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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2023.1206179</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Editorial</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Editorial: Recent advancements in microbe-pesticide interaction: a smart-soil bioremediation approach</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Bhatt</surname> <given-names>Pankaj</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/379284/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Chen</surname> <given-names>Shaohua</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c002"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/230837/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Murphy</surname> <given-names>Cormac</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="corresp" rid="c003"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1047962/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Agricultural &#x00026; Biological Engineering, Purdue University</institution>, <addr-line>West Lafayette, IN</addr-line>, <country>United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Integrative Microbiology Research Centre, South China Agricultural University</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>School of Biomolecular and Biomedical Science, University College Dublin</institution>, <addr-line>Dublin</addr-line>, <country>Ireland</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited and reviewed by: Jeanette M. Norton, Utah State University, United States</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Pankaj Bhatt <email>pankajbhatt.bhatt472&#x00040;gmail.com</email></corresp>
<corresp id="c002">Shaohua Chen <email>shchen&#x00040;scau.edu.cn</email></corresp>
<corresp id="c003">Cormac Murphy <email>cormac.d.murphy&#x00040;ucd.ie</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>05</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1206179</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>04</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>02</day>
<month>05</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2023 Bhatt, Chen and Murphy.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Bhatt, Chen and Murphy</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license> </permissions>
<related-article id="RA1" related-article-type="commentary-article" xlink:href="https://www.frontiersin.org/research-topics/23190/recent-advancements-in-microbe-pesticide-interaction-a-smart-soil-bioremediation-approach" ext-link-type="uri">Editorial on the Research Topic <article-title>Recent advancements in microbe-pesticide interaction: a smart-soil bioremediation approach</article-title></related-article>
<kwd-group>
<kwd>microbiome</kwd>
<kwd>pesticides</kwd>
<kwd>interaction</kwd>
<kwd>environment</kwd>
<kwd>sustainability</kwd>
<kwd>toxicity</kwd>
</kwd-group>
<counts>
<fig-count count="0"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="4"/>
<page-count count="3"/>
<word-count count="1699"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Terrestrial Microbiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>In recent years, there has been a growing interest in the development of eco-friendly solutions to control pests and promote soil health. One promising approach is the use of microbe-pesticide interactions to achieve smart-soil bioremediation (Bhatt et al., <xref ref-type="bibr" rid="B2">2020</xref>). This approach involves the use of microorganisms that can degrade pesticides, detoxify the soil, and promote plant growth. Recent advancements in this field have shown great promise for sustainable agriculture (Wu et al., <xref ref-type="bibr" rid="B4">2023</xref>). One of the most significant recent advancements in microbe-pesticide interaction is the discovery of new strains of microorganisms that can degrade a wide range of pesticides. These microorganisms can break down pesticides into harmless compounds, which helps to reduce their toxicity and prevent their accumulation in the soil. This not only benefits the health of the soil but also reduces the risk of pesticide contamination in food and water sources (Alexandrino et al., <xref ref-type="bibr" rid="B1">2022</xref>).</p>
<p>Another key advancement in this field is the development of biopesticides, which are pesticides that are derived from natural sources, such as microorganisms, plants, or animals. Unlike conventional pesticides, biopesticides are non-toxic and do not harm the environment or non-target organisms. By using biopesticides in combination with microbe-pesticide interactions, it is possible to achieve effective pest control while promoting soil health. Moreover, recent studies have shown that microbe-pesticide interactions can promote plant growth and increase crop yield. Microorganisms can produce growth-promoting compounds that stimulate plant growth and enhance nutrient uptake. By promoting plant growth, microbe-pesticide interactions can help to increase the efficiency of crop production and reduce the need for chemical fertilizers (Glare and O&#x00027;Callaghan, <xref ref-type="bibr" rid="B3">2019</xref>).</p>
<p>Therefore, the recent advancements in microbe-pesticide interactions have opened new possibilities for sustainable agriculture. By using smart-soil bioremediation approaches that combine the use of microorganisms and biopesticides, it is possible to achieve effective pest control while promoting soil health and enhancing crop yield. These eco-friendly solutions can help to address some of the major challenges facing modern agriculture, such as pesticide resistance, soil degradation, and food security. As such, we must continue to invest in research and development in this field to ensure a sustainable and healthy future for our planet.</p>
<p>In this Research Topic, we have accepted 16 papers authored by 118 authors. The themes of the papers covered microbe-pesticide interactions, bioremediation and the response of gut microbiota to pesticides. The major highlights of the Research Topics are described below.</p>
</sec>
<sec id="s2">
<title>Biodegradation of pesticides in environmental microorganisms</title>
<p><ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.843525">Qian et al.</ext-link> describes an investigation on the potential of using a combination of arbuscular mycorrhizal fungus (AMF) and <italic>Hansschlegelia zhihuaiae</italic> S113 to remediate soils contaminated with the herbicide bensulfuron-methyl. The researchers found that the combined use of AMF and <italic>H. zhihuaiae</italic> S113 was more effective in reducing bensulfuron-methyl residues in soil compared to the use of either organism alone. The study also showed that the combination treatment improved soil nutrient availability and microbial activity, which may have contributed to the enhanced biodegradation of bensulfuron-methyl. In another study, <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.891870">Kumar et al.</ext-link> suggested that the use of environment-restoring microbes isolated from the rhizosphere of horticultural crops under subtropics may provide a promising approach for the bioremediation of chlorpyrifos-contaminated soils. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.1005942">Sharma et al.</ext-link> identified the rhizospheric bacteria for the removal of the carbendazim in soil. They showed the inhibitory effect of carbendazim in isolated bacterial strain. They showed carbendazim (3,000 &#x003BC;g/mL) decreases the concentration of indole acetic acid, ACC deaminase and siderophore production in bacterial cells.</p>
<p><ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.912312">Li et al.</ext-link> suggest that the L1 microbial consortium has the potential to be used for the bioremediation of chlorimuron-ethyl-contaminated soils. However, further research is needed to optimize the conditions for the degradation process and to assess the long-term effectiveness and safety of this approach. The findings of this study may also have implications for the development of microbial consortia for the bioremediation of other herbicides and pollutants. The identification and characterization of the novel dmdA gene and its product may also have implications for the development of new herbicide-resistant crops and the biotechnological production of valuable compounds from dicamba. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.1069754">Zong et al.</ext-link> reported on the novel pyrethroid degrading enzyme SGNH esterase Est882, which can degrade diverse pyrethroids significantly.</p>
<p><ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.982611">Singh and Saxena</ext-link> discussed the recent findings on the pesticide-microbe interaction and showed the relationship among environmental factors at various trophic levels. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.1003820">He et al.</ext-link> discovered the cypermethrin-degrading binary consortium of the genus <italic>Rhodococcus</italic> and <italic>Comamonas</italic>. The developed consortium was effective for the elimination of pyrethroids from the environment. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.1027284">Wahla et al.</ext-link> reported that biochar-immobilized bacteria enhanced metribuzin degradation in the environment. Similarly, <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2023.1056264">Pan et al.</ext-link> observed that immobilized bacteria can accelerate atrazine degradation in soil. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.1075930">Zhao et al.</ext-link> suggested development of the solid agents can facilitate the soil microbial degradation of pesticides.</p>
</sec>
<sec id="s3">
<title>Toxicity of pesticides in living systems</title>
<p><ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.961349">Baazeem et al.</ext-link> reported <italic>Bacillus subtilis</italic> and other bacterial strains identified in their study can be used as an alternative to chemical pesticides for the control of <italic>Aphis punicae</italic> and <italic>Aphis illinoisensis</italic>. However, further research is needed to evaluate the efficacy of these bacterial strains under field conditions and to assess their long-term impact on the environment. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.870462">Siddique et al.</ext-link> highlight the importance of insect gut microbiota in the degradation of pesticides. The gut microbiota of insects can play a critical role in detoxifying pesticides and reducing the accumulation of pesticide residues in the environment. The gut microbiota can also modify the physicochemical properties of pesticides, making them more susceptible to degradation. The composition of gut microbiota in insects can be influenced by several factors, including diet, host genetics, and environmental conditions. Therefore, the gut microbiota of insects can adapt to the presence of pesticides, leading to the development of pesticide-resistant gut microbiota. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.853535">Astaykina et al.</ext-link> reported the impact of three pesticides on the gut microbiota of a earthworm <italic>Lumbricus terrestris</italic>. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.962619">Pathak et al.</ext-link> discussed the negative impacts of pesticides on the environment, and living systems. They suggested the adoption of more sustainable and eco-friendly management strategies using microbial technology.</p>
<p><ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fmicb.2022.979383">Jaffer et al.</ext-link> described the the gut microbiota in insect physiology and the biodegradation of pesticides, and suggests that this knowledge could be leveraged for the development of more sustainable and eco-friendly approaches to pest management.</p>
</sec>
<sec id="s4">
<title>Future research</title>
<p>The articles published on this Research Topic advanced our understanding of pesticide-microbe interactions in soil and other environments. The Research Topic focuses on the degradation of pesticides using various bacterial and fungal strains. In addition, the Research Topic gives insights into the impact of pesticides on the gut microbiota. Further work is needed to meet the major challenges in the field of microbe-pesticide interaction. Advances in &#x00027;omics technologies will promote discoveries of novel methods and future applications capable of cleaning large-scale polluted sites in an eco-friendly manner.</p>
</sec>
<sec sec-type="author-contributions" id="s5">
<title>Author contributions</title>
<p>The editorial draft was written by PB, SC, and CM. All authors contributed to the revision and improvements and approved the final version for submission. All the editors collaborated well for the successful completion of the Research Topic.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="s6">
<title>Funding</title>
<p>This work was supported by the Natural Science Foundation of Guangdong Province, China (Grant Nos. 2023A1515012552 and 2022A1515010422).</p>
</sec>
<ack><p>We are thankful to all the reviewers for their contributions and journal staff for the successful launch and submission of articles on this Research Topic.</p>
</ack>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s7">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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</article> 