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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2023.1217966</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Straw mulch improves soil carbon and nitrogen cycle by mediating microbial community structure and function in the maize field</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Liu</surname> <given-names>Bangyan</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/2302357/overview"/>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name><surname>Dai</surname> <given-names>Yisha</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Cheng</surname> <given-names>Xin</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>He</surname> <given-names>Xian</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1111788/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bei</surname> <given-names>Qicheng</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Yifan</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhou</surname> <given-names>Yuling</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhu</surname> <given-names>Bo</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhang</surname> <given-names>Kangping</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Tian</surname> <given-names>Xiaoqin</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1123066/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Duan</surname> <given-names>Meichun</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/2195400/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Xie</surname> <given-names>Xiaoyu</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Wang</surname> <given-names>Longchang</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/397686/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>College of Agronomy and Biotechnology, Southwest University</institution>, <addr-line>Chongqing</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Engineering Research Center of South Upland Agriculture, Ministry of Education, Southwest University</institution>, <addr-line>Chongqing</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ</institution>, <addr-line>Halle</addr-line>, <country>Germany</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Luis Raul Comolli, Independent Researcher, Basel, Switzerland</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Xiaojing Hu, Chinese Academy of Sciences (CAS), China; Jun Zhao, Nanjing Normal University, China</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Longchang Wang <email>wanglc2003&#x00040;163.com</email>; <email>wanglc&#x00040;swu.edu.cn</email></corresp>
<fn fn-type="equal" id="fn001"><p>&#x02020;These authors have contributed equally to this work</p></fn></author-notes>
<pub-date pub-type="epub">
<day>18</day>
<month>07</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1217966</elocation-id>
<history>
<date date-type="received">
<day>06</day>
<month>05</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>06</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2023 Liu, Dai, Cheng, He, Bei, Wang, Zhou, Zhu, Zhang, Tian, Duan, Xie and Wang.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Liu, Dai, Cheng, He, Bei, Wang, Zhou, Zhu, Zhang, Tian, Duan, Xie and Wang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license> </permissions>
<abstract>
<p>This study was conducted to investigate the capability of the microbial community characteristics and soil variables to promote carbon and nitrogen cycles in maize fields under straw mulch. We covered the surface soil of the maize field with different amounts of wheat straw (0 kg/ha, 2,250 kg/ha, and 4,500 kg/ha) and used 16S rRNA and ITS sequencing, Biology ECO-plate, traditional enzymology, TOC analyzer, and HPLC to measure bacterial and fungal community composition and functions, characteristics of microbial carbon source metabolism, carbon and nitrogen fraction, enzyme activity, and organic acid content in the maize rhizosphere and non-rhizosphere. The results indicated that short-term straw mulch insignificantly affected the alpha diversity of bacterial and fungal communities whereas significantly influenced their beta diversity. The results of functional prediction revealed that straw mulch considerably boosted the relative abundances of bacteria belonging to chemoheterotrophy, aerobic chemoheterotrophy, ureolysis, and nitrogen fixation and inhibited fermentation and nitrate reduction in maize rhizosphere soil. These processes primarily drove the C and N cycles in soil. Straw mulch also improved fungal saprotrophs by raising the proportion of <italic>Chaetomiaceae</italic> and <italic>Chaetosphaeriaceae</italic>. The Biology ECO-plate results illustrated that straw mulch weakened the metabolism capacity of microbial labile carbon resources. As a result, the labile C and N fractions were raised under straw mulch. Our results also showed that straw mulch primarily regulated the microbial community structure in rhizosphere soil by significantly decreasing <italic>Firmicutes</italic> and <italic>Ascomycota</italic> relative abundance while increasing <italic>Basidiomycota</italic>. The fungal community structure is more than bacterial for affecting soil microbial biomass carbon, readily oxidizable organic carbon, dissolved organic carbon, available nitrogen, ammonium, and nitrate directly and indirectly through malic acid content and cellulase, protease, and amylase activity. Overall, our findings imply that straw mulch might influence the bacterial and fungal community structures, thereby boosting the production of labile C and N components and accelerating the C and N cycle in maize fields.</p></abstract>
<kwd-group>
<kwd>straw mulch</kwd>
<kwd>microbial community structure</kwd>
<kwd>carbon cycle</kwd>
<kwd>nitrogen cycle</kwd>
<kwd>carbon metabolism</kwd>
</kwd-group>
<counts>
<fig-count count="5"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="121"/>
<page-count count="16"/>
<word-count count="12870"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Terrestrial Microbiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1. Introduction</title>
<p>The process of agricultural production generally produces a large number of straw residues such as corn stover/cob (1,661 million tons), rice straw (975 million tons), and wheat straw (529 million tons) every year in the world (Tan et al., <xref ref-type="bibr" rid="B90">2021</xref>). Otherwise, the majority of straw is directly discarded or burned, leading to biomass resource waste and environmental pollution (Huang et al., <xref ref-type="bibr" rid="B34">2021</xref>). Straw burning, in particular, seriously influences global climate change and public health by increasing fine particulate matter and trace gas (e.g., CO<sub>2</sub>, CH<sub>4</sub>, N<sub>2</sub>O, SO<sub>2</sub>) emissions (Chen et al., <xref ref-type="bibr" rid="B13">2019</xref>; Ren et al., <xref ref-type="bibr" rid="B78">2019</xref>; Huang et al., <xref ref-type="bibr" rid="B34">2021</xref>). Hence, the strategies of straw residue utilization have received a lot of attention from researchers in recent decades, and it has been found that straw returning to the field such as mulching is the most economical and environmental measure for straw residue deposal (Li et al., <xref ref-type="bibr" rid="B50">2018</xref>; Cong et al., <xref ref-type="bibr" rid="B16">2020</xref>).</p>
<p>Straw mulch, as one of the conservation agricultural management and cultivation practice, provides a large of energy and food for the activities of soil microorganisms, soil animals, and crops during the degradation process, realizing the organic cycle of bioenergy and playing a vital role in ecologically sustainable agriculture (Liu et al., <xref ref-type="bibr" rid="B58">2017</xref>; Guo et al., <xref ref-type="bibr" rid="B26">2018</xref>; Sun et al., <xref ref-type="bibr" rid="B89">2018</xref>). Simultaneously, straw degradation involves a series of complex microorganism processes (Mei et al., <xref ref-type="bibr" rid="B67">2020</xref>). For instance, white rot fungi can degrade the lignin of straw and convert complex polysaccharides into simple sugars, which can be used as carbon resources by bacterial communities or plant roots (Sharma and Arora, <xref ref-type="bibr" rid="B82">2015</xref>; L&#x000F3;pez-Mond&#x000E9;jar et al., <xref ref-type="bibr" rid="B60">2016</xref>; Maarastawi et al., <xref ref-type="bibr" rid="B63">2019</xref>). In general, microorganisms are involved in diverse soil biogeochemical processes, such as litter decomposition, nutrient mineralization, and soil carbon or nitrogen cycles, through the detrital food chain by interacting with soil fauna (Bardgett and Van Der Putten, <xref ref-type="bibr" rid="B7">2014</xref>; Grandy et al., <xref ref-type="bibr" rid="B23">2016</xref>; Kou et al., <xref ref-type="bibr" rid="B43">2020</xref>). For instance, bacterial communities (e.g., <italic>Acidobacteria, Proteobacteria</italic>, and <italic>Actinobacteria</italic>) primarily mediate the degradation of easily decomposed organic matter such as fat and sugar in the first stage of straw degradation, whereas fungal communities (e.g., <italic>Basidiomycota</italic> and <italic>Mortierellomycota</italic>) mainly degrade cellulose, hemicellulose, lignin, and other refractory substances of straw at the latter stage (Paterson et al., <xref ref-type="bibr" rid="B77">2008</xref>; Marschner et al., <xref ref-type="bibr" rid="B66">2011</xref>; Weng et al., <xref ref-type="bibr" rid="B101">2021</xref>). Therefore, soil microbes, as the vital hinge for energy and matter exchange between the biosphere and abiotic sphere in the soil ecosystem, play an important role in the transformation of straw organic carbon and nitrogen into the soil during the process of straw decomposition (Zhang et al., <xref ref-type="bibr" rid="B114">2016</xref>; Cong et al., <xref ref-type="bibr" rid="B16">2020</xref>; Lu et al., <xref ref-type="bibr" rid="B62">2020</xref>). Hence, researching the series of soil biochemical processes driven by the change of microbial communities with straw mulch application is incredibly beneficial for further understanding the material cycle in the agricultural soil ecosystem.</p>
<p>The straw contains the majority of organic components such as lignin, cellulose, starches, lipids, and proteins that can regulate soil organic carbon or nitrogen storage and compensate for the loss of native soil C and N in agroecosystems by returning (Liu et al., <xref ref-type="bibr" rid="B56">2014</xref>; Cao et al., <xref ref-type="bibr" rid="B11">2018</xref>; Hou et al., <xref ref-type="bibr" rid="B32">2020</xref>; Zheng et al., <xref ref-type="bibr" rid="B116">2020</xref>). Sun et al. (<xref ref-type="bibr" rid="B88">2013</xref>) studied that straw return directly enhanced soil organic carbon (SOC) storage in the 0&#x02013;20 cm soil layer. Hao et al. (<xref ref-type="bibr" rid="B28">2022</xref>) illustrated that mineral fertilizers plus straw return significantly increased the contents of soil readily oxidizable organic carbon (ROC) and particulate organic carbon (POC) and their proportion in SOC. Similarly, Cong et al. (<xref ref-type="bibr" rid="B16">2020</xref>) found different types of straw return increased the soil-dissolved organic carbon (DOC) and microbial biomass carbon (MBC) contents by regulating C-related microbial abundance. Researchers also agreed that wheat straw could minimize soil N leaching and runoff potential while boosting N immobilization and indicated that N fixation is primarily caused by fungi when the straw decomposes (Zavalloni et al., <xref ref-type="bibr" rid="B110">2011</xref>; Cao et al., <xref ref-type="bibr" rid="B11">2018</xref>). Furthermore, Xia et al. (<xref ref-type="bibr" rid="B103">2018</xref>) supposed that the C and N biogeochemical cycles are closely coupled and that straw return enhances soil C storage while also affecting soil reactive N losses. Therefore, studying the soil C and N fractions mediated by microbial communities changing with a straw mulch will benefit further understanding the biogeochemical cycling of the organic matter resulting from straw.</p>
<p>Soil enzymes, including extracellular and intracellular enzymes, play a major role in the biochemical cycle of organic matter in the soil system, and their activities are closely linked to soil physical characteristics, SOM, and microbial biomass and activity (Karaca et al., <xref ref-type="bibr" rid="B39">2011</xref>). For example, cellulase and urease play key roles in carbon and nitrogen cycling in the soil and are excellent indicators of soil biological change because they react swiftly to soil management (Wang et al., <xref ref-type="bibr" rid="B96">2012</xref>; Utobo and Tewari, <xref ref-type="bibr" rid="B94">2015</xref>). According to Akhtar et al. (<xref ref-type="bibr" rid="B3">2018</xref>), the soil enzyme activities that are connected to SOC and accessible N concentrations were dramatically reduced by the straw mulch. Some researchers documented that the microorganisms degraded the cellulose and lignin in straw into various carbohydrates or other smaller organic components by secreting extracellular enzymes (Salvach&#x000FA;a et al., <xref ref-type="bibr" rid="B81">2013</xref>; Shen et al., <xref ref-type="bibr" rid="B83">2020</xref>). In addition, soil organic acids, originating from plant root exudates, microorganism excretions, and organic matter decomposition, play crucial roles in the carbon cycle, metal detoxification, and physiochemical processes of mineralization and solubilization of poorly available and complex minerals in soil (Adeleke et al., <xref ref-type="bibr" rid="B2">2017</xref>). Hence, by comprehensively analyzing the soil enzyme activity and organic acid content interactions with the microbial community structures and functions changing with straw mulch, we can deeply explore the soil biogeochemical succession process mediated by straw mulch.</p>
<p>Recent studies on straw mulch patterns regulating microbial communities and SOC fractions have increased (Wang et al., <xref ref-type="bibr" rid="B98">2018</xref>; Cong et al., <xref ref-type="bibr" rid="B16">2020</xref>; Jin et al., <xref ref-type="bibr" rid="B38">2020</xref>), though few have examined the microbial community characteristics stimulated by straw mulching to regulate soil carbon and nitrogen fractions, organic acids, and soil enzyme activities. Thereby, this research was conducted by using wheat straw mulch patterns with varying amounts (0 kg/ha, 2,250 kg/ha, and 4,500 kg/ha), applying 16S DNA and ITS amplicon sequencing to identify the bacterial and fungal community composition and predict their functions, respectively. Additionally, the Biological ECO-plate technology was applied to test the microbial carbon metabolism ratio (Guo et al., <xref ref-type="bibr" rid="B27">2020</xref>; Liu et al., <xref ref-type="bibr" rid="B55">2022</xref>). Simultaneously, the measurements of soil organic acids, enzyme activity, and C and N fractions were made using HPLC (high-performance liquid chromatography), classic enzymology methods, and a TOC analyzer. The aims of this study were (i) to investigate how the soil microbial community diversity, composition, and functions changed with increasing straw mulch amount in maize rhizosphere and non-rhizosphere soil; (ii) to assess the content of soil C and N fractions mediated by microbial communities changing with straw mulch; and (iii) to study the interaction mechanism among soil organic acids, enzymes activity, soil C and N fractions, and microbial communities regulated by straw mulch.</p>
</sec>
<sec id="s2">
<title>2. Materials and methods</title>
<sec>
<title>2.1. The study design and samples collection</title>
<p>This study was performed on the experiment farm at Southwest University, Chongqing, China (29&#x000B0;81&#x02032;N, 106&#x000B0;41&#x02032;E; elevation 244 m). The soil type was classified as purple soil (dystric regosols) on dry land (Liu et al., <xref ref-type="bibr" rid="B55">2022</xref>). Before the study, the soil pH was 6.0, the soil moisture content was 23.73%, the soil organic matter (SOM) content was 18.62 g.kg<sup>&#x02212;1</sup>, and the soil total and available nitrogen contents were 1.065 g&#x000B7;kg<sup>&#x02212;1</sup> and 99.35 mg<sup>.</sup>kg<sup>&#x02212;1</sup>, respectively.</p>
<p>The cultivation pattern was wheat&#x02013;maize&#x02013;soybean rotation&#x02013;intercropping, with the following details: each plot area was 28.8 m<sup>2</sup> (3.6 m &#x000D7; 8 m) and divided into eight strips (3.6 m &#x000D7; 1 m), with two crops intercropping in separate strips of the same plot, and each crop was planted four strips per plot. Wheat&#x02013;maize intercropped from 20 April to 9 May 2019, following which soybean was cycled in wheat strips, and maize&#x02013;soybean intercropped from 11 May to 14 August 2019. Maize seedlings were nurtured in a 25&#x000B0;C incubator (15,000 lx light intensity, 70% humidity) for 7 days before being planted in the field on March 20, and each strip grew two rows with ten seedlings per row. Wheat was grown from 2 November 2018 to 9 May 2019, with soybean planted in wheat strips on May 11. Three mulch amounts of wheat straw were designed, i.e., CK (0 kg&#x000B7;hm<sup>&#x02212;2</sup> straw mulch amount), S1 (2,250 kg&#x000B7;hm<sup>&#x02212;2</sup> straw mulch amount), and S2 (4,500 kg&#x000B7;hm<sup>&#x02212;2</sup> straw mulch amount). The wheat straw was cut into &#x0007E;20 cm long pieces and evenly covered on the maize field on May 23, using a randomized block design with three repetitions for a total of nine plots. The basic fertilizers were applied with a compound fertilizer of 750 kg&#x000B7;hm<sup>&#x02212;2</sup> (including N 15%, P<sub>2</sub>O<sub>5</sub> 15%, and K<sub>2</sub>O 15%) and urea of 150 kg&#x000B7;hm<sup>&#x02212;2</sup>.</p>
<p>During the pustulation stage (26 June 2019), samples of maize rhizosphere and non-rhizosphere soils were obtained. With five plants per plot, by shaking the maize root to remove loose dirt, only soil attached to the root surface at 0&#x02013;2 mm was preserved as rhizosphere soil samples. To sample the non-rhizosphere soil, a 0&#x02013;15 cm soil layer was dug between the maize rows. Impurities were removed from the soils by passing the sample through a 2 mm mesh sieve. A portion of each soil sample was stored at &#x02212;80&#x000B0;C for sequencing, another portion was stored at 4&#x000B0;C and used to determine the microbial carbon source metabolism and MBC, and the rest portion of the soil samples was air-dried for measuring the physical and chemical properties.</p>
</sec>
<sec>
<title>2.2. DNA extraction, PCR amplification, sequencing, and data processing</title>
<p>Soil DNA was extracted by using the Fast DNA<sup>&#x000AE;</sup> SPIN Kit for Soil (MP Biomedicals, California, USA). The extracted DNA quality was measured by using a NanoDrop 2000 UV-Vis spectrophotometer (Thermo Scientific, Wilmington, USA; OD260/280 = 1.86&#x02013;1.93, and the total DNA concentration range was 29.3&#x02013;54.0 ng&#x000B7;&#x003BC;l<sup>&#x02212;1</sup>). The hypervariable regions of bacterial V3&#x02013;V4 and fungal ITS1 were amplified by using a thermocycler PCR system (GeneAmp<sup>&#x000AE;</sup> 9700, ABI, USA). The amplified primers of bacteria and fungi were 338F (5&#x02032;-ACTCCTACGGGAGGCAGCAG-3&#x02032;) and 806R (5&#x02032;-GGACTACHVGGGTWTCTAAT-3&#x02032;) (Xu et al., <xref ref-type="bibr" rid="B104">2016</xref>), and ITS1F (5&#x02032;-CTTGGTCATTTAGAGGAAGTAA-3&#x02032;) and ITS2R (5&#x02032;-GCTGCGTTCTTCATCGATGC-3&#x02032;) (Adams et al., <xref ref-type="bibr" rid="B1">2013</xref>), respectively. The PCR reaction mixture was as follows: 0.4 &#x003BC;l of FastPfu polymerase (TransGen AP221-02), 4 &#x003BC;l of 5 &#x000D7; FastPfu Buffer, 2 &#x003BC;l of 2.5 mM dNTPs, 0.8 &#x003BC;l of forwarding primer (5 &#x003BC;M), 0.8 &#x003BC;l of reverse primer (5 &#x003BC;M), 0.2 &#x003BC;l of BSA, 10 ng of template DNA, and added ddH<sub>2</sub>O to 20 &#x003BC;l. The PCR amplification conditions were pre-denaturation at 95&#x000B0;C for 3 min, then denaturation at 95&#x000B0;C for 30 s, annealing at 55&#x000B0;C for 30 s, and elongation at 72&#x000B0;C for 45 s as a cycle (bacteria and fungi performed 28 and 36 cycles, respectively), and extension at 72&#x000B0;C for 10 min (PCR, ABI GeneAmp<sup>&#x000AE;</sup> type 9700). AxyPrep DNA Gel Extraction Kit (Axygen Biosciences, Union City, CA, USA) was used to purify PCR products, and QuantiFluorTM-ST (Promega, USA) was used to quantify DNA.</p>
<p>Illumina&#x00027;s MiSeq PE300 platform was used for amplicon sequencing (Majorbio Biopharmaceutical Technology Co. LTD, Shanghai, China). The Trimmomatic was used to control the quality of original sequence fastq files, and then, the forward and reverse sequences were merged by Flash software (<ext-link ext-link-type="uri" xlink:href="https://ccb.jhu.edu/software/FLASH/index.shtml">https://ccb.jhu.edu/software/FLASH/index.shtml</ext-link>) in the Mothur platform (Mago&#x0010D; and Salzberg, <xref ref-type="bibr" rid="B65">2011</xref>). The UPARSE software (version 7.1 <ext-link ext-link-type="uri" xlink:href="http://drive5.com/uparse/">http://drive5.com/uparse/</ext-link>) was used to cluster the operational taxonomic units (OTUs) at the 97% sequence similarity level, where the singleton and chimera sequences were discarded. RDP Classifier (<ext-link ext-link-type="uri" xlink:href="http://rdp.cme.msu.edu/">http://rdp.cme.msu.edu/</ext-link>) was performed to analyze the taxonomy of each 16S DNA and ITS sequence. In total, we obtained 443,448 bacterial sequences and 662,382 fungi sequences from 18 soil samples. Using a 97% similarity cutoff, we further clustered those sequences into 6,095 OTUs for bacteria (Silva: Release138 <ext-link ext-link-type="uri" xlink:href="http://www.arb-silva.de">http://www.arb-silva.de</ext-link>) and 3,168 OTUs for fungi (Unite: Release 8.0 <ext-link ext-link-type="uri" xlink:href="http://unite.ut.ee/index.php">http://unite.ut.ee/index.php</ext-link>), respectively.</p>
</sec>
<sec>
<title>2.3. The biology ECO-plate experiment</title>
<p>The Biology ECO-plate (Biology, Hayward, CA), including 31 of the most useful labile carbon substrates, could express the carbon source metabolism characteristics of microbial communities (Guo et al., <xref ref-type="bibr" rid="B27">2020</xref>). The incubation and calculating procedures were detailed in our previous study (Liu et al., <xref ref-type="bibr" rid="B55">2022</xref>). The average well-color development (AWCD) was used to calculate the microbial carbon source usage in each microplate as follows: AWCD = &#x02211;(OD<sub>i</sub> &#x02013; <italic>R</italic>)/31, where OD<sub>i</sub> represents the absorbance value of each hole except the control hole, and <italic>R</italic> represents the control hole absorbance value.</p>
</sec>
<sec>
<title>2.4. The determination of soil physicochemical factors</title>
<p>The soil MBC was measured by using a chloroform fumigation-extraction method (Vance et al., <xref ref-type="bibr" rid="B95">1987</xref>). The soil POC and ROC were determined by sodium hexametaphosphate dispersion and the KMnO<sub>4</sub> oxidation method, respectively (Li et al., <xref ref-type="bibr" rid="B52">2015</xref>; Hao et al., <xref ref-type="bibr" rid="B28">2022</xref>). Soil total organic carbon (TOC), DOC, and dissolved organic nitrogen (DON) contents were determined using a TOC analyzer (TOC-L; Shimadzu, Kyoto, Japan) (Moon et al., <xref ref-type="bibr" rid="B72">2019</xref>). The soil ammonium nitrogen (AMN) and nitrate nitrogen (NN) contents were tested by the MgO diffusion method and ultraviolet spectrophotometry, respectively (Holmes et al., <xref ref-type="bibr" rid="B31">1998</xref>). The contents of soil total nitrogen (TN) and available nitrogen (AN) were determined by the Kjeldahl method and alkaline hydrolysis diffusion method, respectively (Athalye-Jape et al., <xref ref-type="bibr" rid="B5">2020</xref>; Li et al., <xref ref-type="bibr" rid="B53">2021</xref>).</p>
<p>To measure cellulase activity, 10 g of the soils were incubated with 20 ml of 1% carboxymethyl cellulose solution, 5.0 ml of phosphate buffer (pH = 5.5), and 1.5 ml of methylbenzene for 72 h at 37&#x000B0;C. The released glucose was estimated by the 3, 5-dinitro salicylic acid colorimetry (DNS) method and was expressed in terms of milligrams of Glucose Equivalents per kg of soil per 72 h (mg/kg) (Guan et al., <xref ref-type="bibr" rid="B24">1986</xref>). Similarly, the DNS was used to measure amylase and sucrase activity, which was quantified in milligrams of Glucose Equivalents per gram of soil every 24 h (mg/g) (Guan et al., <xref ref-type="bibr" rid="B24">1986</xref>). The potassium permanganate titration technique was used to assess catalase activity, which was represented in milliliters of KMnO<sub>4</sub> reduction per gram of soil per hour (ml/g) (Guan et al., <xref ref-type="bibr" rid="B24">1986</xref>). The ninhydrin colorimetry technique was used to assess protease activity, which was expressed in milligrams of NH<sub>2</sub>-N per gram of soil every 24 h (mg/g) (Guan et al., <xref ref-type="bibr" rid="B24">1986</xref>). Urease activity was measured using the sodium phenolate-sodium hypochlorite colorimetry technique, and it was represented in milligrams of NH<sub>3</sub>-N per gram of soil per 24 h (mg/g) (Guan et al., <xref ref-type="bibr" rid="B24">1986</xref>).</p>
<p>Soil organic acids were extracted by a 0.1% H<sub>3</sub>PO<sub>4</sub> aqueous solution. In brief, 5 g wet soil was dissolved in 10 ml 1% H<sub>3</sub>PO<sub>4</sub> aqueous solution by shaking for 1 min at room temperature, then 5,000 r/min centrifuged 5 min. The suspension was filtered through 0.45 &#x003BC;m filter membranes for HPLC (Shimadzu prominence UFLC, LC 20 AD, Kyoto, Japan. C18 column: Shim-pack GIST, 4.6 &#x000D7; 250 mm, 5 &#x003BC;m) analysis. Mobile phases A and B were 0.1% H<sub>3</sub>PO<sub>4</sub> deionized water and acetonitrile with a volume ratio of 98:2, respectively. The detecting ultraviolet wavelength was 210 nm, and the flow rate was maintained at 1 ml/ min. The injection volume was set at 20 &#x003BC;l, and the column temperature was kept constant at 25&#x000B0;C. Finally, by comparing retention durations and areas with pure standards, the organic acids were identified and quantified. Oxalic acid (OA), citric acid (CA), malic acid (MIA), malonic acid (MOA), and succinic acid (SA) were all found in our investigation, but lactic acid, propionic acid, acetic acid, and tartaric acid were not.</p>
</sec>
<sec>
<title>2.5. Date analysis</title>
<p>The alpha diversity and richness of the microbial community were calculated through the Tukey test of ANOVA analysis to compare the differences within samples, including the indexes of Chao 1, Shannon, Simpson, and others. Based on the Bray&#x02013;Curtis distance matrix, the non-metric multidimensional scaling (NMDS) and Adonis analysis were generated by the R package of &#x0201C;vegan&#x0201D; to evaluate the microbial community structure variation (Oksanen et al., <xref ref-type="bibr" rid="B74">2016</xref>). The microbial relative abundance was calculated based on the OTU tables, and the R package of &#x0201C;pheatmap&#x0201D; was used to build the heatmap of the microbial community relative abundance and carbon sources metabolism (Kolde, <xref ref-type="bibr" rid="B42">2019</xref>). In addition, the volcano plot of enrichment and depletion OTUs was drawn using the R package &#x0201C;ggplot2&#x0201D; based on the OTUs computation results of the R package of &#x0201C;DESeq2&#x0201D; (Love et al., <xref ref-type="bibr" rid="B61">2014</xref>; Wickham, <xref ref-type="bibr" rid="B102">2016</xref>; Li et al., <xref ref-type="bibr" rid="B49">2017</xref>). We employed the FAPROTAX database platform (<ext-link ext-link-type="uri" xlink:href="http://mem.rcees.ac.cn:8080/">http://mem.rcees.ac.cn:8080/</ext-link>) to predict functions of bacterial biogeochemical cycles, such as carbon, nitrogen, and sulfur cycle, as well as other ecological functions (Zhang et al., <xref ref-type="bibr" rid="B112">2019</xref>; Yu et al., <xref ref-type="bibr" rid="B109">2021</xref>). The FUNGuild database was used to predict fungal ecological function traits, which primarily include three trophic modes of the fungal community: pathotroph (by harming host cells to receive nutrients), symbiotroph (by exchanging resources with host cells to receive nutrients), and saprotroph (by breaking down dead host cells to receive nutrients) (Tedersoo et al., <xref ref-type="bibr" rid="B92">2014</xref>; Nguyen et al., <xref ref-type="bibr" rid="B73">2016</xref>). The changing curves of AWCD values of the Biology ECO-plate were created by R software. The Tukey&#x02013;Kramer of ANOVA was performed to test the differences in microbial functions, soil carbon, nitrogen fractions, soil enzyme activity, and soil organic acid contents among multiple groups. The bubble chart of soil factors was created by R packages of &#x0201C;ggpubr.&#x0201D; The heatmap between bacterial biogeochemical functions and family lever communities was generated by R packages of &#x0201C;reshape,&#x0201D; &#x0201C;psych,&#x0201D; &#x0201C;ggtree,&#x0201D; &#x0201C;dplyr,&#x0201D; &#x0201C;tidyverse,&#x0201D; and &#x0201C;aplot&#x0201D; (Yu et al., <xref ref-type="bibr" rid="B108">2018</xref>; Liu et al., <xref ref-type="bibr" rid="B55">2022</xref>; Revelle, <xref ref-type="bibr" rid="B80">2022</xref>). The Mantel test was used to analyze the relationship among microbial communities at the phylum level and soil carbon and nitrogen fractions, soil enzyme activity, and soil organic acids contents with straw mulch.</p>
<p>The &#x0201C;piecewiseSEM&#x0201D; of the R package was used to create the structural equation model (SEM) among microbial structure and soil carbon and nitrogen fractions, soil enzyme activity, and soil organic acid contents (Lefcheck, <xref ref-type="bibr" rid="B47">2016</xref>). The first principal component of principal coordinate analysis (PCoA) of microbial communities was used based on OTUs to represent the microbial community structure at the SEM (Yang et al., <xref ref-type="bibr" rid="B105">2021</xref>). The SEM was created based on the following hypothesizes: (1) The bacterial and fungal structure changed with the increasing straw mulch amount; (2) the changed bacterial and fungal structure had different contributions to the soil carbon and nitrogen cycle; (3) the soil enzyme activity and organic acid content induced by the changing microbial community would affect soil carbon and nitrogen pools. Finally, we chose the goodness of fit model according to the <italic>P</italic>-value and Akaike information criterion (AIC) value of models.</p>
</sec>
</sec>
<sec id="s3">
<title>3. Results</title>
<sec>
<title>3.1. The structure of microorganism communities changed by increasing straw mulch amounts</title>
<p>Within-sample diversity data revealed that two different quantities of straw mulch enhanced alpha diversity of the microbial community in maize rhizosphere and non-rhizosphere soil although not significantly (<italic>P</italic> = 0.63 and <italic>P</italic> = 0.067, respectively; <xref ref-type="table" rid="T1">Table 1</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). Otherwise, there was a significant difference in microbial community richness in maize non-rhizosphere soil (<italic>P</italic> = 0.048; <xref ref-type="table" rid="T1">Table 1</xref>). Furthermore, the NMDS analysis results of microbiological community abundance illustrated that the bacterial and fungal communities were reshaped remarkably into different individual groups by straw mulch amounts in maize rhizosphere and non-rhizosphere (<italic>P</italic> = 0.01), which were separated along the first coordinate axis (<xref ref-type="fig" rid="F1">Figures 1C</xref>, <xref ref-type="fig" rid="F1">D</xref>), indicating that both straw mulch and its amount disturbed the microbiota in maize rhizosphere and non-rhizosphere. In addition, the Adonis analysis results demonstrated that bacterial and fungal community compositions changed significantly by the increasing straw mulch amount in the maize rhizosphere (<italic>R</italic><sup>2</sup> = 0.56, <italic>P</italic> = 0.005; <italic>R</italic><sup>2</sup> = 0.65, <italic>P</italic> = 0.002) and non-rhizosphere soil (<italic>R</italic><sup>2</sup> = 0.35, <italic>P</italic> = 0.004; <italic>R</italic><sup>2</sup> = 0.47, <italic>P</italic> = 0.009; <xref ref-type="table" rid="T1">Table 1</xref>). Moreover, the volcano plot results of enrichment and depletion OTUs revealed that increasing straw mulch amounts increased the upregulated and downregulated population numbers of bacterial (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S1A</xref>&#x02013;<xref ref-type="supplementary-material" rid="SM1">C</xref>) and fungal (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S1D</xref>&#x02013;<xref ref-type="supplementary-material" rid="SM1">F</xref>) communities in maize rhizosphere soil. The fungal population in the non-rhizosphere exhibited the same results (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S1J</xref>&#x02013;<xref ref-type="supplementary-material" rid="SM1">L</xref>). In addition, the influence of straw mulch amount on microbial population structure was stronger for fungi than bacteria in maize rhizosphere and non-rhizosphere soil (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S1</xref>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Adonis analysis of the effect of the straw mulch on the microbial community composition and diversity in the maize rhizosphere and non-rhizosphere soil environment based on OTU abundance.</p></caption> 
<table frame="box" rules="all">
<thead>
<tr style="background-color:&#x00023;919498;color:&#x00023;ffffff">
<th/>
<th valign="top" align="left" colspan="2"><bold>Bacterial community structure</bold></th>
<th valign="top" align="left" colspan="2"><bold>Fungal community structure</bold></th>
<th valign="top" align="left" colspan="2"><bold>Microbial community diversity</bold></th>
<th valign="top" align="left" colspan="2"><bold>Microbial community richness</bold></th>
</tr>
</thead>
<tbody>
<tr style="background-color:&#x00023;919498;color:&#x00023;ffffff">
<td/>
<td valign="top" align="left"><italic>R</italic><sup>2</sup></td>
<td valign="top" align="left"><italic><bold>P</bold></italic><bold>-value</bold></td>
<td valign="top" align="left"><italic>R</italic><sup>2</sup></td>
<td valign="top" align="left"><italic><bold>P</bold></italic><bold>-value</bold></td>
<td valign="top" align="left"><italic>R</italic><sup>2</sup></td>
<td valign="top" align="left"><italic><bold>P</bold></italic><bold>-value</bold></td>
<td valign="top" align="left"><italic>R</italic><sup>2</sup></td>
<td valign="top" align="left"><italic><bold>P</bold></italic><bold>-value</bold></td>
</tr> <tr>
<td valign="top" align="left">Rhizosphere</td>
<td valign="top" align="left">0.562</td>
<td valign="top" align="left">0.005<sup>&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">0.649</td>
<td valign="top" align="left">0.002<sup>&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">0.212</td>
<td valign="top" align="left">0.63</td>
<td valign="top" align="left">0.119</td>
<td valign="top" align="left">0.884</td>
</tr>
<tr>
<td valign="top" align="left">Non-rhizosphere</td>
<td valign="top" align="left">0.345</td>
<td valign="top" align="left">0.004<sup>&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">0.467</td>
<td valign="top" align="left">0.009<sup>&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">0.491</td>
<td valign="top" align="left">0.067</td>
<td valign="top" align="left">0.545</td>
<td valign="top" align="left">0.048<sup>&#x0002A;</sup></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>&#x0002A;</sup>0.01 &#x0003C; <italic>P</italic> &#x02264; 0.05.</p>
<p><sup>&#x0002A;&#x0002A;</sup>0.001 &#x0003C; <italic>P</italic> &#x02264; 0.01.</p>
</table-wrap-foot>
</table-wrap>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Spatial distribution characteristic of bacterial and fungal communities in the soil of the maize field. <bold>(A)</bold> The stacked bar of bacterial community relative abundance at the phylum level; <bold>(B)</bold> the stacked bar of fungal community relative abundance at the phylum level; <bold>(C)</bold> the non-metric multidimensional scaling (NMDS) analysis of bacteria at the OTU level; <bold>(D)</bold> the non-metric multidimensional scaling (NMDS) analysis of fungi at the OTU level. The &#x0201C;others&#x0201D; in <bold>(A)</bold> and <bold>(B)</bold> represent the summary of the relative abundance of less than 1% of species. S1_R, S2_R, and CK_R represent the rhizosphere soil of treatments S1, S2, and CK, respectively; S1_NR, S2_NR, and CK_NR represent the non-rhizosphere soil of treatments S1, S2, and CK, respectively (same below in all figures and tables).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-14-1217966-g0001.tif"/>
</fig>
<p>The difference in maize soil microbiota among the straw mulch treatments was significant and detectable at the phylum level. Raising straw mulch amounts reduced the relative abundances of <italic>Proteobacteria</italic> and <italic>Firmicutes</italic> while increasing the relative abundances of <italic>Acidobacteria, Chloroflexi, Verrucomicrobia</italic>, and <italic>Planctomycetes</italic> in maize rhizosphere soil (<xref ref-type="fig" rid="F1">Figure 1A</xref>). More specifically, the relative abundance of <italic>Bacteroidetes</italic> in treatment S1 was considerably greater than CK (<italic>P</italic> = 0.04) and S2 (<italic>P</italic> = 0.005), whereas the relative abundance of <italic>Firmicutes</italic> in treatment S2 was significantly lower than S1 (<italic>P</italic> = 0.04) and CK (<italic>P</italic> = 0.003) in maize rhizosphere soil (<xref ref-type="fig" rid="F1">Figure 1A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S2</xref>). Simultaneously, compared to CK, treatment S1 increased the relative abundance of <italic>Gemmatimonadetes</italic> (<italic>P</italic> = 0.04), whereas treatment S2 decreased the relative abundance of <italic>Planctomycetes</italic> (<italic>P</italic> = 0.04) in maize non-rhizosphere soil (<xref ref-type="fig" rid="F1">Figure 1A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S2</xref>). For the fungal community, in comparison with CK, the treatments S1 and S2 significantly reduced the relative abundance of <italic>Ascomycota</italic> (<italic>P</italic> = 0.04 and <italic>P</italic> = 0.001, respectively) while significantly increasing the relative abundance of <italic>Basidiomycota</italic> (<italic>P</italic> = 0.002 and <italic>P</italic> = 0.004, respectively) in maize rhizosphere soil (<xref ref-type="fig" rid="F1">Figure 1B</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S3</xref>). Nevertheless, the relative abundance of <italic>Ascomycota</italic> and <italic>Basidiomycota</italic> in maize non-rhizosphere soil was raised marginally by the raising straw mulch amount (<italic>P</italic> &#x0003E; 0.05; <xref ref-type="fig" rid="F1">Figure 1B</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S3</xref>).</p>
<p>Furthermore, the heatmap results of species relative abundance at the family level showed that the treatments S1 and S2 enriched more types of bacterial communities than CK in maize rhizosphere and non-rhizosphere soil (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S2A</xref>, <xref ref-type="supplementary-material" rid="SM1">B</xref>). In particular, the treatments S1 and S2 increased the relative abundance of <italic>Acetobacteraceae, Acidothermaceae, Caulobacteraceae, Chitinophagaceae, Rhodanobacteraceae</italic>, and others in maize rhizosphere and non-rhizosphere soil while decreasing the relative abundance of <italic>Moraxellaceae</italic> (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S2A</xref>, <xref ref-type="supplementary-material" rid="SM1">B</xref>). The treatment S2 was the most beneficial for enriching multiple kinds of the fungal community in the maize rhizosphere and non-rhizosphere soil, and it greatly enhanced the relative abundance of <italic>Chaetomiaceae, Chaetosphaeriaceae, Hydnodontaceae, Trichosphaeriaceae, Hypocreales_fam_Incertae_sedis</italic>, and others (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S2C</xref>, <xref ref-type="supplementary-material" rid="SM1">D</xref>).</p>
</sec>
<sec>
<title>3.2. The regulation of soil carbon and nitrogen components, enzyme activity, and organic acids by straw mulch</title>
<p>Our study demonstrated that applying and increasing straw mulch amounts cannot significantly change soil TN and TOC in maize rhizosphere and non-rhizosphere soils, as well as their ratio (<italic>P</italic> &#x0003E; 0.05; <xref ref-type="fig" rid="F2">Figures 2A</xref>&#x02013;<xref ref-type="fig" rid="F2">C</xref>, <xref ref-type="fig" rid="F2">F</xref>&#x02013;<xref ref-type="fig" rid="F2">H</xref>). Otherwise, the treatment S2 significantly increased the labile C fractions of ROC, MBC, and POC (<xref ref-type="fig" rid="F2">Figure 2A</xref>) and labile N fractions of DON, AN, AMN, and NN (<xref ref-type="fig" rid="F2">Figure 2C</xref>) in maize non-rhizosphere soil (<italic>P</italic> &#x0003C; 0.05). Simultaneously, treatments S1 and S2 substantially enhanced those soil enzymes related to C or N degradation such as protease, cellulase, amylase, and sucrase activities in the maize non-rhizosphere soil compared to CK (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F2">Figure 2D</xref>). Compared with maize non-rhizosphere soil, the straw mulch had a smaller effect on labile C and N fractions and related enzyme activities in maize rhizosphere soil. In detail, the ROC, MBC (<xref ref-type="fig" rid="F2">Figure 2F</xref>), and AN (<xref ref-type="fig" rid="F2">Figure 2G</xref>) in the maize rhizosphere were outstandingly raised by the increasing straw mulch amount (<italic>P</italic> &#x0003C; 0.05). On the contrary, the DOC (<xref ref-type="fig" rid="F2">Figures 2A</xref>, <xref ref-type="fig" rid="F2">F</xref>) and DOC/DON (<xref ref-type="fig" rid="F2">Figures 2C</xref>, <xref ref-type="fig" rid="F2">H</xref>) ratio markedly decreased by the increasing straw mulch amounts in maize rhizosphere and non-rhizosphere soil (<italic>P</italic> &#x0003C; 0.05). In addition, in maize rhizosphere soil, the cellulase, sucrase, and catalase activities of the treatment S2 were significantly higher than CK (<italic>P</italic> &#x0003C; 0.05), whereas straw mulch had no significant effect on soil amylase, protease, or urease activity (<xref ref-type="fig" rid="F2">Figure 2I</xref>). Furthermore, the content of succinic acid, oxalic acid, and malonic acid outstanding improved with increasing straw mulch amounts in maize non-rhizosphere (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F2">Figure 2E</xref>), as well as the content of malic acid and succinic acid in maize rhizosphere (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F2">Figure 2J</xref>).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>One-way ANOVA multiple comparisons (Tukey) of soil organic carbon and nitrogen components, enzyme activities, and organic acid contents. <bold>(A&#x02013;E)</bold> shows the comparison of soil carbon fractions, nitrogen fractions, C/N ratio, enzyme activities, and organic acid contents in maize non-rhizosphere soil, respectively; (<bold>F&#x02013;J)</bold> show the comparison of soil carbon fractions, nitrogen fractions, C/N ratio, enzyme activities, and organic acid contents in maize rhizosphere soil, respectively. The gray bubble represents significant differences at the <italic>P</italic> &#x0003C;0.05 level, and the size of the bubble represents the scale value. TOC, total organic carbon; MBC, microbial biomass carbon; POC, particulate organic carbon; ROC, readily oxidizable organic carbon; DOC, dissolved organic carbon; TN, total nitrogen; AMN, ammonium nitrogen; AN, available nitrogen; NN, nitrate nitrogen; DON, dissolved organic nitrogen; DOC/DON, the ratio of DOC to DON; TOC/TN, the ratio of TOC to TN; PRO, protease; CEL, cellulase; AMY, amylase; SUC, sucrase; URE, urease; CAT, catalase; OA, oxalic acid; MOA, malonic acid; MIA, malic acid; CA, citric acid; SA, succinic acid (the same below in all figures and tables).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-14-1217966-g0002.tif"/>
</fig>
</sec>
<sec>
<title>3.3. The functional characteristics of the microbiological community with straw mulch in maize soil</title>
<p>We assessed the carbon source consumption efficiency of the microbial community, which was boosted by varying the quantity of straw mulch used (<xref ref-type="fig" rid="F3">Figure 3</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S3</xref>). The results showed that increasing the amount of straw mulch lowered the microbial utilization ratio of carbohydrates, esters, amino acids, carboxylic acids, and amines in maize rhizosphere and non-rhizosphere soil (<xref ref-type="fig" rid="F3">Figures 3A</xref>, <xref ref-type="fig" rid="F3">B</xref>). Compared with CK, the treatments S1 and S2 significantly decreased the carbohydrate metabolism ratio of microorganisms in maize rhizosphere soil (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F3">Figure 3A</xref>), and the treatment S2 remarkably cut down the carboxylic acid metabolism ratio of microorganisms in maize non-rhizosphere soil (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F3">Figure 3B</xref>). More specifically, compared with CK, the S1 treatment remarkably reduced the metabolism ratio of L-phenylalanine and glycyl-L-glutamic acid by microorganisms in maize rhizosphere and non-rhizosphere, respectively (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F3">Figure 3C</xref>). The treatment S2 significantly decreased the utilization ratio of glycogen, D-galactonic acid &#x003B3;-lactone, L-phenylalanine, and L-threonine by microorganisms in maize rhizosphere and &#x003B1;-ketobutyric acid in maize non-rhizosphere soil (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F3">Figure 3C</xref>).</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Carbon resource metabolism functions of the microbial community under straw mulch. <bold>(A, B)</bold> The carbon-containing compound metabolism ratio of the microbial community with straw mulch in maize rhizosphere and non-rhizosphere soil, respectively. The different lower cases mean significant differences among treatments. <bold>(C)</bold> The 31 kinds of carbon resource metabolism efficiency of a microbial community with straw mulch in the rhizosphere and non-rhizosphere soil (&#x0201C;&#x0002A;&#x0201D; represents a significant difference compared with CK at <italic>P</italic> &#x0003C; 0.05 level).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-14-1217966-g0003.tif"/>
</fig>
<p>This study analyzed the functions of the bacterial biogeochemical matter cycle based on the FAPROTAX database. The results showed that performing straw mulch remarkably promoted the processes of chemoheterotrophy, aerobic chemoheterotrophy, ureolysis, and nitrogen fixation of the bacterial community in maize rhizosphere soil, while significantly inhibiting the processes of fermentation and nitrate reduction (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F4">Figure 4A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary</xref> <xref ref-type="supplementary-material" rid="SM1">Table S4</xref>). The cellulolysis was also marginally raised by increasing the straw mulch amount in maize rhizosphere and non-rhizosphere soil (<xref ref-type="fig" rid="F4">Figure 4A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S5A</xref>). Nonetheless, there was no substantial variation in these bacterial community functions in maize non-rhizosphere soil with straw mulch application (<italic>P</italic> &#x0003E; 0.05; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S5A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary</xref> <xref ref-type="supplementary-material" rid="SM1">Table S5</xref>). Furthermore, the Pearson correlation analysis was performed between dominant bacterial communities and the environmental functions (<xref ref-type="fig" rid="F4">Figure 4C</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S5C</xref>). The findings revealed that chemoheterotrophy, aerobic chemoheterotrophy, ureolysis, nitrogen fixation, and cellulolysis had a significant positive correlation with the relative abundance of <italic>Acetobacteraceae, Burkholderiaceae, Xanthobacteraceae, Chitinophagaceae, Caulobacteraceae, SC-I-84</italic>, and <italic>Rhodanobacteraceae</italic> while having a significant negative correlation with the relative abundance of <italic>Enterobacteriaceae, Moraxellaceae, Streptococcaceae</italic>, and <italic>Pseudomonadaceae</italic> in the maize rhizosphere (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F4">Figure 4C</xref>). Nevertheless, the fermentation, nitrate reduction, and aromatic compound degradation all showed contrary associations with the aforementioned species compared with the above functions (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F4">Figure 4C</xref>). However, the correlation between environmental functions and multiple bacterial populations in maize non-rhizosphere did not alter considerably (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S5C</xref>).</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Functional predictions of the microbial community with straw mulch in maize rhizosphere soil. <bold>(A)</bold> Bacterial function annotation by FAPROTAX with straw mulch in maize rhizosphere soil (the mean proportions &#x0003E;1% were shown); <bold>(B)</bold> function annotation of a fungal guild type based on FUNGuild with straw mulch in maize rhizosphere soil (the mean proportions of &#x0003E;1% were shown); <bold>(C)</bold> the correlation heatmap graph between bacterial environment functions and species (family level, the relative abundance &#x0003E;1% was shown) in maize rhizosphere soil with straw mulch. &#x0201C;&#x0002A;,&#x0201D; &#x0201C;&#x0002A;&#x0002A;,&#x0201D; and &#x0201C;&#x0002A;&#x0002A;&#x0002A;&#x0201D; represent significant differences at <italic>P</italic> &#x0003C; 0.05, 0.01 &#x0003C; <italic>P</italic> &#x0003C; 0.05, and 0.001 &#x0003C; <italic>P</italic>&#x0003C; 0.01 level, respectively. The Benjamini&#x02013;Hochberg method was used to correct <italic>P</italic>-values.</p></caption>
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<p>Simultaneously, the fungal trophic functions were analyzed by the FUNGuild database. We observed that the main trophic type of the fungal community was saprotroph in maize rhizosphere and non-rhizosphere soil (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S4</xref>). After straw mulch, the endophyte and litter or wood saprotroph proportions raised outstanding in maize rhizosphere and non-rhizosphere soil (<italic>P</italic> &#x0003C; 0.01; <xref ref-type="fig" rid="F4">Figure 4B</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S5B</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S6</xref>, <xref ref-type="supplementary-material" rid="SM1">S7</xref>). In addition, according to the significant differences in fungal guild type, the corresponding fungal communities in maize rhizosphere soil were selected (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S6</xref>). The results exhibited that straw mulch application increased the relative abundance of <italic>Chaetomiaceae, Chaetosphaeriaceae</italic>, and <italic>Hypocreales_fam_Incertae_sedis</italic>, leading to the fungus of litter or wood saprotroph growing in maize rhizosphere soil (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S6</xref>).</p>
</sec>
<sec>
<title>3.4. The relationship between soil factors and microbial communities regulated by straw mulch</title>
<p>The results of the Pearson test showed that straw mulch (MT) had a significant positive correlation with the contents of AN, TOC, ROC, MBC, MIA, SA, and activity of cellulase and catalase in maize rhizosphere soil but a negative correlation with DOC content (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F5">Figure 5A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S8</xref>). The Mantel test results denoted that these soil factors exhibited a significant correlation with the abundance of microbial communities regulated by straw mulch, particularly <italic>Firmicutes, Ascomycota</italic>, and <italic>Basidiomycota</italic> (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F5">Figure 5A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S10</xref>). Similar results were presented in maize non-rhizosphere (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S7A</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S9</xref>, <xref ref-type="supplementary-material" rid="SM1">S10</xref>). Hence, we created the piecewise structure equation model based on the Pearson and Mantel test among straw mulch, soil factors, and the microbial community. The model revealed that the straw mulch dominated the fungal community structures to drive the cycle of soil labile C and N (<xref ref-type="fig" rid="F5">Figure 5B</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S7B</xref>). Straw mulch, in particular, favorably controlled the fungal community structures (<italic>R</italic><sup>2</sup> = 0.96, <italic>P</italic> &#x0003C; 0.001), considerably increasing the levels of MBC, ROC, AN, MIA, SA, and cellulase activity in the maize rhizosphere soil (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="fig" rid="F5">Figure 5B</xref>). In addition, the fungal community structures changed by straw mulch positively regulated MBC and DOC indirectly by improving MIA content and cellulase activity in the maize rhizosphere soil, respectively. Otherwise, in the maize rhizosphere soil, the fungal community structure had a direct negative and positive impact on the soil&#x00027;s DOC and ROC contents, respectively, and it directly enhanced soil cellulase activity to indirectly lower ROC contents (<xref ref-type="fig" rid="F5">Figure 5B</xref>). In general, the total effect of the straw mulch on catalase activity was the highest (<xref ref-type="fig" rid="F5">Figure 5C</xref>). The straw mulch positively regulated fungal community structure directly and then indirectly positively drove ROC content to improve catalase activity (<xref ref-type="fig" rid="F5">Figure 5B</xref>).</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>Relationship between the microbial community and soil factors in maize rhizosphere soil with straw mulch. <bold>(A)</bold> The correlation between microbial community (phylum level) and soil factors in maize rhizosphere soil with straw mulch. The right upper shows the Pearson correlation among components of soil carbon and nitrogen, enzyme activity, and organic acids. The left bottom shows the Mantel analysis between the microbial community and soil factors. The width and color of the lines show different Mantel&#x00027;s <italic>r</italic> and <italic>P</italic>-values. Just present the microbial community that has a significant correlation. <bold>(B)</bold> The piecewise structural equation models (SEMs) show the direct and indirect correlation among straw mulch, microbial community structure (Bray&#x02013;Curtis distance), and soil factors in maize rhizosphere soil with straw mulch. Solid and dashed lines with arrows denote significant and non-significant correlations, respectively. Red and blue lines with an arrow indicate positive and negative effects, respectively. The width of lines with an arrow shows the standardized path coefficients, and the special values are labeled on the adjacent lines. The value of R<sup>2</sup> in boxes denotes the response explained variance. <bold>(C)</bold> The standardized total effects among straw mulch, bacterial community structure, and soil factors are calculated with piecewise structure equation models. MT, straw mulch treatments; TN, total nitrogen; AN, available nitrogen; AMN, ammonium nitrogen; NN, nitrate nitrogen; DOC, dissolved organic nitrogen; TOC, total organic nitrogen; POC, particulate organic nitrogen; ROC, readily oxidizable organic carbon; MBC, microbial biomass carbon; OA, oxalic acid; MOA, malonic acid; MIA, malic acid; CA, citric acid; SA, succinic acid. Significant difference levels: &#x0002A;&#x0002A;&#x0002A;<italic>P</italic> &#x0003C; 0.001, &#x0002A;&#x0002A;<italic>P</italic> &#x0003C; 0.01, and &#x0002A;<italic>P</italic> &#x0003C; 0.05.</p></caption>
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</fig>
<p>For the maize non-rhizosphere soil, the regulation of microbial community structures changed by straw mulch was weaker than in rhizosphere soil, and it was the same for soil C and N components (<xref ref-type="fig" rid="F5">Figure 5</xref>; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S7</xref>). The straw mulch had a positive correlation with fungal community structure in non-rhizosphere soil (<italic>R</italic><sup>2</sup> = 0.92, <italic>P</italic> &#x0003C; 0.001; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S7</xref>), whereas the fungal community structure had a significant direct positive effect on the activity of amylase and protease, along with AN and NN content, and indirectly affected AMN by regulating protease (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S7</xref>). Meanwhile, the fungal community structure indirectly improved MBC content and cellulase activity by enhancing amylase and protease activity in the non-rhizosphere soil, respectively (<italic>P</italic> &#x0003C; 0.05; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure S7</xref>). The total effect of piecewiseSEM revealed that straw mulch had a detrimental influence on DOC content in the non-rhizosphere. This result indicated that straw mulch principal positively regulated fungal community structure, thereby improving the amylase activity to enhance the MBC fraction and reduce DOC content (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figures S7B</xref>, <xref ref-type="supplementary-material" rid="SM1">C</xref>).</p>
</sec>
</sec>
<sec id="s4">
<title>4. Discussion</title>
<sec>
<title>4.1. Straw mulch changes the soil microbial community structure in the maize field</title>
<p>In our study, straw mulch marginally increased the alpha diversity of bacterial and fungal communities in maize rhizosphere and non-rhizosphere soil but not significantly. It is consistent with previous studies that found straw mulch had no effect on alpha diversity indices of soil bacterial and fungal communities but changed the microbial community composition (Zheng et al., <xref ref-type="bibr" rid="B117">2018</xref>; Liu et al., <xref ref-type="bibr" rid="B57">2021</xref>). This suggests that applying straw mulch for the short term will not disrupt the balance of soil native microbial species diversity. Otherwise, increasing the quantity of straw mulch dramatically affected the bacterial and fungal community structures and produced various independent microbial groups in the maize rhizosphere and non-rhizosphere soil. Similarly, recent research indicated that straw mulch significantly altered the organization of the soil microbial population in the wheat and rape field (Zhou et al., <xref ref-type="bibr" rid="B120">2019</xref>; Liu et al., <xref ref-type="bibr" rid="B55">2022</xref>). We further observed that the upregulated and downregulated population numbers of the microbial community were raised by increasing straw mulch amounts in both the maize rhizosphere and non-rhizosphere, in line with previous research that the change in microbial community structure induced by straw mulch amounts may be a foodweb competition mechanism because straw provides multiple nutrition matters such as the input of carbon and nitrogen (Kou et al., <xref ref-type="bibr" rid="B43">2020</xref>; Song et al., <xref ref-type="bibr" rid="B85">2020</xref>). Generally, fungi primarily decompose recalcitrant soil organic matter, while bacteria are more vital in the mineralization of labile fractions (Lindahl and Tunlid, <xref ref-type="bibr" rid="B54">2015</xref>; Fu et al., <xref ref-type="bibr" rid="B21">2019</xref>). As a result, fungi showed significant changes in species abundance under straw mulch than bacteria because fungal communities are adept at degrading lignin, cellulose, and hemicellulose, all of which are abundant in wheat straw (Cong et al., <xref ref-type="bibr" rid="B16">2020</xref>; Tufail et al., <xref ref-type="bibr" rid="B93">2021</xref>).</p>
<p>At the bacterial phylum level, we observed that the relative abundance of <italic>Firmicutes</italic> was significantly reduced from 3 to 0.87% by increasing the straw mulch amount in the soil of the maize field, which could produce urease and/or catalase and promote soil nitrogen cycle (Ren et al., <xref ref-type="bibr" rid="B79">2018</xref>; Zhang et al., <xref ref-type="bibr" rid="B113">2021</xref>). At the fungal phylum level, most previous studies confirmed that the <italic>Ascomycota</italic>, along with a few basidiomycetous fungi, dominate during the early stages of litter decay, with the <italic>Ascomycota</italic> gradually being replaced by the <italic>Basidiomycota</italic> during the later stages of litter decomposition (Frankland, <xref ref-type="bibr" rid="B20">1998</xref>; Osono and Takeda, <xref ref-type="bibr" rid="B76">2002</xref>; Osono, <xref ref-type="bibr" rid="B75">2007</xref>; Eichlerov&#x000E1; et al., <xref ref-type="bibr" rid="B18">2015</xref>). During the litter degradation process, synergistic matters that relay between <italic>Ascomycota</italic> and <italic>Basidiomycota</italic> may be triggered by breakdown products induced at different stages (Taylor, <xref ref-type="bibr" rid="B91">2001</xref>; Watkinson, <xref ref-type="bibr" rid="B100">2016</xref>). Similarly, we found that the relative abundance of <italic>Ascomycota</italic> significantly decreased from 81 to 66% by increasing the straw mulch amount in the soil of the maize field, whereas the relative abundance of <italic>Basidiomycota</italic> significantly increased from 8 to 22%, indicating that increasing straw mulch amount could accelerate the succession process of the fungal community in the soil of the maize field. In addition, earlier research has revealed that soil ecological niche is also a crucial factor for microbial community structure (Dumbrell et al., <xref ref-type="bibr" rid="B17">2010</xref>). In line with prior research, we discovered that the bacterial and fungal community composition with straw mulch, as well as their succession rules, differed between maize rhizosphere and non-rhizosphere soil. It might be disturbed by the activity of the maize root system, such as the production of root-system excretions, resulting in a soil ecological environment distinction between the rhizosphere and non-rhizosphere (Khan et al., <xref ref-type="bibr" rid="B40">2009</xref>).</p>
</sec>
<sec>
<title>4.2. Straw mulch promotes the nitrogen and carbon cycling functions of the soil microbial community in the maize field</title>
<p>Wheat straws are rich in C and N fractions, including cellulose, hemicellulose, lignin, and protein (Khan and Mubeen, <xref ref-type="bibr" rid="B41">2012</xref>; Zhong et al., <xref ref-type="bibr" rid="B118">2020</xref>). Therefore, applying wheat straw mulch can reshape the soil microbial food web due to the input of C and N sources, sequentially leading to a change in the community composition and function of the microbiome (Mendes et al., <xref ref-type="bibr" rid="B68">2014</xref>; Cobellis et al., <xref ref-type="bibr" rid="B15">2016</xref>). In our study, straw mulch significantly increased the processes of bacterial chemoheterotrophy and aerobic chemoheterotrophy in maize rhizosphere soil, proving that a large number of bacteria obtain carbon and energy by oxidizing organic compounds of straw for their growth (Yu et al., <xref ref-type="bibr" rid="B109">2021</xref>), and implying that straw mulch can stimulate the soil carbon cycle by providing food sources for the bacterial community. Additionally, our study demonstrated that straw mulch outstanding reduced aromatic compound degradation and fermentation bacteria in maize rhizosphere soil, indicating that the bacterial community modified by straw mulch can reduce carbon dioxide and methane emissions, thus benefiting soil carbon fix (Miller and Wolin, <xref ref-type="bibr" rid="B69">1981</xref>; Wang et al., <xref ref-type="bibr" rid="B97">2020</xref>). In addition, soil bacteria affect the soil nitrogen cycle by mediating nitrogen fixation, ammonification, denitrification, nitrification, and nitrate reduction (Yoon et al., <xref ref-type="bibr" rid="B107">2015</xref>). Our study observed that straw mulch remarkably enhanced ureolysis and nitrogen fixation of bacteria in maize rhizosphere soil, whereas it significantly inhibited nitrate reduction. This suggests that straw mulch drives the soil nitrogen cycle by bacteria via two mechanisms. For one thing, straw mulch promoted bacterial ureolysis and nitrogen fixation to increase ammonia by degradation of organic nitrogen compounds such as urea and fixing dinitrogen, respectively (Burton and Prosser, <xref ref-type="bibr" rid="B9">2001</xref>; Kuypers et al., <xref ref-type="bibr" rid="B46">2018</xref>). Then, ammonia can fix ammonium nitrogen and nitrate nitrogen by hydrolysis and oxidization, respectively (Jiang et al., <xref ref-type="bibr" rid="B37">2016</xref>; Kuypers et al., <xref ref-type="bibr" rid="B46">2018</xref>). For another, straw mulch reduced the nitrate reduction of bacteria, thus improving nitrate-nitrogen accumulation in soil (Kuypers et al., <xref ref-type="bibr" rid="B46">2018</xref>). It may be the reason that the content of ammonium and nitrate nitrogen in S1 and S2 was significantly higher than CK in maize non-rhizosphere soil (<xref ref-type="fig" rid="F2">Figure 2B</xref>). Furthermore, the ammonium and nitrate nitrogen that accumulate in the maize rhizosphere soil might be absorbed by maize to promote the nitrogen cycle between soil and plant (Jackson et al., <xref ref-type="bibr" rid="B36">1989</xref>; Li et al., <xref ref-type="bibr" rid="B51">2013</xref>); hence, their contents differed insignificantly across treatments. In addition, most previous studies have illustrated that <italic>Proteobacteria, Firmicutes</italic>, and <italic>Bacteroidetes</italic> of bacteria are mostly responsible for driving soil carbon and nitrogen cycle (He et al., <xref ref-type="bibr" rid="B30">2012</xref>; Ren et al., <xref ref-type="bibr" rid="B79">2018</xref>; Zhang et al., <xref ref-type="bibr" rid="B113">2021</xref>). Consistent with previous findings, we discovered that straw mulch accelerated N and C cycling in maize rhizosphere soil by regulating the bacterial community ratio, primarily including <italic>Burkholderiaceae</italic> (&#x003B3;<italic>-Proteobacteria</italic>), <italic>Xanthobacteraceae</italic> (&#x003B1;<italic>-Proteobacteria</italic>), <italic>Chitinophagaceae</italic> (<italic>Bacteroidia</italic>), <italic>Rhodanobacteraceae</italic> (&#x003B3;<italic>-Proteobacteria</italic>), <italic>Caulobacteraceae</italic> (&#x003B1;<italic>-Proteobacteria</italic>), <italic>Acetobacteraceae</italic> (&#x003B1;<italic>-Proteobacteria</italic>), <italic>Enterobacteriaceae</italic> (&#x003B3;<italic>-Proteobacteria</italic>), and <italic>Streptococcaceae</italic> (<italic>Firmicutes</italic>). These bacteria can enhance the processes of chemoheterotrophy, aerobic chemoheterotrophy, ureolysis, cellulolysis, and nitrogen fixation and inhibit the processes of aromatic compound degradation, fermentation, and nitrate reduction, thereby promoting C and N cycle.</p>
<p>In the meantime, the results of the fungal community functional predictor revealed that adding straw mulch significantly increased the proportion of wood saprotrophs in maize rhizosphere soil, such as <italic>Chaetomiaceae</italic> and <italic>Chaetosphaeriaceae</italic>, which could regulate the C cycle by degrading cellulose, hemicellulose, and lignin (Kuramae et al., <xref ref-type="bibr" rid="B45">2013</xref>; Zhang C. et al., <xref ref-type="bibr" rid="B111">2020</xref>; Ferrari et al., <xref ref-type="bibr" rid="B19">2021</xref>). This finding agrees with a recent study that found straw cellulose, hemicellulose, and lignin to be the key food web components that dominated the fungal community structure (He et al., <xref ref-type="bibr" rid="B29">2022</xref>).</p>
<p>Additionally, the results of adding carbon sources incubation showed that the carbon metabolism ratio of the microbial community decreased by the increasing straw mulch amount, especially carbohydrates. There could be two reasons for this outcome. For one thing, straw mulch impacted the fungal community composition more than bacteria in our study, which benefits the metabolism of recalcitrant carbon sources rather than that of soluble carbon sources (Zhong et al., <xref ref-type="bibr" rid="B119">2018</xref>; Cong et al., <xref ref-type="bibr" rid="B16">2020</xref>). For another, the decomposition of straw mulch supplied adequate carbon for the microbial community to flourish, thus reducing their capacity to predation the carbon resource, which implied that more carbon components would be maintained in the soil environment (Huo et al., <xref ref-type="bibr" rid="B35">2017</xref>; Hu et al., <xref ref-type="bibr" rid="B33">2021</xref>). Furthermore, Zhang X. et al. (<xref ref-type="bibr" rid="B115">2020</xref>) demonstrated that root hair proliferation strongly influenced enzyme activities, exudate release, and microbial substrate utilization. Consistent with this study, we found that the carbon source metabolism ratio of the microbial community in the rhizosphere soil was higher than in the non-rhizosphere soil, illustrating that the maize root system with straw mulch may promote soil carbon consumption by driving microbial community activity.</p>
</sec>
<sec>
<title>4.3. The process of interaction among soil carbon, nitrogen, and microbial populations with straw mulch</title>
<p>Straw mulch delivers diverse nutrient matters to the soil via microorganism degradation and mineralization, and a series of biogeochemical events would vary the ratio of distinct soil C and N components, boosting the soil matter cycle (Guo and Gifford, <xref ref-type="bibr" rid="B25">2002</xref>; Leifeld and K&#x000F6;gel-Knabner, <xref ref-type="bibr" rid="B48">2005</xref>; Yang et al., <xref ref-type="bibr" rid="B106">2018</xref>; Jin et al., <xref ref-type="bibr" rid="B38">2020</xref>). Our study demonstrated that straw mulch mediated the soil C and N fractions by regulating microbial community structures such as <italic>Firmicutes, Ascomycota</italic>, and <italic>Basidiomycota</italic>. These microbial communities were reported to be dramatically correlated with SOC fractions (Cong et al., <xref ref-type="bibr" rid="B16">2020</xref>). Previous studies have shown that increasing carbon sequestration could improve soil quality and health while reducing greenhouse gas emissions (Chen et al., <xref ref-type="bibr" rid="B12">2009</xref>; Wang et al., <xref ref-type="bibr" rid="B98">2018</xref>). In our study, soil TOC content was marginally increased by straw mulch (<italic>P</italic> &#x0003E; 0.05), indicating that the short-term straw mulch had no significant contribution to changing the soil&#x00027;s stable C pool. Whereas straw mulch significantly increased MBC and ROC content while reducing DOC content in maize rhizosphere and non-rhizosphere soil (<italic>P</italic> &#x0003C; 0.05), these C fractions have been identified as labile soil organic C pools and critical markers of soil quality (Chen et al., <xref ref-type="bibr" rid="B12">2009</xref>; Strosser, <xref ref-type="bibr" rid="B87">2010</xref>). Despite this, the networks of straw mulch that governed labile C pools differed across maize rhizosphere and non-rhizosphere soil. In maize rhizosphere soil, straw mulch positively promoted fungal community structure, thus indirectly positively mediating MBC and ROC while negatively influencing DOC. Otherwise, straw mulch indirectly positively regulated MBC by the positively affected fungal and bacterial community structure in maize non-rhizosphere soil and then the MBC negatively affected DOC. These distinction networks may be related to frequent reports that show plants interact with soil to shape the rhizosphere microbial community, thus changing community functions (Minz et al., <xref ref-type="bibr" rid="B70">2013</xref>; Zolla et al., <xref ref-type="bibr" rid="B121">2013</xref>; Bakker et al., <xref ref-type="bibr" rid="B6">2015</xref>). Additionally, recent research has shown that the fungus <italic>Ascomycota</italic> and <italic>Basidiomycota</italic> degrade cellulose by producing multiple cellulases (Kumar et al., <xref ref-type="bibr" rid="B44">2008</xref>; Berka et al., <xref ref-type="bibr" rid="B8">2011</xref>; Strakowska et al., <xref ref-type="bibr" rid="B86">2014</xref>). Similarly, our findings reveal that the dominating fungal communities, <italic>Ascomycota</italic> and <italic>Basidiomycota</italic>, altered considerably with straw mulch quantity in maize rhizosphere soil, thereby indirectly regulating ROC and DOC content by directly improving cellulase activity. Furthermore, Chowdhury et al. (<xref ref-type="bibr" rid="B14">2014</xref>) indicated that malic acid content was positively associated with soil labile C levels. Consistent with the previous study, we illustrated that straw mulch remarkably enhanced malic acid content by fungal communities intervening in maize rhizosphere soil, thus having a large indirect influence on MBC content. Otherwise, straw mulch had an indirect positive effect on MBC content in maize non-rhizosphere soil by regulating fungal community structure to stimulate amylase activity, which could directly participate in the metabolic process of soil organic matter by catalyzing starch hydrolysis (Sherene, <xref ref-type="bibr" rid="B84">2017</xref>; Ali et al., <xref ref-type="bibr" rid="B4">2019</xref>).</p>
<p>Ammonium and nitrate N are substantial and effective N donors which can be directly taken in by plants (Loo, <xref ref-type="bibr" rid="B59">1931</xref>; Caicedo et al., <xref ref-type="bibr" rid="B10">2000</xref>; Wang et al., <xref ref-type="bibr" rid="B99">2015</xref>). We discovered that the amount of ammonium and nitrate N rose significantly with straw mulch in maize non-rhizosphere soil, but there was no significant difference in rhizosphere soil, although both their contents were greater in rhizosphere soil than in non-rhizosphere soil. This finding suggested that straw mulch could provide maize with extra utilizable nitrogen by enhancing ammonium and nitrate N generation and that the maize root system may promote the N cycle through the consumption of ammonium and nitrate N during the straw degradation process. Moreover, it is becoming increasingly clear that <italic>Ascomycota</italic> and <italic>Basidiomycota</italic> populations contribute significantly to the biogeochemical nitrogen cycle in terrestrial ecosystems by participating in the mobilization and mineralization processes of ammonium and nitrate N (Montanini et al., <xref ref-type="bibr" rid="B71">2002</xref>; Gorfer et al., <xref ref-type="bibr" rid="B22">2011</xref>; Maeda et al., <xref ref-type="bibr" rid="B64">2015</xref>). Similarly, we observed that straw mulch directly dominated the fungal community structure in maize non-rhizosphere soil, and as a result, the fungal community structure directly influenced nitrate N and indirectly affected ammonium N by directly impacting protease activity. According to Akhtar et al. (<xref ref-type="bibr" rid="B3">2018</xref>), favorable temperature and soil water conditions caused by straw mulch boosted soil available N, which was responsible for improved crop development. In our study, straw mulch indirectly drove the available nitrogen increase in maize rhizosphere and non-rhizosphere soil by directly promoting fungal community structure, especially <italic>Ascomycota</italic> and <italic>Basidiomycota</italic>, as well as the <italic>Firmicutes</italic> of bacteria, which carry genes coding for nitrogen cycles of urease (Zhang et al., <xref ref-type="bibr" rid="B113">2021</xref>) and significantly correlated with the available nitrogen content in maize rhizosphere soil (<italic>P</italic> = 0.023). Otherwise, total nitrogen had no significant difference among treatments in maize rhizosphere and non-rhizosphere soil. Overall, straw mulch promoted labile C and N pools to drive the C and N cycle by reshaping the structure of <italic>Firmicutes, Ascomycota</italic>, and <italic>Basidiomycota</italic> communities in the soil of the maize field.</p>
</sec>
</sec>
<sec id="s5">
<title>5. Conclusion</title>
<p>In this study, we found that straw mulch had no significant contribution to the diversity of the bacterial and fungal communities in maize rhizosphere and non-rhizosphere soil, but it substantially modified their community structure, with the fungal community changing more than the bacterial. In general, straw mulch primarily regulated the community structures of <italic>Proteobacteria, Firmicutes</italic>, and <italic>Bacteroidetes</italic> to accelerate the processes of chemoheterotrophy, aerobic chemoheterotrophy, ureolysis, cellulolysis, and nitrogen fixation while inhibiting the processes of aromatic compound degradation, fermentation, and nitrate reduction, thereby promoting C and N cycle in maize rhizosphere soil. At the same time, straw mulch enhanced the proportion of <italic>Chaetomiaceae</italic> and <italic>Chaetosphaeriaceae</italic> to increase fungal saprotroph, which benefited the decomposition of cellulose, hemicellulose, and lignin and regulated the C cycle in the soil. The bacterial and fungal communities, modified with straw mulch, generally had a lower capacity for carbon source predation. Furthermore, straw mulch controlled the relative abundance of <italic>Firmicutes, Ascomycota</italic>, and <italic>Basidiomycota</italic> communities, influencing soil labile N and C pools such as AN, AMN, NN, MBC, ROC, and DOC fractions. The modified microbial community structure can alter soil labile N and C fractions directly and indirectly by affecting the concentration of malic acid and the activity of cellulase, amylase, and protease, with the fungal community structure being the most important. In total, straw mulch primarily reshaped microbial community structures to promote the production and flux of labile C and N fractions, thereby driving C and N cycle in the soil of the maize field.</p>
</sec>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The data presented in the study are deposited in the NCBI repository (<ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/">https://www.ncbi.nlm.nih.gov/</ext-link>), accession numbers are PRJNA973987 (SAMN35155348 - SAMN35155365) and PRJNA974221 (SAMN35176313 - SAMN35176330) for bacterial and fungal raw sequencing data, respectively.</p>
</sec>
<sec sec-type="author-contributions" id="s7">
<title>Author contributions</title>
<p>LW was primarily responsible for project application, experimental design, and paper revision. BL was heavily involved in the experiment&#x00027;s implementation and writing. YD was primarily responsible for the experiment&#x00027;s execution and proofreading. XC, XH, QB, YW, YZ, BZ, KZ, XT, MD, and XX were primarily involved in some of the experiments in this study. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="s8">
<title>Funding</title>
<p>This study was supported by the National Natural Science Foundation of China (No. 31871583).</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s9">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="s10">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2023.1217966/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmicb.2023.1217966/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.PDF" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table_1.XLS" id="SM2" mimetype="application/vnd.ms-excel" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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