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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2021.746340</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title><italic>Blastocystis</italic> One Health Approach in a Rural Community of Northern Thailand: Prevalence, Subtypes and Novel Transmission Routes</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Jinatham</surname> <given-names>Vasana</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Maxamhud</surname> <given-names>Sadiya</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1444356/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Popluechai</surname> <given-names>Siam</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/574468/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Tsaousis</surname> <given-names>Anastasios D.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/39571/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Gentekaki</surname> <given-names>Eleni</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="corresp" rid="c002"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/820548/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>School of Science, Mae Fah Luang University</institution>, <addr-line>Chiang Rai</addr-line>, <country>Thailand</country></aff>
<aff id="aff2"><sup>2</sup><institution>Laboratory of Molecular and Evolutionary Parasitology, RAPID Group, School of Biosciences, University of Kent</institution>, <addr-line>Canterbury</addr-line>, <country>United Kingdom</country></aff>
<aff id="aff3"><sup>3</sup><institution>Gut Microbiome Research Group, Mae Fah Luang University</institution>, <addr-line>Chiang Rai</addr-line>, <country>Thailand</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Lihua Xiao, South China Agricultural University, China</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: David Carmena, Carlos III Health Institute (ISCIII), Spain; Tamalee Roberts, Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit (LOMWRU), Laos</p></fn>
<corresp id="c001">&#x002A;Correspondence: Anastasios D. Tsaousis, <email>a.tsaousis@kent.ac.uk</email></corresp>
<corresp id="c002">Eleni Gentekaki, <email>gentekaki.ele@mfu.ac.th</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Infectious Agents and Disease, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>12</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>746340</elocation-id>
<history>
<date date-type="received">
<day>23</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>16</day>
<month>11</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Jinatham, Maxamhud, Popluechai, Tsaousis and Gentekaki.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Jinatham, Maxamhud, Popluechai, Tsaousis and Gentekaki</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p><italic>Blastocystis</italic> is the most commonly found eukaryote in the gut of humans and other animals. This protist is extremely heterogeneous genetically and is classified into 28 subtypes (STs) based on the small subunit ribosomal RNA (<italic>SSU</italic> rRNA) gene. Numerous studies exist on prevalence of the organism, which usually focus on either humans or animals or the environment, while only a handful investigates all three sources simultaneously. Consequently, understanding of <italic>Blastocystis</italic> transmission dynamics remains inadequate. Our aim was to explore <italic>Blastocystis</italic> under the One Health perspective using a rural community in northern Thailand as our study area. We surveyed human, other animal and environmental samples using both morphological and molecular approaches. Prevalence rates of <italic>Blastocystis</italic> were 73% in human hosts (<italic>n</italic> = 45), 100% in non-human hosts (<italic>n</italic> = 44) and 91% in environmental samples (<italic>n</italic> = 35). Overall, ten subtypes were identified (ST1, ST2, ST3, ST4 ST5, ST6, ST7, ST10, ST23, and ST26), eight of which were detected in humans (ST1, ST2, ST3, ST4, ST5, ST7, ST10, and ST23), three in other animals (ST6, ST7, and ST23), while seven (ST1, ST3, ST6, ST7, ST10, ST23, and ST26) were found in the environment. In our investigation of transmission dynamics, we assessed various groupings both at the household and community level. Given the overall high prevalence rate, transmission amongst humans and between animals and humans are not as frequent as expected with only two subtypes being shared. This raises questions on the role of the environment on transmission of <italic>Blastocystis</italic>. Water and soil comprise the main reservoirs of the various subtypes in this community. Five subtypes are shared between humans and the environment, while three overlap between the latter and animal hosts. We propose soil as a novel route of transmission, which should be considered in future investigations. This study provides a thorough One Health perspective on <italic>Blastocystis</italic>. Using this type of approach advances our understanding on occurrence, diversity, ecology and transmission dynamics of this poorly understood, yet frequent gut resident.</p>
</abstract>
<kwd-group>
<kwd>asymptomatic hosts</kwd>
<kwd><italic>Blastocystis</italic></kwd>
<kwd>environmental transmission</kwd>
<kwd>One Health</kwd>
<kwd>rural community</kwd>
<kwd>Thailand</kwd>
</kwd-group>
<contract-sponsor id="cn001">Thailand Research Fund<named-content content-type="fundref-id">10.13039/501100004396</named-content></contract-sponsor>
<contract-sponsor id="cn002">National Research Council of Thailand<named-content content-type="fundref-id">10.13039/501100004704</named-content></contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="89"/>
<page-count count="12"/>
<word-count count="9168"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p><italic>Blastocystis</italic> is the most ubiquitous protist inhabiting the gastrointestinal tract of human and other animal hosts (<xref ref-type="bibr" rid="B58">Roberts et al., 2013</xref>; <xref ref-type="bibr" rid="B9">Beghini et al., 2017</xref>; <xref ref-type="bibr" rid="B71">Stensvold and van der Giezen, 2018</xref>). Historically, diagnosis of <italic>Blastocystis</italic> has been based on light microscopy of fecal smears or <italic>in vitro</italic> cultures. The organism has four morphological forms: vacuolar, granular, amoeboid, and cyst (<xref ref-type="bibr" rid="B73">Tan, 2008</xref>; <xref ref-type="bibr" rid="B49">Parija and Jeremiah, 2013</xref>). The lack of distinct morphological features had, in the past, blurred the extent of <italic>Blastocystis</italic> diversity. Based on the genetic heterogeneity of the small subunit ribosomal RNA (<italic>SSU</italic> rRNA), <italic>Blastocystis</italic> is currently divided into at least 28 subtypes (STs) consisting of ST1-ST17, ST21, and ST23-ST32, all of which have been found in mammalian and avian hosts and are likely separate species (<xref ref-type="bibr" rid="B64">Stensvold et al., 2012</xref>; <xref ref-type="bibr" rid="B2">Alfellani et al., 2013b</xref>; <xref ref-type="bibr" rid="B88">Zhao et al., 2017</xref>; <xref ref-type="bibr" rid="B43">Maloney et al., 2020</xref>, <xref ref-type="bibr" rid="B40">2021a</xref>,<xref ref-type="bibr" rid="B41">b</xref>; <xref ref-type="bibr" rid="B68">Stensvold and Clark, 2020</xref>; <xref ref-type="bibr" rid="B25">Higuera et al., 2021</xref>). Several genetically distinct <italic>Blastocystis</italic> lineages have also been identified in amphibian, insect and reptilian hosts, however, these are not part of the subtyping nomenclature as yet (<xref ref-type="bibr" rid="B86">Yoshikawa et al., 2007</xref>, <xref ref-type="bibr" rid="B85">2016</xref>).</p>
<p>Despite earlier assumptions, subtypes do not seem to be host specific. So far, ST1-ST9 and ST12 have been reported in humans along with a single instance of ST10, ST14, and ST16 (<xref ref-type="bibr" rid="B67">Stensvold and Clark, 2016</xref>; <xref ref-type="bibr" rid="B31">Khaled et al., 2020</xref>; <xref ref-type="bibr" rid="B47">Osorio-Pulgarin et al., 2021</xref>). The most frequently encountered subtypes in humans are ST1-ST4, with the latter being most often reported in Europe (<xref ref-type="bibr" rid="B18">Deng et al., 2019</xref>; <xref ref-type="bibr" rid="B27">Jim&#x00E9;nez et al., 2019</xref>; <xref ref-type="bibr" rid="B70">Stensvold et al., 2020</xref>). Nonetheless, the subtypes reported in humans have also been found in non-human hosts. For example, ST1 and ST3 have been identified from pigs, while ST4 is dominant in rodents (<xref ref-type="bibr" rid="B84">Yoshikawa et al., 2004</xref>; <xref ref-type="bibr" rid="B65">Stensvold et al., 2009a</xref>; <xref ref-type="bibr" rid="B3">Alfellani et al., 2013a</xref>; <xref ref-type="bibr" rid="B79">Wang et al., 2018</xref>; <xref ref-type="bibr" rid="B11">Betts et al., 2021</xref>).</p>
<p>After more than a century of research, the pathogenicity of <italic>Blastocystis</italic> remains questionable. Its presence in sufferers of chronic gastrointestinal illnesses including irritable bowel syndrome and inflammatory bowel disease has led to speculations about possible links to these disease states (<xref ref-type="bibr" rid="B21">Dogruman-Al et al., 2009a</xref>; <xref ref-type="bibr" rid="B74">Tan et al., 2010</xref>; <xref ref-type="bibr" rid="B54">Poirier et al., 2012</xref>; <xref ref-type="bibr" rid="B15">Cifre et al., 2018</xref>; <xref ref-type="bibr" rid="B30">Kesuma et al., 2019</xref>; <xref ref-type="bibr" rid="B52">Pe&#x00F1;a et al., 2020</xref>; <xref ref-type="bibr" rid="B62">Shirvani et al., 2020</xref>). However, recent studies have increasingly shown that <italic>Blastocystis</italic> is a frequent and stable inhabitant in the gut of hosts without gastrointestinal symptoms (<xref ref-type="bibr" rid="B60">Scanlan et al., 2014</xref>; <xref ref-type="bibr" rid="B46">Mirjalali et al., 2017</xref>; <xref ref-type="bibr" rid="B56">Riabi et al., 2018</xref>; <xref ref-type="bibr" rid="B87">Yowang et al., 2018</xref>; <xref ref-type="bibr" rid="B28">Kataki et al., 2019</xref>; <xref ref-type="bibr" rid="B35">Lhotsk&#x00E1; et al., 2020</xref>; <xref ref-type="bibr" rid="B48">Padukone et al., 2020</xref>). In parallel, this protist has been linked with increased bacterial richness and diversity in the human gut (<xref ref-type="bibr" rid="B7">Audebert et al., 2016</xref>; <xref ref-type="bibr" rid="B13">Chab&#x00E9; et al., 2017</xref>; <xref ref-type="bibr" rid="B33">Laforest-Lapointe and Arrieta, 2018</xref>; <xref ref-type="bibr" rid="B75">Tito et al., 2019</xref>; <xref ref-type="bibr" rid="B19">Deng et al., 2021</xref>). Therefore, a plethora of researchers now consider <italic>Blastocystis</italic> as a commensal rather than a pathogen.</p>
<p>Understanding various aspects of <italic>Blastocystis</italic> epidemiology will contribute significantly toward determining its pathogenicity and/or virulence of the various subtypes. To that end, elucidating routes of transmission and contributions of various sources to these routes is essential. The human-to-human, zoonotic, and waterborne transmission routes have been explored in relation to <italic>Blastocystis</italic> prevalence (<xref ref-type="bibr" rid="B23">Eroglu and Koltas, 2010</xref>; <xref ref-type="bibr" rid="B2">Alfellani et al., 2013b</xref>; <xref ref-type="bibr" rid="B42">Maloney et al., 2019</xref>). Occurrence of certain subtypes in both human and other animal hosts has led to the hypothesis that these are subtypes of zoonotic potential. For instance, ST5, typically found in pigs, and ST6, ST7 typical subtypes of avian hosts, have also been found in humans that handle them extensively (<xref ref-type="bibr" rid="B80">Wang et al., 2014</xref>; <xref ref-type="bibr" rid="B24">Greige et al., 2018</xref>). Transmission of ST8 has also been noted between non-human primates and their human zookeepers (<xref ref-type="bibr" rid="B65">Stensvold et al., 2009a</xref>). Waterborne transmission of <italic>Blastocystis</italic> has been long recognized (<xref ref-type="bibr" rid="B37">Li et al., 2012</xref>; <xref ref-type="bibr" rid="B4">Andersen and Stensvold, 2016</xref>). For instance, ST1 was identified in the water supply of a rural community in central Thailand and schoolchildren that consumed it (<xref ref-type="bibr" rid="B34">Leelayoova et al., 2008</xref>) and in untreated drinking water in Peninsular Malaysia (<xref ref-type="bibr" rid="B6">Anuar et al., 2013</xref>). Nonetheless, only scant studies simultaneously consider the contribution of more than one source to <italic>Blastocystis</italic> transmission.</p>
<p>In general, investigating transmission dynamics requires conditions that allow for uninterrupted cycling of an organism in a community. As such, developing countries comprise ideal areas to undertake these types of approaches. Herein, we undertook a One Health approach to examine <italic>Blastocystis</italic> epidemiology in a rural community of northern Thailand. We collected samples from humans, other animals and the environment and screened them for presence of <italic>Blastocystis</italic>. Data were analyzed at singular and community levels. We identified water and soil as the primary contributing sources to <italic>Blastocystis</italic> transmission routes in this particular community. These findings provide a multi-layered understanding of the transmission dynamics (spreading and cycling) of this controversial protist.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Ethics Statement</title>
<p>The ethics committee of Mae Fah Luang University approved collection of human and animal samples used in this study (human license approval number REH60103 and animal license approval number AR01/62). Ethical rules were in accordance to the Declaration of Helsinki. Data were strictly anonymized and each sample was assigned an individual barcode.</p>
</sec>
<sec id="S2.SS2">
<title>Study Area</title>
<p>This study took place in a century-old rural community of 500 inhabitants in Chiang Rai Province, Thailand, between 2018 and 2019. The province is located in northern Thailand and borders Myanmar (<xref ref-type="fig" rid="F1">Figure 1</xref>). The area of study is located across a river and villagers feed mainly on fish, vegetables and sticky rice. All residents are Thai nationals with no travel history of going abroad. There has been no immigration in the community for the last 20 years. The distance from the closest urban center is 20 km.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Top right panel: Map of Thailand. Black pin has been placed on Chiang Rai Province. Top left panel: Close-up of Chiang Rai Province (in pale yellow) and the district where sampling took place (in black). Bottom panel: Detail of area of collection used in this study. Geometrical shapes represent households. Stars: Only human stool was collected. Triangles: human stool, animal stool and water were collected. Squares: Human and animal stool was collected. Circles: Human stool and water were collected. Red shapes indicate households, where stool samples were collected from all members.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-12-746340-g001.tif"/>
</fig>
</sec>
<sec id="S2.SS3">
<title>Sample Collection</title>
<p>A summary of the methodology used is provided in <xref ref-type="fig" rid="F2">Figure 2</xref>.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Flow chart of the methodology used in this study.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-12-746340-g002.tif"/>
</fig>
<sec id="S2.SS3.SSS1">
<title>Human Fecal Samples</title>
<p>Fecal samples were collected from 45 Thai adults. Each participant was provided with a sterile sampling kit containing collection container, gauze and spatula. Volunteers did not suffer from gastrointestinal diseases and had no gastrointestinal symptoms at the time of sampling. Samples were collected from 39 households, six of which housed families. A family was defined as a group of at least two people living under the same roof.</p>
</sec>
<sec id="S2.SS3.SSS2">
<title>Other Animal Fecal Samples</title>
<p>Fecal samples were collected from 44 animals including chickens, buffalo and pigs. These animals are representative of the livestock present in the community. Several stray dogs wander freely around the community and cannot be assigned to an owner, hence these were not sampled. The animals from which samples were obtained could be traced to specific households. Chickens (<italic>n</italic> = 34) were free-range and lived in tight proximity to the household, while buffalo (<italic>n</italic> = 4) and pigs (<italic>n</italic> = 6) were housed further away from the house. Animals did not have diarrhea or blood in their stool at the time of sampling.</p>
</sec>
<sec id="S2.SS3.SSS3">
<title>Water Samples</title>
<p>Water in the area was surveyed to investigate the possibility of an environmental reservoir of <italic>Blastocystis</italic>. A total of 28 water samples were collected, 17 of which were from rain collection vessels (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 1</xref>). These are cement containers (&#x223C; 2 m in height) present in most houses. Most of the water comes from direct rain run-off from the roof of the house. A pipe directly connects the roof to the container. Cotton plugs serve as filters to catch leaves and wood debris. A lid rests over the containers most of the time. This water is used for drinking and cooking. The containers are washed once a year during the dry season. A tap is located at the bottom of each container. One liter of water was taken from the tap of each container. Water from all containers was turbid at visual inspection.</p>
<p>Three samples of 1 L each were collected from the single community supply water-dispensing machine (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 2</xref>). The water comes from a waterfall, filtered and dispensed from the machine into 10 L containers. This water is used for drinking and cooking. The containers are washed with pressurized water regularly. We sampled three of those containers.</p>
<p>Two samples of 1 L each were collected from the water treatment facility, from which water is distributed to every household through pipes (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 3</xref>). The water is taken directly from the river and occasionally treated with chlorine. This water is used for bathing and watering plants (edible and non-edible).</p>
<p>One sample was collected from the community water tower (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 3C</xref>). The water from the tower comes from the water treatment facility. The bottom of each tower is lined with layers of sand and gravel, which serve as additional filters. Villagers can get their water through a tap located at the bottom of the tower. The water is used mostly for cooking and bathing and rarely for drinking. A 1 L sample was taken from the tap and the water was turbid at visual inspection.</p>
<p>Two samples of 1 L each were collected from the river stream, which is densely grown with morning glory plants (<italic>Ipomoea aquatica Forssk</italic>) and eaten raw or cooked (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 4A</xref>). At the time of collection, water depth was 20 cm. Water was collected from the middle of the stream and was very turbid at visual inspection.</p>
<p>A single sample was collected from an artificial pond with soil sediment. The pond is used for fish farming (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 4B</xref>). A 1 L sample was taken from the shallow end of the pond. Sample was very turbid at visual inspection.</p>
<p>Two samples were taken from a cement container, which is used for short term holding of live fish and amphibians (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 4C</xref>). Occasionally, the water from the pond and the cement container is used for watering gardens. A 1 L sample was collected and was slightly turbid at visual inspection.</p>
</sec>
<sec id="S2.SS3.SSS4">
<title>Soil Samples</title>
<p>Seven soil samples were collected from a depth of no more than 5 cm using sterile spoons. Each sample consisted of 2&#x2013;3 g of soil. Four of these came from four separate vegetable gardens (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figures 5A&#x2013;D</xref>). Three of the gardens were field plots, while one comprised of pots. One soil sample came from an ephemeral stream, where the local herb Plu Kaow grows (<italic>Houttuynia cordata Thunb</italic>). Villagers use this herb extensively (raw or cooked) for vegetable side dishes accompanying raw meat. The stream was void of water, but muddy at the time of collection. One sample was also gathered from river sediment. One soil sample was picked from the riverbank. Both the river and the riverbank are overgrown with morning glory (<xref ref-type="supplementary-material" rid="MS1">Supplementary Figure 6</xref>).</p>
</sec>
</sec>
<sec id="S2.SS4">
<title><italic>Blastocystis</italic> Cultures</title>
<p>For human and other animal fecal samples, approximately 200 mg of freshly collected feces were placed in LYSGM (<xref ref-type="bibr" rid="B20">Diamond, 1982</xref>) containing 10% horse serum. Water samples were left to sit for 3 h on a flat surface. Subsequently, 2&#x2013;4 mL was taken from the bottom of each sample and placed in LYSGM. Soil samples were thoroughly mixed and 100 mg placed in LYSGM. Tubes were incubated at 37&#x00B0;C for 48&#x2013;72 h and screened for <italic>Blastocystis</italic> using light microscopy.</p>
</sec>
<sec id="S2.SS5">
<title>Genomic DNA Extraction</title>
<sec id="S2.SS5.SSS1">
<title>Human and Other Animal Fecal Samples</title>
<p>In the case of human samples, DNA was extracted from feces using 200 mg. DNA from animal samples was extracted prior to the first passage of culture using 250 mL of sediment from each sample. The Qiagen DNA stool minikit (Qiagen, Hilden, Germany) was used according to manufacturer&#x2019;s protocol.</p>
</sec>
<sec id="S2.SS5.SSS2">
<title>Water Samples</title>
<p>DNA was extracted from 250 mL of culture sediment using AccuPrep<sup>&#x00AE;</sup> Genomic DNA Extraction Kit following the manufacturer&#x2019;s protocol.</p>
</sec>
<sec id="S2.SS5.SSS3">
<title>Soil Samples</title>
<p>DNA from soil was directly extracted from 200 mg of soil using PowerSoil<sup>&#x00AE;</sup> DNA Isolation Kit (Carlsbad, CA United States) according to manufacturer&#x2019;s protocol.</p>
</sec>
</sec>
<sec id="S2.SS6">
<title><italic>Blastocystis</italic> Detection</title>
<p>Three approaches were used to detect <italic>Blastocystis</italic> from human samples: microscopy following culturing in LYSGM, conventional PCR and qPCR (<xref ref-type="fig" rid="F2">Figure 2</xref>). For the rest of the samples only microscopy and qPCR were used.</p>
</sec>
<sec id="S2.SS7">
<title>Polymerase Chain Reaction and Sequencing</title>
<p>The broad specificity primer pair RD3 5&#x2032;-GGGATCCTGA TCCTTCCGCAGGTTCACCTAC-3&#x2032; and RD5 5&#x2032;-GGAAGC TTATCTGGTTGATCCTGCCAGTA-3&#x2032; (<xref ref-type="bibr" rid="B16">Clark, 1997</xref>) was used for the first PCR reactions with the following conditions: initial denaturation for 3 min at 94&#x00B0;C, 35 cycles at 94&#x00B0;C for 1 min, annealing 60&#x00B0;C for 1 min, and extension at 72&#x00B0;C for 100 s, with a final elongation step at 72&#x00B0;C for 7 min. A 600 bp fragment of <italic>SSU</italic> rRNA gene region, which is also the barcode region of <italic>Blastocystis</italic> was amplified with a second nested PCR. The PCR reaction was carried out by using the forward BsRD5F (5&#x2032;-ATCTGGTTGATCCTGCCAGT-3&#x2032;) and reverse BhRDr9R (5&#x2032;-GAGCTTTTTAACTGCAACAACG-3&#x2032;) barcoding primers (<xref ref-type="bibr" rid="B61">Scicluna et al., 2006</xref>). The PCR conditions consisted of initial denaturation for 3 min at 94&#x00B0;C, 35 cycles at 94&#x00B0;C for 1 min, annealing 60&#x00B0;C for 1 min, and extension at 72&#x00B0;C for 100 s, with a final elongation step at 72&#x00B0;C for 10 min. Positive and negative controls were included with each batch of samples analyzed.</p>
</sec>
<sec id="S2.SS8">
<title>Quantitative Polymerase Chain Reaction</title>
<p><italic>Blastocystis</italic> prevalence was assessed using qPCR to amplify a 330 bp fragment of the <italic>SSU</italic> rRNA gene. The qPCR reactions mixture were performed in 10 &#x03BC;L reaction mixture volume with 3 &#x03BC;L of water, 4 &#x03BC;L SensiFAST&#x2122; SYBR No-ROX Kit (BIOLINE, United Kingdom), 0.5 &#x03BC;L of each forward (BL18SPPF1; 5&#x2032;-AGTAGTCATACGCTCGTCTCAAA-3&#x2032;) and reverse (BL18SR2PP; 5&#x2032;-TCTTCGTTACCCGTTACTGC-3&#x2032;) <italic>Blastocystis</italic>-specific primer and 2 &#x03BC;L of genomic DNA. The qPCR amplification conditions were as previously described (<xref ref-type="bibr" rid="B53">Poirier et al., 2011</xref>). Reactions were run in 96-well plates in a CFX96 Touch&#x2122; Real-Time PCR Detection System (Bio-Rad, United States). Positive and negative controls were used in each qPCR run together with all samples. Each type of sample was run separately to avoid cross-contamination. For example, soil sample experiments were executed on separate plates and on separate days from water, human and animal samples.</p>
</sec>
<sec id="S2.SS9">
<title>Amplicon Purification and Sequencing</title>
<p>All positive PCR and qPCR products were purified using the GeneJET Gel Extraction Kit (Thermo Fisher Scientific; Wardmedic, Thailand) according to manufacturer&#x2019;s instructions and sequenced at U2Bio (Korea).</p>
</sec>
<sec id="S2.SS10">
<title>Cloning</title>
<p>Twenty-one samples showing long stretches of indistinguishable peaks were cloned, six of which were PCR products and 15 qPCR. Five samples were human, two buffalo, two pig, four chickens, four water and four soil. 1.5 &#x03BC;L of amplicon was used with the pGEM-T easy vector system I (Promega, Madison, WI, United States) following previously published cloning protocols (<xref ref-type="bibr" rid="B10">Betts et al., 2018</xref>). Up to five colonies per transformation were screened.</p>
</sec>
<sec id="S2.SS11">
<title>Phylogenetic Analysis</title>
<p>The chromatogram quality of raw reads was checked using the chromatogram visualization software 4Peaks. Ambiguous bases at the ends of the reads were removed. The new sequences were then used as queries to perform blast searches against the NCBI nr database. Sequences of <italic>SSU</italic> rRNA spanning the spectrum of <italic>Blastocystis</italic> diversity were downloaded and aligned using mafft v. 7.394 (<xref ref-type="bibr" rid="B29">Katoh and Toh, 2010</xref>). Ambiguous positions were removed using trimal v. 1.4 and gappyout option (<xref ref-type="bibr" rid="B12">Capella-Gutierrez et al., 2009</xref>). The final trimmed alignment consisted of 250 taxa and 1497 sites. Maximum likelihood (ML) analysis was performed in CIPRES Science Gateway (<sup><xref ref-type="fn" rid="footnote1">1</xref></sup> <xref ref-type="bibr" rid="B45">Miller et al., 2010</xref>) using RAxML-HPC2 on XSEDE (<xref ref-type="bibr" rid="B63">Stamatakis, 2006</xref>). Bootstrap support was computed from 1,000 pseudoreplicates.</p>
</sec>
</sec>
<sec id="S3" sec-type="results">
<title>Results</title>
<sec id="S3.SS1">
<title>Human Demographic Data</title>
<p>A total of 45 human volunteers participated in this study (31% male, <italic>n</italic> = 14 and 69% female, <italic>n</italic> = 31), with mean age of 59.1 &#x00B1; 8.5 years (median = 60).</p>
</sec>
<sec id="S3.SS2">
<title>Comparison of Microscopy and Molecular Methods in Human Stool Samples</title>
<p>The prevalence of <italic>Blastocystis</italic> in all human stool samples was observed using morphology and molecular techniques (<xref ref-type="table" rid="T1">Table 1</xref>). All samples were cultured in LYSGM and of these, 9% (4/45) were microscopy-positive for <italic>Blastocystis</italic>. Using conventional PCR, 49% (22/45) of samples were positive, while the number increased to 73% (33/45), when using qPCR. All microscopy-positive samples were also positive using molecular detection. Eleven PCR samples were false positive by Sanger sequencing (plants and fungi rather than <italic>Blastocystis</italic>), thus PCR positivity rate of <italic>Blastocystis</italic> confirmed by sequencing was 27% (12/45). One qPCR product was false positive by Sanger sequencing (Fungi; not included in the prevalence calculation). The prevalence rates reported are based only on samples that have been sequenced and are indeed verified as <italic>Blastocystis</italic>.</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Comparison of microscopy and molecular methods.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Methods</td>
<td valign="top" align="center" colspan="2">Prevalence<hr/></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">Positive</td>
<td valign="top" align="center">Negative</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><bold>Morphology</bold></td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">Light microscopy</td>
<td valign="top" align="center">4 (8.89%)</td>
<td valign="top" align="center">41 (91.11%)</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Molecular</bold></td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">Polymerase chain reaction (PCR)</td>
<td valign="top" align="center">12 (26.67%)</td>
<td valign="top" align="center">33 (73.33%)</td>
</tr>
<tr>
<td valign="top" align="left">quantitative Polymerase chain reaction (qPCR)</td>
<td valign="top" align="center">33 (73.33%)</td>
<td valign="top" align="center">12 (26.67%)</td>
</tr>
</tbody>
</table></table-wrap>
</sec>
<sec id="S3.SS3">
<title>Prevalence and Diversity of <italic>Blastocystis</italic> in Animal and Environmental Samples</title>
<p>Forty-four fecal samples were collected from animals as follows: chickens (<italic>n</italic> = 34), pigs (<italic>n</italic> = 6) and buffalo (<italic>n</italic> = 4). All animal samples were cultured in LYSGM. Using microscopy, 65% (22/45) of chicken cultures were positive, while no <italic>Blastocystis</italic> was observed in pig and buffalo cultures. Using qPCR and subsequent sequencing, the prevalence of <italic>Blastocystis</italic> was 100% in chickens, pigs and buffalo. Overall, 28 samples of water and seven samples of soil were cultured and surveyed for <italic>Blastocystis</italic>. Two water and one soil sample were false positives for Cercozoa and bacteria and were not considered for further analysis. Prevalence using qPCR was 93% (26/28) for water and 86% (6/7) for soil. The reported prevalence rates are based solely on samples that have been sequenced and verified as <italic>Blastocystis</italic>.</p>
<p>Of the PCR and qPCR <italic>Blastocystis</italic> positive samples that were sequenced, 21 were cloned: Cloning yielded 62 clones, of which 17 were from human fecal samples, six from buffalo, nine from pig, 14 from chicken, nine from water and seven from soil (<xref ref-type="supplementary-material" rid="MS2">Supplementary Material 2</xref>). The following subtypes (STs) were identified: ST1, ST2, ST3, ST4, ST5, ST6, ST7, ST10, ST23, and ST26 (<xref ref-type="table" rid="T2">Table 2</xref>). Nine sequences could not be subtyped either because of poor quality or short length. Eight of the identified subtypes were found in humans. The dominant subtype was ST23 (12/33, 36%), followed by ST10 (6/33, 18%), ST1 (5/33, 15%), ST3 (2/33, 6%) and a single occurrence of ST2 (1/33, 3%), ST4 (1/33, 3%), ST5 (1/33, 3%), and ST7 (1/33, 3%). Chickens carried ST6 (2/33, 3%) and ST7 (31/33, 94%), pigs ST7 (6/6, 100%), and buffalo ST7 (2/4, 50%) and ST23 (2/4, 100%). Subtype 1 (5/26, 19%), ST3 (13/26, 50%), ST6 (1/26, 4%), ST7 (1/26, 4%), ST23 (1/26, 4%), and ST26 (2/26, 8%) were detected in water, whereas in the soil samples ST1 (1/6, 17%), ST3 (2/6, 33%), ST7 (2/6, 33%), ST23 (3/6, 50%), and ST26 (2/6, 33%) were found. Three humans carried both ST10 and ST23. Within subtypes, multiple genetically diverse strains were present in ST7, while ST1, ST3, ST5, and ST6 sequences were much more genetically similar (data not shown).</p>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Prevalence and subtypes of <italic>Blastocystis</italic> in human, animal, water and soil samples.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Source</td>
<td valign="top" align="center">B + ve</td>
<td valign="top" align="center">ST1</td>
<td valign="top" align="center">ST2</td>
<td valign="top" align="center">ST3</td>
<td valign="top" align="center">ST4</td>
<td valign="top" align="center">ST5</td>
<td valign="top" align="center">ST6</td>
<td valign="top" align="center">ST7</td>
<td valign="top" align="center">ST10</td>
<td valign="top" align="center">ST23</td>
<td valign="top" align="center">ST26</td>
<td valign="top" align="center">UNK</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Human</td>
<td valign="top" align="center">33</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">1</td>
</tr>
<tr>
<td valign="top" align="left">Chicken</td>
<td valign="top" align="center">33</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">31</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
</tr>
<tr>
<td valign="top" align="left">Pig</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
</tr>
<tr>
<td valign="top" align="left">Buffalo</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
</tr>
<tr>
<td valign="top" align="left">Water</td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left">Soil</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1</td>
<td/>
<td valign="top" align="center">2</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">&#x2013;</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Total</bold></td>
<td valign="top" align="center"><bold>108</bold></td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="center"><bold>1</bold></td>
<td valign="top" align="center"><bold>17</bold></td>
<td valign="top" align="center"><bold>1</bold></td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="center"><bold>37</bold></td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="center"><bold>18</bold></td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="center"><bold>3</bold></td>
</tr>
</tbody>
</table></table-wrap>
<p>A detailed account of all newly generated sequences is provided in <xref ref-type="supplementary-material" rid="MS2">Supplementary Material 2</xref>. All 149 sequences generated in this study have been submitted to GenBank under accession numbers <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="OL351649">OL351649</ext-link>&#x2013;<ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="OL351797">OL351797</ext-link>.</p>
</sec>
<sec id="S3.SS4">
<title>Phylogenetic Analysis</title>
<p>All <italic>Blastocystis</italic> sequences grouped together with maximum bootstrap support (BS) (<xref ref-type="fig" rid="F3">Figure 3</xref>). Subtypes 15 and 28 along with sequences from ectothermic hosts placed in the base of the tree in agreement with previous studies (<xref ref-type="bibr" rid="B25">Higuera et al., 2021</xref>). Subtype 5, ST12, ST13, ST14, ST24, and ST25 formed a clade sister to the clade formed by ST26, ST21, ST30, and ST32. Distinct clades of subtypes were as follows: ST6 and ST7; ST1, ST2, and ST11; ST23 and ST10; and ST4 and ST8. Newly generated sequences placed within clades consisting of known subtypes with the exception of the human origin sequence S.NO.07. Notably, the positions of the new sequences placing with ST10 and ST23 are not entirely robust, suggesting that perhaps these are new, closely related subtypes. Nonetheless, without full length sequences further conclusions cannot be drawn (this is currently under investigation).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Maximum likelihood phylogenetic tree inferred from 250 taxa and 1,497 sites of the <italic>SSU</italic> rRNA gene. The tree is artificially rooted to <italic>Proteromonas</italic>, <italic>Protoopalina</italic>, and <italic>Karotomorpha</italic> sequences. Newly generated sequences are in bold. Numerical values indicate bootstrap support. Only values above 70% are depicted.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-12-746340-g003.tif"/>
</fig>
</sec>
<sec id="S3.SS5">
<title>Transmission Dynamics</title>
<sec id="S3.SS5.SSS1">
<title>Household Level</title>
<p>Samples were collected from a total of 39 households. In most cases, a single individual per household was sampled, with the exception of six households where all samples from all individuals were collected (<xref ref-type="fig" rid="F1">Figure 1</xref>). Of those, five households were found positive for <italic>Blastocystis.</italic> In two of them, only the male occupant was positive. In the other three households, both occupants were positive, but carried different subtypes.</p>
</sec>
<sec id="S3.SS5.SSS2">
<title>Farm Animal Ownership Level</title>
<p>Of the 39 sampled households, eight of them had animals (seven with chickens and one with buffalo). <italic>Blastocystis</italic> was found in six of these households and there was no subtype sharing between animal and human hosts (<xref ref-type="table" rid="T3">Table 3</xref>).</p>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>Prevalence of <italic>Blastocystis</italic> in animals and their animal-keepers.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Household</td>
<td valign="top" align="center">Animals</td>
<td valign="top" align="center"><italic>Blastocystis</italic> in humans</td>
<td valign="top" align="center"><italic>Blastocystis</italic> in animals</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">1</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">Negative (<italic>n</italic> = 2)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 10)</td>
</tr>
<tr>
<td valign="top" align="left">2</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">ST1 (<italic>n</italic> = 1) ST10 (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 5)</td>
</tr>
<tr>
<td valign="top" align="left">3</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">ST23 (n-1) unknown (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 5)</td>
</tr>
<tr>
<td valign="top" align="left">4</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">ST23 (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 3)</td>
</tr>
<tr>
<td valign="top" align="left">5</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">ST3 (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 4)</td>
</tr>
<tr>
<td valign="top" align="left">6</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">Unknown (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 3)</td>
</tr>
<tr>
<td valign="top" align="left">7</td>
<td valign="top" align="center">Buffalo</td>
<td valign="top" align="center">ST4 (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST23, ST7 (<italic>n</italic> = 4)</td>
</tr>
<tr>
<td valign="top" align="left">8</td>
<td valign="top" align="center">Chicken</td>
<td valign="top" align="center">Negative (<italic>n</italic> = 1)</td>
<td valign="top" align="center">ST7 (<italic>n</italic> = 4)</td>
</tr>
</tbody>
</table></table-wrap>
</sec>
<sec id="S3.SS5.SSS3">
<title>Environmental Level</title>
<p>Of the 39 sampled households, 16 were sampled for water and six for soil, all of which were positive for <italic>Blastocystis</italic>. There was subtype overlap between water and humans in one household (ST3).</p>
</sec>
<sec id="S3.SS5.SSS4">
<title>Community Level</title>
<p>Out of the 108 <italic>Blastocystis</italic> positive samples, 33 (31%) were from humans, 43 (40%) from animals, 26 (24%) from water and 6 (6%) from soil. Subtype 2 and ST4 were identified only in humans, whereas ST26 was only found in the environmental samples (both soil and water). Subtype 7 was the most broadly distributed as it was found in humans, pig, buffalo and chicken, but also in soil and water. Subtype 1, ST3, ST7, ST10, and ST23 were found in human and environmental samples. No subtype was exclusively shared by only humans and other animals. Subtype 6 was the only one shared between animals and the environment.</p>
</sec>
</sec>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>The study took place in a century old isolated rural community in northern Thailand comprising approximately 500 people. Inhabitants live in very close proximity to their animals, primarily chickens and secondarily buffalo and pigs. Part of the community&#x2019;s water supply comes from the river that runs through it. The river also provides a major food source for the villagers, as fish constitutes the primary protein source of the community, along with vegetables (which also grow inside the river and the river bank) and locally farmed sticky rice. The increased influence of westernized diet noted in urban centers of Thailand has a minor impact in this community. Collectively, the small population, distance from urban centers, unique gastronomy (minimal effect from westernization) and the general lifestyle make this particular community ideal for local One Health approaches. Herein, we used <italic>Blastocystis</italic>, a microbial eukaryote of controversial pathogenicity, to obtain a comprehensive view of its transmission dynamics.</p>
<p><italic>Blastocystis</italic> is the most frequently encountered intestinal protist of metazoans with most studies focusing on either its prevalence in humans, other animals and/or the environment. Nonetheless, only very few investigations explore the organism&#x2019;s transmission dynamics using a tripartite approach, whereby all of the aforementioned factors are considered collectively. In order to understand the role of this organism in health and disease it is essential to determine its occurrence simultaneously in human and non-human hosts and environments.</p>
<p>In humans, the prevalence of <italic>Blastocystis</italic> has been frequently reported in those with and without gastrointestinal symptoms (<xref ref-type="bibr" rid="B22">Dogruman-Al et al., 2009b</xref>; <xref ref-type="bibr" rid="B60">Scanlan et al., 2014</xref>; <xref ref-type="bibr" rid="B87">Yowang et al., 2018</xref>; <xref ref-type="bibr" rid="B28">Kataki et al., 2019</xref>; <xref ref-type="bibr" rid="B35">Lhotsk&#x00E1; et al., 2020</xref>; <xref ref-type="bibr" rid="B48">Padukone et al., 2020</xref>). Overall prevalence of <italic>Blastocystis</italic> might vary due to sampling population, region and detection method (<xref ref-type="bibr" rid="B66">Stensvold et al., 2009b</xref>; <xref ref-type="bibr" rid="B74">Tan et al., 2010</xref>; <xref ref-type="bibr" rid="B3">Alfellani et al., 2013a</xref>; <xref ref-type="bibr" rid="B6">Anuar et al., 2013</xref>; <xref ref-type="bibr" rid="B17">Clark et al., 2013</xref>). Herein, the prevalence of <italic>Blastocystis</italic> in asymptomatic human hosts was 73%, in asymptomatic non-human hosts 100% and in environmental samples 91%. We used microscopy and molecular methods to determine presence of <italic>Blastocystis</italic>. The most sensitive detection method was qPCR matching previous studies (<xref ref-type="bibr" rid="B53">Poirier et al., 2011</xref>; <xref ref-type="bibr" rid="B69">Stensvold and Nielsen, 2012</xref>; <xref ref-type="bibr" rid="B64">Stensvold et al., 2012</xref>). After sequencing all positive samples, a broad diversity of subtypes (STs) was detected: ST1, ST2, ST3, ST4, ST5, ST6, ST7, ST10, ST23, and a potential new subtype. Subtype 10 was detected in six human volunteers. The subtype has been previously found in two Senegalese children (<xref ref-type="bibr" rid="B31">Khaled et al., 2020</xref>), but it is a typical cattle subtype (<xref ref-type="bibr" rid="B14">Cian et al., 2017</xref>; <xref ref-type="bibr" rid="B89">Zhu et al., 2017</xref>; <xref ref-type="bibr" rid="B44">Masuda et al., 2018</xref>; <xref ref-type="bibr" rid="B79">Wang et al., 2018</xref>). To our great surprise, we found ST23 in 12 human samples making it the dominant subtype in this host. So far, ST23 has only been identified in ruminants. The occurrence of ST10 and ST23 in several adults in an Asian country raises questions regarding the host range and transmission dynamics of <italic>Blastocystis</italic> subtypes.</p>
<p>The following transmission routes have been widely discussed for <italic>Blastocystis</italic>: human-to-human, animal-to-human and environment-to-human. The former mode of transmission has been speculated to occur via the fecal-oral route much like other common gastrointestinal parasites. Herein, investigation of individuals within households showed no subtype sharing and there was even an instance of co-habiting individuals, whereby one was <italic>Blastocystis</italic> positive and another negative. This finding matches previous recent reports derived from family units elsewhere (<xref ref-type="bibr" rid="B59">Scanlan et al., 2016</xref>; <xref ref-type="bibr" rid="B35">Lhotsk&#x00E1; et al., 2020</xref>).</p>
<p>We also aimed to look at the animal-to-human transmission route. Previous studies have suggested that specific subtypes are zoonotic (<xref ref-type="bibr" rid="B50">Parkar et al., 2010</xref>; <xref ref-type="bibr" rid="B2">Alfellani et al., 2013b</xref>; <xref ref-type="bibr" rid="B80">Wang et al., 2014</xref>). For instance, ST5 has been proposed as potentially zoonotic from pigs (<xref ref-type="bibr" rid="B83">Yan et al., 2007</xref>; <xref ref-type="bibr" rid="B80">Wang et al., 2014</xref>) and <italic>Blastocystis</italic> ST6 and ST7 from poultry (<xref ref-type="bibr" rid="B55">Ram&#x00ED;rez et al., 2014</xref>; <xref ref-type="bibr" rid="B14">Cian et al., 2017</xref>; <xref ref-type="bibr" rid="B24">Greige et al., 2018</xref>; <xref ref-type="bibr" rid="B78">Udonsom et al., 2018</xref>). Subtype 1, ST7, ST10, and ST23 were found in both human and animal hosts in the studied area giving the impression of zoonotic transmission. However, when looking at a fine-scale level there was no sharing of subtypes between animals and their respective owners. Collective consideration of the evidence points toward the source of <italic>Blastocystis</italic> in this specific community being elsewhere.</p>
<p>This prompted us to look at the two most commonly encountered environmental sources in the community: water and soil. Water contamination has been speculated as a risk factor to acquire <italic>Blastocystis</italic>. However, only few studies have looked at presence of <italic>Blastocystis</italic> in both water and humans that use it and even fewer have employed subtyping to examine overlap between the two (<xref ref-type="bibr" rid="B34">Leelayoova et al., 2008</xref>; <xref ref-type="bibr" rid="B5">Angelici et al., 2018</xref>; <xref ref-type="bibr" rid="B51">Pawestri et al., 2021</xref>). <italic>Blastocystis</italic> has been detected in drinking water (<xref ref-type="bibr" rid="B34">Leelayoova et al., 2008</xref>), tap water (<xref ref-type="bibr" rid="B23">Eroglu and Koltas, 2010</xref>), rain water tanks (<xref ref-type="bibr" rid="B39">Noradilah et al., 2017</xref>; <xref ref-type="bibr" rid="B81">Waters et al., 2019</xref>), bodies of freshwater (<xref ref-type="bibr" rid="B26">Ithoi et al., 2011</xref>; <xref ref-type="bibr" rid="B32">Khalifa et al., 2014</xref>), drinking water treatment facilities (<xref ref-type="bibr" rid="B57">Richard et al., 2016</xref>) and waste water (<xref ref-type="bibr" rid="B72">Suresh et al., 2005</xref>; <xref ref-type="bibr" rid="B8">Banaticla and Rivera, 2011</xref>; <xref ref-type="bibr" rid="B70">Stensvold et al., 2020</xref>). Herein, <italic>Blastocystis</italic> ST1 and ST3 were detected in community supply water, while ST1, ST3, ST5, ST6, ST7, ST10, ST23, and ST26 were found in rain collection vessels. Both these sources comprise the drinking water of this community. The rain collection vessels contain water that is filtered for large debris, but the water is untreated and is consumed unboiled (<xref ref-type="bibr" rid="B38">Li et al., 2007</xref>; <xref ref-type="bibr" rid="B34">Leelayoova et al., 2008</xref>; <xref ref-type="bibr" rid="B6">Anuar et al., 2013</xref>; <xref ref-type="bibr" rid="B82">Wongthamarin et al., 2018</xref>; <xref ref-type="bibr" rid="B81">Waters et al., 2019</xref>). The community supply water is filtered and occasionally treated. Given the exposed nature of the community water, various wildlife animal hosts harboring a range of subtypes (known and unknown) can easily access it. Thus, presence of the organism in these two sources could be due to a combination of factors including contamination by animal droppings and/or substandard management (i.e., filtration and chlorine usage). Water in the vessels is also used to wash vegetables and tubers hence transfer of cysts of a variety of subtypes could occur this way. Indeed <italic>Blastocystis</italic> has been previously found in vegetables (<xref ref-type="bibr" rid="B1">Al Nahhas and Aboualchamat, 2020</xref>; <xref ref-type="bibr" rid="B36">Li et al., 2020</xref>). Through fine-scale analysis we identified a case of ST3 in humans overlapping with the subtypes found in their rain collection vessels. Presence of <italic>Blastocystis</italic> in an environment, where there is continuous circulation of oxygen supported recently raised hypotheses that this previously considered strictly anaerobic organism tolerates oxygen (<xref ref-type="bibr" rid="B77">Tsaousis et al., 2012</xref>, <xref ref-type="bibr" rid="B76">2018</xref>). Thus, future studies should aim toward investigating additional environments including extreme habitats for the presence of <italic>Blastocystis</italic>.</p>
<p>To that end, we broadened our approach and also explored occurrence of <italic>Blastocystis</italic> in soil. Most collected soil samples were positive for the organism, while ST1, ST3, ST7, ST23, and ST26 were identified. To our knowledge this is the first report of this protist being recorded in natural soil. The presence of <italic>Blastocystis</italic> in the soil could be due to extensive use of animal excrement and intestinal contents (especially from fish), which are typically utilized as garden fertilizer in the community. Nonetheless, while sampling, care was taken to collect from gardens that had not been recently fertilized. Moreover, wildlife hosts roaming the community could also shed <italic>Blastocystis</italic>. This finding suggests a new route of transmission that has been previously overlooked. In that vein, we propose that soil should not only be checked for presence of the organism in future studies, but that it should also be included along with water as a transmission route in the life cycle of <italic>Blastocystis</italic> (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p><italic>Blastocystis</italic> subtype cycling in the rural community studied herein. Subtypes present in all sources are in red font.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmicb-12-746340-g004.tif"/>
</fig>
<p>Comparison of sequences found in different hosts and environments indicated that highly similar strains of ST1 and ST3 are circulating in the community. This suggests a shared <italic>Blastocystis</italic> transmission cycle among humans, animals and the environment for these subtypes. In contrast, ST7 showed an extraordinary amount of diversity with multiple strains distributed within and between hosts and the environment. This indicates that the full extent of ST7 genetic diversity and host range in the community has yet to be captured. Nonetheless a cluster of highly similar strains was found in chicken, pig and buffalo suggesting transmission among the three hosts.</p>
<p>This study has revealed no clear patterns of direct transmission between human-to-human or animal-to-human in this community (<xref ref-type="fig" rid="F4">Figure 4</xref>). Instead, it points out to the existence of multiple independent routes of transmission. Previous efforts investigating <italic>Blastocystis</italic> sources of transmission have been geared toward dissecting dipartite relationships (i.e., animal-to-human or environment-to-human). Results from these studies have enhanced our understanding of the organism and its epidemiology. Nonetheless, they frequently only provide pieces of the overall picture, which remains fragmentary. Here, we have provided a step forward toward integrating a One Health approach to <italic>Blastocystis</italic> by considering both living and non-living sources. In this community, environmental sources comprise the reservoir of <italic>Blastocystis</italic> supplying a multitude of subtypes that circulate in both human and non-human hosts. Our study is pioneer in that we investigated a rural area, while taking into account the community structure and environmental factors toward understanding <italic>Blastocystis</italic> circulation.</p>
<p>Limited sample size does pose a limitation in our study. Specifically, the sample size was low, in particular samples from various animal hosts including stray animals and wildlife. Thus transmission cycles between and within hosts and the environment cannot be precisely deduced at this time.</p>
<p>Moving forward, additional communities both rural and urban should be explored under the One Health umbrella to determine whether similar patterns occur. Using the same approach in a temporal context, future studies should also investigate, whether <italic>Blastocystis</italic> and its various subtypes are true colonizers or passengers. Finally, supplementing One Health-based studies with culturomics and microbiome (pathogenic and non-pathogenic residents of the gut) and metabolome investigations will contribute significantly in uncovering the true roles of <italic>Blastocystis</italic> in gut health and disease.</p>
</sec>
<sec id="S5" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/<xref ref-type="supplementary-material" rid="MS1">Supplementary Material</xref>.</p>
</sec>
<sec id="S6">
<title>Ethics Statement</title>
<p>The studies involving human participants were reviewed and approved by the Ethics Committee of Mae Fah Luang University. The patients/participants provided their written informed consent to participate in this study. The animal study was reviewed and approved by the Ethics Committee of Mae Fah Luang University. Written informed consent for participation was not obtained from the owners because only fecal samples were obtained, there was no invasive procedure involved.</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>VJ: fieldwork, methodology, conceptualization, investigation, and draft writing. SM: methodology. SP: resources and methodology. AT: supervision, validation, and final draft. EG: funding acquisition, project administration, supervision, validation, data curation, and final draft. All authors have read and approved the submitted version of the manuscript.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="pudiscl1" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="S8" sec-type="funding-information">
<title>Funding</title>
<p>This work was funded by the Thailand Research Fund (RSA6080048) awarded to EG. This research and innovation activity was funded by National Research Council of Thailand (NRCT) scholarship (N41D640028) for developing Ph.D. students awarded to VJ. AT would like to thank the Biochemical Society for the visiting grant to establish collaborations with academics from the Mae Fah Luang University (Thailand). SM was supported by a Ph.D. studentship from the Global Challenges Doctoral Centre at the University of Kent. The publication of this work was financially supported by Mae Fah Luang University.</p>
</sec>
<ack>
<p>We wish to thank all the volunteers that participated in this study.</p>
</ack>
<sec id="S10" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2021.746340/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmicb.2021.746340/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.pdf" id="MS1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Material 1</label>
<caption><p>Includes <xref ref-type="supplementary-material" rid="MS1">Supplementary Figures 1</xref>&#x2013;<xref ref-type="supplementary-material" rid="MS1">6</xref>, which are images from the collection sites.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.XLSX" id="MS2" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Material 2</label>
<caption><p>Includes a detailed account of all newly generated sequences.</p></caption>
</supplementary-material>
</sec>
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