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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2023.1250787</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Pathological and virological insights from an outbreak of European brown hare syndrome in the Italian hare (<italic>Lepus corsicanus</italic>)</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author"><name><surname>Domanico</surname> <given-names>Mariagiovanna</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="fn0003" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2347728/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Cavadini</surname> <given-names>Patrizia</given-names></name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn0003" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2378702/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Nardini</surname> <given-names>Roberto</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/986312/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Cecca</surname> <given-names>Daniele</given-names></name><xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Mastrandrea</surname> <given-names>Giovanni</given-names></name><xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Eleni</surname> <given-names>Claudia</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2378581/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Galietta</surname> <given-names>Valentina</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2379457/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Attili</surname> <given-names>Lorenzo</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2363324/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Pizzarelli</surname> <given-names>Antonella</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Onorati</surname> <given-names>Roberta</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1242259/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Amoruso</surname> <given-names>Cristina</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Stilli</surname> <given-names>Donatella</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Pacchiarotti</surname> <given-names>Giulia</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Merzoni</surname> <given-names>Francesca</given-names></name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Caprioli</surname> <given-names>Andrea</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/361770/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Ricci</surname> <given-names>Ida</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Battisti</surname> <given-names>Antonio</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/287486/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Lavazza</surname> <given-names>Antonio</given-names></name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/369685/overview"/>
</contrib>
<contrib contrib-type="author"><name><surname>Scicluna</surname> <given-names>Maria Teresa</given-names></name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Istituto Zooprofilattico Sperimentale del Lazio e della Toscana &#x201C;M. Aleandri&#x201D; (IZSLT)</institution>, <addr-line>Rome</addr-line>, <country>Italy</country></aff>
<aff id="aff2"><sup>2</sup><institution>Istituto Zooprofilattico Sperimentale della Lombardia e dell&#x2019;Emilia Romagna (IZSLER)</institution>, <addr-line>Brescia</addr-line>, <country>Italy</country></aff>
<aff id="aff3"><sup>3</sup><institution>Segretariato Generale della Presidenza della Repubblica&#x2014;Servizio Tenuta di Castelporziano</institution>, <addr-line>Rome</addr-line>, <country>Italy</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0004">
<p>Edited by: Axel Cloeckaert, Institut National de recherche pour l&#x2019;agriculture, l&#x2019;alimentation et l&#x2019;environnement (INRAE), France</p>
</fn>
<fn fn-type="edited-by" id="fn0005">
<p>Reviewed by: Paulina Nied&#x017A;wiedzka-Rystwej, University of Szczecin, Poland; Margarida Duarte, National Institute for Agrarian and Veterinary Research (INIAV), Portugal</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Antonio Battisti, <email>antonio.battisti@izslt.it</email></corresp>
<fn fn-type="equal" id="fn0003">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>19</day>
<month>10</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1250787</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>06</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>03</day>
<month>10</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Domanico, Cavadini, Nardini, Cecca, Mastrandrea, Eleni, Galietta, Attili, Pizzarelli, Onorati, Amoruso, Stilli, Pacchiarotti, Merzoni, Caprioli, Ricci, Battisti, Lavazza and Scicluna.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Domanico, Cavadini, Nardini, Cecca, Mastrandrea, Eleni, Galietta, Attili, Pizzarelli, Onorati, Amoruso, Stilli, Pacchiarotti, Merzoni, Caprioli, Ricci, Battisti, Lavazza and Scicluna</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>European brown hare syndrome (EBHS) is a highly contagious and fatal viral disease, mainly affecting European brown hares (<italic>Lepus europaeus</italic>). The etiological agent, EBHS virus (EBHSV), belongs to the <italic>Lagovirus</italic> genus within the <italic>Caliciviridae</italic> family. The Italian hare (<italic>Lepus corsicanus</italic>) is endemic to Central-Southern Italy and Sicily and is classified as a vulnerable species. <italic>L. corsicanus</italic> is known to be susceptible to EBHS, but virological data available is scarce due to the few cases detected so far. In this study, we describe the occurrence of EBHS in two free-ranging <italic>L. corsicanus,</italic> found dead in a protected area of Central Italy. The two hares were identified as <italic>L. corsicanus</italic> using phenotypic criteria and confirmed through mitochondrial DNA analysis. Distinctive EBHS gross lesions were observed at necropsy and confirmed by subsequent histological examination. EBHSV was detected in the livers of the two animals initially using an antigen detection ELISA, followed by an EBHSV-specific reverse transcription-PCR, thus confirming the viral infection as the probable cause of death. The EBHS viruses detected in the two hares were identical, as based on blast analysis performed for the VP60 sequences and showed 98.86% nucleotide identity and 100% amino acid identity with strain EBHSV/GER-BY/EI97.L03477/2019, isolated in Germany in 2019. Phylogenetic analysis places our virus in group B, which includes strains that emerged after the mid-1980s. This study supports previous reports of EBHS in <italic>L. corsicanus</italic> and further expands the knowledge of the pathological and virological characteristics of the etiological agent. The ability of EBHSV to cause a fatal disease in the Italian hare represents a serious threat to the conservation of this vulnerable species, especially in populations kept in enclosed protected areas.</p>
</abstract>
<kwd-group>
<kwd>European brown hare syndrome</kwd>
<kwd>EBHSV</kwd>
<kwd><italic>Lepus corsicanus</italic></kwd>
<kwd>hare</kwd>
<kwd>outbreak</kwd>
<kwd><italic>Lagovirus</italic></kwd>
<kwd>virus characterization</kwd>
<kwd>Italy</kwd>
</kwd-group>
<counts>
<fig-count count="4"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="50"/>
<page-count count="9"/>
<word-count count="6652"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Infectious Agents and Disease</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1"><label>1.</label>
<title>Introduction</title>
<p>European brown hare syndrome (EBHS) is a highly contagious and fatal viral disease mainly affecting European brown hares (<italic>Lepus europaeus</italic>) (<xref ref-type="bibr" rid="ref15">Fr&#x00F6;lich and Lavazza, 2007</xref>; <xref ref-type="bibr" rid="ref5">Capucci et al., 2021</xref>; <xref ref-type="bibr" rid="ref13">Fitzner et al., 2022</xref>). The disease was known to occur in brown hares since the early 1980s and was diagnosed in free-ranging and farmed hare populations across Europe, including Italy, where it is endemic (<xref ref-type="bibr" rid="ref23">Lavazza and Vecchi, 1989</xref>; <xref ref-type="bibr" rid="ref17">Gavier-Wid&#x00E9;n and M&#x00F6;rner, 1991</xref>; <xref ref-type="bibr" rid="ref35">Poli et al., 1991</xref>; <xref ref-type="bibr" rid="ref10">Duff et al., 1994</xref>; <xref ref-type="bibr" rid="ref41">Scicluna et al., 1994</xref>; <xref ref-type="bibr" rid="ref8">Chiari et al., 2014</xref>). EBHS generally occurs in an acute form with a high mortality rate, between 90% to 100% in adult animals of na&#x00EF;ve populations, strongly impacting on the population dynamics (<xref ref-type="bibr" rid="ref47">Wirblich et al., 1994</xref>). Acutely affected hares often die suddenly of hepatic failure and necrosis without overt clinical signs (<xref ref-type="bibr" rid="ref17">Gavier-Wid&#x00E9;n and M&#x00F6;rner, 1991</xref>; <xref ref-type="bibr" rid="ref50">Zanni et al., 1993</xref>; <xref ref-type="bibr" rid="ref22">Lavazza and Neimanis, 2021</xref>; <xref ref-type="bibr" rid="ref48">World Organisation for Animal Health (WOAH), 2021</xref>). Diffuse hemorrhagic lesions and liver degeneration characterize the acute form of the disease. Hares younger than 2&#x2013;3&#x2009;months old are considered resistant to EBHS as they do not manifest clinical signs and mortality, but develop antibodies (<xref ref-type="bibr" rid="ref50">Zanni et al., 1993</xref>; <xref ref-type="bibr" rid="ref11">Edwards et al., 2000</xref>; <xref ref-type="bibr" rid="ref22">Lavazza and Neimanis, 2021</xref>). In endemic areas, virus circulation is correlated to hare population density, animal age and season (<xref ref-type="bibr" rid="ref41">Scicluna et al., 1994</xref>; <xref ref-type="bibr" rid="ref33">Paci et al., 2011</xref>; <xref ref-type="bibr" rid="ref8">Chiari et al., 2014</xref>). Where EBHS is endemic, mortality rates are usually lower due to pre-existing population immunity (<xref ref-type="bibr" rid="ref48">World Organisation for Animal Health (WOAH), 2021</xref>).</p>
<p>EBHS is transmitted by the oral-faecal route through direct or indirect contact with infected sources. Carnivores, insects, birds, and humans can facilitate virus spread, and insects can act as mechanical vectors, but no reservoir hosts other than lagomorphs have been definitively identified. Indirect transmission occurs through contaminated fomites, including equipment, cages, clothes, vehicles, and utensils, likely occur. Infection via contaminated green forage and vegetation is also possible, and lagomorph carcasses are believed to contribute to the environmental persistence of the virus (<xref ref-type="bibr" rid="ref48">World Organisation for Animal Health (WOAH), 2021</xref>).</p>
<p>The etiological agent, EBHS virus (EBHSV), belongs to the <italic>Lagovirus</italic> genus of the <italic>Caliciviridae</italic> family and has a single-stranded RNA of positive polarity, approximately 7.5&#x2009;kb in length (<xref ref-type="bibr" rid="ref6">Capucci et al., 1991</xref>; <xref ref-type="bibr" rid="ref35">Poli et al., 1991</xref>; <xref ref-type="bibr" rid="ref47">Wirblich et al., 1994</xref>). The genome contains two open reading frames (ORFs): ORF1 encodes a polyprotein, which is processed by virus-encoded 3C-like protease (3CLpro) for the release of mature non-structural proteins and the capsid protein VP60; ORF2 encodes a minor structural protein (VP10) (<xref ref-type="bibr" rid="ref24">Le Gall et al., 1996</xref>). Phylogenetically, two lineages are described: group A, which persisted until 1989, when it apparently disappeared; group B, which appeared in the mid-1980s and contains the most recently detected strains (<xref ref-type="bibr" rid="ref27">Lopes et al., 2014</xref>). Previous studies showed a high genetic homogeneity of EBHSV strains from different European countries despite their geographical occurrence and time of discovery. These strains are phylogenetically closely related (over 97% homology), likely confirming the slow evolutionary dynamics of this lagovirus species (<xref ref-type="bibr" rid="ref12">Fitzner et al., 2021</xref>).</p>
<p>The Italian hare (<italic>Lepus corsicanus</italic>) is endemic to Central-Southern Italy and Sicily and is classified as Vulnerable according to the International Union for Conservation of Nature in its Red List (<xref ref-type="bibr" rid="ref37">Randi and Riga, 2019</xref>). Currently, the most conspicuous populations live in protected areas (<xref ref-type="bibr" rid="ref3">Buglione et al., 2020</xref>). <italic>L. corsicanus</italic> was included among the lagomorph species susceptible to EBHSV (<xref ref-type="bibr" rid="ref22">Lavazza and Neimanis, 2021</xref>; <xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>). Sporadic disease cases and serological evidence of specific antibodies were repeatedly reported in free-ranging <italic>L. corsicanus</italic> from Northern Italy (<xref ref-type="bibr" rid="ref18">Guberti et al., 2000</xref>; Capucci, personal communication). Nevertheless, extensive genetic identification and characterization of the EBHSV strains detected from Italian hares and genetic species identification of the positive hares have yet to be performed. In addition, <italic>L. corsicanus</italic> is also susceptible to RHDV2 (<xref ref-type="bibr" rid="ref4">Camarda et al., 2014</xref>), a lagovirus which can cause mortality and lesions overlapping those caused by EBHSV, therefore requiring a differential diagnosis.</p>
<p>The present study aims to describe an outbreak of EBHS involving two free-ranging <italic>L. corsicanus</italic> in a protected area of Central Italy and to investigate the viral phylogenetic relationships to reference EBHSV strains identified previously in Italy and Europe.</p>
</sec>
<sec sec-type="materials|methods" id="sec2"><label>2.</label>
<title>Materials and methods</title>
<sec id="sec3"><label>2.1.</label>
<title>Hare population and location</title>
<p>In January 2023, two death adult female wild hares (ID: Rm23-1 and Rm23-2), provisionally identified as <italic>L. corsicanus</italic> according to the morphological and phenotypic criteria (<xref ref-type="bibr" rid="ref38">Riga et al., 2001</xref>; <xref ref-type="bibr" rid="ref40">Rugge et al., 2009</xref>), were found inside the protected area of Castelporziano Presidential Estate (CPE) (<xref rid="fig1" ref-type="fig">Figure 1</xref>). The two dead hares were found 1&#x2009;week apart in the exact geographical location of the CPE. The CPE is located in Central Italy at around 25&#x2009;km from the centre of Rome (41&#x00B0;44&#x2032;037.83&#x2033;00&#x2009;N. 12&#x00B0;24&#x2032;02.20&#x2033;00 E.) and extends over a surface of 59&#x2009;km<sup>2</sup> (5,892 hectares). It englobes most coastal ecosystems typical of the Mediterranean (Latium region, Ecoregion: Mediterranean forests, woodlands, and scrub). Most of the CPE consists of lowland hygrophilous woodlands featuring evergreen and deciduous oak trees and, more specifically, hygrophilous species, especially near the wetlands. Inside the CPE hunting was prohibited since as early as 1977. In 1999, the CPE was assigned the status of Natural State Reserve and subjected to protection measures in line with those protecting natural areas. Regarding hares, the CPE hosts a steady <italic>L. corsicanus</italic> population (latest estimated hare population density of 8.66 hares/km<sup>2</sup> performed in 2015 based on spotlight counts) with no reported presence of <italic>L. europaeus</italic> (<xref ref-type="bibr" rid="ref45">Trocchi and Riga, 2001</xref>; <xref ref-type="bibr" rid="ref14">Freschi et al., 2022</xref>) and apparently no contact with exogenous lagomorph populations. Considering the nature and behaviour of the species involved, although the protected area is fenced, this does not guarantee complete isolation from the brown hare population, which is abundant in the surrounding areas.</p>
<fig position="float" id="fig1"><label>Figure 1</label>
<caption>
<p>Map of the Castel Porziano Estate, Rome, Italy. At the upper right corner location within Italy and location within the Latium Region are showed. Red lines represent the borders.</p>
</caption>
<graphic xlink:href="fmicb-14-1250787-g001.tif"/>
</fig>
<p>Owing to the ongoing research activities, including enhanced passive mortality surveillance of wild animals in the CPE, following the finding of the two hare carcasses, these were submitted to the diagnostic laboratories of the Istituto Zooprofilattico Sperimentale del Lazio e della Toscana &#x201C;M. Aleandri&#x201D; (IZSLT) to determine the possible causes of death.</p>
</sec>
<sec id="sec4"><label>2.2.</label>
<title>Pathology, sample collection, histopathology, bacteriology and parasitology</title>
<p>A complete necropsy and examination of the two hare carcasses were performed. Samples were taken from several organs, namely liver, lung, trachea, brain, kidney, spleen, heart, uterus, and intestine content; parts were fixed in 10% neutral buffered formalin for histopathological examination, and parts were subjected to standard bacteriological and parasitological analyses. Briefly, for bacteria isolation and identification, tissue/organs were cultured on Columbia agar supplemented with 5% sheep blood (VWR, Belgium) and brain heart infusion broth; following incubation for 24 to 48&#x2009;h under aerobic and microaerobic (10% CO<sub>2</sub>) conditions at 37&#x00B0;C, growth colonies were subcultured and pure colonies screened by means of standard techniques including colony morphology, Gram staining, catalase test, oxidase test, and biochemically identified at species level with API test kits (bioM&#x00E9;rieux, France). Intestine content was screened for the presence of <italic>Salmonella</italic> spp. following international recommendations (<xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>), as previously described (<xref ref-type="bibr" rid="ref1">Alba et al., 2013</xref>).</p>
<p>Parasites were screened by macroscopic examination of the intestinal content to detect the presence of proglottids, nematodes and/or fragments of parasites. Samples were subsequently analyzed microscopically by fresh smear and flotation method using saturated NaCl solution (specific gravity 1.2), to evaluate the presence of helminth eggs and/or protozoan (oo) cysts (<xref ref-type="bibr" rid="ref39">Riggio et al., 2013</xref>).</p>
<p>Livers were also submitted for lagovirus detection by laboratory diagnositic methods, considering the overlapping lesions for RHDV2 and EBHS. Muscle and liver samples were collected to confirm the hare species as <italic>L. corsicanus</italic>, using DNA molecular analyses.</p>
</sec>
<sec id="sec5"><label>2.3.</label>
<title>Molecular identification of hares at the species level</title>
<p>Analysis of the mitochondrial control region (CR) was employed to confirm the hare species identification. Total genomic DNA was isolated from tissues (liver, muscle) using QIAamp DNA Mini Kit (Qiagen, Hilden, Germany), following the manufacturer&#x2019;s instructions. DNA was diluted in 100&#x2009;&#x03BC;L RNAse-free molecular grade water. A 230&#x2009;bp fragment in a highly variable region of the mitochondrial CR was amplified through PCR and sequenced (<xref ref-type="bibr" rid="ref34">Pierpaoli et al., 1999</xref>). Primers were newly designed using the Primer3 web tool<xref rid="fn0001" ref-type="fn"><sup>1</sup></xref> (CR_lepus: F 5&#x2032; CATCAGCACCCAAAGCTGAA 3&#x2032;; R 5&#x2032; GCAGGGAATGTGCTATGTCCTA 3&#x2032;). PCR conditions were the following: an initial activation step at 94&#x00B0;C for 3&#x2009;min; 38&#x2009;cycles at 94&#x00B0;C for 30&#x2009;s, 56&#x00B0;C for 30&#x2009;s, 72&#x00B0;C for 30&#x2009;s, followed by a final extension of 5&#x2009;min at 72&#x00B0;C. Both positive and negative extraction and amplification controls were included. Sequencing was performed using the Applied Biosystems BigDye Terminator Cycle Sequencing Kit (Thermo Fisher Scientific, Waltham, MA, United States), and DNA products were loaded on Applied Biosystems ABI 3130 Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, United States). Sequences were checked manually and aligned using Geneious Prime 2022<xref rid="fn0002" ref-type="fn"><sup>2</sup></xref> with 15 available online sequences of <italic>L. corsicanus</italic> and <italic>L. europaeus</italic>.</p>
</sec>
<sec id="sec6"><label>2.4.</label>
<title>EBHSV detection</title>
<p>Liver homogenates of the two hares were initially analyzed for the presence of lagoviruses, EBHSV and rabbit hemorrhagic disease viruses using a sandwich ELISA followed by a second sandwich ELISA to discriminate between RHDV2 and EBHSV. These methods were set up and validated by the WOAH Reference Laboratory for RHD at the Istituto Zooprofilattico Sperimentale della Lombardia e dell&#x2019;Emilia Romagna (IZSLER) (<xref ref-type="bibr" rid="ref6">Capucci et al., 1991</xref>; <xref ref-type="bibr" rid="ref25">Le Gall-Recul&#x00E9; et al., 2013</xref>; <xref ref-type="bibr" rid="ref36">Puggioni et al., 2013</xref>; <xref ref-type="bibr" rid="ref4">Camarda et al., 2014</xref>) and are described in detail in the WOAH Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (<xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>).</p>
<p>Briefly, the first sandwich ELISA is based on RHDV-EBHSV specific IgG as catcher adsorbed onto the solid phase and a pool of mouse-derived MAbs anti-lagoviruses followed by incubation with rabbit anti-mouse IgG HRP as tracer. The test sample consists of 10% w/v liver extract in phosphate buffer solution, clarified by low-speed centrifugation and tested at two dilutions (1/5 and 1/30) as previously described (<xref ref-type="bibr" rid="ref6">Capucci et al., 1991</xref>; <xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>). The second ELISA, the &#x201C;typing ELISA,&#x201D; employs a panel of MAbs able to discriminate between RHDV2 or EBHSV (<xref ref-type="bibr" rid="ref25">Le Gall-Recul&#x00E9; et al., 2013</xref>; <xref ref-type="bibr" rid="ref36">Puggioni et al., 2013</xref>; <xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>).</p>
<p>The presence of EBHSV and RHDV2 RNA was also tested by RT-PCR. The total RNA was extracted from the liver using Trizol Reagent (Qiagen, Hilden, Germany), according to the manufacturer&#x2019;s instructions. Specific RT-PCR for the two viruses (<xref ref-type="bibr" rid="ref46">Velarde et al., 2017</xref>; <xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>) were carried out using the Superscript III One-Step RT-PCR kit (Invitrogen, Carlsbad, CA, United States).</p>
</sec>
<sec id="sec7"><label>2.5.</label>
<title>EBHSV sequencing and phylogenetic analysis</title>
<p>To determine the VP60 sequences of the field isolates, amplification by reverse transcription (RT)-PCR of four overlapping genome fragments was conducted using primers specific to the EBHSV genome (<xref rid="tab1" ref-type="table">Table 1</xref>). PCR amplicons were visualized in 2% agarose gel, purified (Nucleo Spin PCR and Gel Clean-up, Machery-Nagel, Germany) and directly sequenced in both directions using the ABI Prism BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI 35000XL Genetic Analyzer (Applied Biosystem, Carlsbad, CA, United States). Contigs assembly and genome sequence analysis were performed using Seqman NGen DNASTAR version 11.2.1 (DNASTAR, Madison, WI, United States). For comparative analysis of nucleotide sequences of EBHSV strains, BLASTn software was used (accessed on May 2023). The phylogenetic tree was constructed based on 47 complete VP60 sequences (1731&#x2009;bp) of lagoviruses by using the maximum likelihood (ML) method and general time reversible model, and the analyses were conducted in MEGA X (<xref ref-type="bibr" rid="ref31">Nei and Kumar, 2000</xref>; <xref ref-type="bibr" rid="ref20">Kumar et al., 2018</xref>). Branch support was estimated using 1,000 bootstrap replicates. The phylogenetic relationship among the sequences analyzed was considered reliable when the bootstrap value was higher than 70%.</p>
<table-wrap position="float" id="tab1"><label>Table 1</label>
<caption>
<p>Primers used for sequencing the VP60 of EBHSV.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Primers</th>
<th align="left" valign="top">Sequence(5&#x2032;-3&#x2032;)</th>
<th align="center" valign="top">Position nt<xref rid="tfn1" ref-type="table-fn"><sup>a</sup></xref></th>
<th align="center" valign="top">Ta</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">EBHS-5F</td>
<td align="left" valign="top">CGACAGGAAGAGGATCGTCT</td>
<td align="char" valign="top" char="&#x2013;">5,231&#x2013;5,250</td>
<td align="center" valign="top" rowspan="2">55&#x00B0;C</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-7R</td>
<td align="left" valign="top">AAACCTGGGGCTGGACCAGC</td>
<td align="char" valign="top" char="&#x2013;">6,127&#x2013;6,146</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-530F</td>
<td align="left" valign="top">CCTGAAATGTACCACCCAAC</td>
<td align="char" valign="top" char="&#x2013;">5,793&#x2013;5,812</td>
<td align="center" valign="top" rowspan="2">52&#x00B0;C</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-911R</td>
<td align="left" valign="top">CAATGGTGTTGGTTGCACT</td>
<td align="char" valign="top" char="&#x2013;">6,192&#x2013;6,210</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-2F</td>
<td align="left" valign="top">CTGGAATATGAATGGTGAAACC</td>
<td align="char" valign="top" char="&#x2013;">6,101&#x2013;6,122</td>
<td align="center" valign="top" rowspan="2">50&#x00B0;C</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-3R</td>
<td align="left" valign="top">ATCACCAGTCCTCCGCACCAC</td>
<td align="char" valign="top" char="&#x2013;">6,666&#x2013;6,686</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-1191F</td>
<td align="left" valign="top">AAGTCGATCTACGGGGTTGCC</td>
<td align="char" valign="top" char="&#x2013;">6,474&#x2013;6,494</td>
<td align="center" valign="top" rowspan="2">50&#x00B0;C</td>
</tr>
<tr>
<td align="left" valign="top">EBHS-1786R</td>
<td align="left" valign="top">GCTCCAGCCAATGTTAGTCCTAGA</td>
<td align="char" valign="top" char="&#x2013;">7,017&#x2013;7,040</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn1"><label>a</label>
<p>Nucleotide position based on the EBHSV sequence NC_002615.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>In addition, to investigate a possible recombination event, the non-structural portion of the EBHSV_Rm23-1 genome was sequenced, and a 5,625&#x2009;nt fragment was amplified by RT-PCR using HaCV-AF/Rab2 primers (<xref ref-type="bibr" rid="ref43">Strive et al., 2009</xref>; <xref ref-type="bibr" rid="ref7">Cavadini et al., 2021</xref>). After purification from agarose gels, the amplicon was subjected to NGS sequencing using the Illumina platform (Illumina, Inc., San Diego, CA, United States) and the full genome was subjected to an RdP4 analysis (<xref ref-type="bibr" rid="ref29">Martin et al., 2015</xref>).</p>
</sec>
</sec>
<sec sec-type="results" id="sec8"><label>3.</label>
<title>Results</title>
<sec id="sec9"><label>3.1.</label>
<title>Pathology, histopathology, bacteriology and parasitology</title>
<p>At necropsy, the hare carcasses presented a good conservation status and body conditions and no apparent external lesions or signs of predation. Macroscopically, the first hare showed blood spilling from the vulva, diffuse congestion and hemorrhages in the tracheal mucosa, mild discolouration and degeneration of hepatic parenchyma, kidney congestion, diffuse congestion, and presence of blood in the left uterine horn. Undigested food was found inside the stomach. The second hare was in lactation and showed blood spilling from the left nostril, tracheal mucosa congestion with multifocal hemorrhages (<xref rid="fig2" ref-type="fig">Figure 2</xref>), mild hepatic parenchyma degeneration, splenomegaly, kidneys congestion with cortical petechial hemorrhages and areas of congestion in the left lung. Undigested food was found inside the stomach, showing mild gastric mucosa congestion. Enteric or brain lesions were absent in both animals. The main histopathological finding was liver parenchyma necrosis, associated with periportal hepatitis with lymphoplasmacytic infiltration and rare neutrophils (<xref rid="fig3" ref-type="fig">Figure 3</xref>). In addition, kidneys presented diffuse cortical tubulonephrosis, with the formation of multiple small cysts containing amorphous eosinophilic material (a sign of proteinuria), associated with mild membranous glomerulonephritis and vascular congestion. One of the animals (hare ID Rm23-2) also showed areas of vascular congestion in the lung and moderate follicular reactive hyperplastic splenitis, with congested and oedematous red pulp. <italic>Streptococcus gallolyticus</italic> was isolated from the trachea, uterus and intracardiac blood clot and <italic>Acinetobacter lwofii</italic> from the intracardiac blood clot of the first hare. In contrast, for the second hare, all bacteriological cultures were negative. The parasitological examination of the intestine contents performed by flotation detected nematodes and protozoa, namely <italic>Passalurus ambiguus</italic> and <italic>Eimeria</italic> sp. in the first hare, <italic>Trichostrongylus retortaeformis</italic> and <italic>Eimeria</italic> sp. in the second.</p>
<fig position="float" id="fig2"><label>Figure 2</label>
<caption>
<p>Hare 2. Trachea. Congestion of the tracheal mucosa with multifocal hemorrhages.</p>
</caption>
<graphic xlink:href="fmicb-14-1250787-g002.tif"/>
</fig>
<fig position="float" id="fig3"><label>Figure 3</label>
<caption>
<p>Hare 2. Liver. Multiple foci of hepatocyte necrosis (asterisks). Hematoxylin and eosin stain, 20&#x00D7;.</p>
</caption>
<graphic xlink:href="fmicb-14-1250787-g003.tif"/>
</fig>
</sec>
<sec id="sec10"><label>3.2.</label>
<title>EBHSV detection, sequencing and phylogenetic analysis</title>
<p>The livers of both hares tested positive using EBHS sandwich ELISA, and the presence of EBHSV RNA and the absence of RHDV2 were confirmed using the specific RT-PCR amplification. Blast analysis performed on the VP60 (1731&#x2009;bp) sequences of EBHSV_Rm23-1 and Rm23-2 showed they had a 98.86% nucleotide identity and 100% amino acid identity with the strain EBHSV/GER-BY/EI97.L03477/2019 isolated in Germany in 2019. The phylogenetic analysis conducted on the VP60 sequences showed that the EBHSV_Rm23 strain clustered within the GII.1 genotype, group B, which includes strains that emerged after the mid-1980s (<xref rid="fig4" ref-type="fig">Figure 4</xref>). The EBHSV_Rm23-1 genome sequence was deposited in GenBank with accession number OR096234. The RdP4 analysis performed on the full genome sequence of the EBHSV_Rm23-1 revealed no apparent recombination event with other known lagoviruses (data not shown) and showed a 98.56% nucleotide identity with the full genome of EBHSV/GER-BY/EI97.L03477/2019.</p>
<fig position="float" id="fig4"><label>Figure 4</label>
<caption>
<p>Phylogenetic tree performed with ML-GTR&#x2009;+&#x2009;G&#x2009;+&#x2009;I. The sequence fragments correspond to 47 complete VP60 sequences (1731&#x2009;bp) of <italic>Lagovirus</italic> retrieved from GenBank. Bootstrap values greater than 70% are shown. Taxa organization of the <italic>Lagovirus</italic> genus (Rabbit <italic>Lagovirus</italic>: GI; Hare <italic>Lagovirus</italic>: GII) is indicated as proposed by <xref ref-type="bibr" rid="ref26">Le Pendu et al. (2017)</xref>.</p>
</caption>
<graphic xlink:href="fmicb-14-1250787-g004.tif"/>
</fig>
</sec>
<sec id="sec11"><label>3.3.</label>
<title>Hares genetic identification at the species level</title>
<p>Mitochondrial CR sequences obtained from both hares were identical and clustered within the <italic>L. corsicanus</italic> group. Sequences matched 100% with a haplotype already reported within the <italic>L. corsicanus</italic> species from Central Italy by <xref ref-type="bibr" rid="ref34">Pierpaoli et al. (1999)</xref> (Genbank Accession number: AF157424).</p>
</sec>
</sec>
<sec sec-type="discussion" id="sec12"><label>4.</label>
<title>Discussion</title>
<p>EBHSV was first detected in European brown hares (<italic>L. europaeus</italic>), and this should be considered the elective host species. However, it is less frequently found also in mountain hares (<italic>L. timidus</italic>) (<xref ref-type="bibr" rid="ref23">Lavazza and Vecchi, 1989</xref>; <xref ref-type="bibr" rid="ref17">Gavier-Wid&#x00E9;n and M&#x00F6;rner, 1991</xref>; <xref ref-type="bibr" rid="ref15">Fr&#x00F6;lich and Lavazza, 2007</xref>). The same EBHSV strains can indistinctly infect and cause disease in different hare species, even living in the same areas (<xref ref-type="bibr" rid="ref15">Fr&#x00F6;lich and Lavazza, 2007</xref>).</p>
<p>This study describes the molecular characterization of an EBHSV strain detected in two Italian hares (<italic>L. corsicanus</italic>). These results reinforce and complement the already known data regarding the susceptibility of <italic>L. corsicanus</italic> to infection with EBHSV (<xref ref-type="bibr" rid="ref18">Guberti et al., 2000</xref>) and extend the case history reports of this fatal disease in this species. On the other hand, EBHS was never reported in other European hare species, such as the Iberian hare (<italic>L. granatensis</italic>) and the Broom hare (<italic>L. castroviejoi</italic>), both present mainly in the Iberian Peninsula and in the Cape hare (<italic>L. capensis</italic> var. <italic>mediterraneus</italic>), present in Sardinia (Italy) (<xref ref-type="bibr" rid="ref36">Puggioni et al., 2013</xref>; <xref ref-type="bibr" rid="ref46">Velarde et al., 2017</xref>). In addition, field and experimental data demonstrated that the eastern cottontail (<italic>Sylvilagus floridanus</italic>) is susceptible to infection with EBHSV (but not RHDV), occasionally causing EBHS-like disease. So far, infection of the eastern cottontail with EBHSV is considered a spillover event, as this species is deemed a dead-end host, unless new evidence is collected to support an active role in the epidemiology of EBHSV (<xref ref-type="bibr" rid="ref21">Lavazza et al., 2015</xref>).</p>
<p>In our study, gross pathological and histopathological findings in the two hares investigated were consistent with those described by other authors as typical of lagovirus diseases, mainly characterized by hemorrhages and tracheal mucosa congestion, degeneration of hepatic tissue with necrosis, splenomegaly, lung and kidney congestion (<xref ref-type="bibr" rid="ref28">Marcato et al., 1991</xref>; <xref ref-type="bibr" rid="ref50">Zanni et al., 1993</xref>; <xref ref-type="bibr" rid="ref16">Gavier-Wid&#x00E9;n, 1994</xref>; <xref ref-type="bibr" rid="ref41">Scicluna et al., 1994</xref>; <xref ref-type="bibr" rid="ref46">Velarde et al., 2017</xref>). The good body condition of both animals and the presence of food in the stomach suggest a peracute or acute form of infection. The isolation of bacteria (<italic>Streptococcus gallolyticus</italic> and <italic>Acinetobacter lwofii</italic>) from one of the two hares is probably attributable to secondary infections or post-mortem dissemination, while the detected parasites represent a normal finding in free-living hares. Taken together, acute death, gross and histopathological lesions, positive ELISA and PCR results, in the absence of other evident causes of death, demonstrate that EBHS is the most probable cause of death for both animals. Furthermore, the diagnostic approach used allowed to confirm the presence of a lagovirus in the organs examined, identifying it as EBHSV (EBHSV_Rm23), while ruling out the possibility that it could be RHDV2. This latter virus, which emerged in 2010, is also capable of infecting several other species of hares and other lagomorphs and was repeatedly identified in recent years in Europe, Australia, and the Americas (<xref ref-type="bibr" rid="ref36">Puggioni et al., 2013</xref>; <xref ref-type="bibr" rid="ref4">Camarda et al., 2014</xref>; <xref ref-type="bibr" rid="ref19">Hall et al., 2017</xref>; <xref ref-type="bibr" rid="ref46">Velarde et al., 2017</xref>; <xref ref-type="bibr" rid="ref32">Neimanis et al., 2018</xref>; <xref ref-type="bibr" rid="ref2">Asin et al., 2021</xref>).</p>
<p>The phylogenetic analysis conducted, based on the VP60 sequences, showed that the OR096234 strain belongs to group B, clustering with the GII.1 (EBHSV) genotype, showing 98.86% nucleotide identity and 100% amino acid identity with a strain isolated in Germany in 2019 (<xref ref-type="bibr" rid="ref44">Szillat et al., 2020</xref>). These findings are consistent with previous VP60 sequence analyses of European EBHSV strains (<xref ref-type="bibr" rid="ref27">Lopes et al., 2014</xref>; <xref ref-type="bibr" rid="ref12">Fitzner et al., 2021</xref>), with group B representing the totality of the strains detected recently in Europe, while group A viruses, which encompasses the oldest strains from the Scandinavian Peninsula, disappeared in the late 1980s.When dealing with lagovirus diseases, it is always difficult to trace the origin of the infection, due to the multiplicity of ways, especially indirect, by which the virus is transmitted. Likely, we can rule out that the virus can &#x201C;persist&#x201D; in an environment without giving any sign of mortality for years. In fact, to date, the existence of healthy carrier status among lagomorphs or asymptomatic hosts was never demonstrated, as we exclude the cottontail species presence in the CPE, considered as potential spillover species. On the other hand, the virus can also be indirectly transmitted by animated subjects (e.g., predators, both mammals and birds, insects, and humans) and fomites. Considering that in 2023 in Central Italy cases of EBHS were numerous, both in captive and in wild animals, we can consider one of these indirect modes of transmission as the probable source of infection, explaining the epidemiology of this outbreak. Although the entire CPE is fenced, this is unlikely to act as a complete physical separation, considering the epidemiology of lagoviruses and the host species, able to jump over 1.80 meters. It is therefore not possible to prevent contact between the species inside the reserve and those outside, and the possible passage of any EBHSV infection in a context where susceptible species are present. This is precisely the situation that is currently observed in Central-Southern Italy, at least if we refer to the numerous cases recently diagnosed in free-living brown hares (Lavazza, personal communication). It will be interesting to genetically compare our strain with those that have been recently causing cases in Italy, when those sequences will be made available. Our strain is related with a virus lineage consisting of Swedish and French strains discovered from 2008 to 2014, and in particular to newer German strains identified from 2019 to 2020 (<xref ref-type="bibr" rid="ref44">Szillat et al., 2020</xref>), confirming the successful dispersal and persistence of this lineage throughout Europe (<xref ref-type="bibr" rid="ref27">Lopes et al., 2014</xref>). High similarities between strains detected in different countries is quite a common evidence for most of the lagoviruses. This is basically due to the low EBHSV genetic variability, and its slow evolutionary dynamics compared with other lagovirus species, such as RHDV (<xref ref-type="bibr" rid="ref27">Lopes et al., 2014</xref>; <xref ref-type="bibr" rid="ref12">Fitzner et al., 2021</xref>). Precise definition of the origin of the virus is almost impossible, considering the several ways of transmission described for lagoviruses, however the hypothesis of indirect transmission is the most likely. Data available from some European countries collected during the last 50&#x2009;years show a drastic decline in the abundance of free-living brown and mountain hares due to environmental and demographic reasons, heavy predation, anthropogenic factors such as poaching, and the occurrence of infectious diseases (<xref ref-type="bibr" rid="ref11">Edwards et al., 2000</xref>; <xref ref-type="bibr" rid="ref42">Smith et al., 2005</xref>). In Europe, a constant decline of the <italic>L. europaeus</italic> and <italic>L. timidus</italic> populations was indeed reported due to EBHSV outbreaks (<xref ref-type="bibr" rid="ref17">Gavier-Wid&#x00E9;n and M&#x00F6;rner, 1991</xref>; <xref ref-type="bibr" rid="ref30">Morisse et al., 1991</xref>; <xref ref-type="bibr" rid="ref11">Edwards et al., 2000</xref>; <xref ref-type="bibr" rid="ref12">Fitzner et al., 2021</xref>). A threat for hare populations is also represented by RHDV2, which was demonstrated to be able to overcome the interspecies barrier and cause a fatal disease with clinical symptoms similar to EBHS in various hare species, as well as infecting non-lagomorph species (<xref ref-type="bibr" rid="ref49">World Organisation for Animal Health (WOAH), 2022</xref>). RHDV2 was already reported to infect <italic>L. corsicanus</italic>, although the virulence of RHDV2 is clearly reduced when compared with the far higher mortality observed in <italic>Oryctolagus cuniculus</italic> (<xref ref-type="bibr" rid="ref4">Camarda et al., 2014</xref>).</p>
<p><italic>Lepus corsicanus</italic> is classified as vulnerable according to the International Union for Conservation of Nature in its Red List (<xref ref-type="bibr" rid="ref37">Randi and Riga, 2019</xref>). The distribution of this endemic species was subjected in the last decades to a substantial contraction accompanied by a significant reduction in the population density, mainly due to habitat alterations, low numbers and fragmented populations, and ecological competition with the sympatric European hare (<xref ref-type="bibr" rid="ref3">Buglione et al., 2020</xref>; <xref ref-type="bibr" rid="ref14">Freschi et al., 2022</xref>). The occurrence of EBHS in a protected enclosed area, such as the CPE, represents an important threat to the conservation of this vulnerable species that could possibly lead to the point of extinction of the local population. This event would have consequences on the maintenance of the balance and biodiversity in the local wildlife. Although control of the disease in such a situation is difficult, an effort to maintain a disease-free sub-population could be made by isolating some CPE zones or groups of hares combined with the implementation of a vaccination programme, using autovaccines (<xref ref-type="bibr" rid="ref9">Drews et al., 2011</xref>; <xref ref-type="bibr" rid="ref48">World Organisation for Animal Health (WOAH), 2021</xref>).</p>
</sec>
<sec sec-type="conclusions" id="sec13"><label>5.</label>
<title>Conclusion</title>
<p>In this work, we described the anatomo-histopathological lesions and reported the genomic characterization of the EBHSV strain causing an outbreak involving two free-ranging Italian hares (<italic>L. corsicanus</italic>) in a protected area of Central Italy. The identified strain belonged the group B and was phylogenetically related to other EBHSV strains circulating in Europe in <italic>L. europaeus</italic>.</p>
<p>Our findings further confirm that EBHSV can cause fatal disease in the Italian hare, thus representing an important threat to the conservation of this vulnerable species, especially in populations kept in enclosed protected areas.</p>
</sec>
<sec sec-type="data-availability" id="sec14">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found at: <ext-link xlink:href="https://www.ncbi.nlm.nih.gov/genbank/" ext-link-type="uri">https://www.ncbi.nlm.nih.gov/genbank/</ext-link>, OR096234.</p>
</sec>
<sec sec-type="author-contributions" id="sec15">
<title>Author contributions</title>
<p>AB, AC, CE, MD, MS, PC, and RN: conceptualization. AP, CA, CE, DS, FM, IR, MD, PC, RO, and VG: investigation. DC and GM: resources. MD and PC: data curation. AC, GP, IR, LA, MD, PC, and VG: writing-original draft. AB, AC, AL, CE, MD, MS, PC, and RN: writing-review and editing. MD, PC, RN, DC, GM, CE, VG, LA, AP, RO, CA, DS, GP, FM, AC, IR, AB, AL, and MS: visualization. AB, AL, and MS: supervision. AB, AC, AL, MS, PC, and RN: project administration. AC and DC: funding acquisition. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec16">
<title>Funding</title>
<p>The authors received no financial support for the research, authorship and publication of this article.</p>
</sec>
<ack>
<p>The authors gratefully acknowledge the gamekeepers of Castelporziano Presidential Estate for their invaluable collaboration in the wildlife passive surveillance programme and without whom this study would not have been possible. The authors wish to thank Federico Romiti (IZSLT) for conducting parasitological analyses and Silvia Brodini and Alessandra Previdi (IZSLER) for their technical assistance. Thanks also to Cristina Bertasio (IZSLER) for the data analysis with NGS.</p>
</ack>
<sec sec-type="COI-statement" id="sec17">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="sec18">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2023.1250787/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2023.1250787/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.PDF" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<fn-group>
<fn id="fn0001">
<p><sup>1</sup><ext-link xlink:href="https://primer3.ut.ee/" ext-link-type="uri">https://primer3.ut.ee/</ext-link></p>
</fn>
<fn id="fn0002">
<p><sup>2</sup><ext-link xlink:href="https://www.geneious.com/" ext-link-type="uri">https://www.geneious.com</ext-link></p>
</fn>
</fn-group>
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