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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2021.741842</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The bZIP Transcription Factor LtAP1 Modulates Oxidative Stress Tolerance and Virulence in the Peach Gummosis Fungus <italic>Lasiodiplodia theobromae</italic></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>He</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/345461/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shen</surname>
<given-names>Wanqi</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1409115/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Dongmei</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1469576/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shen</surname>
<given-names>Xingyi</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1469841/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Fan</given-names>
</name>
<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1469874/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hsiang</surname>
<given-names>Tom</given-names>
</name>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/583494/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Liu</surname>
<given-names>Junwei</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/952115/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Li</surname>
<given-names>Guohuai</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="c002" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/345474/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Key Laboratory of Horticultural Plant Biology-Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University</institution>, <addr-line>Wuhan</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences</institution>, <addr-line>Haikou</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Jiangxi Oil-tea Camellia, Jiujiang University</institution>, <addr-line>Jiujiang</addr-line>, <country>China</country></aff>
<aff id="aff4"><sup>4</sup><institution>School of Environmental Sciences, University of Guelph</institution>, <addr-line>Guelph, ON</addr-line>, <country>Canada</country></aff>
<author-notes>
<fn id="fn1" fn-type="edited-by"><p>Edited by: Maria Del Mar Jimenez-Gasco, The Pennsylvania State University (PSU), United States</p></fn>
<fn id="fn2" fn-type="edited-by"><p>Reviewed by: Yi Zhen Deng, South China Agricultural University, China; Valeria Scala, Centro di Ricerca Difesa e Sperimentazione (CREA-DC), Italy</p></fn>
<corresp id="c001">&#x002A;Correspondence: Junwei Liu, <email>junwei.liu@mail.hzau.edu.cn</email>, <ext-link ext-link-type="uri" xlink:href="https://orcid.org/0000-0002-8842-2253">orcid.org/0000-0002-8842-2253</ext-link></corresp>
<corresp id="c002">Guohuai Li, <email>liguohuai@mail.hzau.edu.cn</email>, <ext-link ext-link-type="uri" xlink:href="https://orcid.org/0000-0003-1170-9157">orcid.org/0000-0003-1170-9157</ext-link></corresp>
<fn id="fn3" fn-type="other"><p>This article was submitted to Microbe and Virus Interactions With Plants, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>23</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>741842</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>25</day>
<month>08</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Zhang, Shen, Zhang, Shen, Wang, Hsiang, Liu and Li.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Zhang, Shen, Zhang, Shen, Wang, Hsiang, Liu and Li</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p><italic>Lasiodiplodia theobromae</italic> is one of the primary causal agents in peach gummosis disease, leading to enormous losses in peach production. In our previous study, a redox-related gene, <italic>LtAP1</italic>, from the fungus was significantly upregulated in peach shoots throughout infection. Here, we characterized <italic>LtAP1</italic>, a basic leucine zipper transcription factor, during peach gummosis progression using the CRISPR-Cas9 system and homologous recombination. The results showed that <italic>LtAP1</italic>-deletion mutant had slower vegetative growth and increased sensitivity to several oxidative and nitrosative stress agents. <italic>LtAP1</italic> was highly induced by exogenous oxidants treatment in the <italic>L. theobromae</italic> wild-type strain. In a pathogenicity test, the deletion mutant showed decreased virulence (reduced size of necrotic lesions, less gum release, and decreased pathogen biomass) on infected peach shoots compared to the wild-type strain. The mutant showed severely reduced transcription levels of genes related to glutaredoxin and thioredoxin in <italic>L. theobroame</italic> under oxidative stress or during infection, indicating an attenuated capacity for reactive oxygen species (ROS) detoxification. When shoots were treated with an NADPH oxidase inhibitor, the pathogenicity of the mutant was partially restored. Moreover, ROS production and plant defense response were strongly activated in peach shoots infected by the mutant. These results highlight the crucial role of <italic>LtAP1</italic> in the oxidative stress response, and further that it acts as an important virulence factor through modulating the fungal ROS-detoxification system and the plant defense response.</p>
</abstract>
<kwd-group>
<kwd>AP1 transcription factor</kwd>
<kwd>fungal virulence</kwd>
<kwd><italic>Lasiodiplodia theobromae</italic></kwd>
<kwd>oxidative stress response</kwd>
<kwd>peach gummosis disease</kwd>
<kwd>plant defense response</kwd>
</kwd-group>
<contract-num rid="cn1">2018YFD1000300</contract-num>
<contract-num rid="cn2">31471840</contract-num>
<contract-num rid="cn3">CARS-30</contract-num>
<contract-num rid="cn4">1630092021006</contract-num>
<contract-num rid="cn4">16300920210010</contract-num>
<contract-sponsor id="cn1">China&#x2019;s National Key Research and Development</contract-sponsor>
<contract-sponsor id="cn2">Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content>
</contract-sponsor>
<contract-sponsor id="cn3">China Agriculture Research System of MOF and MARA</contract-sponsor>
<contract-sponsor id="cn4">Chinese Academy of Tropical Agricultural Sciences<named-content content-type="fundref-id">10.13039/501100005206</named-content>
</contract-sponsor>
<counts>
<fig-count count="9"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="43"/>
<page-count count="13"/>
<word-count count="8355"/>
</counts>
</article-meta>
</front>
<body>
<sec id="sec1" sec-type="intro">
<title>Introduction</title>
<p>The necrotrophic fungus, <italic>Lasiodiplodia theobromae</italic>, is geographically widespread in the subtropical and tropical regions and is known to attack approximately 500 plant species, including crops and woody trees (<xref ref-type="bibr" rid="ref2">Alves et al., 2008</xref>; <xref ref-type="bibr" rid="ref7">Cipriano et al., 2015</xref>). This fungus has been regarded as a latent pathogen or an opportunistic pathogen leading to dieback, canker, or fruit rot diseases in many economically important woody crops (<xref ref-type="bibr" rid="ref30">Slippers and Wingfield, 2007</xref>; <xref ref-type="bibr" rid="ref1">Ali et al., 2019</xref>). In southern China, <italic>L. theobromae</italic> is also a causal agent of peach gummosis, one of the most devastating diseases of peach (<italic>Prunus persica</italic>), annually causing considerable quantity and quality losses (<xref ref-type="bibr" rid="ref4">Beckman et al., 2003</xref>; <xref ref-type="bibr" rid="ref39">Wang et al., 2011</xref>). A better understanding of the molecular mechanisms of the peach-<italic>L. theobromae</italic> interaction is necessary for effective control of peach gummosis.</p>
<p>To establish successful infections, pathogens need to overcome both preformed and induced host defenses (<xref ref-type="bibr" rid="ref26">Qi et al., 2017</xref>). During pathogen attacks, one of the major and fastest plant defense responses is a rapid accumulation of reactive oxygen species (ROS) at the invasion site (<xref ref-type="bibr" rid="ref28">Scheler et al., 2013</xref>). ROS, primarily superoxide (<inline-formula><mml:math id="M1"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">O</mml:mi><mml:mn>2</mml:mn><mml:mo>&#x2212;</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) and hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>), are produced by plasma membrane-localized NADPH oxidases, also known as respiratory burst homologs (RBOH), at the inoculation site (<xref ref-type="bibr" rid="ref32">Suzuki et al., 2011</xref>). Due to the toxicity, ROS can cause oxidative stress and damage to biomolecules, such as DNA mutation, lipid peroxidation, and protein oxidation, eventually causing cell death of the pathogens (<xref ref-type="bibr" rid="ref8">De Gara et al., 2003</xref>).</p>
<p>Additionally, as a class of signaling molecules, ROS play crucial roles in plant-pathogen interactions. Plant-derived ROS act as signaling molecules to mediate various important responses of plant cells to fight against pathogen infection and enhance plant resistance by inducing plant defense-related gene expression and activating related enzyme activity (<xref ref-type="bibr" rid="ref37">Torres and Dangl, 2005</xref>; <xref ref-type="bibr" rid="ref3">Baxter et al., 2014</xref>). Our previous study demonstrated that the infection by <italic>L. theobromae</italic> caused a ROS burst, and transcripts of pathogenesis-related (<italic>PR</italic>) genes were markedly induced, potentially contributing to the restriction of disease development (<xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>).</p>
<p>To survive and colonize under harsh conditions, pathogens have developed ROS scavenging systems to efficiently reclaim excess ROS (<xref ref-type="bibr" rid="ref29">Segal and Wilson, 2018</xref>). Scavenging enzymatic and non-enzymatic compounds, either preformed or induced, include superoxide dismutase (SOD), catalases (CAT), peroxidases (POD), glutaredoxins, and thioredoxins (<xref ref-type="bibr" rid="ref12">Kawasaki et al., 1997</xref>; <xref ref-type="bibr" rid="ref14">Lanfranco et al., 2005</xref>; <xref ref-type="bibr" rid="ref21">Ma et al., 2018</xref>). The glutaredoxin system has glutathione, glutathione peroxidase (GPX), glutathione reductase (GLR), and NADPH. The thioredoxin machinery includes thioredoxin peroxidase [equal to thiol-specific antioxidant protein (TSA)], thioredoxin reductase (TRR), thioredoxins (TRX), and NADPH (<xref ref-type="bibr" rid="ref21">Ma et al., 2018</xref>; <xref ref-type="bibr" rid="ref42">Zhang et al., 2019</xref>). In fungal pathogens, transcription factor-mediated ROS detoxification through the regulation of antioxidant genes expression is vital in plant-pathogen interactions. One of the critical regulators mediating ROS detoxification is the Activating Protein 1 (AP1) class of basic leucine zipper (bZIP) family (<xref ref-type="bibr" rid="ref29">Segal and Wilson, 2018</xref>). AP1 is a key transcriptional activator in response to oxidative stress in yeasts and filamentous fungi (<xref ref-type="bibr" rid="ref27">Reverberi et al., 2008</xref>; <xref ref-type="bibr" rid="ref19">Lin et al., 2018</xref>; <xref ref-type="bibr" rid="ref29">Segal and Wilson, 2018</xref>). In our previous study, the <italic>LtAP1</italic> gene was consistently and highly expressed in the infection stage of <italic>L. theobromae</italic> on peach shoots, implying that <italic>LtAP1</italic> may play a crucial role in the pathogenicity of <italic>L. theobromae</italic> (<xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>).</p>
<p><italic>Saccharomyces cerevisiae</italic> YAP1 serves as one of the most critical determinants of yeast to oxidative stress response, which is responsible for transcriptional activation of various ROS detoxification-related genes (<xref ref-type="bibr" rid="ref23">Mendoza-Mart&#x00ED;nez et al., 2020</xref>). Subsequently, YAP1 homologs in several fungal pathogens were identified and characterized, and found to have conserved roles in oxidative stress response and tolerance, but differed in virulence. YAP1-mediated ROS detoxification has been identified as being an essential virulence determinant in the necrotrophic fungus <italic>Alternaria alternata</italic> (<xref ref-type="bibr" rid="ref18">Lin et al., 2009</xref>), the hemibiotrophic rice blast fungus <italic>Magnaporthe oryzae</italic> (<xref ref-type="bibr" rid="ref11">Guo et al., 2011</xref>), and the biotrophic maize pathogen <italic>Ustilago maydis</italic> (<xref ref-type="bibr" rid="ref24">Molina and Kahmann, 2007</xref>). However, YAP1-assisted ROS detoxification is associated with avirulence in the animal pathogen <italic>Aspergillus fumigatus</italic> (<xref ref-type="bibr" rid="ref15">Lessing et al., 2007</xref>), the necrotrophic plant pathogen <italic>Cochliobolus heterostrophus</italic> (<xref ref-type="bibr" rid="ref16">Lev et al., 2005</xref>), or the hemibiotrophic plant pathogen <italic>Fusarium graminearum</italic> (<xref ref-type="bibr" rid="ref25">Montibus et al., 2013</xref>). Although many studies have examined YAP1 homologs in other fungi, their function in <italic>L. theobromae</italic> during pathogenesis remains poorly understood, particularly for canker or gummosis disease in woody fruit trees. Understanding the role of the <italic>LtAP1</italic> gene in <italic>L. theobromae</italic> may lead to new tools to develop novel, sustainable disease management strategies against peach gummosis.</p>
<p>In this study, transcription factor LtAP1 was isolated and functionally characterized through genetic transformation. We examined the effects of deletion of the <italic>LtAP1</italic> gene on mycelial growth, sensitivity to oxidative and nitrosative stresses, and pathogenicity. This study shed some light on the function of the <italic>LtAP1</italic> gene for ROS detoxification, virulence, and suppression of plant defense responses during <italic>L. theobromae</italic> and peach interaction, which could deepen our knowledge of the role of fungal YAP1s in plant diseases.</p>
</sec>
<sec id="sec2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="sec3">
<title>Fungal Strains, Culture Conditions, and Chemical Treatments</title>
<p><italic>Lasiodiplodia theobromae</italic> pathogenic strain JMB122, obtained from a peach tree with gummosis in Hubei Province, China (<xref ref-type="bibr" rid="ref39">Wang et al., 2011</xref>), was used as a recipient host for transformation experiments. Both JMB122 and its derivatives were cultured on PDA medium (200gL<sup>&#x2212;1</sup> potato, 20gL<sup>&#x2212;1</sup> dextrose, and 15gL<sup>&#x2212;1</sup> agar) in a growth chamber at 28&#x00B0;C for 36h under a 12h-light/12h-dark cycle to assess growth and colony characteristics.</p>
<p>To test stress treatments, the wild type (WT) and genetic transformants of JMB122 were cultured on PDA plates (diameter 9cm) containing various chemical reagents. The integrity of cell walls and cell membranes was examined on PDA supplemented with calcofluor white (CFW; 0.05mgml<sup>&#x2212;1</sup>), Congo red (2.5mgml<sup>&#x2212;1</sup>), or sodium dodecyl sulfate (SDS; 0.02%). For oxidative stress, PDA was amended with H<sub>2</sub>O<sub>2</sub> (1 or 2.5mm), <italic>tert</italic>-butyl-hydroperoxide (TBHP; 0.5mm), cumene H<sub>2</sub>O<sub>2</sub> (0.68mm), or menadione (0.1mm). For nitrosative stress, PDA was amended with sodium nitroferricyanide dihydrate (SNP; 5mm). PDA was supplemented with glucose (1M) or KCl (1 M) for osmotic stress. PDA without amendments was used as control. Mycelial plugs (5mm diameter) were removed from the edge of 2-day-old colonies of each isolate and placed hyphal side down into the center of PDA plates. After 36h, the colony diameter was measured using a digital caliper, with four measurements from each plate. The growth inhibition rate (%) was calculated using the following formula: (diameter of untreated colony grown on PDA &#x2013; diameter of colony grown on PDA with inhibitor treatment)/ diameter of untreated colony grown on PDA&#x00D7;100%.</p>
<p>As for the NADPH oxidase inhibitor diphenylene iodonium (DPI), the <italic>L. theobromae</italic>-inoculated shoots were treated with 5ml of DPI [dissolved in dimethyl sulfoxide (DMSO) and then diluted with water] at a concentration of 0.4&#x03BC;m at 12 and 24h after inoculation. Some inoculated peach shoots were mock treated with 0.04% DMSO. All the assays were independently performed in triplicate.</p>
</sec>
<sec id="sec4">
<title>RNA Extraction, cDNA Synthesis, and Gene Expression</title>
<p>RNA extraction, cDNA synthesis, and gene expression were conducted following <xref ref-type="bibr" rid="ref43">Zhang et al. (2020)</xref>. The two genes, translation elongation factor 2 (<italic>PpTEF2</italic>; <xref ref-type="bibr" rid="ref10">Gao et al., 2016</xref>; <xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>) and tubulin (<italic>LtTUB</italic>; <xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>), were used as internal standards to normalize gene transcripts of <italic>L. theobromae</italic> and peach, respectively. The primers used for quantitative real-time PCR (qRT-PCR) are detailed in <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>. The relative expression was calculated using the comparative 2<sup>&#x2212;&#x0394;&#x0394;CT</sup> method (<xref ref-type="bibr" rid="ref20">Livak and Schmittgen, 2001</xref>) and expressed as means &#x00B1; SD. The experiments were conducted with three independent biological replicates, each with four technical replicates.</p>
</sec>
<sec id="sec5">
<title>Gene Cloning and Identification</title>
<p>For cloning and identification of <italic>LtAP1</italic>, the strain JMB122 was cultured on PDA plates for 36h, and then the hyphae were collected for genomic DNA extraction following <xref ref-type="bibr" rid="ref39">Wang et al. (2011)</xref>. The putative LtAP1 protein sequences were obtained using orthologs of AP1 protein sequences of <italic>S. cerevisiae</italic> (<xref ref-type="bibr" rid="ref13">Kuge and Jones, 1994</xref>) and <italic>M. oryzae</italic> (<xref ref-type="bibr" rid="ref11">Guo et al., 2011</xref>) as BLASTP queries against the <italic>L. theobromae</italic> genome assembly (<xref ref-type="bibr" rid="ref9">F&#x00E9;lix et al., 2019</xref>), and one putative LtAP1-encoding gene was obtained from the genome assembly of <italic>L. theobromae</italic>. To confirm the presence of <italic>LtAP1</italic> in JMB122, the full length of <italic>LtAP1</italic> was amplified by PCR with primers FD120/FD121 (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). Open reading frames (ORF) and exon/intron positions in <italic>LtAP1</italic> were determined by comparison with <italic>LtAP1</italic> genomic DNA and cDNA sequences.</p>
<p>The predicted LtAP1 protein sequences from JMB122 were used to find orthologs in GenBank. The protein sequences of LtAP1 and its orthologs from various fungal species were aligned using Clustal X 1.81 (<xref ref-type="bibr" rid="ref36">Thompson et al., 1997</xref>), and then, a phylogenetic tree was constructed using the neighbor-joining method with 1,000 bootstrap replications in MEGA 6.0 software (<xref ref-type="bibr" rid="ref34">Tamura et al., 2013</xref>).</p>
</sec>
<sec id="sec6">
<title>Targeted Gene Disruption</title>
<p>The <italic>LtAP1</italic> knockout transformants were obtained using homologous recombination and the CRISPR/Cas9 approach (<xref ref-type="bibr" rid="ref21">Ma et al., 2018</xref>; <xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>). The upstream (1,688bp) and downstream (1,722bp) fragments of the <italic>LtAP1</italic> gene of strain JMB122 and a fragment of the hygromycin B resistance phosphotransferase gene (<italic>HPH</italic>, 1,423bp) cassette in the pBHt2 vector were amplified separately. As illustrated in <xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S1</xref>, a 5&#x2032; fragment of <italic>LtAP1</italic> (1,722bp) amplified with primers 1F/1R was fused with an HY/g (917bp) fragment amplified with primers 2F/2R to generate a construct 5&#x2032;LtAP1::HY/g; meanwhile, a 3&#x2032; fragment of <italic>LtAP1</italic> (1,722bp) amplified with primers 4F/4R was fused with a h/YG (966bp) fragment amplified with primers 3F/3R to produce a construct h/YG::3&#x2032;LtAP1. As shown in <xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S2</xref>, the pmCas9 empty vector was digested with <italic>Esp</italic>3I FastDigest (Thermo scientific, United States). A 20bp fragment ahead of NGG in the exon region of <italic>LtAP1</italic> was selected for single-guide RNA (sgRNA) design, and its specificity was tested against the <italic>L. theobromae</italic> genome assembly. The sgRNA sequence was synthesized using primers adapted with sticky ends at the 5&#x2032; end (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>), then inserted into the digested pmCas9 vector by T4 DNA ligase (Thermo Scientific, United States). The inserts in plasmids were then confirmed by sequencing.</p>
<p>Subsequently, two constructs (5&#x2032;LtAP1::HY/g and h/YG::3&#x2032;LtAP1) and pmCas9-LtAP1 were mixed and co-transformed into protoplasts prepared from JMB122 using the polyethylene glycol method to create <italic>LtAP1</italic> deletion mutant <italic>&#x0394;Ltap1</italic>. The transformants were recovered from a regeneration medium (342gL<sup>&#x2212;1</sup> sucrose, 1gL<sup>&#x2212;1</sup> yeast extract, 1gL<sup>&#x2212;1</sup> casein hydrolysate, and 20gL<sup>&#x2212;1</sup> agar) containing 150&#x03BC;gml<sup>&#x2212;1</sup> hygromycin B (Roche, Switzerland). The <italic>&#x0394;Ltap1</italic> transformants were continuously selected on hygromycin B plates for two generations and verified by PCR.</p>
</sec>
<sec id="sec7">
<title>Genetic Complementation</title>
<p>The complementation strains were obtained using homologous recombination (<xref ref-type="bibr" rid="ref21">Ma et al., 2018</xref>). As displayed in <xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S1</xref>, the full-length ORF of <italic>LtAP1</italic> carrying its native promoter region (1,500bp genomic sequence upstream of the ATG start codon) but without stop codon was amplified with primers 8F/8R from genomic DNA of strain JMB122 and used for genetic complementation of <italic>&#x0394;Ltap1</italic>. The amplified PCR fragment was fused with a neomycin resistance gene (<italic>NEO</italic>) cassette under the control of the <italic>Aspergillus nidulans trpC</italic> promoter and terminator, conferring resistance to G418 from plasmid pCETNS. The <italic>LtAP1::NEO</italic> construct was transformed into protoplasts prepared from the mutant <italic>&#x0394;Ltap1-8</italic>. The resultant transformants were recovered from the medium amended with 100mgml<sup>&#x2212;1</sup> G418 (Sigma, United States) and screened by PCR with primers 5F/5R.</p>
</sec>
<sec id="sec8">
<title>Virulence Assay</title>
<p>The virulence assay was conducted as previously described (<xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>). The lesion sizes were recorded 5days post-inoculation (dpi). Green bark tissues within 0.5&#x2013;1.0cm of a wound site were sampled, and immediately placed in liquid nitrogen and stored at &#x2212;80&#x00B0;C until further analysis. Relative amounts of fungal DNA represented by cycle threshold of <italic>L. theobromae</italic> internal transcribed spacer 1 (LtITS1) were compared to peach-derived elongation factor 1&#x03B1; (<italic>PpEF1&#x03B1;</italic>, reference gene) using the comparative cycle threshold (2<sup>&#x2212;&#x0394;&#x0394;CT</sup>) method (<xref ref-type="bibr" rid="ref33">Svetaz et al., 2017</xref>). The primers are shown in <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>. Each treatment was tested on 15 peach shoots, and the virulence assay was independently repeated three times.</p>
</sec>
<sec id="sec9">
<title>Measurement of Superoxide Anion and Hydrogen Peroxide</title>
<p>Absorbance was measured on a spectrophotometer (UV-2450, Shimadzu, Japan). The amount of superoxide anion (<inline-formula><mml:math id="M2"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">O</mml:mi><mml:mn>2</mml:mn><mml:mo>&#x2212;</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) and H<sub>2</sub>O<sub>2</sub> was measured following <xref ref-type="bibr" rid="ref43">Zhang et al. (2020)</xref>. Absorbance at 530nm was recorded to calculate the <inline-formula><mml:math id="M3"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">O</mml:mi><mml:mn>2</mml:mn><mml:mo>&#x2212;</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> content expressed in nmol g<sup>&#x2212;1</sup> FW. The absorbance levels of H<sub>2</sub>O<sub>2</sub> (mmolg<sup>&#x2212;1</sup> FW) were recorded at 415nm.</p>
</sec>
<sec id="sec10">
<title>Statistical Analysis</title>
<p>Data were subjected to ANOVA at <italic>p</italic> &#x003C;0.05. The student&#x2019;s <italic>t</italic>-test was used to test for significant differences of two-sample treatments at <italic>p</italic> &#x003C;0.05 or <italic>p</italic> &#x003C;0.01. Duncan&#x2019;s multiple range test (<italic>p</italic> &#x003C;0.05) was used to separate means when there were more than three treatments, and a significant difference was found in the ANOVA.</p>
</sec>
</sec>
<sec id="sec11" sec-type="results">
<title>Results</title>
<sec id="sec12">
<title>Cloning and Identification of <italic>LtAP1</italic>, a YAP1 Homolog in <italic>Lasiodiplodia theobromae</italic></title>
<p>The <italic>LtAP1</italic> genomic DNA and cDNA sequences were obtained using primer set FD120/FD121 with the genomic DNA and cDNA of strain JMB122 as templates. The results showed that the <italic>LtAP1</italic> gene contained a 1,945bp coding sequence with a 47bp intron. The <italic>LtAP1</italic> gene (deposited in GenBank with accession number MN933613.1) was predicted to encode a 612 amino acid-long protein that displayed 46 and 43% overall identity with ScYAP1 and MoAP1, respectively. Multiple sequence alignment revealed that AP1s had widely conserved domains: an N-terminal bZIP DNA-binding domain and a nuclear export signal (NES) embedded in a C-terminal cysteine-rich domain (c-CRD; <xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S3</xref>). Phylogenetic analysis (<xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S4</xref>) demonstrated that AP1-like proteins were evolutionarily conserved among filamentous fungi and separated from the ScAP1 clade. The LtAP1 amino acid sequence had 56% identity with the AP1 homolog in <italic>Alternaria alternata</italic> (<xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S4</xref>).</p>
</sec>
<sec id="sec13">
<title>Generation of <italic>LtAP1</italic> Deletion and Complementation Strains</title>
<p>To investigate the biological function of <italic>LtAP1</italic>, we knocked out the gene. The mutants were confirmed by PCR. The primers 6F/6R and 7F/7R amplified two DNA fragments of 2,747 and 2,714bp, respectively, from genomic DNA of the obtained <italic>&#x0394;Ltap1</italic> transformants, while no fragment was obtained from the WT strain, indicating that the <italic>LtAP1</italic> gene was successfully deleted and replaced by the <italic>HYG</italic> gene in the <italic>&#x0394;Ltap1</italic> transformants (<xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S5</xref>). Furthermore, the authenticity of transformants was screened by PCR with primers 5F/5R, and no fragment was amplified, indicating that these transformants were positive deletion mutants. We obtained seven positive transformants, and two (<italic>&#x0394;Ltap1-8</italic> and <italic>-10</italic>) were analyzed further.</p>
<p>A 1,178 fragment was amplified from the genomic DNA of complemented strains using primer set 5F/5R, while no fragment was obtained from the knockout transformants, indicating that the WT allele could be re-introduced into the <italic>&#x0394;Ltap1</italic> transformants to generate complemented strains (<xref ref-type="supplementary-material" rid="SM2">Supplementary Figure S5</xref>). We obtained six strains, and strain <italic>&#x0394;Ltap1/</italic>AP1 was used in further analyses.</p>
</sec>
<sec id="sec14">
<title>The Role of <italic>LtAP1</italic> in Mycelial Growth</title>
<p>The mycelial growth rate of <italic>&#x0394;Ltap1</italic> mutant lines was reduced by 30% compared to the WT strain (<xref rid="fig1" ref-type="fig">Figure 1C</xref>). As well, the <italic>&#x0394;Ltap1</italic> mutant showed apparent defects in radial growth and aerial hyphal (<xref rid="fig1" ref-type="fig">Figures 1A</xref>,<xref rid="fig1" ref-type="fig">B</xref>). In contrast, both phenotypes were recovered in the <italic>&#x0394;Ltap1/</italic>AP1 strain. The result indicated that the loss of <italic>LtAP1</italic> impaired the vegetative growth of <italic>L. theobromae</italic>.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption><p>Effect of <italic>LtAP1</italic> deletion on the mycelial growth of <italic>Lasiodiplodia theobromae</italic>. Morphological visualization of fungal colony <bold>(A)</bold>, aerial hyphae growth <bold>(B)</bold>, and diameter quantification <bold>(C)</bold> of the colony growth of WT (wild type), two <italic>&#x0394;Ltap1</italic> deletion mutants (<italic>&#x0394;Ltap1-8</italic> and <italic>-10</italic>), and the <italic>&#x0394;Ltap1/</italic>AP1 complementary strain after 36h at 28&#x00B0;C in darkness. Different letters on top of bars represent a statistically significant differences at <italic>p</italic>&#x003C;0.05. Bars show mean growth averaged across three biological replicates, and error bars represent standard deviation.</p></caption>
<graphic xlink:href="fmicb-12-741842-g001.tif"/>
</fig>
</sec>
<sec id="sec15">
<title>Effect of <italic>LtAP1</italic> on Response to Different Exogenous Stresses</title>
<p>To evaluate whether <italic>LtAP1</italic> can mediate adaptation to exogenous stress, we inoculated mycelial plugs of different genotypes on PDA plates containing cell wall damaging agents (Congo red or CFW), osmotic stress agents (KCl, sorbitol, or glucose), and a cell membrane damaging agent (SDS). After 36h, the mycelial growth in <italic>&#x0394;Ltap1</italic> mutants was significantly reduced in Congo red-, KCl-, sorbitol-, glucose-, and CFW-treated plates, while the diameter of <italic>&#x0394;Ltap1</italic> mutants was significantly increased in sorbitol- and glucose-amended PDA plates compared to the WT (<xref rid="fig2" ref-type="fig">Figure 2</xref>). No significant difference was observed for sensitivity to SDS between <italic>&#x0394;Ltap1</italic> mutants and the WT (<xref rid="fig2" ref-type="fig">Figure 2</xref>). In all cases, the mycelial morphology and colony diameter of <italic>&#x0394;Ltap1/</italic>AP1 under exogenous stress treatments were restored to the WT level (<xref rid="fig2" ref-type="fig">Figure 2</xref>).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption><p>Mycelial growth of the <italic>L. theobromae</italic> WT and mutants in response to stress treatments. <bold>(A)</bold> Cultures of the WT, two <italic>&#x0394;Ltap1</italic> deletion mutants and the <italic>&#x0394;Ltap1/</italic>AP1 strain, grown on PDA media supplemented with 2.5mgml<sup>&#x2212;1</sup> Congo red, 1M KCl, 0.02% SDS, 1M sorbitol, 1M glucose, and 0.05mgml<sup>&#x2212;1</sup> calcofluor white (CFW) or water (mock) at indicated concentrations after 36h. <bold>(B)</bold> Percent growth inhibition of WT and mutants on PDA with the inhibitors. Different letters on top of bars represent a statistically significant differences at <italic>p</italic>&#x003C;0.05. Bars show mean inhibition of growth rate averaged across three biological replicates, and error bars represent standard deviation.</p></caption>
<graphic xlink:href="fmicb-12-741842-g002.tif"/>
</fig>
<p>When exposed to H<sub>2</sub>O<sub>2</sub>, cumene H<sub>2</sub>O<sub>2</sub>, TBHP, and menadione treatments, the <italic>&#x0394;Ltap1</italic> mutants were much more sensitive to 2.5mm H<sub>2</sub>O<sub>2</sub>, 0.68mm cumene H<sub>2</sub>O<sub>2</sub>, 0.5mm TBHP, and 0.1mm menadione than the WT (<xref rid="fig3" ref-type="fig">Figures 3A</xref>,<xref rid="fig3" ref-type="fig">B</xref>). The <italic>&#x0394;Ltap1</italic> mutants showed a substantial growth reduction compared to the WT at 36hpi, with more than 90% reduction in H<sub>2</sub>O<sub>2</sub> and TBHP treatments, and approximately 60% reduction in cumene H<sub>2</sub>O<sub>2</sub> and menadione treatments (<xref rid="fig3" ref-type="fig">Figure 3B</xref>). In the <italic>&#x0394;Ltap1/</italic>AP1 strain, the stress resistance of strain JMB122 was rescued to the WT level (<xref rid="fig3" ref-type="fig">Figure 3</xref>). Further, we tested the transcriptional change of <italic>LtAP1</italic> in WT to exogenous oxidants H<sub>2</sub>O<sub>2</sub> and TBHP treatment. When compared with untreated mycelia at the initial time point, exposure to 2.5mm H<sub>2</sub>O<sub>2</sub> increased the transcripts of <italic>LtAP1</italic> quickly at 15min, peaking at 45min, followed by a sharp reduction to the end of monitoring (120min; <xref rid="fig3" ref-type="fig">Figure 3C</xref>). Similarly, the expression of <italic>LtAP1</italic> was upregulated rapidly but peaked at 30min under 0.5mm TBHP treatment (<xref rid="fig3" ref-type="fig">Figure 3D</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption><p>Defects of <italic>LtAP1</italic> on the response of <italic>L. theobromae</italic> to oxidative stress. <bold>(A)</bold> Mycelial growth of WT, two deletion strains and the complementary strain <italic>&#x0394;Ltap1/</italic>AP1, cultured on PDA media amended with oxidants 2.5mm H<sub>2</sub>O<sub>2</sub>, 0.68mm cumene H<sub>2</sub>O<sub>2</sub>, 0.5mm <italic>tert</italic>-butyl-hydroperoxide (TBHP), and 0.1mm menadione or water (mock) at the indicated concentrations after 36h. <bold>(B)</bold> Inhibition rate of fungal growth on PDA with oxidants compared with PDA without stress exposure. Different letters on top of bars represent a statistically significant differences at <italic>p</italic>&#x003C;0.05. Bars show mean inhibition of growth rate averaged across three biological replicates, and error bars represent standard deviation. <bold>(C,D)</bold> Time-course response of <italic>LtAP1</italic> transcripts to H<sub>2</sub>O<sub>2</sub> or TBHP exposure. Transcript levels were normalized with reference gene <italic>LtTUB</italic> and are displayed relative to the transcript level in samples at time zero (which was therefore set to one). Asterisks indicate the significant difference relative to the initial point (0min) at <italic>p</italic>&#x003C;0.01. Values are means &#x00B1; SD of three biological and three technical replicates.</p></caption>
<graphic xlink:href="fmicb-12-741842-g003.tif"/>
</fig>
<p>Additionally, we also tested the involvement of <italic>LtAP1</italic> in nitrosative stress tolerance. The mycelial growth of the <italic>&#x0394;Ltap1</italic> strain was significantly reduced in the SNP treatment compared with the WT (<xref rid="fig4" ref-type="fig">Figure 4</xref>). Moreover, the growth inhibition of the <italic>&#x0394;Ltap1</italic> mutant was higher in the treatments with SNP and H<sub>2</sub>O<sub>2</sub> together than in the single treatments with SNP or H<sub>2</sub>O<sub>2</sub> (<xref rid="fig4" ref-type="fig">Figure 4</xref>).</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption><p>Involvement of <italic>LtAP1</italic> of <italic>L. theobromae</italic> in response to nitro-oxidative stress. <bold>(A)</bold> Fungal growth of WT and the deletion mutant strain <italic>&#x0394;Ltap1</italic> cultured on PDA stressed with 1mm H<sub>2</sub>O<sub>2</sub> and/or 5mm Sodium nitroferricyanide dihydrate (SNP), or water (mock) at the indicated concentration after 36h. <bold>(B)</bold> Inhibition rate of fungal growth on PDA with stress treatment in relation to the mock. Values are means &#x00B1; SD of three biological replicates. Different letters on top of paired bars represent a statistically significant difference at <italic>p</italic>&#x003C;0.05.</p></caption>
<graphic xlink:href="fmicb-12-741842-g004.tif"/>
</fig>
</sec>
<sec id="sec16">
<title>Pathogenicity of the <italic>LtAP1</italic> Mutant Strain on Peach Shoots</title>
<p>Pathogenicity assays on detached current-year peach shoots revealed that the <italic>&#x0394;Ltap1</italic> strains caused small brown necrotic lesions and invisible gum release at the site of fungal inoculation, when compared with the WT at 5 dpi, the last observation time (<xref rid="fig5" ref-type="fig">Figure 5A</xref>). The <italic>&#x0394;Ltap1</italic>/AP1 induced necrotic lesions at a rate and magnitude comparable to the WT (<xref rid="fig5" ref-type="fig">Figure 5A</xref>). Quantitative analysis demonstrated that the size of lesions induced by the <italic>&#x0394;Ltap1</italic> mutants was about 43% of that caused by the WT (<xref rid="fig5" ref-type="fig">Figure 5B</xref>). Furthermore, the relative fungal biomass (as revealed by qPCR) in infected peach shoots of the <italic>&#x0394;Ltap1</italic> mutants was significantly less than that of the WT (<xref rid="fig5" ref-type="fig">Figure 5C</xref>). The lesion sizes and fungal biomass in the <italic>&#x0394;Ltap1</italic>/AP1 strain-inoculated peach shoots were rescued to WT levels (<xref rid="fig5" ref-type="fig">Figures 5B</xref>,<xref rid="fig5" ref-type="fig">C</xref>).</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption><p>Virulence test of the <italic>LtAP1</italic> mutants into peach shoots. <bold>(A)</bold> Peach gummosis progression in the detached shoots inoculated with different genotypes of <italic>L. theobromae</italic> (WT, two deletion mutants, and the complementary strain <italic>&#x0394;Ltap1</italic>/AP1) at 5 dpi. Bar represents 5mm. <bold>(B)</bold> Quantification of lesion size on inoculated peach shoots. <bold>(C)</bold> Quantitative real-time PCR (qRT-PCR) analysis of <italic>L. theobromae</italic> amounts in the infected peach shoots. In panels, different letters on top of bars indicate statistically significant differences at <italic>p</italic>&#x003C;0.05.</p></caption>
<graphic xlink:href="fmicb-12-741842-g005.tif"/>
</fig>
</sec>
<sec id="sec17">
<title>Effect of <italic>LtAP1</italic> Deficiency on ROS Accumulation in Infected Peach Shoots</title>
<p>To test the involvement of <italic>LtAP1</italic> in scavenging ROS, <inline-formula><mml:math id="M4"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">O</mml:mi><mml:mn>2</mml:mn><mml:mo>&#x2212;</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and H<sub>2</sub>O<sub>2</sub> contents were measured in peach shoots infected by <italic>&#x0394;Ltap1</italic> mutant or WT at 5 dpi. Both <inline-formula><mml:math id="M5"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">O</mml:mi><mml:mn>2</mml:mn><mml:mo>&#x2212;</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and H<sub>2</sub>O<sub>2</sub> contents were significantly increased, respectively, with 1.1- and 2.6-fold higher levels in the <italic>&#x0394;Ltap1</italic> mutant-inoculated shoots than the controls (<xref rid="fig6" ref-type="fig">Figures 6A</xref>,<xref rid="fig6" ref-type="fig">B</xref>). Furthermore, we tested whether <italic>LtAP1</italic> was involved in the regulation of ROS production during infection. The transcripts of core ROS production-related genes, <italic>PpRBOHs</italic>, were examined. Our data showed that the expression levels of both <italic>PpRBOHD</italic> and <italic>PpRBOHF</italic> were significantly higher in shoots inoculated with <italic>&#x0394;Ltap1</italic> mutant than the WT (<xref rid="fig6" ref-type="fig">Figures 6C</xref>,<xref rid="fig6" ref-type="fig">D</xref>).</p>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption><p>Effect of <italic>LtAP1</italic> deficiency on ROS generation and its related genes transcripts in infected peach shoots. <bold>(A,B)</bold>: Accumulation of superoxide anion and hydrogen peroxide in peach shoots inoculated with <italic>L. theobromae</italic> WT or <italic>&#x0394;Ltap1</italic> mutant at 5 dpi. <bold>(C, D)</bold>: Transcript abundance of ROS production-related genes <italic>PpRBOHD</italic> and <italic>PpRBOHF</italic> in infected peach shoots at 5 dpi. Relative transcript levels of genes compared with that of the control using reference gene <italic>PpTEF2</italic> for normalization. All data are means &#x00B1; SD of three biological replicates. Asterisks indicate the significant difference between two genotypes for the same parameter comparison at <italic>p</italic>&#x003C;0.01.</p></caption>
<graphic xlink:href="fmicb-12-741842-g006.tif"/>
</fig>
</sec>
<sec id="sec18">
<title>Effects of Prevention of ROS Generation on Pathogenicity of the <italic>LtAP1</italic> Mutants</title>
<p>To elucidate the role of LtAP1-modulating oxidative stress tolerance in fungal pathogenicity, an NADPH oxidase inhibitor, DPI, was used in virulence testing of the <italic>&#x0394;Ltap1</italic> mutants. We observed that the <italic>&#x0394;Ltap1</italic> mutants induced much larger brown necrotic lesions and more visible gum release in the DPI-treated shoots than the mock-treated ones at 5 dpi (<xref rid="fig7" ref-type="fig">Figures 7A</xref>,<xref rid="fig7" ref-type="fig">B</xref>). Moreover, in the DPI-treated shoots, the size of lesions induced by the <italic>&#x0394;Ltap1</italic> mutants was only about 79% of that caused by the WT (<xref rid="fig7" ref-type="fig">Figure 7B</xref>).</p>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption><p>Impact of diphenylene iodonium (DPI) on pathogenicity of <italic>LtAP1</italic> mutants. <bold>(A)</bold>: Symptom of different genotypes of <italic>L. theobroame</italic>-inoculated peach shoots was treated with 0.4&#x03BC;m DPI [dissolved in dimethyl sulfoxide (DMSO) and then diluted with water; an NADPH oxidase inhibitor] or not (mock, 0.04% DMSO) at 5 dpi. Bar represents 5mm. <bold>(B)</bold> Quantification of lesion size in infected shoots. All data are means &#x00B1; SD of three biological replicates. Different letters indicate the significant difference at <italic>p</italic>&#x003C;0.05.</p></caption>
<graphic xlink:href="fmicb-12-741842-g007.tif"/>
</fig>
</sec>
<sec id="sec19">
<title>Role of <italic>LtAP1</italic> in the Expression of ROS Detoxification-Related Genes in <italic>L. theobromae</italic></title>
<p>To identify genes regulated by LtAP1, the transcripts of genes related to antioxidants (glutaredoxin and thioredoxin) were analyzed in the WT and the <italic>&#x0394;Ltap1</italic> mutant exposed to 2.5mm H<sub>2</sub>O<sub>2</sub> or distilled water for 1h. Relative transcripts of the core genes of both the glutaredoxin system (<italic>LtGPX3</italic> and <italic>LtGLR1</italic>) and the thioredoxin system (<italic>LtTRX2</italic>, <italic>LtTSA1</italic>, and <italic>LtTRR1</italic>) were significantly lower in the <italic>&#x0394;Ltap1</italic> mutant in the absence of H<sub>2</sub>O<sub>2</sub> (<xref rid="fig8" ref-type="fig">Figure 8A</xref>). Under H<sub>2</sub>O<sub>2</sub> treatment, the expression of all tested genes was consistently and significantly further decreased to 68 to 100% in the <italic>&#x0394;Ltap1</italic> mutant, as compared to the WT (<xref rid="fig8" ref-type="fig">Figure 8B</xref>).</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption><p>qRT-PCR analysis of the glutaredoxin and thioredoxin systems genes in the WT, <italic>LtAP1</italic> deletion mutant under H<sub>2</sub>O<sub>2</sub> treatment and in infected peach shoots. Mycelial samples of WT and the deletion mutant <italic>&#x0394;Ltap1</italic> treated with water <bold>(A)</bold> and 2.5mm H<sub>2</sub>O<sub>2</sub> <bold>(B)</bold> were collected after 1h culture at 28&#x00B0;C in darkness. <bold>(C)</bold> RNA samples were collected from the border of <italic>L. theobromae</italic>-colonized peach shoots at 5 dpi. The transcript levels were normalized with <italic>LtTUB</italic> and are displayed in relation to the transcript levels in the corresponding WT samples (which was therefore set to one). The values are means &#x00B1; SD of three biological replicates. Asterisks indicate significant differences for genes between two genotypes, with <sup>&#x002A;</sup><italic>p</italic>&#x003C;0.01 and <sup>&#x002A;&#x002A;</sup><italic>p</italic>&#x003C;0.05.</p></caption>
<graphic xlink:href="fmicb-12-741842-g008.tif"/>
</fig>
<p>To further elucidate the possible mechanism behind the impairment of oxidative stress response and pathogenicity in the <italic>&#x0394;Ltap1</italic> mutant, transcript levels of genes in the glutaredoxin and thioredoxin systems were assayed for <italic>&#x0394;Ltap1</italic> or WT infected tissues. Indeed, the inactivation of <italic>LtAP1</italic> led to significant reductions of all tested genes expression, ranging from 49 to 90% in the shoots inoculated with <italic>&#x0394;Ltap1</italic> relative to the WT at 5 dpi (<xref rid="fig8" ref-type="fig">Figure 8C</xref>).</p>
</sec>
<sec id="sec20">
<title>Effect of <italic>LtAP1</italic> Deletion on Plant Defense Response</title>
<p>ROS often act as signaling molecules to activate defense-related genes, such as pathogenesis-related (<italic>PR</italic>) genes, to enhance plant defense response (<xref ref-type="bibr" rid="ref5">Camejo et al., 2016</xref>). To further assess whether <italic>PR</italic> genes were activated by the <italic>&#x0394;Ltap1</italic> mutant inoculation, transcripts of several <italic>PR</italic> genes, including <italic>PpPR1a</italic>, <italic>PpPR8</italic>, <italic>PpPR10-1</italic>, <italic>PpPR10-4</italic>, <italic>PpDFN1</italic> (Defensin 1, PR12 family), and <italic>PpLTP1</italic> (Lipid-transfer protein 1, PR14 family), were examined at 5 dpi in the peach shoots inoculated with the <italic>&#x0394;Ltap1</italic> mutant or WT. The transcripts of all tested <italic>PR</italic> genes were significantly higher in shoots inoculated with <italic>&#x0394;Ltap1</italic> than WT (<xref rid="fig9" ref-type="fig">Figures 9A</xref>&#x2013;<xref rid="fig9" ref-type="fig">F</xref>). Notably, the transcripts of <italic>PpPR10-4</italic> and <italic>PpLTP1</italic> were 2.7- and 4.0-fold higher, respectively, in tissues inoculated with the <italic>&#x0394;Ltap1</italic> than the control (<xref rid="fig9" ref-type="fig">Figures 9D</xref>,<xref rid="fig9" ref-type="fig">F</xref>). In addition, the transcripts of plant defense-related gene <italic>PpPAL1</italic> (Phenylalanine ammonia lyase 1) were also significantly induced and were 2.0-fold higher in the <italic>&#x0394;Ltap1</italic>-inoculated shoots than those with the control (<xref rid="fig9" ref-type="fig">Figure 9G</xref>). The transcripts of <italic>PpICS1</italic> (isochorismate synthase 1) and <italic>PpNPR1</italic> (nonexpressor of pathogenesis-related gene 1), which were required for SA biosynthesis and signal transduction, were also significantly upregulated in the peach shoots inoculated with the <italic>&#x0394;Ltap1</italic> mutant than the WT (<xref rid="fig9" ref-type="fig">Figures 9H</xref>&#x2013;<xref rid="fig9" ref-type="fig">I</xref>).</p>
<fig position="float" id="fig9">
<label>Figure 9</label>
<caption><p>Impact of <italic>LtAP1</italic> deficiency on the transcripts of defense-responsive genes in infected peach shoots. RNA samples were collected from peach shoots inoculated with <italic>L. theobromae</italic> WT or <italic>&#x0394;Ltap1</italic> mutant at 5 dpi. <bold>(A&#x2013;F)</bold>: The relative expression of pathogenesis-related (<italic>PR</italic>) genes, including <italic>PpPR1a</italic>, <italic>PpPR8</italic>, <italic>PpPR10-1</italic>, <italic>PpPR10-4</italic>, <italic>PpDFN1</italic>, and <italic>PpLTP1</italic>. <bold>(G&#x2013;I)</bold>: Expression pattern of SA biosynthetic (<italic>PpPAL1</italic> and <italic>PpICS1</italic>) and signaling (<italic>PpNPR1</italic>) genes. Relative transcript levels of genes compared with that of the control using reference gene <italic>PpTEF2</italic> for normalization. Values are means &#x00B1; SD of three biological replicates. Asterisks indicate a significant difference between two genotypes for genes at <italic>p</italic>&#x003C;0.01.</p></caption>
<graphic xlink:href="fmicb-12-741842-g009.tif"/>
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</sec>
<sec id="sec21" sec-type="discussions">
<title>Discussion</title>
<p>The peach gummosis pathogen, <italic>L. theobromae</italic>, is a destructive threat to peach harvests (<xref ref-type="bibr" rid="ref39">Wang et al., 2011</xref>), and infection events at the molecular level need deeper investigation. In a previous study, <italic>L. theobromae</italic> infection caused an oxidative burst in peach shoots and promoted expression of <italic>LtAP1</italic> and other genes associated with the ROS scavenging system (<xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>). Subsequently, we attempted to uncover how plant infection is regulated by an oxidative stress regulator, YAP1, in <italic>L. theobromae</italic>.</p>
<p>Eukaryotic microorganisms have stress-protective functions against a variety of adverse conditions. We first compared the growth performance of the <italic>&#x0394;Ltap1</italic> mutant and the WT grown on media supplemented with different exogenous chemicals to mimic environmental stresses. Our results suggest that in <italic>L. theobromae</italic>, <italic>LtAP1</italic> was involved in response to various stresses. Deletion of <italic>LtAP1</italic> led to decreased sensitivity to osmotic and cell wall inhibitors, indicating that <italic>LtAP1</italic> negatively regulated the sensitivity to osmotic pressure and the maintenance of cell wall integrity in <italic>L. theobromae</italic> (<xref rid="fig2" ref-type="fig">Figure 2</xref>). Likewise, in <italic>C. gloeosporioides</italic>, <italic>&#x0394;Cgap1</italic> mutants had higher resistance to sorbitol than the WT (<xref ref-type="bibr" rid="ref17">Li et al., 2017</xref>). However, in <italic>F. graminearum</italic>, the <italic>Fgap1</italic>-deficiency mutant exhibited increased sensitivity to sorbitol or NaCl-induced stresses (<xref ref-type="bibr" rid="ref25">Montibus et al., 2013</xref>). In addition, our oxidative stress tests indicated that <italic>&#x0394;Ltap1</italic> mutants were hypersensitive to H<sub>2</sub>O<sub>2</sub>, cumene H<sub>2</sub>O<sub>2</sub>, and TBHP, as well as menadione (<xref rid="fig3" ref-type="fig">Figures 3A</xref>,<xref rid="fig3" ref-type="fig">B</xref>). These results suggest that <italic>LtAP1</italic> plays a vital role in the regulation of fungal response to oxidative stress. This is consistent with studies on <italic>M. oryzae</italic> (<xref ref-type="bibr" rid="ref11">Guo et al., 2011</xref>), <italic>F. graminearum</italic> (<xref ref-type="bibr" rid="ref25">Montibus et al., 2013</xref>), <italic>A. alternata</italic> (<xref ref-type="bibr" rid="ref18">Lin et al., 2009</xref>), and <italic>C. gloeosporioides</italic> (<xref ref-type="bibr" rid="ref31">Sun et al., 2016</xref>), where the mycelial growth of the respective mutant was severely reduced by oxidative stress compared to their respective WT. Moreover, the expression levels of <italic>LtAP1</italic> were significantly upregulated under the oxidant treatments (<xref rid="fig3" ref-type="fig">Figures 3C</xref>,<xref rid="fig3" ref-type="fig">D</xref>). A similar finding was observed in <italic>C. gloeosporioides</italic> (<xref ref-type="bibr" rid="ref31">Sun et al., 2016</xref>) and <italic>Monilinia fructicola</italic> (<xref ref-type="bibr" rid="ref41">Yu et al., 2017</xref>). The results suggest that the fungal YAP1s transcription factors are highly conserved for oxidative stress response in different species.</p>
<p>Interestingly, the <italic>&#x0394;Ltap1</italic> mutant showed a significant reduction of mycelial growth with the SNP treatment. The growth suppression of the <italic>&#x0394;Ltap1</italic> mutant after treatment with SNP plus H<sub>2</sub>O<sub>2</sub> was higher than of either SNP or H<sub>2</sub>O<sub>2</sub> alone (<xref rid="fig4" ref-type="fig">Figure 4</xref>), which showed an additive effect between SNP and H<sub>2</sub>O<sub>2</sub>. ROS can react with nitric oxide and generate toxic reactive nitrogen species (RNS), such as peroxynitrite (<xref ref-type="bibr" rid="ref22">Marroquin-Guzman et al., 2017</xref>). Hence, <italic>LtAP1</italic> is likely an essential player in oxidative and nitrosative stress adaptation.</p>
<p>Pathogenicity tests revealed that the <italic>&#x0394;Ltap1</italic> mutant induced smaller necrotic lesions, less gum release, and decreased pathogen biomass than WT (<xref rid="fig5" ref-type="fig">Figure 5</xref>), suggesting that <italic>LtAP1</italic> is essential for growth and virulence of the necrotrophic fungus <italic>L. theobromae</italic> on peach shoots. Similarly, in the biotrophic <italic>U. maydis</italic> and necrotrophic <italic>A. alternata</italic>, deletion of <italic>AP1</italic> failed to incite necrotic lesions (<xref ref-type="bibr" rid="ref24">Molina and Kahmann, 2007</xref>; <xref ref-type="bibr" rid="ref18">Lin et al., 2009</xref>). In the hemibiotrophic pathogen <italic>M. oryzae</italic>, <italic>Moap1</italic> is essential to the growth of invasive hyphae for successful infection (<xref ref-type="bibr" rid="ref11">Guo et al., 2011</xref>). In hemibiotrophic <italic>C. gloeosporioides</italic>, <italic>&#x0394;Cgap1</italic> mutant showed severely attenuated virulence on poplar leaves (<xref ref-type="bibr" rid="ref31">Sun et al., 2016</xref>) and could not induce lesions on mango fruits (<xref ref-type="bibr" rid="ref17">Li et al., 2017</xref>). However, in necrotrophic <italic>B. cinerea</italic> (<xref ref-type="bibr" rid="ref35">Temme and Tudzynski, 2009</xref>) and <italic>F. graminearum</italic> (<xref ref-type="bibr" rid="ref25">Montibus et al., 2013</xref>), the deletion of <italic>AP1</italic> did not show noticeable effects on pathogenicity, indicating that YAP1 homologs are not necessary for virulence in all pathogenic fungi studied. This might be because fungal virulence associated with YAP1 differs in the types of associations established between specific fungi and plant hosts. A better and deeper understanding of the mechanisms of pathogen virulence associated with YAP1 homologs is needed.</p>
<p>It is well known that a major mechanism of plant defense is the production of ROS against pathogens attack. Therefore, fungal pathogens need robust strategies for ROS scavenging, which involves YAP1 homologs (<xref ref-type="bibr" rid="ref29">Segal and Wilson, 2018</xref>). In the <italic>L. theobromae</italic>-infected peach shoots, the expression of <italic>LtAP1</italic>, the glutaredoxin system genes (<italic>LtGPX3</italic> and <italic>LtGLR1</italic>), and the thioredoxin system genes (<italic>LtTRX2</italic>, <italic>LtTSA1</italic>, and <italic>LtTRR1</italic>) was markedly upregulated, which was perhaps to scavenge ROS derived from the host (<xref ref-type="bibr" rid="ref43">Zhang et al., 2020</xref>). In this study, we found higher ROS accumulation at the inoculation site with the mutant than with the WT (<xref rid="fig6" ref-type="fig">Figures 6A</xref>,<xref rid="fig6" ref-type="fig">B</xref>). Moreover, the <italic>&#x0394;Ltap1</italic> mutants were hypersensitive to exogenous oxidative stress (<xref rid="fig3" ref-type="fig">Figures 3A</xref>,<xref rid="fig3" ref-type="fig">B</xref>). This suggested that LtAP1-modulating oxidative stress tolerance might play a crucial role in fungal pathogenicity. To further investigate the link between LtAP1 modulation of oxidative stress tolerance and fungal pathogenicity, we used an NADPH oxidase inhibitor, DPI, to prevent ROS generation. The results clearly showed that the DPI treatment increased necrotic lesion size and enhanced gum release in the shoots inoculated with the <italic>&#x0394;Ltap1</italic> mutants as compared to the mock control, suggesting that the pathogenicity of <italic>&#x0394;Ltap1</italic> mutants was partially restored (<xref rid="fig7" ref-type="fig">Figures 7A</xref>,<xref rid="fig7" ref-type="fig">B</xref>). Overall, LtAP1 modulation of oxidative stress tolerance, at least in part, contributed to the pathogenicity of <italic>L. theobromae</italic>. Similarly, the <italic>&#x0394;AaAP1</italic> mutant of necrotrophic <italic>A. alternata</italic> was hypersensitive to oxidants, and its pathogenicity was rescued by the NADPH oxidase inhibitor treatment (<xref ref-type="bibr" rid="ref18">Lin et al., 2009</xref>). In biotrophic <italic>U. maydis</italic>, H<sub>2</sub>O<sub>2</sub> was markedly accumulated at sites inoculated with the <italic>Umap1</italic> mutant, and inhibition of the plant NADPH oxidase decreased ROS accumulation and restored the virulence of the mutant, suggesting that <italic>Umap1</italic> acts in neutralizing the ROS generated by the maize NADPH oxidase (<xref ref-type="bibr" rid="ref24">Molina and Kahmann, 2007</xref>).</p>
<p>In filamentous fungi, YAP1 homologs are major regulators of the antioxidant response, but YAP1 homologs involve a wide array of processes by regulating genes involved in ROS scavenging (<xref ref-type="bibr" rid="ref23">Mendoza-Mart&#x00ED;nez et al., 2020</xref>). The expression of such genes, such as the core glutaredoxin system genes (<italic>LtGPX3</italic> and <italic>LtGLR1</italic>) and thioredoxin system members (<italic>LtTRX2</italic>, <italic>LtTSA1</italic>, and <italic>LtTRR1</italic>), was dramatically downregulated in the <italic>&#x0394;Ltap1</italic> mutant treated with water or H<sub>2</sub>O<sub>2</sub> (<xref rid="fig8" ref-type="fig">Figures 8A</xref>,<xref rid="fig8" ref-type="fig">B</xref>), indicating that <italic>LtAP1</italic> acts as a major regulator in the antioxidant system. Similarly, the transcription factor <italic>AaAP1</italic> could activate glutaredoxin (<italic>AaGPX3</italic> and <italic>AaGLR1</italic>) and thioredoxin systems (<italic>AaTSA1</italic> and <italic>AaTRR1</italic>) to cope with oxidative stress (<xref ref-type="bibr" rid="ref40">Yang et al., 2016</xref>; <xref ref-type="bibr" rid="ref21">Ma et al., 2018</xref>). The thioredoxin <italic>MoTrx2</italic> was found to be a target of the transcription factor MoAP1 in <italic>M. oryzae</italic>, and <italic>&#x0394;Motrx2</italic> mutant displayed higher ROS levels and lower POD and laccase activities (<xref ref-type="bibr" rid="ref38">Wang et al., 2017</xref>). However, in <italic>F. graminearum</italic>, the expression of three CAT- and two Cu/ZnSOD-encoding genes was downregulated in the <italic>Fgap1</italic> mutant (<xref ref-type="bibr" rid="ref25">Montibus et al., 2013</xref>). Likewise, EfAP1 in <italic>Epichloe festucae</italic> was required for expression levels of the <italic>CAT</italic> gene (<xref ref-type="bibr" rid="ref6">Cartwright and Scott, 2013</xref>). As a whole, it suggests that YAP1 homologs could regulate/target different antioxidant system-related genes to overcome oxidative stress in different fungi.</p>
<p>During infection, the transcript levels of genes in glutaredoxin and thioredoxin systems were significantly downregulated in the <italic>&#x0394;Ltap1</italic> mutant (<xref rid="fig8" ref-type="fig">Figure 8C</xref>). Concomitantly, the contents of <inline-formula><mml:math id="M6"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">O</mml:mi><mml:mn>2</mml:mn><mml:mo>&#x2212;</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and H<sub>2</sub>O<sub>2</sub> and transcripts of <italic>PpRBOHs</italic> were markedly higher in shoots inoculated with the <italic>&#x0394;Ltap1</italic> mutant, demonstrating a reduced ability of the <italic>&#x0394;Ltap1</italic> mutant to scavenge overproduced ROS during the interaction (<xref rid="fig6" ref-type="fig">Figure 6</xref>). It is speculated that LtAP1 is likely to modulate glutaredoxin and thioredoxin systems to scavenge host-derived ROS. Similarly, <italic>AaAP1</italic> could also modulate glutaredoxin and thioredoxin systems to cope with oxidative stress (<xref ref-type="bibr" rid="ref18">Lin et al., 2009</xref>; <xref ref-type="bibr" rid="ref40">Yang et al., 2016</xref>; <xref ref-type="bibr" rid="ref21">Ma et al., 2018</xref>).</p>
<p>ROS serving as the primary signaling molecule during pathogens attack can activate an array of defense responses, such as induction of defense-related genes (<xref ref-type="bibr" rid="ref26">Qi et al., 2017</xref>; <xref ref-type="bibr" rid="ref29">Segal and Wilson, 2018</xref>). We observed significantly higher expression levels of <italic>PR</italic> genes, such as <italic>PpPR1a</italic>, <italic>PpPR8</italic>, <italic>PpPR10-1</italic>, <italic>PpPR10-4</italic>, <italic>PpDFN1</italic>, and <italic>PpLTP1</italic>, in the <italic>&#x0394;Ltap1</italic> mutant-infected shoots in comparison with the WT treated (<xref rid="fig9" ref-type="fig">Figures 9A</xref>&#x2013;<xref rid="fig9" ref-type="fig">F</xref>). Furthermore, the transcripts of SA biosynthesis and signaling-related genes (<italic>PpPAL1</italic>, <italic>PpICS1</italic>, and <italic>PpNPR1</italic>) were also significantly upregulated after <italic>&#x0394;Ltap1</italic> mutant inoculation than the WT (<xref rid="fig9" ref-type="fig">Figures 9G</xref>&#x2013;<xref rid="fig9" ref-type="fig">I</xref>). The accumulation of PR proteins and SA-mediated plant defense response might assist in limiting disease development, which was reflected by the reduced lesion size, gum release, and fungal biomass at inoculation sites with the <italic>&#x0394;Ltap1</italic> mutant (<xref rid="fig5" ref-type="fig">Figure 5</xref>). Similarly, the thioredoxin <italic>MoTrx2</italic> regulated by MoAP1 played an essential role in the ROS scavenging during host invasion and in the suppression of the rice defense response, in which the transcript levels of plant defense genes were markedly higher in rice cells infected with the <italic>&#x0394;Motrx2</italic> mutant than the control (<xref ref-type="bibr" rid="ref38">Wang et al., 2017</xref>). The rice cells inoculated with the <italic>&#x0394;Modes1</italic> mutant exhibited strong defense responses accompanied by the accumulation of ROS and <italic>PR</italic> genes transcript in neighboring tissues, indicating that <italic>DES1</italic> is required to suppress the host basal defenses (<xref ref-type="bibr" rid="ref11">Guo et al., 2011</xref>). Taken together, we propose that the restricted expansion of the <italic>&#x0394;Ltap1</italic> mutant in peach shoots is partly caused by the defect in active suppression of peach defense response.</p>
<p>In summary, we cloned and characterized the <italic>LtAP1</italic> gene, which encodes a homolog of yeast YAP1. Our experiments demonstrated that LtAP1 was valuable for mycelial growth, stress response, and pathogenicity. We found that LtAP1 was a key regulator of oxidative stress response, acting in activating fungal glutaredoxin and thioredoxin systems, and suppressing plant defense responses during infection. The prevention of ROS production could partially restore pathogenicity of <italic>&#x0394;Ltap1</italic> mutant. <italic>LtAP1</italic> plays a central role in adjusting ROS homeostasis between fungal pathogen and plant host and is necessary for full virulence of <italic>L. theobromae</italic>. This study advances our understanding of the link between oxidative stress response, ROS detoxification, and virulence in <italic>L. theobromae</italic>. Given the critical roles of LtAP1 in <italic>L. theobromae</italic>-induced peach gummosis, it would be urgent to identify its potential targets in the downstream network, which would be helpful for future disease management.</p>
</sec>
<sec id="sec22" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found at: <ext-link xlink:href="https://www.ncbi.nlm.nih.gov/genbank/" ext-link-type="uri">https://www.ncbi.nlm.nih.gov/genbank/</ext-link>, MN933613.1.</p>
</sec>
<sec id="sec23">
<title>Author Contributions</title>
<p>HZ, DZ, GL, and JL designed the experiments. HZ performed all the experiments with occasional help from WS, DZ, and XS. HZ, WS, and DZ analyzed the data. FW provided the analytical tools. HZ, JL, and TH wrote the manuscript. All authors read and approved the final manuscript.</p>
</sec>
<sec id="sec41" sec-type="funding-information">
<title>Funding</title>
<p>This work was financially supported by the China&#x2019;s National Key Research and Development Program (grant no. 2018YFD1000300) to JL, the Natural Science Foundation of China (grant no. 31471840) and the China Agriculture Research System of MOF and MARA (grant no. CARS-30) to GL, and the Central Public-interest Scientific Institution Basal Research Fund for Chinese Academy of Tropical Agricultural Sciences (grant nos. 1630092021006 and 16300920210010) to HZ.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec001" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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</body>
<back>
<ack>
<p>We thank Professor Chaoxi Luo of Huazhong Agricultural University for kindly providing the CRISPR-Cas9-related vectors.</p>
</ack>
<sec id="sec25" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2021.741842/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2021.741842/full#supplementary-material</ext-link></p>
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<ref-list>
<title>References</title>
<ref id="ref1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ali</surname> <given-names>S. S.</given-names></name> <name><surname>Asman</surname> <given-names>A.</given-names></name> <name><surname>Shao</surname> <given-names>J.</given-names></name> <name><surname>Balidion</surname> <given-names>J. F.</given-names></name> <name><surname>Strem</surname> <given-names>M. D.</given-names></name> <name><surname>Puig</surname> <given-names>A. S.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title>Genome and transcriptome analysis of the latent pathogen <italic>Lasiodiplodia theobromae</italic>, an emerging threat to the cacao industry</article-title>. <source>Genome</source> <volume>63</volume>, <fpage>37</fpage>&#x2013;<lpage>52</lpage>. doi: <pub-id pub-id-type="doi">10.1139/gen-2019-0112</pub-id>, PMID: <pub-id pub-id-type="pmid">31580730</pub-id></citation></ref>
<ref id="ref2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Alves</surname> <given-names>A.</given-names></name> <name><surname>Crous</surname> <given-names>P. W.</given-names></name> <name><surname>Correia</surname> <given-names>A.</given-names></name> <name><surname>Phillips</surname> <given-names>A. J. L.</given-names></name></person-group> (<year>2008</year>). <article-title>Morphological and molecular data reveal cryptic speciation in <italic>Lasiodiplodia theobromae</italic></article-title>. <source>Fungal Divers.</source> <volume>28</volume>, <fpage>1</fpage>&#x2013;<lpage>13</lpage>. doi: <pub-id pub-id-type="doi">10.1002/yea.1554</pub-id></citation></ref>
<ref id="ref3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baxter</surname> <given-names>A.</given-names></name> <name><surname>Mittler</surname> <given-names>R.</given-names></name> <name><surname>Suzuki</surname> <given-names>N.</given-names></name></person-group> (<year>2014</year>). <article-title>ROS as key players in plant stress signalling</article-title>. <source>J. Exp. Bot.</source> <volume>65</volume>, <fpage>1229</fpage>&#x2013;<lpage>1240</lpage>. doi: <pub-id pub-id-type="doi">10.1093/jxb/ert375</pub-id>, PMID: <pub-id pub-id-type="pmid">24253197</pub-id></citation></ref>
<ref id="ref4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Beckman</surname> <given-names>T. G.</given-names></name> <name><surname>Pusey</surname> <given-names>P. L.</given-names></name> <name><surname>Bertrand</surname> <given-names>P. F.</given-names></name></person-group> (<year>2003</year>). <article-title>Impact of fungal gummosis on peach trees</article-title>. <source>HortScience</source> <volume>38</volume>, <fpage>1141</fpage>&#x2013;<lpage>1143</lpage>. doi: <pub-id pub-id-type="doi">10.21273/HORTSCI.38.6.1141</pub-id></citation></ref>
<ref id="ref5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Camejo</surname> <given-names>D.</given-names></name> <name><surname>Guzm&#x00E1;n-Cede&#x00F1;o</surname> <given-names>&#x00C1;.</given-names></name> <name><surname>Moreno</surname> <given-names>A.</given-names></name></person-group> (<year>2016</year>). <article-title>Reactive oxygen species, essential molecules, during plant-pathogen interactions</article-title>. <source>Plant Physiol. Biochem.</source> <volume>103</volume>, <fpage>10</fpage>&#x2013;<lpage>23</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.plaphy.2016.02.035</pub-id>, PMID: <pub-id pub-id-type="pmid">26950921</pub-id></citation></ref>
<ref id="ref6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cartwright</surname> <given-names>G. M.</given-names></name> <name><surname>Scott</surname> <given-names>B.</given-names></name></person-group> (<year>2013</year>). <article-title>Redox regulation of an AP-1-like transcription factor, YapA, in the fungal symbiont <italic>Epichloe festucae</italic></article-title>. <source>Eukaryot. Cell</source> <volume>12</volume>, <fpage>1335</fpage>&#x2013;<lpage>1348</lpage>. doi: <pub-id pub-id-type="doi">10.1128/EC.00129-13</pub-id>, PMID: <pub-id pub-id-type="pmid">23893078</pub-id></citation></ref>
<ref id="ref7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cipriano</surname> <given-names>A. K.</given-names></name> <name><surname>Gondim</surname> <given-names>D. M.</given-names></name> <name><surname>Vasconcelos</surname> <given-names>I. M.</given-names></name> <name><surname>Martins</surname> <given-names>J. A.</given-names></name> <name><surname>Moura</surname> <given-names>A. A.</given-names></name> <name><surname>Moreno</surname> <given-names>F. B.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Proteomic analysis of responsive stem proteins of resistant and susceptible cashew plants after <italic>Lasiodiplodia theobromae</italic> infection</article-title>. <source>J. Proteome</source> <volume>113</volume>, <fpage>90</fpage>&#x2013;<lpage>109</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.jprot.2014.09.022</pub-id>, PMID: <pub-id pub-id-type="pmid">25289588</pub-id></citation></ref>
<ref id="ref8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>De Gara</surname> <given-names>L.</given-names></name> <name><surname>de Pinto</surname> <given-names>M. C.</given-names></name> <name><surname>Tommasi</surname> <given-names>F.</given-names></name></person-group> (<year>2003</year>). <article-title>The antioxidant systems vis-&#x00E0;-vis reactive oxygen species during plant-pathogen interaction</article-title>. <source>Plant Physiol. Biochem.</source> <volume>41</volume>, <fpage>863</fpage>&#x2013;<lpage>870</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0981-9428(03)00135-9</pub-id></citation></ref>
<ref id="ref9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>F&#x00E9;lix</surname> <given-names>C.</given-names></name> <name><surname>Meneses</surname> <given-names>R.</given-names></name> <name><surname>Gon&#x00E7;alves</surname> <given-names>M. F. M.</given-names></name> <name><surname>Tilleman</surname> <given-names>L.</given-names></name> <name><surname>Duarte</surname> <given-names>A. S.</given-names></name> <name><surname>Jorr&#x00ED;n-Novo</surname> <given-names>J. V.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title>A multi-omics analysis of the grapevine pathogen <italic>Lasiodiplodia theobromae</italic> reveals that temperature affects the expression of virulence- and pathogenicity-related genes</article-title>. <source>Sci. Rep.</source> <volume>9</volume>:<fpage>13144</fpage>. doi: <pub-id pub-id-type="doi">10.1038/s41598-019-49551-w</pub-id>, PMID: <pub-id pub-id-type="pmid">31511626</pub-id></citation></ref>
<ref id="ref10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gao</surname> <given-names>L.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Li</surname> <given-names>Z.</given-names></name> <name><surname>Zhang</surname> <given-names>H.</given-names></name> <name><surname>Ye</surname> <given-names>J.</given-names></name> <name><surname>Li</surname> <given-names>G.</given-names></name></person-group> (<year>2016</year>). <article-title>Gene expression changes during the gummosis development of peach shoots in response to <italic>Lasiodiplodia theobromae</italic> infection using RNA-Seq</article-title>. <source>Front. Physiol.</source> <volume>7</volume>:<fpage>170</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fphys.2016.00170</pub-id>, PMID: <pub-id pub-id-type="pmid">27242544</pub-id></citation></ref>
<ref id="ref11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Guo</surname> <given-names>M.</given-names></name> <name><surname>Chen</surname> <given-names>Y.</given-names></name> <name><surname>Du</surname> <given-names>Y.</given-names></name> <name><surname>Dong</surname> <given-names>Y.</given-names></name> <name><surname>Guo</surname> <given-names>W.</given-names></name> <name><surname>Zhai</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>The bZIP transcription factor MoAP1 mediates the oxidative stress response and is critical for pathogenicity of the rice blast fungus <italic>Magnaporthe oryzae</italic></article-title>. <source>PLoS Pathog.</source> <volume>7</volume>:<fpage>e1001302</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.ppat.1001302</pub-id>, PMID: <pub-id pub-id-type="pmid">21383978</pub-id></citation></ref>
<ref id="ref12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kawasaki</surname> <given-names>L.</given-names></name> <name><surname>Wysong</surname> <given-names>D.</given-names></name> <name><surname>Diamond</surname> <given-names>R.</given-names></name> <name><surname>Aguirre</surname> <given-names>J.</given-names></name></person-group> (<year>1997</year>). <article-title>Two divergent catalase genes are differentially regulated during <italic>Aspergillus nidulans</italic> development and oxidative stress</article-title>. <source>J. Bacteriol.</source> <volume>179</volume>, <fpage>3284</fpage>&#x2013;<lpage>3292</lpage>. doi: <pub-id pub-id-type="doi">10.1128/jb.179.10.3284-3292.1997</pub-id>, PMID: <pub-id pub-id-type="pmid">9150225</pub-id></citation></ref>
<ref id="ref13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kuge</surname> <given-names>S.</given-names></name> <name><surname>Jones</surname> <given-names>N.</given-names></name></person-group> (<year>1994</year>). <article-title>YAP1 dependent activation of TRX2 is essential for the response of <italic>Saccharomyces cerevisiae</italic> to oxidative stress by hydroperoxides</article-title>. <source>EMBO J.</source> <volume>13</volume>, <fpage>655</fpage>&#x2013;<lpage>664</lpage>. doi: <pub-id pub-id-type="doi">10.1002/j.1460-2075.1994.tb06304.x</pub-id></citation></ref>
<ref id="ref14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lanfranco</surname> <given-names>L.</given-names></name> <name><surname>Novero</surname> <given-names>M.</given-names></name> <name><surname>Bonfante</surname> <given-names>P.</given-names></name></person-group> (<year>2005</year>). <article-title>The mycorrhizal fungus <italic>Gigaspora margarita</italic> possesses a CuZn superoxide dismutase that is up-regulated during symbiosis with legume hosts</article-title>. <source>Plant Physiol.</source> <volume>137</volume>, <fpage>1319</fpage>&#x2013;<lpage>1330</lpage>. doi: <pub-id pub-id-type="doi">10.1104/pp.104.050435</pub-id>, PMID: <pub-id pub-id-type="pmid">15749992</pub-id></citation></ref>
<ref id="ref15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lessing</surname> <given-names>F.</given-names></name> <name><surname>Kniemeyer</surname> <given-names>O.</given-names></name> <name><surname>Wozniok</surname> <given-names>I.</given-names></name> <name><surname>Loeffler</surname> <given-names>J.</given-names></name> <name><surname>Kurzai</surname> <given-names>O.</given-names></name> <name><surname>Haertl</surname> <given-names>A.</given-names></name> <etal/></person-group>. (<year>2007</year>). <article-title>The <italic>Aspergillus fumigatus</italic> transcriptional regulator AfYap1 represents the major regulator for defense against reactive oxygen intermediates but is dispensable for pathogenicity in an intranasal mouse infection model</article-title>. <source>Eukaryot. Cell</source> <volume>6</volume>, <fpage>2290</fpage>&#x2013;<lpage>2302</lpage>. doi: <pub-id pub-id-type="doi">10.1128/EC.00267-07</pub-id>, PMID: <pub-id pub-id-type="pmid">17921349</pub-id></citation></ref>
<ref id="ref16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lev</surname> <given-names>S.</given-names></name> <name><surname>Hadar</surname> <given-names>R.</given-names></name> <name><surname>Amedeo</surname> <given-names>P.</given-names></name> <name><surname>Baker</surname> <given-names>S. E.</given-names></name> <name><surname>Yoder</surname> <given-names>O.</given-names></name> <name><surname>Horwitz</surname> <given-names>B. A.</given-names></name></person-group> (<year>2005</year>). <article-title>Activation of an AP1-like transcription factor of the maize pathogen <italic>Cochliobolus heterostrophus</italic> in response to oxidative stress and plant signals</article-title>. <source>Eukaryot. Cell</source> <volume>4</volume>, <fpage>443</fpage>&#x2013;<lpage>454</lpage>. doi: <pub-id pub-id-type="doi">10.1128/EC.4.2.443-454.2005</pub-id>, PMID: <pub-id pub-id-type="pmid">15701806</pub-id></citation></ref>
<ref id="ref17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>X.</given-names></name> <name><surname>Wu</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>Z.</given-names></name> <name><surname>Zhang</surname> <given-names>C.</given-names></name></person-group> (<year>2017</year>). <article-title>The function and transcriptome analysis of a bZIP transcription factor CgAP1 in <italic>Colletotrichum gloeosporioides</italic></article-title>. <source>Microbiol. Res.</source> <volume>197</volume>, <fpage>39</fpage>&#x2013;<lpage>48</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.micres.2017.01.006</pub-id>, PMID: <pub-id pub-id-type="pmid">28219524</pub-id></citation></ref>
<ref id="ref18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lin</surname> <given-names>C. H.</given-names></name> <name><surname>Yang</surname> <given-names>S. L.</given-names></name> <name><surname>Chung</surname> <given-names>K. R.</given-names></name></person-group> (<year>2009</year>). <article-title>The YAP1 homolog&#x2013;mediated oxidative stress tolerance is crucial for pathogenicity of the necrotrophic fungus <italic>Alternaria alternata</italic> in citrus</article-title>. <source>Mol. Plant-Microbe Interact.</source> <volume>22</volume>, <fpage>942</fpage>&#x2013;<lpage>952</lpage>. doi: <pub-id pub-id-type="doi">10.1094/MPMI-22-8-0942</pub-id>, PMID: <pub-id pub-id-type="pmid">19589070</pub-id></citation></ref>
<ref id="ref19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lin</surname> <given-names>H. C.</given-names></name> <name><surname>Yu</surname> <given-names>P. L.</given-names></name> <name><surname>Chen</surname> <given-names>L. H.</given-names></name> <name><surname>Tsai</surname> <given-names>H. C.</given-names></name> <name><surname>Chung</surname> <given-names>K. R.</given-names></name></person-group> (<year>2018</year>). <article-title>A major facilitator superfamily transporter regulated by the stress-responsive transcription factor Yap1 is required for resistance to fungicides, xenobiotics, and oxidants and full virulence in <italic>Alternaria alternata</italic></article-title>. <source>Front. Microbiol.</source> <volume>9</volume>:<fpage>2229</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2018.02229</pub-id>, PMID: <pub-id pub-id-type="pmid">30279684</pub-id></citation></ref>
<ref id="ref20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Livak</surname> <given-names>K. J.</given-names></name> <name><surname>Schmittgen</surname> <given-names>T. D.</given-names></name></person-group> (<year>2001</year>). <article-title>Analysis of relative gene expression data using real-time quantitative PCR and the 2<sup>&#x2212;&#x0394;&#x0394;CT</sup> method</article-title>. <source>Methods</source> <volume>25</volume>, <fpage>402</fpage>&#x2013;<lpage>408</lpage>. doi: <pub-id pub-id-type="doi">10.1006/meth.2001.1262</pub-id>, PMID: <pub-id pub-id-type="pmid">11846609</pub-id></citation></ref>
<ref id="ref21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ma</surname> <given-names>H.</given-names></name> <name><surname>Wang</surname> <given-names>M.</given-names></name> <name><surname>Gai</surname> <given-names>Y.</given-names></name> <name><surname>Fu</surname> <given-names>H.</given-names></name> <name><surname>Zhang</surname> <given-names>B.</given-names></name> <name><surname>Ruan</surname> <given-names>R.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Thioredoxin and glutaredoxin systems required for oxidative stress resistance, fungicide sensitivity, and virulence of <italic>Alternaria alternata</italic></article-title>. <source>Appl. Environ. Microbiol.</source> <volume>84</volume>:<fpage>e00086</fpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.00086-18</pub-id>, PMID: <pub-id pub-id-type="pmid">29752269</pub-id></citation></ref>
<ref id="ref22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Marroquin-Guzman</surname> <given-names>M.</given-names></name> <name><surname>Hartline</surname> <given-names>D.</given-names></name> <name><surname>Wright</surname> <given-names>J. D.</given-names></name> <name><surname>Elowsky</surname> <given-names>C.</given-names></name> <name><surname>Bourret</surname> <given-names>T. J.</given-names></name> <name><surname>Wilson</surname> <given-names>R. A.</given-names></name></person-group> (<year>2017</year>). <article-title>The <italic>Magnaporthe oryzae</italic> nitrooxidative stress response suppresses rice innate immunity during blast disease</article-title>. <source>Nat. Microbiol.</source> <volume>2</volume>:<fpage>17054</fpage>. doi: <pub-id pub-id-type="doi">10.1038/nmicrobiol.2017.54</pub-id>, PMID: <pub-id pub-id-type="pmid">28418377</pub-id></citation></ref>
<ref id="ref23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mendoza-Mart&#x00ED;nez</surname> <given-names>A. E.</given-names></name> <name><surname>Cano-Dom&#x00ED;nguez</surname> <given-names>N.</given-names></name> <name><surname>Aguirre</surname> <given-names>J.</given-names></name></person-group> (<year>2020</year>). <article-title>Yap1 homologs mediate more than the redox regulation of the antioxidant response in filamentous fungi</article-title>. <source>Fungal Biol.</source> <volume>124</volume>, <fpage>253</fpage>&#x2013;<lpage>262</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.funbio.2019.04.001</pub-id>, PMID: <pub-id pub-id-type="pmid">32389287</pub-id></citation></ref>
<ref id="ref24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Molina</surname> <given-names>L.</given-names></name> <name><surname>Kahmann</surname> <given-names>R.</given-names></name></person-group> (<year>2007</year>). <article-title>An <italic>Ustilago maydis</italic> gene involved in H<sub>2</sub>O<sub>2</sub> detoxification is required for virulence</article-title>. <source>Plant Cell</source> <volume>19</volume>, <fpage>2293</fpage>&#x2013;<lpage>2309</lpage>. doi: <pub-id pub-id-type="doi">10.1105/tpc.107.052332</pub-id>, PMID: <pub-id pub-id-type="pmid">17616735</pub-id></citation></ref>
<ref id="ref25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Montibus</surname> <given-names>M.</given-names></name> <name><surname>Ducos</surname> <given-names>C.</given-names></name> <name><surname>Bonnin-Verdal</surname> <given-names>M.-N.</given-names></name> <name><surname>Bormann</surname> <given-names>J.</given-names></name> <name><surname>Ponts</surname> <given-names>N.</given-names></name> <name><surname>Richard-Forget</surname> <given-names>F.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>The bZIP transcription factor Fgap1 mediates oxidative stress response and trichothecene biosynthesis but not virulence in <italic>Fusarium graminearum</italic></article-title>. <source>PLoS One</source> <volume>8</volume>:<fpage>e83377</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0083377</pub-id>, PMID: <pub-id pub-id-type="pmid">24349499</pub-id></citation></ref>
<ref id="ref26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Qi</surname> <given-names>J.</given-names></name> <name><surname>Wang</surname> <given-names>J.</given-names></name> <name><surname>Gong</surname> <given-names>Z.</given-names></name> <name><surname>Zhou</surname> <given-names>J.-M.</given-names></name></person-group> (<year>2017</year>). <article-title>Apoplastic ROS signaling in plant immunity</article-title>. <source>Curr. Opin. Plant Biol.</source> <volume>38</volume>, <fpage>92</fpage>&#x2013;<lpage>100</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pbi.2017.04.022</pub-id>, PMID: <pub-id pub-id-type="pmid">28511115</pub-id></citation></ref>
<ref id="ref27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Reverberi</surname> <given-names>M.</given-names></name> <name><surname>Zjalic</surname> <given-names>S.</given-names></name> <name><surname>Ricelli</surname> <given-names>A.</given-names></name> <name><surname>Punelli</surname> <given-names>F.</given-names></name> <name><surname>Camera</surname> <given-names>E.</given-names></name> <name><surname>Fabbri</surname> <given-names>C.</given-names></name> <etal/></person-group>. (<year>2008</year>). <article-title>Modulation of antioxidant defense in <italic>Aspergillus parasiticus</italic> is involved in aflatoxin biosynthesis: a role for the ApyapA gene</article-title>. <source>Eukaryot. Cell</source> <volume>7</volume>, <fpage>988</fpage>&#x2013;<lpage>1000</lpage>. doi: <pub-id pub-id-type="doi">10.1128/EC.00228-07</pub-id>, PMID: <pub-id pub-id-type="pmid">18441122</pub-id></citation></ref>
<ref id="ref28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Scheler</surname> <given-names>C.</given-names></name> <name><surname>Durner</surname> <given-names>J.</given-names></name> <name><surname>Astier</surname> <given-names>J.</given-names></name></person-group> (<year>2013</year>). <article-title>Nitric oxide and reactive oxygen species in plant biotic interactions</article-title>. <source>Curr. Opin. Plant Biol.</source> <volume>16</volume>, <fpage>534</fpage>&#x2013;<lpage>539</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pbi.2013.06.020</pub-id>, PMID: <pub-id pub-id-type="pmid">23880111</pub-id></citation></ref>
<ref id="ref29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Segal</surname> <given-names>L. M.</given-names></name> <name><surname>Wilson</surname> <given-names>R. A.</given-names></name></person-group> (<year>2018</year>). <article-title>Reactive oxygen species metabolism and plant-fungal interactions</article-title>. <source>Fungal Genet. Biol.</source> <volume>110</volume>, <fpage>1</fpage>&#x2013;<lpage>9</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.fgb.2017.12.003</pub-id>, PMID: <pub-id pub-id-type="pmid">29225185</pub-id></citation></ref>
<ref id="ref30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Slippers</surname> <given-names>B.</given-names></name> <name><surname>Wingfield</surname> <given-names>M. J.</given-names></name></person-group> (<year>2007</year>). <article-title>Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact</article-title>. <source>Fungal Biol. Rev.</source> <volume>21</volume>, <fpage>90</fpage>&#x2013;<lpage>106</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.fbr.2007.06.002</pub-id></citation></ref>
<ref id="ref31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname> <given-names>Y.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Tian</surname> <given-names>C.</given-names></name></person-group> (<year>2016</year>). <article-title>bZIP transcription factor CgAP1 is essential for oxidative stress tolerance and full virulence of the poplar anthracnose fungus <italic>Colletotrichum gloeosporioides</italic></article-title>. <source>Fungal Genet. Biol.</source> <volume>95</volume>, <fpage>58</fpage>&#x2013;<lpage>66</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.fgb.2016.08.006</pub-id>, PMID: <pub-id pub-id-type="pmid">27544415</pub-id></citation></ref>
<ref id="ref32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Suzuki</surname> <given-names>N.</given-names></name> <name><surname>Miller</surname> <given-names>G.</given-names></name> <name><surname>Morales</surname> <given-names>J.</given-names></name> <name><surname>Shulaev</surname> <given-names>V.</given-names></name> <name><surname>Torres</surname> <given-names>M. A.</given-names></name> <name><surname>Mittler</surname> <given-names>R.</given-names></name></person-group> (<year>2011</year>). <article-title>Respiratory burst oxidases: the engines of ROS signaling</article-title>. <source>Curr. Opin. Plant Biol.</source> <volume>14</volume>, <fpage>691</fpage>&#x2013;<lpage>699</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pbi.2011.07.014</pub-id>, PMID: <pub-id pub-id-type="pmid">21862390</pub-id></citation></ref>
<ref id="ref33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Svetaz</surname> <given-names>L. A.</given-names></name> <name><surname>Bustamante</surname> <given-names>C. A.</given-names></name> <name><surname>Goldy</surname> <given-names>C.</given-names></name> <name><surname>Rivero</surname> <given-names>N.</given-names></name> <name><surname>M&#x00FC;ller</surname> <given-names>G. L.</given-names></name> <name><surname>Valentini</surname> <given-names>G. H.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Unravelling early events in the <italic>Taphrina deformans</italic>&#x2013;<italic>Prunus persica</italic> interaction: an insight into the differential responses in resistant and susceptible genotypes</article-title>. <source>Plant Cell Environ.</source> <volume>40</volume>, <fpage>1456</fpage>&#x2013;<lpage>1473</lpage>. doi: <pub-id pub-id-type="doi">10.1111/pce.12942</pub-id>, PMID: <pub-id pub-id-type="pmid">28244594</pub-id></citation></ref>
<ref id="ref34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tamura</surname> <given-names>K.</given-names></name> <name><surname>Stecher</surname> <given-names>G.</given-names></name> <name><surname>Peterson</surname> <given-names>D. S.</given-names></name> <name><surname>Filipski</surname> <given-names>A.</given-names></name> <name><surname>Kumar</surname> <given-names>S.</given-names></name></person-group> (<year>2013</year>). <article-title>MEGA6: Molecular Evolutionary Genetics Analysis version 6.0</article-title>. <source>Mol. Biol. Evol.</source> <volume>30</volume>, <fpage>2725</fpage>&#x2013;<lpage>2729</lpage>. doi: <pub-id pub-id-type="doi">10.1093/molbev/mst197</pub-id>, PMID: <pub-id pub-id-type="pmid">24132122</pub-id></citation></ref>
<ref id="ref35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Temme</surname> <given-names>N.</given-names></name> <name><surname>Tudzynski</surname> <given-names>P.</given-names></name></person-group> (<year>2009</year>). <article-title>Does <italic>Botrytis cinerea</italic> ignore H<sub>2</sub>O<sub>2</sub>-induced oxidative stress during infection? Characterization of <italic>Botrytis</italic> activator protein 1</article-title>. <source>Mol. Plant-Microbe Interact.</source> <volume>22</volume>, <fpage>987</fpage>&#x2013;<lpage>998</lpage>. doi: <pub-id pub-id-type="doi">10.1094/MPMI-22-8-0987</pub-id>, PMID: <pub-id pub-id-type="pmid">19589074</pub-id></citation></ref>
<ref id="ref36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Thompson</surname> <given-names>J. D.</given-names></name> <name><surname>Gibson</surname> <given-names>T. J.</given-names></name> <name><surname>Plewniak</surname> <given-names>F.</given-names></name> <name><surname>Jeanmougin</surname> <given-names>F.</given-names></name> <name><surname>Higgins</surname> <given-names>D. G.</given-names></name></person-group> (<year>1997</year>). <article-title>The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools</article-title>. <source>Nucleic Acids Res.</source> <volume>25</volume>, <fpage>4876</fpage>&#x2013;<lpage>4882</lpage>. doi: <pub-id pub-id-type="doi">10.1093/nar/25.24.4876</pub-id>, PMID: <pub-id pub-id-type="pmid">9396791</pub-id></citation></ref>
<ref id="ref37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Torres</surname> <given-names>M. A.</given-names></name> <name><surname>Dangl</surname> <given-names>J. L.</given-names></name></person-group> (<year>2005</year>). <article-title>Functions of the respiratory burst oxidase in biotic interactions, abiotic stress and development</article-title>. <source>Curr. Opin. Plant Biol.</source> <volume>8</volume>, <fpage>397</fpage>&#x2013;<lpage>403</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.pbi.2005.05.014</pub-id>, PMID: <pub-id pub-id-type="pmid">15939662</pub-id></citation></ref>
<ref id="ref38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>J.</given-names></name> <name><surname>Yin</surname> <given-names>Z.</given-names></name> <name><surname>Tang</surname> <given-names>W.</given-names></name> <name><surname>Cai</surname> <given-names>X.</given-names></name> <name><surname>Gao</surname> <given-names>C.</given-names></name> <name><surname>Zhang</surname> <given-names>H.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>The thioredoxin MoTrx2 protein mediates reactive oxygen species (ROS) balance and controls pathogenicity as a target of the transcription factor MoAP1 in <italic>Magnaporthe oryzae</italic></article-title>. <source>Mol. Plant Pathol.</source> <volume>18</volume>, <fpage>1199</fpage>&#x2013;<lpage>1209</lpage>. doi: <pub-id pub-id-type="doi">10.1111/mpp.12484</pub-id>, PMID: <pub-id pub-id-type="pmid">27560036</pub-id></citation></ref>
<ref id="ref39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>F.</given-names></name> <name><surname>Zhao</surname> <given-names>L.</given-names></name> <name><surname>Li</surname> <given-names>G.</given-names></name> <name><surname>Huang</surname> <given-names>J.</given-names></name> <name><surname>Hsiang</surname> <given-names>T.</given-names></name></person-group> (<year>2011</year>). <article-title>Identification and characterization of <italic>Botryosphaeria</italic> spp. causing gummosis of peach trees in Hubei Province, Central China</article-title>. <source>Plant Dis.</source> <volume>95</volume>, <fpage>1378</fpage>&#x2013;<lpage>1384</lpage>. doi: <pub-id pub-id-type="doi">10.1094/PDIS-12-10-0893</pub-id>, PMID: <pub-id pub-id-type="pmid">30731783</pub-id></citation></ref>
<ref id="ref40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yang</surname> <given-names>S. L.</given-names></name> <name><surname>Yu</surname> <given-names>P. L.</given-names></name> <name><surname>Chung</surname> <given-names>K. R.</given-names></name></person-group> (<year>2016</year>). <article-title>The glutathione peroxidase-mediated reactive oxygen species resistance, fungicide sensitivity and cell wall construction in the citrus fungal pathogen <italic>Alternaria alternata</italic></article-title>. <source>Environ. Microbiol.</source> <volume>18</volume>, <fpage>923</fpage>&#x2013;<lpage>935</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1462-2920.13125</pub-id>, PMID: <pub-id pub-id-type="pmid">26567914</pub-id></citation></ref>
<ref id="ref41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname> <given-names>P.-L.</given-names></name> <name><surname>Wang</surname> <given-names>C.-L.</given-names></name> <name><surname>Chen</surname> <given-names>P.-Y.</given-names></name> <name><surname>Lee</surname> <given-names>M.-H.</given-names></name></person-group> (<year>2017</year>). <article-title>YAP1 homologue-mediated redox sensing is crucial for a successful infection by <italic>Monilinia fructicola</italic></article-title>. <source>Mol. Plant Pathol.</source> <volume>18</volume>, <fpage>783</fpage>&#x2013;<lpage>797</lpage>. doi: <pub-id pub-id-type="doi">10.1111/mpp.12438</pub-id>, PMID: <pub-id pub-id-type="pmid">27239957</pub-id></citation></ref>
<ref id="ref42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>J.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Du</surname> <given-names>J.</given-names></name> <name><surname>Huang</surname> <given-names>Z.</given-names></name> <name><surname>Fang</surname> <given-names>A.</given-names></name> <name><surname>Yang</surname> <given-names>Y.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title><italic>Sclerotinia sclerotiorum</italic> thioredoxin reductase is required for oxidative stress tolerance, virulence, and sclerotial development</article-title>. <source>Front. Microbiol.</source> <volume>10</volume>:<fpage>233</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2019.00233</pub-id>, PMID: <pub-id pub-id-type="pmid">30837967</pub-id></citation></ref>
<ref id="ref43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>H.</given-names></name> <name><surname>Zhang</surname> <given-names>D.</given-names></name> <name><surname>Wang</surname> <given-names>F.</given-names></name> <name><surname>Hsiang</surname> <given-names>T.</given-names></name> <name><surname>Liu</surname> <given-names>J.</given-names></name> <name><surname>Li</surname> <given-names>G.</given-names></name></person-group> (<year>2020</year>). <article-title><italic>Lasiodiplodia theobromae</italic>-induced alteration in ROS metabolism and its relation to gummosis development in <italic>Prunus persica</italic></article-title>. <source>Plant Physiol. Biochem.</source> <volume>154</volume>, <fpage>43</fpage>&#x2013;<lpage>53</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.plaphy.2020.05.018</pub-id>, PMID: <pub-id pub-id-type="pmid">32526610</pub-id></citation></ref>
</ref-list>
</back>
</article>