BV.</p>
</list-item>
<list-item>
<p>There is a documented association between <italic>M. genitalium</italic> and BV.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref40">Klein et al. (2020a)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top" rowspan="3">
<italic>Chlamydia trachomatis</italic>
</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>C. trachomatis</italic> has been identified as a co-factor for cervical cancer (CAN) development in epidemiologic studies.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>This microorganism can damage the cervical mucosal barrier, facilitating high-risk HPV (hr-HPV) infection of the cervical epithelium.</p>
</list-item>
<list-item>
<p>It may induce chronic inflammation and influence local and cellular immunity of the cervix, inhibiting HPV clearance.</p>
</list-item>
<list-item>
<p>The persistence of HPV infection, facilitated by <italic>C. trachomatis</italic>, could lead to cervical cancer.</p>
</list-item>
<list-item>
<p>Some research suggests that non-bacterial components might affect CAN progression, but there is a lack of extensive studies on this topic.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>It has been associated with cervicitis, the persistence of HPV infection, and BV.</p>
</list-item>
<list-item>
<p>Meta-analyses have reported a positive correlation between cervical HPV infection and BV.</p>
</list-item>
<list-item>
<p>HPV is considered a primary factor responsible for CAN development.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018</xref>) and <xref ref-type="bibr" rid="ref40">Klein et al. (2020a)</xref></td>
</tr>
<tr>
<td align="left" valign="top" rowspan="6"><italic>Sneathia</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Sneathia</italic> spp. is a potential microbiological marker of HPV infection.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref57">Mitra et al. (2016b)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>It has a significant association with Bacterial Vaginosis (BV) infection.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref57">Mitra et al. (2016b)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Reports indicate its presence in cervical intraepithelial neoplasia (CIN) stages 1, 2, and 3.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Identified as a marker genus of high-grade squamous intraepithelial lesions (HSIL) group.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>S. sanguinegens</italic> is associated with high-grade CIN, whereas <italic>S. amnii</italic> (previously named <italic>Leptotrichia amnionii</italic>) has been linked with cervical cancer, but not HPV infection or CIN.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref57">Mitra et al. (2016b)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>A documented correlation exists between colonization with <italic>S. amnii</italic> and cervical cancer in HPV-positive subjects.</p>
</list-item>
<list-item>
<p><italic>S. amnii</italic> has also been reported as a reliable predictor of BV.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Gardnerella</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Gardnerella</italic> spp., particularly <italic>G. vaginalis</italic>, is proposed as a molecular marker due to its role in biofilm formation, which may contribute to the persistence of HPV infection.</p>
</list-item>
<list-item>
<p><italic>Gardnerella</italic> spp. and <italic>Streptococcus</italic> spp. may serve as biomarkers to potentially distinguish invasive cervical cancer (ICC) from cervical intraepithelial neoplasia (CIN), indicating possible disease progression.</p>
</list-item>
<list-item>
<p><italic>Gardnerella</italic> spp. has been associated with bacterial vaginosis (BV) and HPV infection.</p>
</list-item>
<list-item>
<p>It is a representative genus in the CIN group and is reported as a biomarker to differentiate patients with CIN from healthy individuals.</p>
</list-item>
<list-item>
<p>The presence of <italic>Gardnerella</italic> spp. has been reported in patients from high-grade squamous intraepithelial lesions (HSIL + HPV +) and Low-grade squamous intraepithelial lesions (LSIL) groups.</p>
</list-item>
<list-item>
<p>An enrichment of anaerobic bacteria like <italic>G. vaginalis</italic> has been described in women with CIN and cervical cancer (CAN). This bacterium, a gram-variable facultative anaerobe, becomes more abundant during BV.</p>
</list-item>
<list-item>
<p><italic>G. vaginalis</italic> has been significantly associated with the risk for HSIL, high-grade CIN, and CAN. It was identified as a high risk for developing CIN2, CIN3, and CAN.</p>
</list-item>
<list-item>
<p>High levels of <italic>Gardnerella</italic> spp. are common among women persistently infected with hr-HPV for 1&#x2009;year. Specifically, <italic>G. vaginalis</italic> has been associated with CIN.</p>
</list-item>
<list-item>
<p>Another study reported a higher prevalence of <italic>G. vaginalis</italic> in HPV-negative women with non-cervical lesions (NCL), but its presence decreased across the HPV-positive, SIL, and CAN groups.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>, <xref ref-type="bibr" rid="ref57">Mitra et al. (2016b)</xref>, <xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref>, <xref ref-type="bibr" rid="ref40">Klein et al. (2020a)</xref>, <xref ref-type="bibr" rid="ref59">Norenhag et al. (2020)</xref>, <xref ref-type="bibr" rid="ref18">Castanheira et al. (2021)</xref>, <xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Dialister</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Dialister</italic> spp., along with <italic>Prevotella</italic> spp., has been reported as marker genera of the cervical cancer (CAN) group. These are opportunistic pathogens whose activities are influenced by or influence <italic>Lactobacillus</italic> spp.</p>
</list-item>
<list-item>
<p><italic>D. invisus</italic>, a Gram-negative coccobacillus, has been linked to new HPV-type infections within a year in women with typical cytological results.</p>
</list-item>
<list-item>
<p>Notably, <italic>D. invisus</italic> has been significantly associated with high-grade squamous intraepithelial neoplasia and an increased risk of CAN</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref> and <xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Eggerthella</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Eggerthella</italic> spp. has been mentioned only once in relation to cervical cancer.</p>
</list-item>
<list-item>
<p>There is no available information that directly associates or disassociates it with cervical cancer.</p>
</list-item>
<list-item>
<p>It is included in the IV CST (community state type), a classification system for vaginal microbial communities.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref70">Ravel et al. (2011)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Prevotella</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>The abundance of <italic>Prevotella</italic> spp. is associated with HPV persistence and is inversely related to the quantity of <italic>Lactobacillus</italic>. This bacterium may cause infections like bacterial vaginosis (BV) and has been linked with HPV persistence. Notably, <italic>P. bivia</italic>, <italic>P. amnii</italic>, and <italic>P. timonensis</italic> have been reported in HPV positive samples.</p>
</list-item>
<list-item>
<p><italic>Prevotella</italic> spp. and <italic>Lactobacillus</italic> spp. reportedly play an antagonistic role in the progression of squamous intraepithelial lesions (SIL) and cervical cancer (CAN) through NLRs signaling and other pathways. They are reported as marker genera of the CAN group. It&#x2019;s speculated that these bacteria might drive chronic inflammation and antiapoptotic activity.</p>
</list-item>
<list-item>
<p><italic>Prevotella</italic> spp. is abundant in the cervical intraepithelial neoplasia (CIN) group. Furthermore, three potential biomarkers have been identified: <italic>Lactobacillus</italic> spp., <italic>Gardnerella</italic> spp., and <italic>Prevotella</italic> spp., which can robustly predict and distinguish patients with CIN from healthy individuals.</p>
</list-item>
<list-item>
<p>Specifically, <italic>P. buccalis</italic> and <italic>P. timonensis</italic> have been significantly associated with the risk for high-grade squamous intraepithelial lesions (HSIL) and CAN. These species have been reported in the CIN1 group, while <italic>P. disiens</italic> has been reported in the CIN2 or CIN3 groups.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref3">Amabebe and Anumba (2018)</xref>, <xref ref-type="bibr" rid="ref77">So et al. (2020)</xref> and <xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Fannyhessea</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>A high abundance of <italic>Fannyhessea</italic> spp. in the cervix vaginal microflora may serve as a critical marker for cervical lesions.</p>
</list-item>
<list-item>
<p>The dominance of <italic>A. vaginae</italic>, similar to <italic>G. vaginalis</italic>, is particularly noted in cases of bacterial vaginosis and significantly contributes to the risk of developing cervical neoplasia.</p>
</list-item>
<list-item>
<p><italic>F. vaginae</italic> has been reported in cases of cervical intraepithelial neoplasia 2 or 3 (CIN2 or CIN3). Additionally, infection with this bacterium is significantly associated with the risk of developing CIN2, CIN3, and cervical cancer (CAN).</p>
</list-item>
<list-item>
<p>Both <italic>G. vaginalis</italic> and <italic>F. vaginae</italic> have been proposed as molecular markers due to their ability to form a biofilm that may contribute to viral persistence.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref> and <xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Streptococcus</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Streptococcus</italic> spp. species have been related to bacterial vaginosis (BV). They have also been identified in cases of high-grade squamous intraepithelial lesion (HSIL), low-grade squamous intraepithelial lesion (LSIL), and normal controls.</p>
</list-item>
<list-item>
<p>Related to aerobic vaginitis (AV), another factor possibly related to CIN.</p>
</list-item>
<list-item>
<p>-<italic>Streptococcus</italic> spp. has been reported as a representative genus in the cervical cancer (CAN) group. A study suggested that it could serve as a potential biomarker for distinguishing CAN, possibly through the activation of multiple inflammatory cytokines, and may affect human vaginal and cervical epithelial cells.</p>
</list-item>
<list-item>
<p><italic>Gardnerella</italic> spp., <italic>Streptococcus</italic> spp., <italic>Finegoldia</italic> spp., <italic>Anaerococcus</italic> spp., and <italic>Lactobacillus</italic> spp. are considered the most impactful factors to differentiate CAN from cervical intraepithelial neoplasia (CIN). However, when it comes to distinguishing invasive cervical carcinoma (ICC) from CIN, <italic>Gardnerella</italic> spp. or <italic>Streptococcus</italic> spp. have been reported as potential biomarkers.</p>
</list-item>
<list-item>
<p>Specifically, <italic>S. dysgalactiae</italic> has been reported in cases of CAN.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref>, <xref ref-type="bibr" rid="ref4">Amabebe and Anumba (2020)</xref>, <xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>, <xref ref-type="bibr" rid="ref66">Plisko et al. (2021)</xref> and <xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Mobiluncus</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Mobiluncus</italic> spp. has been reported as one of the organisms causing bacterial vaginosis (BV). This condition occurs when there&#x2019;s an imbalance in the natural bacteria levels in the vagina, leading to discomfort and pain.</p>
</list-item>
<list-item>
<p>There are mainly two species of <italic>Mobiluncus</italic> spp. that have been identified: <italic>M. mulieris</italic> and <italic>M. curtisii</italic>.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref56">Mitra et al. (2016a)</xref>, <xref ref-type="bibr" rid="ref3">Amabebe and Anumba (2018)</xref>, <xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref> and <xref ref-type="bibr" rid="ref40">Klein et al. (2020a)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Megasphaera</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Marker genera of the CAN (community state type anaerobe non-dominated) group.</p>
</list-item>
<list-item>
<p>Mentioned in relation with the SIL (squamous intraepithelial lesion) group, particularly noted for its relative abundance of <italic>M. elsdenii</italic> and presence in the CAN group.</p>
</list-item>
<list-item>
<p><italic>Sneathia</italic> spp., <italic>M. elsdenii</italic>, and <italic>Shuttleworthia satelles</italic> are most representative according to the SIL group.</p>
</list-item>
<list-item>
<p><italic>M. elsdenii</italic> was reported for the first time in women with SIL.</p>
</list-item>
<list-item>
<p><italic>Megasphaera</italic> spp. and <italic>Sneathia amnionii</italic> are considered predictors of bacterial vaginosis (BV).</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref> and <xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Peptoniphilus</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Reported as a marker genera of the CAN (community state type anaerobe non-dominated) group.</p>
</list-item>
<list-item>
<p>Part of the IV CST (community state type), a classification system for vaginal microbial communities.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref70">Ravel et al. (2011)</xref>, <xref ref-type="bibr" rid="ref77">So et al. (2020)</xref> and <xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Aerococcus</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>Aerococcus</italic> spp. has been reported in relation to HPV clearance in CONTROL samples.</p>
</list-item>
<list-item>
<p>It is included in the IV CST (community state type), a classification system for vaginal microbial communities.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref70">Ravel et al. (2011)</xref>
</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Finegoldia</italic> spp.</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Reported as a significant factor in distinguishing CAN (community state type anaerobe non-dominated) from CIN (cervical intraepithelial neoplasia).</p>
</list-item>
<list-item>
<p><italic>F. magna</italic> is associated with high-grade squamous intraepithelial neoplasia and CAN risk.</p>
</list-item>
<list-item>
<p>It has a significant relationship with the risk of developing CIN2 or CIN3, and CAN.</p>
</list-item>
<list-item>
<p><italic>F. magna</italic> typically appears on the skin and mucous membranes.</p>
</list-item>
<list-item>
<p>It is associated with vaginosis.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref> and <xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Lactobacillus jensenii</italic>
</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>Depletion of specific <italic>Lactobacilli</italic> species&#x2014;<italic>L. crispatus</italic>, <italic>L. gasseri</italic> or <italic>L. jensenii</italic>-is associated with a predisposition towards bacterial vaginosis and other proinflammatory states.</p>
</list-item>
<list-item>
<p>This depletion can lead to DNA cell damage and potentially carcinogenic changes.</p>
</list-item>
<list-item>
<p>In 20% of CAN (community state type anaerobe non-dominated) cases, there were low levels of <italic>L. jensenii</italic>, which were related to severe lesions.</p>
</list-item>
<list-item>
<p>Women with high-grade CIN (cervical intraepithelial neoplasia) had lower levels of <italic>L. jensenii</italic> than those with low-grade CIN.</p>
</list-item>
<list-item>
<p><italic>L. jensenii</italic> and <italic>L. vaginalis</italic> were found only in samples from women with NCL (no cervical lesion).</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>, <xref ref-type="bibr" rid="ref56">Mitra et al. (2016a)</xref>, <xref ref-type="bibr" rid="ref18">Castanheira et al. (2021)</xref> and <xref ref-type="bibr" rid="ref75">Sims et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Lactobacillus gasseri</italic>
</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>L. gasseri</italic> is reported to potentially be associated with the most rapid clearance of acute HPV infection.</p>
</list-item>
<list-item>
<p>It has been proposed as a potential therapeutic species for maintaining cervical health.</p>
</list-item>
<list-item>
<p>PCR-based techniques have shown that <italic>L. gasseri</italic> is negatively associated with <italic>L. iners</italic> and <italic>F. vaginae</italic> species, which often co-associate and are suggested to pose an intermediate and high risk for the development of CIN (cervical intraepithelial neoplasia).</p>
</list-item>
<list-item>
<p>Depletion of specific <italic>Lactobacilli</italic> species&#x2014;<italic>L. crispatus</italic>, <italic>L. gasseri</italic> or <italic>L. jensenii</italic>-is associated with a predisposition towards bacterial vaginosis and other proinflammatory states.</p>
</list-item>
<list-item>
<p>This depletion can lead to DNA cell damage and potentially carcinogenic changes.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref56">Mitra et al. (2016a)</xref>, <xref ref-type="bibr" rid="ref18">Castanheira et al. (2021)</xref> and <xref ref-type="bibr" rid="ref75">Sims et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Lactobacillus crispatus</italic>
</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p>The vaginal epithelial mucus layer&#x2019;s protective function is enhanced, and autophagy activity is observed when <italic>L. crispatus</italic> dominates the vaginal microbiota.</p>
</list-item>
<list-item>
<p>Vaginal microbiota dominated by <italic>L. crispatus</italic> is associated with a lower risk of HPV, CIN (cervical intraepithelial neoplasia), and CAN (community state type anaerobe non-dominated) infection.</p>
</list-item>
<list-item>
<p><italic>L. crispatus</italic> is related to maintaining the integrity of the protective mucosal surface layer and poses a lower risk of opportunistic bacterial and viral urogenital infections.</p>
</list-item>
<list-item>
<p>The presence of <italic>L. crispatus</italic> has been negatively correlated with CIN.</p>
</list-item>
<list-item>
<p>A marked decrease of <italic>L. crispatus</italic> was found in the CIN1, CIN2, CIN3, and CAN groups.</p>
</list-item>
<list-item>
<p><italic>L. crispatus</italic> has been reported as the most protective microorganism against HPV and HIV due to its antimicrobial compound production.</p>
</list-item>
<list-item>
<p>Depletion of <italic>L. crispatus</italic> and increased abundance of anaerobic bacteria such as <italic>Gardnerella vaginalis</italic>, <italic>Peptostreptococcus anaerobius</italic>, and <italic>Porphyromonas venonis</italic> is significantly more common in women with CIN and CAN.</p>
</list-item>
<list-item>
<p><italic>L. crispatus</italic> has been reported as the most effective microorganism in preventing bacterial dysbiosis compared to <italic>L. iners</italic>.</p>
</list-item>
<list-item>
<p>Evidence suggests that <italic>L. iners</italic> is associated with disease.</p>
</list-item>
<list-item>
<p>H<sub>2</sub>O<sub>2</sub> is thought to be produced by <italic>L. crispatus</italic> rather than <italic>L. iners.</italic></p>
</list-item>
<list-item>
<p><italic>L. crispatus</italic> produces both D-lactic acid and L-lactic acid.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>, <xref ref-type="bibr" rid="ref3">Amabebe and Anumba (2018)</xref>, <xref ref-type="bibr" rid="ref59">Norenhag et al. (2020)</xref>, <xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>, <xref ref-type="bibr" rid="ref18">Castanheira et al. (2021)</xref>, <xref ref-type="bibr" rid="ref75">Sims et al. (2021)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
<tr>
<td align="left" valign="top"><italic>Lactobacillus iners</italic>
</td>
<td align="left" valign="top"><list list-type="bullet">
<list-item>
<p><italic>L. iners</italic> is the most commonly reported <italic>Lactobacillus</italic>-dominated CST (community state type) detected in women diagnosed with CIN (cervical intraepithelial neoplasia).</p>
</list-item>
<list-item>
<p>It has a small genome, indicative of a symbiotic or parasitic lifestyle.</p>
</list-item>
<list-item>
<p>Some researchers suggest that <italic>L. iners</italic> may have clonal variants that promote health in some cases and are associated with dysbiosis and disease predisposition in others.</p>
</list-item>
<list-item>
<p>Microbiomes dominated by <italic>L. iners</italic> are less protective against cervicovaginal infections and exhibit higher rates of HPV infection and cervical dysplasia.</p>
</list-item>
<list-item>
<p><italic>L. iners</italic> does not appear to share many protective mechanisms with other <italic>Lactobacillus</italic> species and is considered intermediate in its ability to prevent cervical disease.</p>
</list-item>
<list-item>
<p>Compared to other <italic>Lactobacillus</italic> species, <italic>L. iners</italic> may be less capable of inhibiting the colonization of strict anaerobes and pathobionts.</p>
</list-item>
<list-item>
<p><italic>L. iners</italic> appears more capable of surviving and adapting to a wide range of pH and other metabolic stress-related conditions due to the constitutive and inducible expression of genes not seen in other Lactobacilli.</p>
</list-item>
<list-item>
<p><italic>L. iners</italic>-dominated microbiota is usually associated with dysbiosis and appears less stable and more prone to transition.</p>
</list-item>
<list-item>
<p><italic>L. iners</italic> was more frequently detected in co-infected women than healthy ones.</p>
</list-item>
<list-item>
<p>It has been reported in high proportion in women with HSIL (high-grade squamous intraepithelial lesions) and LSIL (low-grade squamous intraepithelial lesions) along with <italic>L. acidophilus</italic> and <italic>L. crispatus</italic>.</p>
</list-item>
<list-item>
<p><italic>L. iners</italic> has been found in women with HIV, HPV, HSV-2 (herpes simplex virus, type 2), CIN, and CAN (community state type anaerobe non-dominated).</p>
</list-item>
<list-item>
<p>The presence of <italic>L. iners</italic> has been proposed as a higher risk of HPV, SIL (squamous intraepithelial lesions), and CAN.</p>
</list-item>
<list-item>
<p>There&#x2019;s an association between <italic>L. iners</italic> and CIN or even CAN.</p>
</list-item>
</list>
</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>, <xref ref-type="bibr" rid="ref56">Mitra et al. (2016a)</xref>, <xref ref-type="bibr" rid="ref3">Amabebe and Anumba (2018)</xref>, <xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref>, <xref ref-type="bibr" rid="ref59">Norenhag et al. (2020)</xref>, <xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>, <xref ref-type="bibr" rid="ref18">Castanheira et al. (2021)</xref>, <xref ref-type="bibr" rid="ref75">Sims et al. (2021)</xref> and <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>HC, healthy controls; SIL, squamous intraepithelial lesions; LSIL, low-grade squamous intraepithelial lesions; HSIL, high-grade squamous intraepithelial lesions; CIN, cervical intraepithelial neoplasia; ICC, invasive cervical cancer; CAN, cervical cancer; HPV, human papillomavirus; BV, bacterial vaginitis; PID, pelvic inflammatory disease.</p>
</table-wrap-foot>
</table-wrap>
<p>As illustrated in <xref ref-type="table" rid="tab1">Table 1</xref>, microorganisms such as <italic>Fusobacterium</italic> spp., <italic>Sneathia</italic> spp., <italic>Anaerococcus</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Prevotella</italic> spp., <italic>Dialister</italic> spp., and <italic>Megasphaera</italic> spp. have been identified as biological markers for cervical cancer (CAN), high-grade squamous intraepithelial lesions (HSIL), and cervical intraepithelial neoplasia (CIN). Conversely, <italic>Lactobacillus crispatus</italic>, <italic>Lactobacillus gasseri</italic>, and <italic>Lactobacillus jensenii</italic> are associated with a decreased risk of infections, including HPV, CIN, and CAN. For an organized overview of this information, please refer to <xref ref-type="table" rid="tab2">Table 2</xref>. This table presents a clear view of the microorganisms found at different disease stages in the vagina. These stages include squamous intraepithelial lesions (SIL)&#x2014;further divided into low-grade (LSIL) and high-grade (HSIL), cervical intraepithelial neoplasia (CIN), invasive cervical cancer (ICC) or cervical cancer (CAN), and other infections such as pelvic inflammatory disease (PID), HPV, and bacterial vaginitis (BV). Additionally, a column has been included to indicate the microorganisms found in healthy controls (HC). <xref ref-type="fig" rid="fig1">Figure 1</xref> provides a visual representation of the microorganisms present during vaginal inflammation, offering insight into the microbial landscape under these conditions.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Microorganisms linked to various conditions in the vaginal environment.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">HC</th>
<th align="center" valign="top" colspan="2">SIL</th>
<th align="left" valign="top" rowspan="2">CIN</th>
<th align="left" valign="top" rowspan="2">ICC/CAN</th>
<th align="left" valign="top" rowspan="2">Other conditions (PID, HPV, BV)</th>
</tr>
<tr>
<th align="left" valign="top">LSIL</th>
<th align="left" valign="top">HSIL</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top"><italic>L. crispatus</italic> (<xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>)<break/><italic>L. jensenii</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>)<break/><italic>L. gasseri</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>)<break/><xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref> reported the next list about <italic>Streptococcus</italic> species:<break/><italic>S. agalactiae</italic>, <italic>S. alactolyticus</italic>, <italic>S. anginosus</italic>, <italic>S. australis</italic>, <italic>S. bovis</italic>, <italic>S. cristatus</italic>, <italic>S. fryi</italic>, <italic>S. gallinaceus</italic>, <italic>S. gordonii</italic>, <italic>S. infantis</italic>, <italic>S. intermedius</italic>, <italic>S. macedonicus</italic>, <italic>S. milleri</italic>, <italic>S. mutants</italic>, <italic>S. oligofermentans</italic>, <italic>S. oralis</italic>, <italic>S. oligofermentans</italic>, <italic>S. oralis</italic>, <italic>S. orisratti</italic>, <italic>S. parasanguinis</italic>, <italic>S. pasteuri</italic>, <italic>S. pseudopneumoniae</italic>, <italic>S. sanguinis</italic>, <italic>S. thermophiles</italic>, <italic>S. tigurinus</italic>, <italic>S. vestibularis</italic></td>
<td align="left" valign="top"><italic>Fusobacterium</italic> spp. (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>)<break/><italic>Sneathia</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>)<break/><italic>G. vaginalis</italic> (<xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>)<break/><xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref>, reported the next list about <italic>Streptococcus</italic> species:<break/><italic>S. agalactiae</italic>, <italic>S. alactolyticus</italic>, <italic>S. anginosus</italic>, <italic>S. australis</italic>, <italic>S. bovis</italic>, <italic>S. cristatus</italic>, <italic>S. fryi</italic>, <italic>S. gallinaceus</italic>, <italic>S. gordonii</italic>, <italic>S. infantis</italic>, <italic>S. intermedius</italic>, <italic>S. macedonicus</italic>, <italic>S. milleri</italic>, <italic>S. mutants</italic>, <italic>S. oligofermentans</italic>, <italic>S. oralis</italic>, <italic>S. oligofermentans</italic>, <italic>S. oralis</italic>, <italic>S. orisratti</italic>, <italic>S. parasanguinis</italic>, <italic>S. pasteuri</italic>, <italic>S. pseudopneumoniae</italic>, <italic>S. sanguinis</italic>, <italic>S. thermophiles</italic>, <italic>S. tigurinus</italic>, <italic>S. vestibularis</italic></td>
<td align="left" valign="top"><italic>Fusobacterium</italic> spp. (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>) <italic>Sneathia</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>Gardnerella</italic> (<xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>)<break/><italic>G. vaginalis</italic> (<xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>)<break/><italic>Prevotella</italic> (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>P. buccalis</italic>, <italic>P. timonensis</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>F. vaginae</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Dialister</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Megasphaera</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref>, reported the next list about <italic>Streptococcus</italic> species:<break/><italic>S. agalactiae</italic>, <italic>S. alactolyticus</italic>, <italic>S. anginosus</italic>, <italic>S. australis</italic>, <italic>S. bovis</italic>, <italic>S. cristatus</italic>, <italic>S. fryi</italic>, <italic>S. gallinaceus</italic>, <italic>S. gordonii</italic>, <italic>S. infantis</italic>, <italic>S. intermedius</italic>, <italic>S. macedonicus</italic>, <italic>S. milleri</italic>, <italic>S. mutants</italic>, <italic>S. oligofermentans</italic>, <italic>S. oralis</italic>, <italic>S. oligofermentans</italic>, <italic>S. oralis</italic>, <italic>S. orisratti</italic>, <italic>S. parasanguinis</italic>, <italic>S. pasteuri</italic>, <italic>S. pseudopneumoniae</italic>, <italic>S. sanguinis</italic>, <italic>S. thermophiles</italic>, <italic>S. tigurinus</italic>, <italic>S. vestibularis</italic></td>
<td align="left" valign="top"><italic>Fusobacterium</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>)<break/><italic>Sneathia</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>)<break/><italic>Sneathia sanguinegens</italic> (<xref ref-type="bibr" rid="ref56">Mitra et al., 2016a</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Mycoplasma</italic> (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>)<break/><italic>Chlamydia trachomatis</italic> (<xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>)<break/><italic>Anaerococcus tetradius</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>)<break/><italic>Peptostreptococcus anaerobius</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Gardnerella</italic> (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>)<break/><italic>Gardnerella vaginalis</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>)<break/><italic>P. bucalis</italic>, <italic>P. timonensis</italic>, <italic>P. disiens</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Fannyhessea vaginae</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Streptococcus</italic> (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>)<break/><italic>Finegoldia magna</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)</td>
<td align="left" valign="top"><italic>Fusobacterium</italic> (<xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>Fusobacterium necrophorum</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>)<break/><italic>Sneathia</italic> spp. (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>)<break/><italic>Sneathia amnii</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>)<break/><italic>Mycoplasma</italic> (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>Anaerococcus</italic> (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>Peptostreptococcus</italic> (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>P. anaerobius</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>G. vaginalis</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Prevotella</italic> (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>P. bucalis</italic>, <italic>P. timonensis</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Fannyhessea vaginae</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Streptococcus</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>)<break/><italic>Dialister</italic> (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>D. invisus</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><italic>Megasphaera</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>Peptoniphilus</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>)<break/><italic>Finegoldia magna</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)</td>
<td align="left" valign="top"><bold>PID:</bold><break/><italic>P. anaerobius</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>)<break/><bold>HPV:</bold><break/><italic>Sneathia</italic> spp. (<xref ref-type="bibr" rid="ref56">Mitra et al., 2016a</xref>,<xref ref-type="bibr" rid="ref57">b</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>), <italic>Fusobacterium</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>), <italic>Chlamidia trachomatis</italic> (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>) <italic>Anaerococcus</italic> (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), <italic>Gardnerella vaginalis</italic> (<xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>), <italic>Prevotella</italic> (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), <italic>Streptococcus</italic> (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>), <italic>Peptoniphilus</italic> (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>)<break/><bold>BV:</bold><break/><italic>Fusobacterium</italic> (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>), <italic>Fannyhessea</italic> (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>), (<xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>), <italic>Mycoplasma</italic> (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>), <italic>M. genitalium</italic>, <italic>M. hominis</italic> (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>), <italic>S. sanguinegens</italic> (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>), <italic>S. amnii</italic> (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>), <italic>Peptostreptococcus</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), <italic>Gardnerella</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>), <italic>G. vaginalis</italic> (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>), <italic>Prevotella</italic> (<xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), <italic>Streptococcus</italic> (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>), <italic>Dialister</italic> (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>), <italic>Megasphaera</italic> (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>), <italic>Mobiluncus</italic> (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>), <italic>M. mulieris</italic>, <italic>M. curtisii</italic> (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>HC, healthy controls; SIL, squamous intraepithelial lesions; LSIL, low-grade squamous intraepithelial lesions; HSIL, high-grade squamous intraepithelial lesions; CIN, cervical intraepithelial neoplasia; ICC, invasive cervical cancer; CAN, cervical cancer; HPV, human papillomavirus; BV, bacterial vaginitis; PID, pelvic inflammatory disease.</p>
</table-wrap-foot>
</table-wrap>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Vaginal microorganisms in a healthy vagina versus a dysbiosis stage in the vagina. Source of image: Authors and adapted from <xref ref-type="bibr" rid="ref99">Zhou et al. (2021)</xref>. The figure reveals the transformation that the vaginal microbiota undergoes between healthy and dysbiotic conditions. In a healthy state, the environment is primarily characterized by the presence of <italic>Lactobacillus</italic> species. On the other hand, in a state of dysbiosis, the environment is largely dominated by a variety of other bacteria, including <italic>Prevotella</italic> spp., the bacterium now known as <italic>Fannyhessea</italic> spp. (formerly <italic>Atopobium</italic> spp.), <italic>Streptococcus</italic> spp., and other anaerobic bacteria.</p>
</caption>
<graphic xlink:href="fmicb-15-1352778-g001.tif"/>
</fig>
</sec>
<sec id="sec5">
<label>5</label>
<title>Microbial markers and cervical cancer</title>
<p>Advancements in microbiome research have unveiled new avenues for understanding the root causes of various diseases, including cancer. With the advent of high-throughput technologies such as genomics, transcriptomics, metagenomics, and metatranscriptomics, researchers can now generate an enormous amount of data (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>). When it comes to cervical cancer, this vast repository of data is meticulously scrutinized to identify potential biomarkers that could transform its diagnosis and prognosis (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref35">Han et al., 2021</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>).</p>
<p>Researchers propose that certain microorganisms serve as beneficial diagnostic markers for cervical cancer or as indicators of infection severity. From the host&#x2019;s perspective, diverse types of biomarkers (prognostic, predictive, and diagnostic) are being explored to enhance the management of cervical cancer.</p>
<p>High-throughput technologies have paved the way for a deeper exploration of the complex relationship between microbiota and cancer. The capacity to examine the entire microbiome and its intricate micro-ecosystems has led to the identification of specific microbial entities as predictive markers of cancer (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>). At present, research is primarily centered around four main areas: characterizing microbial diversity and composition, conducting microbial functional analyses, predicting biomarkers, and investigating potential therapeutic applications. However, these areas are still nascent and need to be solidified in clinical practice (<xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>).</p>
<p>To fully unravel the correlation between the microbiome and cancer, the consistent use of high-throughput methodologies is deemed necessary. Various studies conducted on the microbiota associated with cervical cancer or cervical disease have reiterated the urgent need for reliable biomarkers to improve the diagnosis of cervical cancer or prevent it. There is a pressing need to devise novel diagnostic strategies incorporating microbiological markers for early detection of cervical cancer in patients (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref87">Wei et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>).</p>
<p>Several microorganisms, including <italic>Fusobacterium</italic> spp., <italic>Sneathia</italic> spp. (<italic>S. amnii</italic>), <italic>Anaerococcus</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Gardnerella</italic> spp. (<italic>G. vaginalis</italic>), <italic>Prevotella</italic> spp., <italic>Dialister</italic> spp., <italic>Fannyhessea</italic> spp. (<italic>F. vaginae</italic>), <italic>Streptococcus</italic> spp., <italic>Megasphaera</italic> spp., <italic>L. crispatus</italic>, and <italic>L. gasseri</italic> (<xref ref-type="bibr" rid="ref43">Kori and Arga, 2018</xref>; <xref ref-type="bibr" rid="ref41">Klein et al., 2020b</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>), have been suggested as microbiological markers for cervical cancer. The profound implications of these findings for the future of cancer diagnostics underscore the importance of continued research in this promising field.</p>
</sec>
<sec id="sec6">
<label>6</label>
<title>Data exploration</title>
<p>In an effort to gain deeper insights from the literature, a rigorous process of search was carried out. This process targeted papers that provided accessible information in the NCBI databases. Initially, six potential articles were identified, each providing specific details on vaginal microbiota and cervical health conditions, as illustrated in <xref ref-type="table" rid="tab3">Table 3</xref>. However, upon further exploration for raw data within the NCBI, only four of these articles&#x2014;marked with asterisk&#x2014;offered the required information.</p>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>Potential articles containing information on vaginal microbiota and cervical health conditions.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Objective</th>
<th align="left" valign="top">Type of analysis</th>
<th align="left" valign="top">Technique</th>
<th align="left" valign="top">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">To assess the alteration in vaginal microbiota during the progression of cervical cancer in women infected with high-risk HPV</td>
<td align="left" valign="middle">Metagenomics: 16S rRNA genes</td>
<td align="left" valign="middle">Next-generation sequencing</td>
<td align="left" valign="middle">
<xref ref-type="bibr" rid="ref77">So et al. (2020)</xref><sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="middle">To define the changes in the cervical microbiome in women of reproductive age during the transition from squamous intraepithelial lesions (SIL) to cervical cancer (CAN)</td>
<td align="left" valign="middle">Metagenomics: 16S rRNA genes</td>
<td align="left" valign="middle">Whole Genome Sequencing</td>
<td align="left" valign="middle">
<xref ref-type="bibr" rid="ref92">Wu et al. (2021)</xref>
</td>
</tr>
<tr>
<td align="left" valign="middle">To examine the correlation between infections in the cervix and vagina and the development of pre-cancerous cervical lesions</td>
<td align="left" valign="middle">Metagenomics: 16S rRNA genes</td>
<td align="left" valign="middle">Next-generation sequencing</td>
<td align="left" valign="middle">
<xref ref-type="bibr" rid="ref44">Kwasniewski et al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left" valign="middle">To delve into the possible connection between the composition of vaginal microbes and CAN, presenting its diagnostic value in predicting, classifying, and tracking CAN progression. This also includes differentiating samples from diseased individuals from those of healthy controls</td>
<td align="left" valign="middle">Metagenomics: 16S rRNA genes</td>
<td align="left" valign="middle">High-throughput sequencing</td>
<td align="left" valign="middle">
<xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref><sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="middle">To foster a comprehensive and precise comprehension of the structure and ecology of the vaginal microbial ecosystem in women without symptoms, with a focus on understanding the purpose and fundamental operation of the vaginal microbiota</td>
<td align="left" valign="middle">Metagenomics: 16S rRNA genes</td>
<td align="left" valign="middle">Pyrosequencing</td>
<td align="left" valign="middle">
<xref ref-type="bibr" rid="ref70">Ravel et al. (2011)</xref><sup>&#x002A;</sup></td>
</tr>
<tr>
<td align="left" valign="middle">To investigate the relationship between the diversity and composition of cervical microbiota, as per a histopathological diagnosis at each stage of CAN&#x2019;s natural history, and the expression levels of cytokines in the cervix</td>
<td align="left" valign="middle">Metagenomics: 16S rRNA genes</td>
<td align="left" valign="middle">Sanger sequencing</td>
<td align="left" valign="middle">
<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref><sup>&#x002A;</sup></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>&#x002A;</sup>Articles with raw data freely available for analysis.</p>
</table-wrap-foot>
</table-wrap>
<p>Despite the heterogeneity inherent in each database, we undertook a data exploration process to confirm if earlier published data (<xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>) aligns with recent publications (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>). It is worth noting that such analyses invariably encounter limitations rooted in the data source, standardization of metadata information, and the procedures employed for sequencing results, among other factors. Nevertheless, our investigation focused on deciphering microbiota patterns across various cervical health conditions.</p>
<p>Regarding the fourth study under scrutiny (<xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>), the absence of raw data within the manuscript necessitated a comprehensive reanalysis of the samples provided, guided solely by accession numbers for sequences in the NCBI database. This re-evaluation was executed employing the QIIME-2022.8 pipeline, strictly adhering to the author&#x2019;s guidelines delineated within their paper. Denoising was performed utilizing DADA2 (Divisive Amplicon Denoising Algorithm 2) (<xref ref-type="bibr" rid="ref15">Callahan et al., 2016</xref>), and despite <xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref> usage of the Silva v138 database, we elected to use the Silva (16S/18S rRNA) (<xref ref-type="bibr" rid="ref69">Quast et al., 2013</xref>; <xref ref-type="bibr" rid="ref93">Yilmaz et al., 2014</xref>) database v132. Similar to the authors, the sequences among the reanalyzed samples were rarefied to a sequencing depth of 6,919 reads.</p>
<p>Subsequent to the successful acquisition of data from each of the four papers, the next step was to distill this data, as showed in <xref ref-type="table" rid="tab4">Table 4</xref>. All data abundances were normalized to values ranging from 0 to 1. We successfully compiled a total of 496 samples, encapsulating information pertaining to the type of cervical health condition (CAN, CIN, SIL, and control), the respective study reported, and HPV presence (restricted to CAN and Control samples). The statistical analysis and graphic representation were executed using the R 4.2.1 version.</p>
<table-wrap position="float" id="tab4">
<label>Table 4</label>
<caption>
<p>Data derived from databases on NCBI with accessible raw information (<xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>).</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">Type</th>
<th align="center" valign="top" rowspan="2">
<italic>n</italic>
</th>
<th align="left" valign="top" rowspan="2">Study</th>
<th align="center" valign="top" rowspan="2">
<italic>n</italic>
</th>
<th align="center" valign="top" colspan="2">HPV</th>
</tr>
<tr>
<th align="center" valign="top">Positive</th>
<th align="center" valign="top">Negative</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" rowspan="3">CAN</td>
<td align="center" valign="top" rowspan="3">26</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>
</td>
<td align="center" valign="top">8</td>
<td align="center" valign="top">8</td>
<td align="center" valign="top">N/A</td>
</tr>
<tr>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref>
</td>
<td align="center" valign="top">8</td>
<td align="center" valign="top">8</td>
<td align="center" valign="top">N/A</td>
</tr>
<tr>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>
</td>
<td align="center" valign="top">10</td>
<td align="center" valign="top">10</td>
<td align="center" valign="top">N/A</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CIN</td>
<td align="center" valign="top" rowspan="2">28</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref>
</td>
<td align="center" valign="top">8</td>
<td align="center" valign="top">N/A</td>
<td align="center" valign="top">N/A</td>
</tr>
<tr>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>
</td>
<td align="center" valign="top">20</td>
<td align="center" valign="top">N/A</td>
<td align="center" valign="top">N/A</td>
</tr>
<tr>
<td align="left" valign="top">SIL</td>
<td align="center" valign="top">4</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>
</td>
<td align="center" valign="top">4</td>
<td align="center" valign="top">N/A</td>
<td align="center" valign="top">N/A</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="4">Control</td>
<td align="center" valign="top" rowspan="4">438</td>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al. (2016)</xref>
</td>
<td align="center" valign="top">17</td>
<td align="center" valign="top">10</td>
<td align="center" valign="top">7</td>
</tr>
<tr>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref38">Kang et al. (2021)</xref>
</td>
<td align="center" valign="top">7</td>
<td align="center" valign="top">N/A</td>
<td align="center" valign="top">7</td>
</tr>
<tr>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref77">So et al. (2020)</xref>
</td>
<td align="center" valign="top">20</td>
<td align="center" valign="top">10</td>
<td align="center" valign="top">10</td>
</tr>
<tr>
<td align="left" valign="top"><xref ref-type="bibr" rid="ref70">Ravel et al. (2011)</xref>
</td>
<td align="center" valign="top">394</td>
<td align="center" valign="top">N/A</td>
<td align="center" valign="top">394</td>
</tr>
<tr>
<td align="left" valign="top">Total</td>
<td align="center" valign="top">496</td>
<td/>
<td/>
<td/>
<td/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>n</italic>, number of samples.</p>
</table-wrap-foot>
</table-wrap>
<p>It is important to highlight that our analysis was conducted within certain constraints. The availability of raw data posed a significant limitation, necessitating the reanalysis of samples in specific instances. Additionally, the low number of articles utilized for our analysis, owing to our commitment to use only freely accessible information, may have affected the comprehensiveness of our study. Despite these challenges, we remained committed to conducting a meticulous and robust exploration of the available data.</p>
<p>According to the previous <xref ref-type="table" rid="tab1">Table 1</xref>, where is presented the microorganisms proposed as microbiological markers in cervical cancer or cervix inflammation, the common bacteria genera found in each one of the four articles that were also mentioned in this table (as potential biomarkers) were: <italic>Fusobaterium</italic> spp., <italic>Sneathia</italic> spp., <italic>Streptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Dialister</italic> spp., <italic>Megasphaera</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Prevotella</italic> spp., <italic>Anaerococcus</italic> spp., and <italic>Lactobacillus</italic> spp.</p>
<p>Our findings, as outlined in <xref ref-type="table" rid="tab4">Table 4</xref>, consistently demonstrate the presence of HPV in all documented cases of cervical abnormalities (CAN). To gain a deeper understanding of the bacterial profile associated with CAN, we employed a Venn diagram, as illustrated in <xref ref-type="fig" rid="fig2">Figure 2A</xref>. This visualization not only highlights the commonly identified bacteria in CAN cases, but also those observed in control samples. In the context of CAN, our analysis revealed 17 frequently reported bacterial genera: <italic>Fusobacterium</italic> spp., <italic>Sneathia</italic> spp., <italic>Streptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Dialister</italic> spp., M<italic>egasphaera</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Staphylococcus</italic> spp., <italic>Campylobacter</italic> spp., <italic>Parvimonas</italic> spp., <italic>Prevotella</italic> spp., <italic>Haemophilus</italic> spp., <italic>Porphyromonas</italic> spp., <italic>Anaerococcus</italic> spp., <italic>Lactobacillus</italic> spp., <italic>Ureaplasma</italic> spp.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Bacterial composition and diversity. <bold>(A)</bold> The Venn diagram depicts the overlap of common bacterial types identified in CAN and CONTROL groups, based on the 50 most abundant bacteria in each study. <bold>(B)</bold> Simpson&#x2019;s index measures genera diversity across various cervical health conditions. Notably, CONTROL samples exhibit lower diversity compared to CAN, CIN, and SIL conditions. The Kruskal-Wallis test yielded a <italic>p</italic>-value &#x003C;0.05, signifying significant differences in diversity between CONTROL vs. CAN and CONTROL vs. CIN. <bold>(C)</bold> A box plot illustrating the prevalence of HPV infection in control samples across the studied papers. <bold>(D)</bold> Identification of common bacterial types in HPV (&#x2212;) and HPV (+) groups in each paper, with unique bacteria within each group highlighted in bold.</p>
</caption>
<graphic xlink:href="fmicb-15-1352778-g002.tif"/>
</fig>
<p>To further elucidate the bacterial landscape, an additional Venn diagram was constructed to identify common bacterial genera in control samples from the studies examined (<xref ref-type="fig" rid="fig2">Figure 2A</xref>). We observed that 16 genera were common in these samples: <italic>Sneathia</italic> spp., <italic>Streptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Dialister</italic> spp., <italic>Megasphaera</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Staphylococcus</italic> spp., <italic>Parvimonas</italic> spp., <italic>Prevotella</italic> spp., <italic>Porphyromonas</italic> spp., <italic>Anaerococcus</italic> spp., <italic>Lactobacillus</italic> spp., <italic>Ureaplasma</italic> spp., <italic>Aerococcus</italic> spp., <italic>Finegoldia</italic> spp., <italic>Enterococcus</italic> spp.</p>
<p>In reference to <xref ref-type="table" rid="tab1">Table 1</xref>, which proposes certain microorganisms as potential microbiological markers for cervical cancer or cervix inflammation, we noted that the following genera were shared between our four selected articles and those suggested as potential biomarkers: <italic>Fusobacterium</italic> spp., <italic>Sneathia</italic> spp., <italic>Streptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Dialister</italic> spp., <italic>Megasphaera</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Prevotella</italic> spp., <italic>Anaerococcus</italic> spp., and <italic>Lactobacillus</italic> spp. This overlap may indicate a significant link between these bacterial genera and cervical health disorders.</p>
<p>Simpson&#x2019;s diversity index, a standard tool for determining alpha diversity, gauges the prevalence of dominant species and inversely correlates with species diversity (<xref ref-type="bibr" rid="ref72">Sagar and Sharma, 2012</xref>). As illustrated in <xref ref-type="fig" rid="fig2">Figure 2B</xref>, our analyses calculated this alpha diversity. The data suggests that as the cervical health condition transitions from Control to SIL, CIN, and CAN, there is an observable increase in microbiota, corroborating previous literature (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>). <xref ref-type="fig" rid="fig2">Figure 2C</xref> presents a similar pattern for HPV (&#x2212;) samples, where bacterial diversity is comparatively lower than HPV (+) samples. The median value for boxes representing HPV (&#x2212;) samples is less than 0.25, contrasting with those representing HPV (+) samples. Furthermore, we compiled a list of the top 50 bacterial genera present in HPV (+) and HPV (&#x2212;) samples across the four studied papers. As depicted in <xref ref-type="fig" rid="fig2">Figure 2D</xref>, these bacteria are displayed accordingly.</p>
<p>It is crucial to emphasize that our exploration of the data did not follow the strict guidelines of a meta-analysis or systematic review. This absence of a structured approach may introduce a potential bias in our findings, as we might have overlooked certain studies or emphasized others disproportionately. Also, because we focused on information that&#x2019;s freely available, there may be some limits to the scope and depth of our analysis. Despite these limitations, we see our work as an initial step in understanding the overall trends in microbiota composition during cervical cancer progression. Our findings should be interpreted with caution, considering the potential biases and methodological constraints. However, we believe our research provides valuable insights that can pave the way for future, more thorough investigations in this crucial area.</p>
<sec id="sec7">
<label>6.1</label>
<title>Microbiota and HPV</title>
<p>Based on the distinctive microorganisms identified solely in HPV (+) and HPV (&#x2212;) samples (<xref ref-type="fig" rid="fig2">Figure 2D</xref>), existing literature has associated <italic>Methylobacterium</italic> spp. as a predominant bacteria in the ovary (<xref ref-type="bibr" rid="ref4">Amabebe and Anumba, 2020</xref>) and ovarian cancer (<xref ref-type="bibr" rid="ref64">Peric et al., 2019</xref>). Our data, as presented in <xref ref-type="fig" rid="fig2">Figure 2D</xref>, identified <italic>Methylobacterium</italic> spp. within the HPV (&#x2212;) groups. Notably, this microorganism emerged as the sole differential entity when compared to HPV (+) samples. However, given the inherent limitations of a review paper, such as data heterogeneity, further research is required to substantiate these findings.</p>
<p>Contrarily, <italic>Alloscardovia</italic> spp., <italic>Eubacterium</italic> spp., and <italic>Mycoplasma</italic> spp. were exclusively detected in HPV (+) samples. Previous reports have also documented <italic>Alloscardovia</italic> spp. in HPV (+) samples (<xref ref-type="bibr" rid="ref30">Gao et al., 2013</xref>), and a 2019 case study associated this microorganism with preterm premature rupture of membranes (PPROM) (<xref ref-type="bibr" rid="ref16">Cardona-Benavides et al., 2019</xref>). <italic>Eubacterium</italic> spp., meanwhile, has been reported more frequently in HPV (+) patients than in HPV (&#x2212;) patients (<xref ref-type="bibr" rid="ref17">Carrillo-Ng et al., 2021</xref>) and is also associated with BV cases (<xref ref-type="bibr" rid="ref29">Fredricks et al., 2005</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>). Moreover, <italic>Mycoplasma</italic> spp. has been found to be prevalent among women with HPV (+) (<xref ref-type="bibr" rid="ref41">Klein et al., 2020b</xref>), with its abundance noted to increase in women with cervical lesions (<xref ref-type="bibr" rid="ref61">Pacha-Herrera et al., 2022</xref>). <italic>Mycoplasma</italic> spp. has also been implicated as a potential cause of persistent HPV infection (<xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>) and has been identified in BV infections (<xref ref-type="bibr" rid="ref28">Ferris et al., 2004</xref>; <xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>).</p>
<p>Our review suggests that <italic>Alloscardovia</italic> spp., <italic>Eubacterium</italic> spp., and <italic>Mycoplasma</italic> spp. could potentially serve as biomarkers for HPV (+), while <italic>Methylobacterium</italic> spp. might be a marker for HPV (&#x2212;). However, it&#x2019;s important to note that due to the limitations inherent in this review and the data evaluated, these observations remain tentative. There is a clear need for continued research to further explore the role of the microbiota in the development of HPV, as this could provide valuable insights that may aid in the fight against this condition.</p>
</sec>
<sec id="sec8">
<label>6.2</label>
<title>Microbiota and cervical cancer progression</title>
<p>Based on the findings outlined in Section 6, <xref ref-type="table" rid="tab5">Table 5</xref> encapsulates the shared bacteria identified in the intersection of the Venn diagram depicted in <xref ref-type="fig" rid="fig2">Figure 2A</xref>. This table effectively illustrates the genera of bacteria that appear to be prevalent as cervical cancer progresses, as well as in healthy controls.</p>
<table-wrap position="float" id="tab5">
<label>Table 5</label>
<caption>
<p>Microbiota and its presence according to the health condition: CAN or CONTROL.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Bacteria</th>
<th align="center" valign="top">CAN<sup>&#x002A;</sup></th>
<th align="center" valign="top">CONTROL<sup>&#x002A;</sup></th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top"><italic>Fusobacterium</italic> spp.</td>
<td align="center" valign="top">X</td>
<td/>
</tr>
<tr>
<td align="left" valign="top"><italic>Sneathia</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Streptococcus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Gardnerella</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Dialister</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Megasphaera</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Peptostreptococcus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td/>
</tr>
<tr>
<td align="left" valign="top"><italic>Peptoniphilus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Staphylococcus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Campylobacter</italic> spp.</td>
<td align="center" valign="top">X</td>
<td/>
</tr>
<tr>
<td align="left" valign="top"><italic>Parvimonas</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Prevotella</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Haemophilus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td/>
</tr>
<tr>
<td align="left" valign="top"><italic>Porphyromonas</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Anaerococcus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Lactobacillus</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Ureaplasma</italic> spp.</td>
<td align="center" valign="top">X</td>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Aerococcus</italic> spp.</td>
<td/>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Finegoldia</italic> spp.</td>
<td/>
<td align="center" valign="top">X</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Enterococcus</italic> spp.</td>
<td/>
<td align="center" valign="top">X</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>&#x002A;</sup>Data according to <xref ref-type="fig" rid="fig2">Figure 2</xref>.</p>
</table-wrap-foot>
</table-wrap>
<p>Focusing first on the CONTROL samples, <italic>Fusobacterium</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Campylobacter</italic> spp., and <italic>Haemophilus</italic> spp. were conspicuously absent from the bacterial genera identified. Drawing from existing literature, <italic>Fusobacterium</italic> spp. has been exclusively reported in CAN or CIN samples, which may account for the numerous propositions of <italic>Fusobacterium</italic> spp. as a potential marker of CAN (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>). The potential of <italic>Fusobacterium</italic> spp. as an oncogenic entity and a promoter of dysplasia development has also been deliberated (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>). Additional characteristics of this microorganism are detailed in <xref ref-type="table" rid="tab1">Table 1</xref>. Thus, <xref ref-type="table" rid="tab5">Table 5</xref> in alignment with the literature, indicates that <italic>Fusobacterium</italic> spp. is only present in CIN, SIL, and CAN samples.</p>
<p><italic>Peptostreptococcus</italic> spp., a bacterial genus not detected in control samples (refer to <xref ref-type="table" rid="tab5">Table 5</xref>), is associated with cervical conditions such as cervical intraepithelial neoplasia (CIN) and cervical cancer (CAN) (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>). This bacterium also plays a role in female genital tract infections like bacterial vaginosis and pelvic inflammatory disease (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>) and is considered a distinctive marker for the CAN group (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>).</p>
<p><italic>Campylobacter</italic> spp., identified as a CAN marker (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), was first reported in CIN cases in 2018 (<xref ref-type="bibr" rid="ref94">Zhang et al., 2018</xref>). This review&#x2019;s analysis revealed the presence of this bacterium exclusively in CAN samples (<xref ref-type="table" rid="tab5">Table 5</xref>).</p>
<p><italic>Haemophilus</italic> spp. is another bacterial genus absent in control samples. It is believed to contribute to trichomoniasis as a colonizing microorganism (<xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>) and has been reported only in CAN samples (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), explaining its absence in the control group (<xref ref-type="table" rid="tab5">Table 5</xref>).</p>
<p>Three bacterial genera&#x2014;<italic>Finegoldia</italic> spp., <italic>Enterococcus</italic> spp., and <italic>Aerococcus</italic> spp.&#x2014;were found solely in control samples, contrasting with CAN samples (<xref ref-type="table" rid="tab5">Table 5</xref>). <italic>Finegoldia</italic>&#x2019;s spp. exclusive presence in control samples might be due to its higher abundance compared to other conditions, as analyses focused on the top 50 most abundant bacteria from each studied paper. More information about <italic>Finegoldia</italic> spp. can be found in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Enterococcus</italic> spp., commonly found in healthy samples and associated with HPV clearance (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref97">Zhou et al., 2007</xref>; <xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref14">Borgdorff et al., 2014</xref>; <xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>), aligns with the results observed in <xref ref-type="table" rid="tab5">Table 5</xref>.</p>
<p><italic>Aerococcus</italic> spp., another genus found exclusively in control samples, corroborates previous literature (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref97">Zhou et al., 2007</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>). Additional information about <italic>Aerococcus</italic> spp. is available in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Sneathia</italic> spp., <italic>Streptococcus</italic> spp., <italic>Gardnerella</italic> spp., <italic>Dialister</italic> spp., <italic>Megasphaera</italic> spp., <italic>Peptoniphilus</italic> spp., <italic>Staphylococcus</italic> spp., <italic>Parvimonas</italic> spp., <italic>Prevotella</italic> spp., <italic>Porphyromonas</italic> spp., <italic>Anaerococcus</italic> spp., <italic>Lactobacillus</italic> spp., and <italic>Ureaplasma</italic> spp. were found in both CAN and control samples.</p>
<p><italic>Sneathia</italic> spp. has been reported in CIN samples (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), bacterial vaginosis (BV) cases (<xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref50">Liu et al., 2013</xref>; <xref ref-type="bibr" rid="ref14">Borgdorff et al., 2014</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>), squamous intraepithelial lesion (SIL) samples (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), HPV infections (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref25">Dareng et al., 2016</xref>; <xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>) and as a biomarker of cervical neoplasia (<xref ref-type="bibr" rid="ref33">Godoy-Vitorino et al., 2018</xref>). However, it is also a common member of the vaginal community (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref84">Verstraelen et al., 2004</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>), suggesting it should not be considered a biomarker. More information about <italic>Sneathia</italic> spp. is provided in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Streptococcus</italic> spp. has been observed in CAN samples (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), cervical disease cases (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), and CIN patients (<xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>). Still, it was also identified as part of the vaginal composition (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref97">Zhou et al., 2007</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref30">Gao et al., 2013</xref>; <xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>) and associated with HPV clearance (<xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>), which aligns with our findings that this microorganism appears in both groups. Further information about Streptococcus can be found in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Gardnerella</italic> spp., a bacterium identified in both disease and control samples, is classified as an anaerobic carcinogen (<xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>). It has been found in cervical intraepithelial neoplasia (CIN) samples (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>), bacterial vaginosis (BV) cases (<xref ref-type="bibr" rid="ref13">Borgdorff et al., 2016</xref>; <xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>), HPV persistent infections (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>), and control samples (<xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>). This aligns with our paper analysis results. Additional information about Gardnerella can be found in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Dialister</italic> spp., another genus present in both groups (cervical cancer and control), is an opportunistic pathogen influenced by <italic>Lactobacillus</italic> spp. (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>). It has been reported as a marker genus in cervical cancer (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), and found in CIN samples (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), BV (<xref ref-type="bibr" rid="ref82">van de Wijgert et al., 2014</xref>; <xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>; <xref ref-type="bibr" rid="ref4">Amabebe and Anumba, 2020</xref>), and HPV cases (<xref ref-type="bibr" rid="ref30">Gao et al., 2013</xref>; <xref ref-type="bibr" rid="ref8">Audirac-Chalifour et al., 2016</xref>; <xref ref-type="bibr" rid="ref25">Dareng et al., 2016</xref>). However, it&#x2019;s also been observed in control samples (<xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), which concurs with our findings. More details about <italic>Dialister</italic> spp. are provided in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Megasphaera</italic> spp., found in both disease and normal samples, has been reported in squamous intraepithelial lesion (SIL) and cervical cancer samples (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), CIN cases (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>), BV patients (<xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>) and normal samples (<xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>). <xref ref-type="table" rid="tab1">Table 1</xref> provides more details on this bacterium.</p>
<p><italic>Peptoniphilus</italic> spp., another common bacterium, has been reported as a cervical cancer marker (<xref ref-type="bibr" rid="ref77">So et al., 2020</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), found in BV samples (<xref ref-type="bibr" rid="ref29">Fredricks et al., 2005</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref82">van de Wijgert et al., 2014</xref>), HPV infections (<xref ref-type="bibr" rid="ref74">Shannon et al., 2017</xref>; <xref ref-type="bibr" rid="ref38">Kang et al., 2021</xref>), and control samples (<xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref70">Ravel et al., 2011</xref>). Further details about <italic>Peptoniphilus</italic> spp. can be found in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Staphylococcus</italic> spp., although common in control samples (<xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>), has also been observed in conditions such as cervical cancer (<xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>), aerobic vaginitis (<xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>), and SIL (<xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>).</p>
<p><italic>Parvimonas</italic> spp. is another bacterium observed in both cervical cancer and control samples. It has been reported in control samples (<xref ref-type="bibr" rid="ref74">Shannon et al., 2017</xref>), cervical diseases (<xref ref-type="bibr" rid="ref33">Godoy-Vitorino et al., 2018</xref>; <xref ref-type="bibr" rid="ref77">So et al., 2020</xref>), and BV patients (<xref ref-type="bibr" rid="ref82">van de Wijgert et al., 2014</xref>).</p>
<p><italic>Prevotella</italic> spp. has been found in control samples (<xref ref-type="bibr" rid="ref46">Lewis et al., 2017</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>) and other conditions like HPV infections (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>), CIN (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref33">Godoy-Vitorino et al., 2018</xref>; <xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>), CAN (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), and BV (<xref ref-type="bibr" rid="ref26">di Paola et al., 2017</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref44">Kwasniewski et al., 2018</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>). This aligns with the results summarized in <xref ref-type="table" rid="tab5">Table 5</xref> and detailed in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p><italic>Porphyromonas</italic> spp., also present in both disease and control cases (<xref ref-type="table" rid="tab5">Table 5</xref>), has been observed in CAN (<xref ref-type="bibr" rid="ref76">Sims et al., 2019</xref>, <xref ref-type="bibr" rid="ref75">2021</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), BV samples (<xref ref-type="bibr" rid="ref29">Fredricks et al., 2005</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref82">van de Wijgert et al., 2014</xref>), and control cases (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>).</p>
<p><italic>Anaerococcus</italic> spp. has been reported in control samples (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref97">Zhou et al., 2007</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref7">Arroyo M&#x00FC;hr et al., 2021</xref>), and diseases such as CAN (<xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), SIL (<xref ref-type="bibr" rid="ref55">Mitra et al., 2015</xref>, <xref ref-type="bibr" rid="ref57">2016b</xref>), and CIN cases (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref33">Godoy-Vitorino et al., 2018</xref>).</p>
<p><italic>Lactobacillus</italic> spp., another common bacterium (<xref ref-type="table" rid="tab5">Table 5</xref>), is seen in various conditions depending on the species&#x2014;either as a disease marker or a health biomarker in the vaginal composition. For instance, it has been reported in conditions like CAN (<xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>), CIN (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>), SIL (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>), HPV clearance (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>), cervical dysplasia (<xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>), and control samples (<xref ref-type="bibr" rid="ref57">Mitra et al., 2016b</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>; <xref ref-type="bibr" rid="ref59">Norenhag et al., 2020</xref>; <xref ref-type="bibr" rid="ref18">Castanheira et al., 2021</xref>; <xref ref-type="bibr" rid="ref75">Sims et al., 2021</xref>; <xref ref-type="bibr" rid="ref99">Zhou et al., 2021</xref>). More information about different <italic>Lactobacillus</italic> species (<italic>L. jensenii</italic>, <italic>L. gasseri</italic>, <italic>L. crispatus</italic>, <italic>L. inners</italic>) can be found in <xref ref-type="table" rid="tab1">Table 1</xref>.</p>
<p>Lastly, <italic>Ureaplasma</italic> spp. has been reported in both CAN (<xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>) and control samples (<xref ref-type="bibr" rid="ref83">Verhelst et al., 2004</xref>; <xref ref-type="bibr" rid="ref78">Srinivasan and Fredricks, 2008</xref>; <xref ref-type="bibr" rid="ref92">Wu et al., 2021</xref>), as well as in CIN (<xref ref-type="bibr" rid="ref80">Tango et al., 2020</xref>), and BV patients (<xref ref-type="bibr" rid="ref29">Fredricks et al., 2005</xref>; <xref ref-type="bibr" rid="ref82">van de Wijgert et al., 2014</xref>; <xref ref-type="bibr" rid="ref3">Amabebe and Anumba, 2018</xref>; <xref ref-type="bibr" rid="ref40">Klein et al., 2020a</xref>).</p>
<p>The exclusive presence of specific microorganisms in cervical adenocarcinoma cases such as <italic>Fusobacterium</italic> spp., <italic>Peptostreptococcus</italic> spp., <italic>Campylobacter</italic> spp., and <italic>Haemophilus</italic> spp., underscores their potential significance in the pathology of this disease. These unique bacteria could play important roles in the onset and progression of CAN, and their further investigation may provide valuable insights for the development of new diagnostic markers or therapeutic strategies. Understanding the specific functions and influences of these bacteria in CAN is a crucial step toward improving our ability to prevent and treat this form of cervical cancer.</p>
</sec>
</sec>
<sec sec-type="discussion" id="sec9">
<label>7</label>
<title>Discussion</title>
<p>The evolution of sequencing methodologies has paved the way for revolutionary advancements in our understanding of microbiomes and associated diseases, including cervical cancer. This progression can be traced through the various technological tools utilized in the quest for comprehension.</p>
<p>In this context, innovative technologies like NextSeq500 (by Illumina) have been employed for parallel DNA and RNA sequencing to comprehensively detect detectable and actively transcribed DNA and RNA microbes in cervical specimens. The results from such studies suggest that the choice of approach (RNA-Seq, DNA-Seq) can influence the number of transcripts obtained. The focus of current research endeavors is to maximize sequence retention in order to amass a wealth of data that could prove beneficial for multiple investigations reliant on database information.</p>
<p>These technological advancements present an exciting opportunity to delve deeper into the intricacies of cervical cancer and its relationship with the microbiota. The wealth of information that these technologies can provide will undoubtedly fuel further research, and potentially lead to breakthroughs in diagnostic and therapeutic strategies.</p>
<p>The analyses conducted herein strongly advocate for continued biomarker exploration and the need for up-to-date data to inform the development of new strategies to combat cervical cancer.</p>
<p>Our review provides a comprehensive overview of the microbiota associated with the progression of cervical cancer and enumerates several microorganisms implicated in cervicovaginal dysbiosis.</p>
<p>Furthermore, we outline the principal discoveries of past research related to the microbiota present during the CONTROL (healthy) and CAN stages, as well as other conditions such as CIN, SIL, HPV (+), and HPV (&#x2212;). This analysis allowed us to identify promising bacteria frequently reported as biomarkers, suggesting that biomarker identification is a compelling field with potential for numerous research projects.</p>
<p>A consistent presence of HPV was demonstrated in all reported cases of cervical abnormalities. We have identified noteworthy bacterial genera that differ between both CAN and control samples through our investigation. The intersection of these identified bacteria with those suggested as microbiological indicators for cervical health issues in existing research implies a potential connection that needs additional exploration. This understanding of the microbial landscape may provide valuable insights into the pathogenesis of cervical diseases and potentially guide future diagnostic and prevention strategies and treatment plans.</p>
<p>The advent of sequencing techniques has shed new light on our understanding of microbial biomarkers. The rise of this technology holds the promise of facilitating more in-depth studies examining the relationship between cancer and the microbiome. Nevertheless, there is a pressing need for additional research and the standardization of methods for metadata acquisition. This will enhance the scalability of results, ultimately aiming to positively impact the health and wellness of women worldwide.</p>
</sec>
<sec sec-type="author-contributions" id="sec10">
<title>Author contributions</title>
<p>WF: Conceptualization, Investigation, Methodology, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. PA: Conceptualization, Project administration, Supervision, Visualization, Writing &#x2013; review &#x0026; editing. LV: Visualization, Writing &#x2013; review &#x0026; editing. FM: Investigation, Methodology, Project administration, Supervision, Visualization, Writing &#x2013; review &#x0026; editing.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec11">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was supported by the Universidade Federal do Par&#x00E1;, Coordena&#x00E7;&#x00E3;o de Aperfei&#x00E7;oamento de Pessoal de N&#x00ED;vel Superior (CAPES).</p>
</sec>
<ack>
<p>The authors would like to thank CAPES (Coordena&#x00E7;&#x00E3;o de Aperfei&#x00E7;oamento de Pessoal de N&#x00ED;vel Superior) for providing a doctoral scholarship to the author W. M. Fong Amaris. In addition, we would also like to thank the CCAD (Centro de computa&#x00E7;&#x00E3;o de Alto Desempenho da Universidade Federal do Par&#x00E1; - High Performance Computer Center) for their support in developing this research.</p>
</ack>
<sec sec-type="COI-statement" id="sec12">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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