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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2021.730377</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Insignificant Response of Bacterioplankton Community to Elevated <italic>p</italic>CO<sub>2</sub> During a Short-Term Microcosm Experiment in a Subtropical Eutrophic Coastal Ecosystem</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Yunlan</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn4" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/518241/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Fei</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
<xref rid="fn4" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1192975/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Xiaowei</given-names>
</name>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/429086/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Huifang</given-names>
</name>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1477797/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Jiao</surname>
<given-names>Nianzhi</given-names>
</name>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/579965/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhang</surname>
<given-names>Rui</given-names>
</name>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<xref rid="c002" ref-type="corresp"><sup>&#x002A;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/203495/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>College of the Environment and Ecology, Xiamen University</institution>, <addr-line>Xiamen</addr-line>, <country>China</country>
</aff>
<aff id="aff2"><sup>2</sup><institution>State Key Laboratory of Marine Environmental Science, Fujian Key Laboratory of Marine Carbon Sequestration, Xiamen University</institution>, <addr-line>Xiamen</addr-line>, <country>China</country>
</aff>
<aff id="aff3"><sup>3</sup><institution>Laboratory of Marine Biology and Ecology, Ministry of Natural Resources, Third Institute of Oceanography</institution>, <addr-line>Xiamen</addr-line>, <country>China</country>
</aff>
<aff id="aff4"><sup>4</sup><institution>College of Ocean and Earth Sciences, Xiamen University</institution>, <addr-line>Xiamen</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn id="fn1" fn-type="edited-by"><p>Edited by: Feixue Fu, University of Southern California, United States</p></fn>
<fn id="fn2" fn-type="edited-by"><p>Reviewed by: Juntian Xu, Jiangsu Ocean University, China; Yantao Liang, Ocean University of China, China</p></fn>
<corresp id="c001">&#x002A;Correspondence: Nianzhi Jiao, <email>jiao@xmu.edu.cn</email></corresp>
<corresp id="c002">Rui Zhang, <email>ruizhang@xmu.edu.cn</email></corresp>
<fn id="fn4" fn-type="equal"><p><sup>&#x2020;</sup>These authors have contributed equally to this work and share first authorship</p></fn>
<fn id="fn3" fn-type="other"><p>This article was submitted to Aquatic Microbiology, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>11</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>730377</elocation-id>
<history>
<date date-type="received">
<day>24</day>
<month>06</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>25</day>
<month>10</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Yang, Zhang, Chen, Li, Jiao and Zhang.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Yang, Zhang, Chen, Li, Jiao and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Ocean acidification, as one of the major consequences of global climate change, markedly affects multiple ecosystem functions in disparate marine environments from coastal habitats to the deep ocean. Evaluation of the responses of marine microbial community to the increasing partial pressure of CO<sub>2</sub> (<italic>p</italic>CO<sub>2</sub>) is crucial to explore the microbe-driven biogeochemical processes in the future ocean. In this study, a microcosm incubation of eutrophic coastal water from Xiamen Bay under elevated <italic>p</italic>CO<sub>2</sub> (about 1,000 &#x03BC;atm) and control (ambient air, about 380&#x2013;410 &#x03BC;atm) conditions was conducted to investigate the effect of ocean acidification on the natural bacterioplankton community. During the 5-day incubation period, the chlorophyll <italic>a</italic> concentration and bacterioplankton abundance were not significantly affected by increased <italic>p</italic>CO<sub>2</sub>. Hierarchical clustering and non-metric multidimensional scaling analysis based on Bray-Curtis similarity among the bacterioplankton community derived from the 16S rRNA genes revealed an inconspicuous impact of elevated <italic>p</italic>CO<sub>2</sub> on the bacterial community. During the incubation period, Proteobacteria, Bacteroidetes, Actinobacteria, Cyanobacteria, and Epsilonbacteraeota were predominant in all microcosms. Despite the distinct temporal variation in the composition of the bacterioplankton community during the experimental period, statistical analyses showed that no significant difference was found on bacterioplankton taxa between elevated <italic>p</italic>CO<sub>2</sub> and control, indicating that the bacterioplankton at the population-level were also insensitive to elevated <italic>p</italic>CO<sub>2</sub>. Our results therefore suggest that the bacterioplankton communities in the fluctuating and eutrophic coastal ecosystems appear to be adaptable to the short-term elevated <italic>p</italic>CO<sub>2</sub>.</p>
</abstract>
<kwd-group>
<kwd>elevated <italic>p</italic>CO<sub>2</sub></kwd>
<kwd>bacterioplankton community</kwd>
<kwd>abundance</kwd>
<kwd>community composition</kwd>
<kwd>eutrophic coastal ecosystem</kwd>
</kwd-group>
<contract-num rid="cn1">2020YFA06083000, 2021YFE0193000</contract-num>
<contract-num rid="cn2">41861144018</contract-num>
<contract-num rid="cn3">2019 M662237</contract-num>
<contract-sponsor id="cn1">National Key Research and Development</contract-sponsor>
<contract-sponsor id="cn2">National Natural Science Foundation</contract-sponsor>
<contract-sponsor id="cn3">China Postdoctoral Science Foundation<named-content content-type="fundref-id">10.13039/501100002858</named-content>
</contract-sponsor>
<counts>
<fig-count count="6"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="72"/>
<page-count count="12"/>
<word-count count="7952"/>
</counts>
</article-meta>
</front>
<body>
<sec id="sec1" sec-type="intro">
<title>Introduction</title>
<p>Human activities have triggered substantial changes in global climate systems with a preternatural rate over the past two centuries, leading to massive CO<sub>2</sub> absorption by the world&#x2019;s oceans and a reduction in the pH of seawater which is known as ocean acidification (<xref ref-type="bibr" rid="ref17">Caldeira and Wickett, 2003</xref>; <xref ref-type="bibr" rid="ref54">Orr et al., 2005</xref>). The partial pressure of atmospheric CO<sub>2</sub> (<italic>p</italic>CO<sub>2</sub>) has increased by nearly 40% from the preindustrial period to the present day (about 400 &#x03BC;atm) and is predicted to reach approximately 1,000 &#x03BC;atm by the end of this century (<xref ref-type="bibr" rid="ref17">Caldeira and Wickett, 2003</xref>; <xref ref-type="bibr" rid="ref37">IPCC, 2013</xref>). Ocean uptake of CO<sub>2</sub> changes the equilibrium of the carbonate system, and the continued release of anthropogenic CO<sub>2</sub> may lead to another 0.3&#x2013;0.4units decline in seawater pH globally by 2100 (<xref ref-type="bibr" rid="ref54">Orr et al., 2005</xref>; <xref ref-type="bibr" rid="ref37">IPCC, 2013</xref>). As the most complicated and productive ecosystems, coastal oceans generally consist of diversiform but tightly connected aquatic environments, such as rivers, estuaries, tidal wetlands, and sea margins, all of which are strongly influenced by climatic and anthropogenic factors (<xref ref-type="bibr" rid="ref16">Cai et al., 2011</xref>; <xref ref-type="bibr" rid="ref51">Melzner et al., 2012</xref>; <xref ref-type="bibr" rid="ref64">Wallace et al., 2014</xref>). Recent syntheses of the air-sea CO<sub>2</sub> fluxes in coastal waters suggest that CO<sub>2</sub> uptake in coastal ecosystems has reached to 0.22&#x2013;0.45 Pg C yr.<sup>&#x2212;1</sup>, which is expected to affect the global carbon flux (<xref ref-type="bibr" rid="ref15">Cai et al., 2006</xref>; <xref ref-type="bibr" rid="ref9">Bauer et al., 2013</xref>; <xref ref-type="bibr" rid="ref58">Regnier et al., 2013</xref>). In addition to a large CO<sub>2</sub> sink for the atmosphere, ocean acidification in coastal habitats was also reported to be amplified by eutrophication and hypoxia, and these regions might be grimmer by future climate change than previously thought (<xref ref-type="bibr" rid="ref16">Cai et al., 2011</xref>; <xref ref-type="bibr" rid="ref51">Melzner et al., 2012</xref>; <xref ref-type="bibr" rid="ref64">Wallace et al., 2014</xref>). Therefore, the subsequent effects of ocean acidification on coastal life have become one of the most important issues.</p>
<p>Microorganisms exist everywhere and are abundant in density and genetic diversity (<xref ref-type="bibr" rid="ref7">Azam and Worden, 2004</xref>; <xref ref-type="bibr" rid="ref6">Azam and Malfatti, 2007</xref>). It has been estimated that microorganisms account for more than two-thirds of marine biomass, despite their tiny size (<xref ref-type="bibr" rid="ref8">Bar-On and Milo, 2019</xref>). Furthermore, they are key components of the marine food web and play crucial roles in marine ecosystem function and carbon cycling (<xref ref-type="bibr" rid="ref4">Azam, 1998</xref>; <xref ref-type="bibr" rid="ref39">Jiao et al., 2010</xref>). The responses of microorganisms to climate change (e.g., ocean acidification) will be pivotal for the marine food web and the biogeochemical cycle in the future ocean. The responses of cyanobacteria, as important primary producers in the ocean, to elevated <italic>p</italic>CO<sub>2</sub> have been investigated in terms of their growth rates, photosynthesis, carbon concentration mechanisms, and cellular affinities for inorganic carbon (<xref ref-type="bibr" rid="ref28">Fu et al., 2007</xref>; <xref ref-type="bibr" rid="ref27">Flombaum et al., 2013</xref>; <xref ref-type="bibr" rid="ref25">Dutkiewicz et al., 2015</xref>; <xref ref-type="bibr" rid="ref36">Hutchins and Fu, 2017</xref>; <xref ref-type="bibr" rid="ref47">Ma and Wang, 2021</xref>). With a higher abundance than cyanobacteria by 1&#x2013;2 orders of magnitude, heterotrophic bacteria play a major role in recycling dissolved organic carbon and nutrients through the microbial loop; however, far less studies were conducted on relationships between heterotrophic bacteria and ocean acidification than phytoplankton (<xref ref-type="bibr" rid="ref5">Azam et al., 1983</xref>; <xref ref-type="bibr" rid="ref4">Azam, 1998</xref>; <xref ref-type="bibr" rid="ref59">Robinson and Ramaiah, 2011</xref>). Previous studies have shown that responses of bacterioplankton communities to elevated <italic>p</italic>CO<sub>2</sub> are diverse and complex and even conflicting. Bacterioplankton communities were found to be susceptible to changes in <italic>p</italic>CO<sub>2</sub> or pH in some studies that were reflected in abundance, diversity, or composition (<xref ref-type="bibr" rid="ref42">Krause et al., 2012</xref>; <xref ref-type="bibr" rid="ref70">Zhang et al., 2013</xref>; <xref ref-type="bibr" rid="ref68">Xia et al., 2019</xref>; <xref ref-type="bibr" rid="ref1">Aguayo et al., 2020</xref>; <xref ref-type="bibr" rid="ref23">Crummett, 2020</xref>), whereas other studies reported negligible effects (<xref ref-type="bibr" rid="ref60">Roy et al., 2013</xref>; <xref ref-type="bibr" rid="ref53">Oliver et al., 2014</xref>; <xref ref-type="bibr" rid="ref66">Wang et al., 2015</xref>). Take coastal ecosystems for example, microbial community from coastal ecosystem with naturally low pH (average=7.8) was still sensitive to acidification (<xref ref-type="bibr" rid="ref23">Crummett, 2020</xref>). However, recent evidence demonstrated that bacterioplankton community from variable coastal ecosystem was relatively stable under elevated <italic>p</italic>CO<sub>2</sub> condition (<xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>). The relationships between bacterioplankton communities and elevated <italic>p</italic>CO<sub>2</sub> were more likely to be associated with environmental characteristics, such as nutrients and temperature (<xref ref-type="bibr" rid="ref10">Bergen et al., 2016</xref>; <xref ref-type="bibr" rid="ref61">Sala and Aparicio, 2016</xref>; <xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>; <xref ref-type="bibr" rid="ref67">Wang et al., 2021</xref>). Nevertheless, most studies on this topic have been performed in mesotrophic high-latitude regions, especially the Arctic Ocean, while less investigations were conducted in eutrophic low- and middle-latitude coastal ecosystems.</p>
<p>As a subtropical coastal region, Xiamen Bay is characterized by the input of nutrient-rich freshwater from Jiulong River, intrusion of saltwater from the South China Sea, and inflow of artificial wastewater, as well as being affected by intensive human activities (<xref ref-type="bibr" rid="ref20">Chen et al., 2013</xref>; <xref ref-type="bibr" rid="ref14">Cai et al., 2016</xref>). The Xiamen coastal ecosystem has showed nutrient-enhanced eutrophication since mid-1990s because of its hydrographical setting (<xref ref-type="bibr" rid="ref20">Chen et al., 2013</xref>; <xref ref-type="bibr" rid="ref14">Cai et al., 2016</xref>; <xref ref-type="bibr" rid="ref29">Fu et al., 2016</xref>). Analyses of the long-term variations in the concentrations of nutrients in Xiamen coastal seawater suggest that dissolved inorganic nitrogen and phosphate have increased by several fold over recent decades (<xref ref-type="bibr" rid="ref14">Cai et al., 2016</xref>). A time series sampling investigation revealed that the concentration of dissolved organic matter has even in Xiamen coastal ecosystem (<xref ref-type="bibr" rid="ref21">Chen et al., 2021b</xref>). And estuarine input contributed a mass of dissolved organic matter, including humic-like fluorescent dissolved organic matter, S-containing, and N-containing organic molecules, to the coastal ecosystem (<xref ref-type="bibr" rid="ref21">Chen et al., 2021b</xref>). In addition to eutrophication, interactions between anthropogenic CO<sub>2</sub> emissions and local drivers in coastal ecosystems (such as eutrophication, hypoxia, and biological activities) result in complex regulation of the pH and carbon cycle in coastal waters (<xref ref-type="bibr" rid="ref16">Cai et al., 2011</xref>; <xref ref-type="bibr" rid="ref51">Melzner et al., 2012</xref>; <xref ref-type="bibr" rid="ref64">Wallace et al., 2014</xref>). Analyses of the annual variations in water quality indices in Xiamen Bay from 1986 to 2007 revealed that the mean pH values ranged from 7.86 to 8.21 and continuously decreased (<xref ref-type="bibr" rid="ref14">Cai et al., 2016</xref>). To investigate the effects of elevated <italic>p</italic>CO<sub>2</sub> on bacterioplankton community at such a changing environment, a 5-day microcosm incubation experiment with eutrophic coastal water from Xiamen Bay under elevated <italic>p</italic>CO<sub>2</sub> and ambient conditions was conducted. During the incubation, the response of bacterioplankton community structure to elevated CO<sub>2</sub> and the population size of bacterioplankton were continuously detected.</p>
</sec>
<sec id="sec2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="sec3">
<title>Location and Experimental Setup</title>
<p>The microcosm experiment was carried out in March 2013 using surface seawater collected from a site east of Xiamen, China (24&#x00B0;29&#x2032;47&#x2033;N, 118&#x00B0;14&#x2032;12&#x2033;E; <xref rid="fig1" ref-type="fig">Figure 1A</xref>). Environmental parameters, such as pH, temperature, salinity, and dissolved oxygen, were measured <italic>in situ</italic> using a YSI Professional Plus multiparameter meter (YSI Incorporated, Yellow Springs, OH, United States). For nutrients analysis, water samples were filtered through a 0.45&#x03BC;m cellulose acetate filter and stored at &#x2212;20&#x00B0;C. The nitrite (NO<sub>2</sub><sup>&#x2212;</sup>), nitrate (NO<sub>3</sub><sup>&#x2212;</sup>), phosphate (PO<sub>4</sub><sup>3&#x2212;</sup>), and silicate (SiO<sub>3</sub><sup>2&#x2212;</sup>) concentrations were analyzed according to colorimetric method with a Technicon AA3 Auto-Analyzer (Bran+Lube, GmbH, Norderstedt, Germany; <xref ref-type="bibr" rid="ref24">Dai et al., 2008</xref>; <xref ref-type="bibr" rid="ref32">Han et al., 2012</xref>). To determine microbial abundance, samples (1.98ml for each one) were fixed with a final concentration of 0.5% glutaraldehyde (Sangon Biotech, Shanghai, China) for 15&#x2013;30min at room temperature (about 25&#x00B0;C), flash-frozen in liquid nitrogen, and then kept at &#x2212;80&#x00B0;C until analysis (<xref ref-type="bibr" rid="ref50">Marie et al., 1997</xref>).</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption><p>Location of sampling station <bold>(A)</bold> and setup of microcosm experiment <bold>(B)</bold>. The mesocosms were treated with two levels of <italic>p</italic>CO<sub>2</sub>, HC (about 1,000 &#x03BC;atm) and control (about 380&#x2013;410 &#x03BC;atm), and incubated under dark (0 &#x03BC;E m<sup>&#x2212;2</sup> s<sup>&#x2212;1</sup>) and light (64.4 &#x03BC;E m<sup>&#x2212;2</sup> s<sup>&#x2212;1</sup>) cycles at approximately <italic>in situ</italic> temperature (about 17.5&#x00B0;C). Map is colored according to the pH values of seawater around Xiamen Island. Map was constructed using Ocean Data View software (version 5.3.0).</p></caption>
<graphic xlink:href="fmicb-12-730377-g001.tif"/>
</fig>
<p>The microcosm experimental design is shown in <xref rid="fig1" ref-type="fig">Figure 1B</xref>. Briefly, a total of 80L of surface seawater were collected and pre-filtered through a 20&#x03BC;m mesh to remove the large-size fraction. The pre-filtered seawater was then distributed into 20L polycarbonate bottles (Nalgene, United States), with approximately 60&#x2013;70% of light transmittance, that served as the experimental microcosms (<xref ref-type="bibr" rid="ref31">Ha et al., 2013</xref>). To simulate atmospheric CO<sub>2</sub> concentrations currently and by the end of this century, two levels of <italic>p</italic>CO<sub>2</sub> (ambient air was set as control, about 380&#x2013;410 &#x03BC;atm; elevated <italic>p</italic>CO<sub>2</sub> was set as HC treatment, about 1,000 &#x03BC;atm) were obtained by adjusting ambient air with CO<sub>2</sub> using an enrichment device (Wuhan Ruihua Instrument and Equipment, Wuhan, China). For equilibration of the carbonate system, bubbling was continued throughout the experiment. The pH was monitored using a pH detector (Thermo Scientific, Waltham, MA, United States) during the whole incubation period (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 1</xref>). The microcosms were incubated under a 12h light (64.4 &#x03BC;E m<sup>&#x2212;2</sup> s<sup>&#x2212;1</sup>) and 12h dark (0 &#x03BC;E m<sup>&#x2212;2</sup> s<sup>&#x2212;1</sup>) cycle at approximately <italic>in situ</italic> temperature (about 17.5&#x00B0;C), using a light incubator equipped with fluorescent lamps of 400&#x2013;700nm wavelength (PGX-450B-HM, Ningbo Saifu, China). Two replications were established for the HC treatment and the control. During 5-days of incubation, subsamples were collected from all microcosms every other day to determine the chlorophyll <italic>a</italic> (Chl <italic>a</italic>) concentration and the microbial abundance and community structure.</p>
</sec>
<sec id="sec4">
<title>Measurements of Chlorophyll <italic>a</italic> Concentration and Microbial Abundance</title>
<p>For Chl <italic>a</italic> determination, about 100ml water samples were filtered onto GF/F filters (25mm, Whatman, Sigma-Aldrich, MO, United States) and extracted overnight at 4&#x00B0;C in absolute methanol. Then, each sample was centrifuged at 5,000&#x00D7; <italic>g</italic> for 10min to remove particulates, and the absorbance of the supernatant was determined using a UV-VIS spectrophotometer (Beckman Coulter, Brea, CA, United States). The Chl <italic>a</italic> content was calculated according to the formulae reported by <xref ref-type="bibr" rid="ref56">Porra (2002)</xref>.</p>
<p>Total bacterioplankton (including autotrophic and heterotrophic bacteria), virioplankton, and autotrophic picoplankton were counted with a flow cytometer (Epics Altra II, Beckman Coulter, United States; <xref ref-type="bibr" rid="ref50">Marie et al., 1997</xref>; <xref ref-type="bibr" rid="ref40">Jiao et al., 2002</xref>; <xref ref-type="bibr" rid="ref11">Brussaard, 2004</xref>; <xref ref-type="bibr" rid="ref12">Brussaard et al., 2010</xref>). After thawing, bacterioplankton samples were diluted in Tris-EDTA buffer (pH=8, Sigma-Aldrich) and then stained with SYBR Green I (10,000&#x00D7; final concentration in DMSO, Molecular Probes, Invitrogen, Carlsbad, CA, United States) for 15min in the dark at room temperature (about 25&#x00B0;C). Samples for virus counting were dyed with SYBR Green I for 10min at 80&#x00B0;C in the dark before analyzed. Abundance of autotrophic picoplankton (picoeukaryote, <italic>Synechococcus</italic>, and <italic>Prochlorococcus</italic>) could be directly detected by flow cytometry without dyeing. As an internal standard, 10&#x03BC;l of 1&#x03BC;m diameter fluorescent microspheres (Molecular Probes Inc.) was added to all samples before flow cytometry analysis. The data were obtained and analyzed with EXPOTM<sup>32</sup> MultiCOMP software (Beckman Coulter) and FCM Express software (<italic>De Novo</italic> Software, version 3). Green fluorescence and side scatter were recorded and used as discriminators of bacterioplankton and virioplankton, while autotrophic picoplankton was identified in the plots of side scatter vs. red fluorescence and orange fluorescence vs. red fluorescence.</p>
</sec>
<sec id="sec5">
<title>DNA Extraction, PCR, and Sequencing</title>
<p>Microbial cells were collected from a 1 L sample of each microcosm for bacterial community structure analysis using membrane filtration (0.22&#x03BC;m-pore-size Isopore membrane, Millipore, Billerica, MA, United States). To avoid nucleic acid degradation, samples were flash-frozen in liquid nitrogen and stored at &#x2212;80&#x00B0;C until DNA extraction. Parallel samples were mixed, and total genomic DNA was extracted using a bacterial DNA extraction kit (Tiangen DP302, Beijing, China) following the manufacturer&#x2019;s instructions. Amplification, library construction, and sequencing of the extracted DNA were conducted by the Shanghai Personal Biotechnology Co., Ltd. (Shanghai, China). The V4 region of the bacterial 16S rRNA gene was amplified with the primers 520F (5'&#x2013; GCACCTAAYTGGGYDTAAAGNG&#x2013;3') and 802R (5'&#x2013;TACNVGGGTATCTAATCC&#x2013;3'; <xref ref-type="bibr" rid="ref46">Lu et al., 2018</xref>; <xref ref-type="bibr" rid="ref71">Zhu et al., 2018</xref>). The DNA libraries were constructed using a TruSeq Nano DNA LT Library Prep Kit (Illumina, San Diego, CA, United States) following the preparation guide, and the amplicons were sequenced on the Illumina Miseq PE300 Platform.</p>
</sec>
<sec id="sec6">
<title>Sequence Assignment and Data Analysis</title>
<p>All sequence analyses were performed using fast length adjustment of SHort reads version 1.2.7 (FLASH) and quantitative insights into microbial ecology version 1.8.0 (QIIME; <xref ref-type="bibr" rid="ref18">Caporaso et al., 2010</xref>; <xref ref-type="bibr" rid="ref49">Magoc and Salzberg, 2011</xref>). A total of 291,315 raw sequences were obtained, and high-quality sequences (quality score&#x2265;Q20 and without poly-N strings) longer than 150bp were reserved. The unique operational taxonomic units (OTUs) were clustered at 97% sequence similarity. The OTUs with only one sequence (singleton) were eliminated, and the same number of sequences from each sample were subsampled for further analysis. Classification was carried out using the SILVA database (release 132) with 80% cutoff (<xref ref-type="bibr" rid="ref57">Quast et al., 2013</xref>). Rarefaction curves based on the identified OTUs were estimated by PAST (version 3.18; <xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 2</xref>). The Good&#x2019;s coverage, richness (Chao1), and diversity (Simpson&#x2019;s and Shannon&#x2019;s) indexes were calculated using QIIME. Clustering and non-metric multidimensional scaling (NMDS) analysis based on Bray-Curtis similarity of OTUs relative abundance were carried out using PRIMER 6 (version 6.1.16). To determine significant differences in bacterioplankton communities between HC and control and among different sampling days, the analysis of similarity (ANOSIM) was tested using PRIMER 6.</p>
</sec>
<sec id="sec7">
<title>Statistical Analyses</title>
<p>The significance of differences in Chl <italic>a</italic> content, total bacterioplankton abundance, viral abundance, and Good&#x2019;s coverage, Chao1, Shannon&#x2019;s, and Simpson&#x2019;s indexes between HC and the control were assessed by the paired-samples <italic>t</italic>-test using PASW statistical software (version 18.0.0). To determine the significance of differences in bacterioplankton communities between HC and the control and among different sampling times, statistical analysis of similarities was conducted using PRIMER 6. Significant differences in bacterioplankton community composition between HC and control at the phylum, class, order, family, and genus levels were detected using the statistical analysis of metagenomic profiles (STAMP) software package (<xref ref-type="bibr" rid="ref55">Parks et al., 2014</xref>). To explore the relationship between bacterioplankton communities and environmental variables (pH, Chl <italic>a</italic>, bacterial abundance, and viral abundance), distance-based multivariate regression analysis (DistLM) was carried out using forward selection in Primer 6 with the PERMANOVA+ add on package (version 1.0.6).</p>
</sec>
</sec>
<sec id="sec8" sec-type="results">
<title>Results</title>
<sec id="sec9">
<title>Environmental Conditions</title>
<p>The abiotic and biotic characteristics of <italic>in situ</italic> seawater are shown in <xref ref-type="supplementary-material" rid="SM1">Supplementary Table 1</xref>. The initial pH value of seawater was 7.55, while the mean pH value of global seawater is estimated to be about 8.1. The temperature of the seawater collection was 17.5&#x00B0;C, and this temperature was maintained during the incubation period. The sampling station was located at a subtropical coastal ecosystem that was affected by saline water from the South China Sea. Therefore, the salinity at this location (31.55) was higher than that at other areas around Xiamen (about 23.86-30.00, unpublished data), and this result was consistent with prior studies (<xref ref-type="bibr" rid="ref45">Liu et al., 2017</xref>; <xref ref-type="bibr" rid="ref65">Wang et al., 2019</xref>). The collected seawater had an initial dissolved oxygen concentration of 8.68mgl<sup>&#x2212;1</sup>. Similar to the results of other studies, the seawater was eutrophic and the nutrient concentrations of NO<sub>2</sub><sup>&#x2212;</sup>, NO<sub>3</sub><sup>&#x2212;</sup>, PO<sub>4</sub><sup>3&#x2212;</sup>, and SiO<sub>3</sub><sup>2&#x2212;</sup> were 7.11, 51.66, 1.38, and 34.40&#x03BC;moll<sup>&#x2212;1</sup>, respectively (<xref ref-type="bibr" rid="ref22">Chen et al., 2019</xref>; <xref ref-type="bibr" rid="ref65">Wang et al., 2019</xref>). The abundance of <italic>in situ</italic> bacterioplankton (1.43&#x00B1;0.07&#x00D7;10<sup>6</sup> cells ml<sup>&#x2212;1</sup>) at the sampling station was consistent with published values for Xiamen Bay (<xref ref-type="bibr" rid="ref65">Wang et al., 2019</xref>). The abundance of <italic>Synechococcus</italic> and picoeukaryotes was 2.40&#x00B1;0.15&#x00D7;10<sup>3</sup> cells ml<sup>&#x2212;1</sup> and 1.09&#x00B1;0.00&#x00D7;10<sup>4</sup> cells ml<sup>&#x2212;1</sup>, respectively. In addition, no <italic>Prochlorococcus</italic> was detected at the sampling site.</p>
</sec>
<sec id="sec10">
<title>Dynamics of Bacterioplankton Abundance</title>
<p>During the 5-day incubation period, phytoplankton abundance was assessed by the Chl <italic>a</italic> concentration, which increased from 1.39&#x00B1;0.00&#x03BC;gl<sup>&#x2212;1</sup> to 26.70&#x00B1;3.29&#x03BC;gl<sup>&#x2212;1</sup> in HC and from 0.93&#x00B1;0.00&#x03BC;gl<sup>&#x2212;1</sup> to 31.10&#x00B1;4.27&#x03BC;gl<sup>&#x2212;1</sup> in the control in the first 3-days and declined afterward (<xref rid="fig2" ref-type="fig">Figure 2A</xref>), and no significant difference in Chl <italic>a</italic> between HC and the control was found (<italic>t</italic>-test, <italic>p</italic>&#x003E;0.05). The abundance of total bacterioplankton increased on day 1, dropped to the lowest values of 1.75&#x00B1;0.11&#x00D7;10<sup>6</sup> cells ml<sup>&#x2212;1</sup> in HC and 1.72&#x00B1;0.22&#x00D7;10<sup>6</sup> cells ml<sup>&#x2212;1</sup> in the control on day 3, and then slightly increased toward the end of the incubation period (<xref rid="fig2" ref-type="fig">Figure 2B</xref>). In addition, bacterial abundance was insensitive to elevated <italic>p</italic>CO<sub>2</sub>, although it was slightly higher in HC than in the control on day 1 of incubation. The bacterioplankton grew preferentially on the first day but not keep increasing concomitant with phytoplankton in the following days, and nutrients competition may be one of the reasons for the different growth patterns of bacterioplankton and phytoplankton (<xref ref-type="bibr" rid="ref63">Thingstad et al., 2008</xref>; <xref ref-type="bibr" rid="ref69">Zhang et al., 2017</xref>; <xref ref-type="bibr" rid="ref35">Huang et al., 2018</xref>). During the incubation period, viral abundance in both HC and the control remained nearly constant with a range of 1.16&#x2013;1.91&#x00D7;10<sup>7</sup> particles ml<sup>&#x2212;1</sup>, and no significant difference between HC and the control was observed (<italic>t</italic>-test, <italic>p</italic>&#x003E;0.05).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption><p>Changes in Chl <italic>a</italic> concentration <bold>(A)</bold> and total bacterioplankton abundance <bold>(B)</bold> during incubation under elevated <italic>p</italic>CO<sub>2</sub> (HC, about 1,000 &#x03BC;atm) or ambient <italic>p</italic>CO<sub>2</sub> (Control, about 380&#x2013;410 &#x03BC;atm) conditions in microcosm experiment. Error bars indicated SD of replicate samples.</p></caption>
<graphic xlink:href="fmicb-12-730377-g002.tif"/>
</fig>
</sec>
<sec id="sec11">
<title>Bacterioplankton Community Composition</title>
<p>After screening and quality control, a total of 230,562 high-quality sequences were obtained from all samples. Subsamples with 8,832 sequences from each sample were clustered into 403 to 686 OTUs at the 97% sequence similarity level (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table 2</xref>). The richness of the bacterioplankton community was found to be invariable in the first 3-days but decreased to 71.33% in HC and 56.53% in the control on day 5 of the incubation period. Although the bacterioplankton community richness did change during the incubation period, it did not significantly differ between HC and the control (<italic>t</italic>-test, <italic>p</italic>&#x003E;0.05; <xref rid="fig3" ref-type="fig">Figure 3</xref>). Likewise, bacterioplankton community diversity, as indicated by Shannon&#x2019;s and Simpson&#x2019;s indexes, decreased slightly on the last day and was not affected by elevated <italic>p</italic>CO<sub>2</sub> (<italic>t</italic>-test, <italic>p</italic>&#x003E;0.05; <xref rid="fig3" ref-type="fig">Figure 3</xref>). The results of the clustering and NMDS analyses showed that the bacterioplankton community composition changed during the incubation and was significantly different on day 5 of the incubation period than on other days (<xref rid="fig4" ref-type="fig">Figure 4</xref>). Further analyses revealed that the temporal shift in bacterioplankton community composition was significant (ANOSIM global test: global <italic>R</italic>=1, <italic>p</italic>=0.01). However, there was no evidence that elevated <italic>p</italic>CO<sub>2</sub> affect the bacterioplankton community composition (ANOSIM global test: global <italic>R</italic>=&#x2212;0.222, <italic>p</italic>&#x003E;0.05).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption><p>Bacterioplankton community richness <bold>(A)</bold> and diversity <bold>(B,C)</bold> in elevated <italic>p</italic>CO<sub>2</sub> (HC, about 1,000 &#x03BC;atm) and ambient <italic>p</italic>CO<sub>2</sub> (Control, about 380&#x2013;410 &#x03BC;atm) conditions. Changes in Chao1 index, Simpson&#x2019;s index, and Shannon&#x2019;s index over time are shown on the left. Boxplots on the right show responses of Chao1 index, Simpson&#x2019;s index, and Shannon&#x2019;s index to elevated <italic>p</italic>CO<sub>2</sub> throughout the whole experiment.</p></caption>
<graphic xlink:href="fmicb-12-730377-g003.tif"/>
</fig>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption><p>Clustering <bold>(A)</bold> and non-metric multidimensional scaling (NMDS; <bold>B)</bold> analyses showing relationships between the bacterioplankton communities in elevated <italic>p</italic>CO<sub>2</sub> (HC, about 1,000 &#x03BC;atm, solid circles) and ambient <italic>p</italic>CO<sub>2</sub> (Control, about 380&#x2013;410 &#x03BC;atm, hollow circles) conditions during microcosm experiment. Similarities were based on Bray-Curtis similarity. Samples were clustered at a similarity level of 70% in NMDS analysis.</p></caption>
<graphic xlink:href="fmicb-12-730377-g004.tif"/>
</fig>
<p>Overall, bacterioplankton communities were allocated to 26, 44, 125, 198, and 372 groups at the phylum, class, order, family, and genus levels, respectively (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table 3</xref>). Bacterioplankton community compositions at the phylum, class, order, family, and genus levels (with relative abundance higher than 1%) are shown in <xref rid="fig5" ref-type="fig">Figure 5</xref>. Proteobacteria, which mainly consisted of Alphaproteobacteria and Gammaproteobacteria, were predominant in both HC and the control throughout the incubation period, accounting for about 57.17% of the bacterioplankton community (<xref rid="fig5" ref-type="fig">Figure 5</xref>). Bacteroidetes, Actinobacteria, Cyanobacteria, and Epsilonbacteraeota were also abundant in all microcosms and were not affected by elevated <italic>p</italic>CO<sub>2</sub> (<xref rid="fig5" ref-type="fig">Figures 5</xref>, <xref rid="fig6" ref-type="fig">6</xref>). The relative abundance of Bacteroidetes increased by about three-fold during the incubation period, while the proportion of Actinobacteria decreased to 16.67% (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 3</xref>). As expected, Cyanobacteria reached to the highest abundance after 3-day incubation and were insensitive to elevated <italic>p</italic>CO<sub>2</sub>, consistent with the Chl <italic>a</italic> concentration (<xref ref-type="supplementary-material" rid="SM1">Supplementary Figure 3</xref>; <xref rid="fig6" ref-type="fig">Figure 6</xref>). Likewise, bacterial groups at finer levels varied over time but did not differ significantly between HC and the control (STAMP analysis, <italic>p</italic>&#x003E;0.05; <xref rid="fig5" ref-type="fig">Figures 5</xref>, <xref rid="fig6" ref-type="fig">6</xref>). These results suggested that dominant groups constantly changed over time resulting in a prominent temporal shift in the bacterioplankton community. However, contrary to our expectation, the relative abundance of these taxa did not differ significantly between HC and the control (<italic>t</italic>-test, <italic>p</italic>&#x003E;0.05), indicating that the bacterioplankton community from the Xiamen coastal ecosystem remained stable under elevated <italic>p</italic>CO<sub>2</sub> conditions upon a short-term incubation.</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption><p>Composition of bacterioplankton community at the phylum <bold>(A)</bold>, class <bold>(B)</bold>, order <bold>(C)</bold>, family <bold>(D),</bold> and genus <bold>(E)</bold> levels in elevated <italic>p</italic>CO<sub>2</sub> (HC, about 1,000 &#x03BC;atm) and ambient <italic>p</italic>CO<sub>2</sub> (Control, about 380&#x2013;410 &#x03BC;atm) conditions during incubation. Charts show relative abundance of taxa present at &#x003E;1%.</p></caption>
<graphic xlink:href="fmicb-12-730377-g005.tif"/>
</fig>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption><p>STAMP analysis of relative abundance of bacterioplankton communities at the phylum <bold>(A)</bold>, class <bold>(B)</bold>, order <bold>(C)</bold>, family <bold>(D),</bold> and genus <bold>(E)</bold> levels between elevated <italic>p</italic>CO<sub>2</sub> (HC, about 1,000 &#x03BC;atm) and ambient <italic>p</italic>CO<sub>2</sub> (Control) conditions.</p></caption>
<graphic xlink:href="fmicb-12-730377-g006.tif"/>
</fig>
<p>To identify the potential drivers of changes in the bacterioplankton community, DistLM-forward analysis was carried out to explore the relationships between environmental variables and the bacterioplankton community. However, the bacterioplankton community was not significantly correlated with any of the variables of the microcosms in this study, indicating that these variables could not explain the changes in the bacterioplankton community during the incubation period (<xref rid="tab1" ref-type="table">Table 1</xref>).</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption><p>Relationship between bacterioplankton communities and environmental variables (pH, Chl <italic>a</italic>, bacterial abundance and viral abundance) in microcosms as determined by distance-based multivariate regression analysis with forward selection (DistLM-forward).</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top">Variables</th>
<th align="center" valign="top">Pseudo-F</th>
<th align="center" valign="top"><italic>P</italic></th>
<th align="center" valign="top"><italic>r</italic><sup>2</sup></th>
<th align="center" valign="top">Prop.</th>
<th align="center" valign="top">Cumulative</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Chl <italic>a</italic></td>
<td align="center" valign="top">1.6012</td>
<td align="center" valign="top">0.1701</td>
<td align="center" valign="top">0.2429</td>
<td align="center" valign="top">0.2426</td>
<td align="center" valign="top">0.2426</td>
</tr>
<tr>
<td align="left" valign="top">Bacterial abundance</td>
<td align="center" valign="top">2.1094</td>
<td align="center" valign="top">0.1233</td>
<td align="center" valign="top">0.5041</td>
<td align="center" valign="top">0.2615</td>
<td align="center" valign="top">0.5041</td>
</tr>
<tr>
<td align="left" valign="top">pH</td>
<td align="center" valign="top">0.8383</td>
<td align="center" valign="top">0.5331</td>
<td align="center" valign="top">0.6124</td>
<td align="center" valign="top">0.1083</td>
<td align="center" valign="top">0.6124</td>
</tr>
<tr>
<td align="left" valign="top">Viral abundance</td>
<td align="center" valign="top">0.6514</td>
<td align="center" valign="top">0.6497</td>
<td align="center" valign="top">0.7076</td>
<td align="center" valign="top">0.0952</td>
<td align="center" valign="top">0.7076</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>The response variables were transformed in log (X+1) and then converted into Euclidian distance similarities matrices. The Pseudo-F and the values of p were obtained by permutation (n=9,999)</italic>.</p>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec id="sec12" sec-type="discussions">
<title>Discussion</title>
<p>Our results showed that both the population size and community structure of bacterioplankton were not significantly affected by elevated <italic>p</italic>CO<sub>2</sub> during 5-days of incubation, indicating that the bacterioplankton community in the coastal Xiamen Bay ecosystem was adaptable to the short-term elevated <italic>p</italic>CO<sub>2</sub>. Similar results were also observed in earlier investigations (<xref ref-type="bibr" rid="ref30">Grossart et al., 2006</xref>; <xref ref-type="bibr" rid="ref52">Newbold et al., 2012</xref>; <xref ref-type="bibr" rid="ref53">Oliver et al., 2014</xref>). For instance, elevated <italic>p</italic>CO<sub>2</sub> did not significantly affect the total bacterial cell count distributions in a marine picoplankton community under phytoplankton pre-bloom and post-bloom conditions (<xref ref-type="bibr" rid="ref52">Newbold et al., 2012</xref>). Bacterioplankton communities were found to be highly resistant to short-term catastrophic <italic>p</italic>CO<sub>2</sub> perturbation in a mesocosm experiment, and no significant differences in community abundance, structure, or composition were observed (<xref ref-type="bibr" rid="ref53">Oliver et al., 2014</xref>).</p>
<p>Recently, a hypothesis was re-proposed that environmental stability might influence the sensitivity of the bacterioplankton community to climate change (<xref ref-type="bibr" rid="ref44">Liu et al., 2010</xref>; <xref ref-type="bibr" rid="ref41">Joint et al., 2011</xref>; <xref ref-type="bibr" rid="ref67">Wang et al., 2021</xref>). In other words, many bacterioplankton communities are already adapted to changing environments due to long-term exposure to variable environmental conditions and subsequent influence. The evidence to date suggests that coastal communities might be more resistant or flexible under changing environmental conditions than communities in more stable environments such as open ocean gyres (<xref ref-type="bibr" rid="ref67">Wang et al., 2021</xref>). In addition, many studies have detected minor effects of elevated <italic>p</italic>CO<sub>2</sub> on bacterial abundance, while only few studies showed statistical significant responses which were mainly conducted in oligotrophic oceans, implying that nutrients might be an important influence on the relationship between bacterial population size and elevated <italic>p</italic>CO<sub>2</sub> (<xref ref-type="bibr" rid="ref30">Grossart et al., 2006</xref>; <xref ref-type="bibr" rid="ref3">Allgaier et al., 2008</xref>; <xref ref-type="bibr" rid="ref52">Newbold et al., 2012</xref>; <xref ref-type="bibr" rid="ref48">Maas et al., 2013</xref>; <xref ref-type="bibr" rid="ref10">Bergen et al., 2016</xref>; <xref ref-type="bibr" rid="ref43">Lin et al., 2018</xref>; <xref ref-type="bibr" rid="ref38">James et al., 2019</xref>; <xref ref-type="bibr" rid="ref68">Xia et al., 2019</xref>; <xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>; <xref ref-type="bibr" rid="ref23">Crummett, 2020</xref>; <xref ref-type="bibr" rid="ref34">Hu et al., 2021</xref>). Similarly, significant impacts of elevated <italic>p</italic>CO<sub>2</sub> on bacterioplankton community diversity and composition also have been reported to be associated with nutrient regimes (<xref ref-type="bibr" rid="ref60">Roy et al., 2013</xref>; <xref ref-type="bibr" rid="ref61">Sala and Aparicio, 2016</xref>; <xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>). By way of illustration, bacterioplankton community composition changed consistently in response to elevated <italic>p</italic>CO<sub>2</sub> at the ultra-oligotrophic center of the South Pacific gyre, while no significant <italic>p</italic>CO<sub>2</sub> treatment effect was found at the mesotrophic fringe of the South Pacific gyre (<xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>). In general, therefore, it seems that bacterioplankton communities from coastal ecosystems were more stable in response to elevated <italic>p</italic>CO<sub>2</sub> and these ecosystems were always characterized as rapidly changing and eutrophic.</p>
<p>The Xiamen coastal ecosystem is a typical subtropical coastal ecosystem that is subjected to complex geographical and environmental influences. One of the consequences caused by anthropogenic activities and hydrological factors was the drastic pH fluctuation in Xiamen coastal ecosystem. The highest pH value of Xiamen coastal water has exceeded 8.5, and the lowest was under 7.5 for the last few decades (<xref ref-type="bibr" rid="ref14">Cai et al., 2016</xref>). In addition, the probability of acid rain in Xiamen reached up to 68.8%, and this might also contribute to the low pH of the seawater.<xref rid="fn0001" ref-type="fn"><sup>1</sup></xref> Therefore, the bacterioplankton community in the Xiamen coastal region has already experienced the average surface ocean pH predicted to occur at the end of the century or even lower. Previous studies showed that the bacterioplankton community composition in an elevated <italic>p</italic>CO<sub>2</sub> mesocosm would be more conserved through time and resistant to CO<sub>2</sub> perturbation (<xref ref-type="bibr" rid="ref53">Oliver et al., 2014</xref>). In addition, the variable pH in coastal ecosystems should also consider the effects of biological activity although the changes might be contrary to expectation in the future ocean. Biological driven diel fluctuations in pH could reach to 0.3&#x2013;0.5 pH units in coastal ecosystems and even exceed 0.5 pH units during phytoplankton blooms or red tides (<xref ref-type="bibr" rid="ref41">Joint et al., 2011</xref>; <xref ref-type="bibr" rid="ref33">Hendriks et al., 2015</xref>). According to the records of red tide outbreak in the Xiamen coastal ecosystem, a total of 53 red tide events were recorded from 1986 to 2017 (<xref ref-type="bibr" rid="ref19">Chen et al., 2021a</xref>). All these evidence indicated that the Xiamen coastal seawater has undergo drastic pH fluctuations on daily, seasonal, and even inter-annual scales. The coastal bacterioplankton communities in this area have probably adapted to these changes through processes including physiological acclimation and evolution (<xref ref-type="bibr" rid="ref26">Evans and Hofmann, 2012</xref>). Moreover, as a result of the complexity and fluctuation in coastal habitats, bacterioplankton communities in coastal ecosystems were suggested to be highly variable reflecting the heterogeneity. And this heterogeneity might play a role in community stability (<xref ref-type="bibr" rid="ref72">Zinger et al., 2011</xref>; <xref ref-type="bibr" rid="ref62">Shade et al., 2012</xref>).</p>
<p>Prior studies have also noted the importance of trophic states in the response of the bacterioplankton community to ocean acidification. Bacterioplankton communities were suggested to be more resistant to ocean acidification in nutrient-rich waters (<xref ref-type="bibr" rid="ref60">Roy et al., 2013</xref>; <xref ref-type="bibr" rid="ref61">Sala and Aparicio, 2016</xref>; <xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>). There was an experimental demonstration of the trophic effect in response of bacterioplankton to elevated <italic>p</italic>CO<sub>2</sub> revealed that more pronounced pH homeostasis genes were aroused to cope with pH stress in oligotrophic marine environments compared with high-nutrient conditions (<xref ref-type="bibr" rid="ref13">Bunse et al., 2016</xref>). Additionally, the high expression levels of pH homeostasis genes in some bacterial groups are at the expense of growth, and this can ultimately affect the composition and diversity of the bacterioplankton community (<xref ref-type="bibr" rid="ref13">Bunse et al., 2016</xref>; <xref ref-type="bibr" rid="ref2">Allen et al., 2020</xref>). However, the energy cost of pH homeostasis expression was not necessary for bacterial cells in eutrophic oceans. The evidence thus far supports the idea that physiological acclimation of the bacterioplankton community to elevated <italic>p</italic>CO<sub>2</sub> is highly possible in eutrophic and highly changeable primitive environments.</p>
<p>Our results differ from those of a previous study on phytoplankton from the Xiamen nearshore, which showed that CO<sub>2</sub> enrichment enhanced the relative abundance of Flavobacteria during the early stage of a phytoplankton bloom (<xref ref-type="bibr" rid="ref43">Lin et al., 2018</xref>). Notably, we used <italic>in situ</italic> bacterioplankton communities in our study, while the previous study introduced an artificial phytoplankton community into mesocosms system and conducted the incubation for a longer period (<xref ref-type="bibr" rid="ref43">Lin et al., 2018</xref>). Therefore, one explanation for the differences in results might be that our 5-day incubation was too short to detect the long-term responses of the bacterioplankton community to seawater acidification, since Flavobacteria only showed increased relative abundance in the HC treatments at day 10 in the study of <xref ref-type="bibr" rid="ref43">Lin et al. (2018)</xref>. Another possible explanation is that artificial phytoplankton inoculated in the mesocosms influenced the competitive ability of Flavobacteria group at high <italic>p</italic>CO<sub>2</sub> level. In addition, the possible interference of bacterial community (including Flavobacteria) of the inoculated phytoplankton cultures could not be ruled out although the authors thought natural bacterioplankton was the determiner of responses to different CO<sub>2</sub> concentrations.</p>
</sec>
<sec id="sec13" sec-type="conclusions">
<title>Conclusion</title>
<p>Bacterioplankton communities response to elevated <italic>p</italic>CO<sub>2</sub> in coastal regions are supposed to be foresight and important. Our results suggest the bacterioplankton community in the coastal region of Xiamen appears to be adaptable to the short-term elevated <italic>p</italic>CO<sub>2</sub> on account of the eutrophic and changeable habitat. To understand the ecological processes and mechanism underlined these phenomena, better experimental setup (e.g., &#x003E;3 replicates), more comprehensive analysis of relevant environmental parameters (such as dynamics of organic and inorganic nutrients) and including other ecological components (e.g., heterotrophic nanoflagellates and phytoplankton) are required. In addition, given the influences of long-term environmental exposures on microbial phenotypic plasticity, acclimation, and evolutionary adaptation, this study cannot rule out the long-term effects of ocean acidification on coastal bacterioplankton communities. Thus, further experimentation at multiple temporal scales are needed to address issues related to acclimation and adaptation. Considering the diversification of coastal marine ecosystems caused by specific hydrogeological conditions and anthropogenic activities, predicting how coastal bacterioplankton communities will respond to elevated <italic>p</italic>CO<sub>2</sub> requires more investigations in more coastal ecosystems. Overall, the findings of this study contribute to our knowledge of bacterioplankton community responses to ocean acidification in coastal area and highlight the need for further research toward to understanding the long-term effects of ocean acidification on dynamic coastal ecosystems.</p>
</sec>
<sec id="sec14" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The data presented in the study are deposited in the national center for biotechnology information (NCBI) sequence read archive (SRA) repository, accession numbers SRR14766467&#x2013;SRR14766473 (BioProject accession number PRJNA736025; BioSample accession numbers SAMN19606215&#x2013;SAMN19606221). The names of the repository/repositories and accession number(s) can be found at: <ext-link xlink:href="https://www.ncbi.nlm.nih.gov/sra/PRJNA736025" ext-link-type="uri">https://www.ncbi.nlm.nih.gov/sra/PRJNA736025</ext-link>, PRJNA736025.</p>
</sec>
<sec id="sec15">
<title>Author Contributions</title>
<p>RZ and NJ supervised the project and revised manuscript. FZ and YY performed the experiments. YY, FZ, XC, HL, and RZ analyzed data and wrote the manuscript. All authors interpreted the data and gave comments on the manuscript.</p>
</sec>
<sec id="sec41" sec-type="funding-information">
<title>Funding</title>
<p>This study was supported by the National Key Research and Development Program of China (2020YFA0608300, 2021YFE0193000), National Natural Science Foundation (41861144018), China Postdoctoral Science Foundation (2019 M662237), the Senior User Project of RV KEXUE (KEXUE2020G10) from Center for Ocean Mega-Science, Chinese Academy of Sciences, and China Scholarship Council.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec18" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<p>The authors thank Wenfang Lin, Jia Sun, Jianning Wang and other colleagues for assistance with in situ sampling and parameters determination. The authors also thank Hong Chen and Yu Wang for their suggestions on data analysis.</p>
</ack>
<sec id="sec17" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2021.730377/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2021.730377/full#supplementary-material</ext-link>.</p>
<supplementary-material xlink:href="Data_Sheet_1.zip" id="SM1" mimetype="application/zip" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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<ref-list>
<title>References</title>
<ref id="ref1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aguayo</surname> <given-names>P.</given-names></name> <name><surname>Campos</surname> <given-names>V. L.</given-names></name> <name><surname>Henriquez</surname> <given-names>C.</given-names></name> <name><surname>Olivares</surname> <given-names>F.</given-names></name> <name><surname>De Ia Iglesia</surname> <given-names>R.</given-names></name> <name><surname>Ulloa</surname> <given-names>O.</given-names></name> <etal/></person-group>. (<year>2020</year>). <article-title>The influence of <italic>p</italic>CO<sub>2</sub>-driven ocean acidification on open ocean bacterial communities during a short-term microcosm experiment in the eastern tropical South Pacific (ETSP) off northern Chile</article-title>. <source>Microorganisms.</source> <volume>8</volume>:<fpage>1924</fpage>. doi: <pub-id pub-id-type="doi">10.3390/microorganisms8121924</pub-id>, PMID: <pub-id pub-id-type="pmid">33291533</pub-id></citation></ref>
<ref id="ref2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Allen</surname> <given-names>R.</given-names></name> <name><surname>Hoffmann</surname> <given-names>L. J.</given-names></name> <name><surname>Law</surname> <given-names>C. S.</given-names></name> <name><surname>Summerfield</surname> <given-names>T. C.</given-names></name></person-group> (<year>2020</year>). <article-title>Subtle bacterioplankton community responses to elevated CO<sub>2</sub> and warming in the oligotrophic South Pacific gyre</article-title>. <source>Environ. Microbiol. Rep.</source> <volume>12</volume>, <fpage>377</fpage>&#x2013;<lpage>386</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1758-2229.12844</pub-id>, PMID: <pub-id pub-id-type="pmid">32307860</pub-id></citation></ref>
<ref id="ref3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Allgaier</surname> <given-names>M.</given-names></name> <name><surname>Riebesell</surname> <given-names>U.</given-names></name> <name><surname>Vogt</surname> <given-names>M.</given-names></name> <name><surname>Thyrhaug</surname> <given-names>R.</given-names></name> <name><surname>Grossart</surname> <given-names>H.-P.</given-names></name></person-group> (<year>2008</year>). <article-title>Coupling of heterotrophic bacteria to phytoplankton bloom development at different <italic>p</italic>CO<sub>2</sub> levels: a mesocosm study</article-title>. <source>Biogeosciences</source> <volume>5</volume>, <fpage>1007</fpage>&#x2013;<lpage>1022</lpage>. doi: <pub-id pub-id-type="doi">10.5194/bg-5-1007-2008</pub-id></citation></ref>
<ref id="ref4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Azam</surname> <given-names>F.</given-names></name></person-group> (<year>1998</year>). <article-title>Microbial control of oceanic carbon flux the plot thickens</article-title>. <source>Science</source> <volume>280</volume>, <fpage>694</fpage>&#x2013;<lpage>696</lpage>. doi: <pub-id pub-id-type="doi">10.1126/science.280.5364.694</pub-id></citation></ref>
<ref id="ref5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Azam</surname> <given-names>F.</given-names></name> <name><surname>Fenchel</surname> <given-names>T.</given-names></name> <name><surname>Field</surname> <given-names>J. G.</given-names></name> <name><surname>Gray</surname> <given-names>J. S.</given-names></name> <name><surname>Meyer-Reil</surname> <given-names>L. A.</given-names></name> <name><surname>Thingstad</surname> <given-names>F.</given-names></name></person-group> (<year>1983</year>). <article-title>The ecological role of water-column microbes in the sea</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>10</volume>, <fpage>257</fpage>&#x2013;<lpage>263</lpage>. doi: <pub-id pub-id-type="doi">10.3354/meps010257</pub-id></citation></ref>
<ref id="ref6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Azam</surname> <given-names>F.</given-names></name> <name><surname>Malfatti</surname> <given-names>F.</given-names></name></person-group> (<year>2007</year>). <article-title>Microbial structuring of marine ecosystems</article-title>. <source>Nat. Rev. Microbiol.</source> <volume>5</volume>, <fpage>782</fpage>&#x2013;<lpage>791</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nrmicro1747</pub-id>, PMID: <pub-id pub-id-type="pmid">17853906</pub-id></citation></ref>
<ref id="ref7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Azam</surname> <given-names>F.</given-names></name> <name><surname>Worden</surname> <given-names>A. Z.</given-names></name></person-group> (<year>2004</year>). <article-title>Microbes, molecules, and marine ecosystems</article-title>. <source>Science</source> <volume>303</volume>, <fpage>1622</fpage>&#x2013;<lpage>1624</lpage>. doi: <pub-id pub-id-type="doi">10.1126/science.1093892</pub-id>, PMID: <pub-id pub-id-type="pmid">15016987</pub-id></citation></ref>
<ref id="ref8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bar-On</surname> <given-names>Y. M.</given-names></name> <name><surname>Milo</surname> <given-names>R.</given-names></name></person-group> (<year>2019</year>). <article-title>The biomass composition of the oceans: A blueprint of our blue planet</article-title>. <source>Cell</source> <volume>179</volume>, <fpage>1451</fpage>&#x2013;<lpage>1454</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.cell.2019.11.018</pub-id>, PMID: <pub-id pub-id-type="pmid">31835026</pub-id></citation></ref>
<ref id="ref9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bauer</surname> <given-names>J. E.</given-names></name> <name><surname>Cai</surname> <given-names>W. J.</given-names></name> <name><surname>Raymond</surname> <given-names>P. A.</given-names></name> <name><surname>Bianchi</surname> <given-names>T. S.</given-names></name> <name><surname>Hopkinson</surname> <given-names>C. S.</given-names></name> <name><surname>Regnier</surname> <given-names>P. A.</given-names></name></person-group> (<year>2013</year>). <article-title>The changing carbon cycle of the coastal ocean</article-title>. <source>Nature</source> <volume>504</volume>, <fpage>61</fpage>&#x2013;<lpage>70</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nature12857</pub-id>, PMID: <pub-id pub-id-type="pmid">24305149</pub-id></citation></ref>
<ref id="ref10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bergen</surname> <given-names>B.</given-names></name> <name><surname>Endres</surname> <given-names>S.</given-names></name> <name><surname>Engel</surname> <given-names>A.</given-names></name> <name><surname>Zark</surname> <given-names>M.</given-names></name> <name><surname>Dittmar</surname> <given-names>T.</given-names></name> <name><surname>Sommer</surname> <given-names>U.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosms</article-title>. <source>Environ. Microbiol.</source> <volume>18</volume>, <fpage>4579</fpage>&#x2013;<lpage>4595</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1462-2920.13549</pub-id>, PMID: <pub-id pub-id-type="pmid">27690275</pub-id></citation></ref>
<ref id="ref11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brussaard</surname> <given-names>C. P. D.</given-names></name></person-group> (<year>2004</year>). <article-title>Optimization of procedures for counting viruses by flow cytometry</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>70</volume>, <fpage>1506</fpage>&#x2013;<lpage>1513</lpage>. doi: <pub-id pub-id-type="doi">10.1128/aem.70.3.1506-1513.2004</pub-id>, PMID: <pub-id pub-id-type="pmid">15006772</pub-id></citation></ref>
<ref id="ref12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brussaard</surname> <given-names>C. P. D.</given-names></name> <name><surname>Payet</surname> <given-names>J. P.</given-names></name> <name><surname>Winter</surname> <given-names>C.</given-names></name> <name><surname>Weinbauer</surname> <given-names>M. G.</given-names></name></person-group> (<year>2010</year>). <article-title>Quantification of aquatic viruses by flow cytometry</article-title>. <source>Manual Aquantic Viral Ecology.</source> <volume>11</volume>, <fpage>102</fpage>&#x2013;<lpage>109</lpage>. doi: <pub-id pub-id-type="doi">10.4319/mave.2010.978-0-9845591-0-7.102</pub-id></citation></ref>
<ref id="ref13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bunse</surname> <given-names>C.</given-names></name> <name><surname>Lundin</surname> <given-names>D.</given-names></name> <name><surname>Karlsson</surname> <given-names>C. M. G.</given-names></name> <name><surname>Akram</surname> <given-names>N.</given-names></name> <name><surname>Vila-Costa</surname> <given-names>M.</given-names></name> <name><surname>Palovaara</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Response of marine bacterioplankton pH homeostasis gene expression to elevated CO<sub>2</sub></article-title>. <source>Nat. Clim. Chang.</source> <volume>6</volume>, <fpage>483</fpage>&#x2013;<lpage>487</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nclimate2914</pub-id></citation></ref>
<ref id="ref14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cai</surname> <given-names>M.</given-names></name> <name><surname>Liu</surname> <given-names>Y.</given-names></name> <name><surname>Chen</surname> <given-names>K.</given-names></name> <name><surname>Huang</surname> <given-names>D.</given-names></name> <name><surname>Yang</surname> <given-names>S.</given-names></name></person-group> (<year>2016</year>). <article-title>Quantitative analysis of anthropogenic influences on coastal water &#x2013; A new perspective</article-title>. <source>Ecol. Indic.</source> <volume>67</volume>, <fpage>673</fpage>&#x2013;<lpage>683</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecolind.2016.03.037</pub-id></citation></ref>
<ref id="ref15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cai</surname> <given-names>W. J.</given-names></name> <name><surname>Dai</surname> <given-names>M.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name></person-group> (<year>2006</year>). <article-title>Air-sea exchange of carbon dioxide in ocean margins: A province-based synthesis</article-title>. <source>Geophys. Res. Lett.</source> <volume>33</volume>, <fpage>1</fpage>&#x2013;<lpage>4</lpage>. doi: <pub-id pub-id-type="doi">10.1029/2006GL026219</pub-id></citation></ref>
<ref id="ref16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cai</surname> <given-names>W. J.</given-names></name> <name><surname>Lohrenz</surname> <given-names>S. E.</given-names></name> <name><surname>Chou</surname> <given-names>W. C.</given-names></name> <name><surname>Zhai</surname> <given-names>W.</given-names></name> <name><surname>Hollibaugh</surname> <given-names>J. T.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>Acidification of subsurface coastal waters enhanced by eutrophication</article-title>. <source>Nat. Geosci.</source> <volume>4</volume>, <fpage>766</fpage>&#x2013;<lpage>770</lpage>. doi: <pub-id pub-id-type="doi">10.1038/ngeo1297</pub-id></citation></ref>
<ref id="ref17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Caldeira</surname> <given-names>K.</given-names></name> <name><surname>Wickett</surname> <given-names>M. E.</given-names></name></person-group> (<year>2003</year>). <article-title>Anthropogenic carbon and ocean pH</article-title>. <source>Nature</source> <volume>425</volume>:<fpage>365</fpage>. doi: <pub-id pub-id-type="doi">10.1038/425365a</pub-id>, PMID: <pub-id pub-id-type="pmid">14508477</pub-id></citation></ref>
<ref id="ref18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Caporaso</surname> <given-names>J. G.</given-names></name> <name><surname>Kuczynski</surname> <given-names>J.</given-names></name> <name><surname>Stombaugh</surname> <given-names>J.</given-names></name> <name><surname>Bittinger</surname> <given-names>K.</given-names></name> <name><surname>Bushman</surname> <given-names>F. D.</given-names></name> <name><surname>Costello</surname> <given-names>E. K.</given-names></name> <etal/></person-group>. (<year>2010</year>). <article-title>QIIME allows analysis of high-throughput community sequencing data</article-title>. <source>Nat. Methods</source> <volume>7</volume>, <fpage>335</fpage>&#x2013;<lpage>336</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nmeth.f.303</pub-id>, PMID: <pub-id pub-id-type="pmid">20383131</pub-id></citation></ref>
<ref id="ref19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>B.</given-names></name> <name><surname>Wang</surname> <given-names>K.</given-names></name> <name><surname>Dong</surname> <given-names>X.</given-names></name> <name><surname>Lin</surname> <given-names>H.</given-names></name></person-group> (<year>2021a</year>). <article-title>Long-term changes in red tide outbreaks in Xiamen Bay in China from 1986 to 2017</article-title>. <source>Estuar. Coast. Shelf Sci.</source> <volume>249</volume>:<fpage>107095</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecss.2020.107095</pub-id></citation></ref>
<ref id="ref20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>N.</given-names></name> <name><surname>Peng</surname> <given-names>B.</given-names></name> <name><surname>Hong</surname> <given-names>H.</given-names></name> <name><surname>Turyaheebwa</surname> <given-names>N.</given-names></name> <name><surname>Cui</surname> <given-names>S.</given-names></name> <name><surname>Mo</surname> <given-names>X.</given-names></name></person-group> (<year>2013</year>). <article-title>Nutrient enrichment and N:P ratio decline in a coastal bay-river system in Southeast China: The need for a dual nutrient (N and P) management strategy</article-title>. <source>Ocean Coast. Manage.</source> <volume>81</volume>, <fpage>7</fpage>&#x2013;<lpage>13</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ocecoaman.2012.07.013</pub-id></citation></ref>
<ref id="ref21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>Q.</given-names></name> <name><surname>Chen</surname> <given-names>F.</given-names></name> <name><surname>Gonsior</surname> <given-names>M.</given-names></name> <name><surname>Li</surname> <given-names>Y.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>He</surname> <given-names>C.</given-names></name> <etal/></person-group>. (<year>2021b</year>). <article-title>Correspondence between DOM molecules and microbial community in a subtropical coastal estuary on a spatiotemporal scale</article-title>. <source>Environ. Int.</source> <volume>154</volume>:<fpage>106558</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.envint.2021.106558</pub-id>, PMID: <pub-id pub-id-type="pmid">33878614</pub-id></citation></ref>
<ref id="ref22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chen</surname> <given-names>X.</given-names></name> <name><surname>Ma</surname> <given-names>R.</given-names></name> <name><surname>Yang</surname> <given-names>Y.</given-names></name> <name><surname>Jiao</surname> <given-names>N.</given-names></name> <name><surname>Zhang</surname> <given-names>R.</given-names></name></person-group> (<year>2019</year>). <article-title>Viral regulation on bacterial community impacted by lysis-lysogeny switch: A microcosm experiment in eutrophic coastal waters</article-title>. <source>Front. Microbiol.</source> <volume>10</volume>:<fpage>1763</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2019.01763</pub-id></citation></ref>
<ref id="ref23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Crummett</surname> <given-names>L. T.</given-names></name></person-group> (<year>2020</year>). <article-title>Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high <italic>p</italic>CO<sub>2</sub></article-title>. <source>PLoS One</source> <volume>15</volume>:<fpage>e0241183</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0241183</pub-id>, PMID: <pub-id pub-id-type="pmid">33112901</pub-id></citation></ref>
<ref id="ref24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dai</surname> <given-names>M.</given-names></name> <name><surname>Wang</surname> <given-names>L.</given-names></name> <name><surname>Guo</surname> <given-names>X.</given-names></name> <name><surname>Zhai</surname> <given-names>W.</given-names></name> <name><surname>Li</surname> <given-names>Q.</given-names></name> <name><surname>He</surname> <given-names>B.</given-names></name> <etal/></person-group>. (<year>2008</year>). <article-title>Nitrification and inorganic nitrogen distribution in a large perturbed river/estuarine system: the Pearl River estuary, China</article-title>. <source>Biogeosciences</source> <volume>5</volume>, <fpage>1227</fpage>&#x2013;<lpage>1244</lpage>. doi: <pub-id pub-id-type="doi">10.5194/bg-5-1227-2008</pub-id></citation></ref>
<ref id="ref25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dutkiewicz</surname> <given-names>S.</given-names></name> <name><surname>Morris</surname> <given-names>J. J.</given-names></name> <name><surname>Follows</surname> <given-names>M. J.</given-names></name> <name><surname>Scott</surname> <given-names>J.</given-names></name> <name><surname>Levitan</surname> <given-names>O.</given-names></name> <name><surname>Dyhrman</surname> <given-names>S. T.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Impact of ocean acidification on the structure of future phytoplankton communities</article-title>. <source>Nat. Clim. Chang.</source> <volume>5</volume>, <fpage>1002</fpage>&#x2013;<lpage>1006</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nclimate2722</pub-id></citation></ref>
<ref id="ref26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Evans</surname> <given-names>T. G.</given-names></name> <name><surname>Hofmann</surname> <given-names>G. E.</given-names></name></person-group> (<year>2012</year>). <article-title>Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change</article-title>. <source>Philos. Trans. R. Soc. Lond. Ser. B Biol. Sci.</source> <volume>367</volume>, <fpage>1733</fpage>&#x2013;<lpage>1745</lpage>. doi: <pub-id pub-id-type="doi">10.1098/rstb.2012.0019</pub-id>, PMID: <pub-id pub-id-type="pmid">22566679</pub-id></citation></ref>
<ref id="ref27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Flombaum</surname> <given-names>P.</given-names></name> <name><surname>Gallegos</surname> <given-names>J. L.</given-names></name> <name><surname>Gordillo</surname> <given-names>R. A.</given-names></name> <name><surname>Rinc&#x00F3;n</surname> <given-names>J.</given-names></name> <name><surname>Zabala</surname> <given-names>L. L.</given-names></name> <name><surname>Jiao</surname> <given-names>N.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Present and future global distributions of the marine cyanobacteria <italic>Prochlorococcus</italic> and <italic>Synechococcus</italic></article-title>. <source>Proc. Natl. Acad. Sci. U. S. A.</source> <volume>110</volume>, <fpage>9824</fpage>&#x2013;<lpage>9829</lpage>. doi: <pub-id pub-id-type="doi">10.1073/pnas.1307701110</pub-id>, PMID: <pub-id pub-id-type="pmid">23703908</pub-id></citation></ref>
<ref id="ref28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fu</surname> <given-names>F. X.</given-names></name> <name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Zhang</surname> <given-names>Y.</given-names></name> <name><surname>Feng</surname> <given-names>Y.</given-names></name> <name><surname>Hutchins</surname> <given-names>D. A.</given-names></name></person-group> (<year>2007</year>). <article-title>Effects of increased temperature and CO<sub>2</sub> on photosynthesis, growth, and elemental ratios in marine <italic>Synechococcus</italic> and <italic>Prochlorococcus</italic> (cyanobacteria)</article-title>. <source>J. Phycol.</source> <volume>43</volume>, <fpage>485</fpage>&#x2013;<lpage>496</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1529-8817.2007.00355.x</pub-id></citation></ref>
<ref id="ref29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fu</surname> <given-names>T.</given-names></name> <name><surname>Chen</surname> <given-names>B.</given-names></name> <name><surname>Ji</surname> <given-names>W.</given-names></name> <name><surname>Chen</surname> <given-names>H.</given-names></name> <name><surname>Chen</surname> <given-names>W.</given-names></name> <name><surname>Dong</surname> <given-names>X.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Size structure of phytoplankton community and its response to environmental factors in Xiamen Bay China</article-title>. <source>Environ. Earth Sci.</source> <volume>75</volume>:<fpage>734</fpage>. doi: <pub-id pub-id-type="doi">10.1007/s12665-016-5552-2</pub-id></citation></ref>
<ref id="ref30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Grossart</surname> <given-names>H.-P.</given-names></name> <name><surname>Allgaier</surname> <given-names>M.</given-names></name> <name><surname>Passow</surname> <given-names>U.</given-names></name> <name><surname>Riebesell</surname> <given-names>U.</given-names></name></person-group> (<year>2006</year>). <article-title>Testing the effect of CO<sub>2</sub> concentration on the dynamics of marine heterotrophic</article-title>. <source>Limnol. Oceanogr.</source> <volume>51</volume>, <fpage>1</fpage>&#x2013;<lpage>11</lpage>. doi: <pub-id pub-id-type="doi">10.4319/lo.2006.51.1.0001</pub-id></citation></ref>
<ref id="ref31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ha</surname> <given-names>S.-Y.</given-names></name> <name><surname>Joo</surname> <given-names>H.-M.</given-names></name> <name><surname>Kang</surname> <given-names>S.-H.</given-names></name> <name><surname>Ahn</surname> <given-names>I.-Y.</given-names></name> <name><surname>Shin</surname> <given-names>K.-H.</given-names></name></person-group> (<year>2013</year>). <article-title>Effect of ultraviolet irradiation on the production and composition of fatty acids in plankton in a sub-Antarctic environment</article-title>. <source>J. Oceanogr.</source> <volume>70</volume>, <fpage>1</fpage>&#x2013;<lpage>10</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s10872-013-0207-3</pub-id></citation></ref>
<ref id="ref32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Han</surname> <given-names>A.</given-names></name> <name><surname>Dai</surname> <given-names>M.</given-names></name> <name><surname>Kao</surname> <given-names>S.-J.</given-names></name> <name><surname>Gan</surname> <given-names>J.</given-names></name> <name><surname>Li</surname> <given-names>Q.</given-names></name> <name><surname>Wang</surname> <given-names>L.</given-names></name> <etal/></person-group>. (<year>2012</year>). <article-title>Nutrient dynamics and biological consumption in a large continental shelf system under the influence of both a river plume and coastal upwelling</article-title>. <source>Limnol. Oceanogr.</source> <volume>57</volume>, <fpage>486</fpage>&#x2013;<lpage>502</lpage>. doi: <pub-id pub-id-type="doi">10.4319/lo.2012.57.2.048E</pub-id></citation></ref>
<ref id="ref33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hendriks</surname> <given-names>I. E.</given-names></name> <name><surname>Duarte</surname> <given-names>C. M.</given-names></name> <name><surname>Olsen</surname> <given-names>Y. S.</given-names></name> <name><surname>Steckbauer</surname> <given-names>A.</given-names></name> <name><surname>Ramajo</surname> <given-names>L.</given-names></name> <name><surname>Moore</surname> <given-names>T. S.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Biological mechanisms supporting adaptation to ocean acidification in coastal ecosystems</article-title>. <source>Estuar. Coast. Shelf Sci.</source> <volume>152</volume>, <fpage>A1</fpage>&#x2013;<lpage>A8</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecss.2014.07.019</pub-id></citation></ref>
<ref id="ref34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hu</surname> <given-names>C.</given-names></name> <name><surname>Li</surname> <given-names>X.</given-names></name> <name><surname>He</surname> <given-names>M.</given-names></name> <name><surname>Jiang</surname> <given-names>P.</given-names></name> <name><surname>Long</surname> <given-names>A.</given-names></name> <name><surname>Xu</surname> <given-names>J.</given-names></name></person-group> (<year>2021</year>). <article-title>Effect of ocean acidification on bacterial metabolic activity and community composition in oligotrophic oceans, inferred from short-term bioassays</article-title>. <source>Front. Microbiol.</source> <volume>12</volume>:<fpage>583982</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2021.583982</pub-id></citation></ref>
<ref id="ref35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Huang</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>X.</given-names></name> <name><surname>Laws</surname> <given-names>E. A.</given-names></name> <name><surname>Chen</surname> <given-names>B.</given-names></name> <name><surname>Li</surname> <given-names>Y.</given-names></name> <name><surname>Xie</surname> <given-names>Y.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Effects of increasing atmospheric CO<sub>2</sub> on the marine phytoplankton and bacterial metabolism during a bloom: A coastal mesocosm study</article-title>. <source>Sci. Total Environ.</source> <volume>633</volume>, <fpage>618</fpage>&#x2013;<lpage>629</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2018.03.222</pub-id></citation></ref>
<ref id="ref36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hutchins</surname> <given-names>D. A.</given-names></name> <name><surname>Fu</surname> <given-names>F. X.</given-names></name></person-group> (<year>2017</year>). <article-title>Microorganisms and ocean global change</article-title>. <source>Nat. Microbiol.</source> <volume>2</volume>:<fpage>17058</fpage>. doi: <pub-id pub-id-type="doi">10.1038/nmicrobiol.2017.58</pub-id></citation></ref>
<ref id="ref37"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll1">IPCC</collab></person-group> (<year>2013</year>). <source>Climate Change 2013: The Physical Science Basis.</source> <publisher-loc>New York</publisher-loc>: <publisher-name>Cambridge University Press</publisher-name>.</citation></ref>
<ref id="ref38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>James</surname> <given-names>A. K.</given-names></name> <name><surname>Kelly</surname> <given-names>L. W.</given-names></name> <name><surname>Nelson</surname> <given-names>C. E.</given-names></name> <name><surname>Wilbanks</surname> <given-names>E. G.</given-names></name> <name><surname>Carlson</surname> <given-names>C. A.</given-names></name></person-group> (<year>2019</year>). <article-title>Elevated <italic>p</italic>CO<sub>2</sub> alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter</article-title>. <source>Environ. Microbiol.</source> <volume>21</volume>, <fpage>541</fpage>&#x2013;<lpage>556</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1462-2920.14484</pub-id>, PMID: <pub-id pub-id-type="pmid">30461157</pub-id></citation></ref>
<ref id="ref39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jiao</surname> <given-names>N.</given-names></name> <name><surname>Herndl</surname> <given-names>G. J.</given-names></name> <name><surname>Hansell</surname> <given-names>D. A.</given-names></name> <name><surname>Benner</surname> <given-names>R.</given-names></name> <name><surname>Kattner</surname> <given-names>G.</given-names></name> <name><surname>Wilhelm</surname> <given-names>S. W.</given-names></name> <etal/></person-group>. (<year>2010</year>). <article-title>Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean</article-title>. <source>Nat. Rev. Microbiol.</source> <volume>8</volume>, <fpage>593</fpage>&#x2013;<lpage>599</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nrmicro2386</pub-id>, PMID: <pub-id pub-id-type="pmid">20601964</pub-id></citation></ref>
<ref id="ref40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jiao</surname> <given-names>N.</given-names></name> <name><surname>Yang</surname> <given-names>Y.</given-names></name> <name><surname>Koshikawa</surname> <given-names>H.</given-names></name> <name><surname>Watanabe</surname> <given-names>M.</given-names></name></person-group> (<year>2002</year>). <article-title>Influence of hydrographic conditions on picoplankton distribution in the East China Sea</article-title>. <source>Aquat. Microb. Ecol.</source> <volume>30</volume>, <fpage>37</fpage>&#x2013;<lpage>48</lpage>. doi: <pub-id pub-id-type="doi">10.3354/ame030037</pub-id></citation></ref>
<ref id="ref41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Joint</surname> <given-names>I.</given-names></name> <name><surname>Doney</surname> <given-names>S. C.</given-names></name> <name><surname>Karl</surname> <given-names>D. M.</given-names></name></person-group> (<year>2011</year>). <article-title>Will ocean acidification affect marine microbes?</article-title> <source>ISME J.</source> <volume>5</volume>, <fpage>1</fpage>&#x2013;<lpage>7</lpage>. doi: <pub-id pub-id-type="doi">10.1038/ismej.2010.79</pub-id>, PMID: <pub-id pub-id-type="pmid">20535222</pub-id></citation></ref>
<ref id="ref42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Krause</surname> <given-names>E.</given-names></name> <name><surname>Wichels</surname> <given-names>A.</given-names></name> <name><surname>Gimenez</surname> <given-names>L.</given-names></name> <name><surname>Lunau</surname> <given-names>M.</given-names></name> <name><surname>Schilhabel</surname> <given-names>M. B.</given-names></name> <name><surname>Gerdts</surname> <given-names>G.</given-names></name></person-group> (<year>2012</year>). <article-title>Small changes in pH have direct effects on marine bacterial community composition: a microcosm approach</article-title>. <source>PLoS One</source> <volume>7</volume>:<fpage>e47035</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0047035</pub-id>, PMID: <pub-id pub-id-type="pmid">23071704</pub-id></citation></ref>
<ref id="ref43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lin</surname> <given-names>X.</given-names></name> <name><surname>Huang</surname> <given-names>R.</given-names></name> <name><surname>Li</surname> <given-names>Y.</given-names></name> <name><surname>Li</surname> <given-names>F.</given-names></name> <name><surname>Wu</surname> <given-names>Y.</given-names></name> <name><surname>Hutchins</surname> <given-names>D. A.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Interactive network configuration maintains bacterioplankton community structure under elevated CO<sub>2</sub> in a eutrophic coastal mesocosm experiment</article-title>. <source>Biogeosciences</source> <volume>15</volume>, <fpage>551</fpage>&#x2013;<lpage>565</lpage>. doi: <pub-id pub-id-type="doi">10.5194/bg-15-551-2018</pub-id></citation></ref>
<ref id="ref44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>J.</given-names></name> <name><surname>Weinbauer</surname> <given-names>M. G.</given-names></name> <name><surname>Maier</surname> <given-names>C.</given-names></name> <name><surname>Dai</surname> <given-names>M.</given-names></name> <name><surname>Gattuso</surname> <given-names>J. P.</given-names></name></person-group> (<year>2010</year>). <article-title>Effect of ocean acidification on microbial diversity and on microbe-driven biogeochemistry and ecosystem functioning</article-title>. <source>Aquat. Microb. Ecol.</source> <volume>61</volume>, <fpage>291</fpage>&#x2013;<lpage>305</lpage>. doi: <pub-id pub-id-type="doi">10.3354/ame01446</pub-id></citation></ref>
<ref id="ref45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>L.</given-names></name> <name><surname>Cai</surname> <given-names>L.</given-names></name> <name><surname>Zhang</surname> <given-names>R.</given-names></name></person-group> (<year>2017</year>). <article-title>Co-existence of freshwater and marine T4-like myoviruses in a typical subtropical estuary</article-title>. <source>FEMS Microbiol. Ecol.</source> <volume>93</volume>:<fpage>fix119</fpage>. doi: <pub-id pub-id-type="doi">10.1093/femsec/fix119</pub-id>, PMID: <pub-id pub-id-type="pmid">29099976</pub-id></citation></ref>
<ref id="ref46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lu</surname> <given-names>Y.</given-names></name> <name><surname>Feng</surname> <given-names>L.</given-names></name> <name><surname>Yang</surname> <given-names>G.</given-names></name> <name><surname>Yang</surname> <given-names>Q.</given-names></name> <name><surname>Zhang</surname> <given-names>X.</given-names></name> <name><surname>Mu</surname> <given-names>J.</given-names></name></person-group> (<year>2018</year>). <article-title>Intensification and microbial pathways of simultaneous nitrification-denitrification in a sequencing batch biofilm reactor for seawater-based saline wastewater treatment</article-title>. <source>J. Chem. Technol. Biotechnol.</source> <volume>93</volume>, <fpage>2766</fpage>&#x2013;<lpage>2773</lpage>. doi: <pub-id pub-id-type="doi">10.1002/jctb.5652</pub-id></citation></ref>
<ref id="ref47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ma</surname> <given-names>J.</given-names></name> <name><surname>Wang</surname> <given-names>P.</given-names></name></person-group> (<year>2021</year>). <article-title>Effects of rising atmospheric CO<sub>2</sub> levels on physiological response of cyanobacteria and cyanobacterial bloom development: A review</article-title>. <source>Sci. Total Environ.</source> <volume>754</volume>:<fpage>141889</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.scitotenv.2020.141889</pub-id></citation></ref>
<ref id="ref48"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Maas</surname> <given-names>E. W.</given-names></name> <name><surname>Law</surname> <given-names>C. S.</given-names></name> <name><surname>Hall</surname> <given-names>J. A.</given-names></name> <name><surname>Pickmere</surname> <given-names>S.</given-names></name> <name><surname>Currie</surname> <given-names>K. I.</given-names></name> <name><surname>Chang</surname> <given-names>F. H.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Effect of ocean acidification on bacterial abundance, activity and diversity in the Ross Sea</article-title>. <source>Antarctica. Aquat. Microb. Ecol.</source> <volume>70</volume>, <fpage>1</fpage>&#x2013;<lpage>15</lpage>. doi: <pub-id pub-id-type="doi">10.3354/ame01633</pub-id></citation></ref>
<ref id="ref49"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Magoc</surname> <given-names>T.</given-names></name> <name><surname>Salzberg</surname> <given-names>S. L.</given-names></name></person-group> (<year>2011</year>). <article-title>FLASH: fast length adjustment of short reads to improve genome assemblies</article-title>. <source>Bioinformatics</source> <volume>27</volume>, <fpage>2957</fpage>&#x2013;<lpage>2963</lpage>. doi: <pub-id pub-id-type="doi">10.1093/bioinformatics/btr507</pub-id>, PMID: <pub-id pub-id-type="pmid">21903629</pub-id></citation></ref>
<ref id="ref50"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Marie</surname> <given-names>D.</given-names></name> <name><surname>Partensky</surname> <given-names>F.</given-names></name> <name><surname>Jacquet</surname> <given-names>S.</given-names></name> <name><surname>Vaulot</surname> <given-names>D.</given-names></name></person-group> (<year>1997</year>). <article-title>Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR green I</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>63</volume>, <fpage>186</fpage>&#x2013;<lpage>193</lpage>. doi: <pub-id pub-id-type="doi">10.1128/aem.63.1.186-193.1997</pub-id>, PMID: <pub-id pub-id-type="pmid">16535483</pub-id></citation></ref>
<ref id="ref51"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Melzner</surname> <given-names>F.</given-names></name> <name><surname>Thomsen</surname> <given-names>J.</given-names></name> <name><surname>Koeve</surname> <given-names>W.</given-names></name> <name><surname>Oschlies</surname> <given-names>A.</given-names></name> <name><surname>Gutowska</surname> <given-names>M. A.</given-names></name> <name><surname>Bange</surname> <given-names>H. W.</given-names></name> <etal/></person-group>. (<year>2012</year>). <article-title>Future Ocean acidification will be amplified by hypoxia in coastal habitats</article-title>. <source>Mar. Biol.</source> <volume>160</volume>, <fpage>1875</fpage>&#x2013;<lpage>1888</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s00227-012-1954-1</pub-id></citation></ref>
<ref id="ref52"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Newbold</surname> <given-names>L. K.</given-names></name> <name><surname>Oliver</surname> <given-names>A. E.</given-names></name> <name><surname>Booth</surname> <given-names>T.</given-names></name> <name><surname>Tiwari</surname> <given-names>B.</given-names></name> <name><surname>DeSantis</surname> <given-names>T.</given-names></name> <name><surname>Maguire</surname> <given-names>M.</given-names></name> <etal/></person-group>. (<year>2012</year>). <article-title>The response of marine picoplankton to ocean acidification</article-title>. <source>Environ. Microbiol.</source> <volume>14</volume>, <fpage>2293</fpage>&#x2013;<lpage>2307</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1462-2920.2012.02762.x</pub-id>, PMID: <pub-id pub-id-type="pmid">22591022</pub-id></citation></ref>
<ref id="ref53"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Oliver</surname> <given-names>A. E.</given-names></name> <name><surname>Newbold</surname> <given-names>L. K.</given-names></name> <name><surname>Whiteley</surname> <given-names>A. S.</given-names></name> <name><surname>van der Gast</surname> <given-names>C. J.</given-names></name></person-group> (<year>2014</year>). <article-title>Marine bacterial communities are resistant to elevated carbon dioxide levels</article-title>. <source>Environ. Microbiol. Rep.</source> <volume>6</volume>, <fpage>574</fpage>&#x2013;<lpage>582</lpage>. doi: <pub-id pub-id-type="doi">10.1111/1758-2229.12159</pub-id>, PMID: <pub-id pub-id-type="pmid">25756110</pub-id></citation></ref>
<ref id="ref54"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Orr</surname> <given-names>J. C.</given-names></name> <name><surname>Fabry</surname> <given-names>V. J.</given-names></name> <name><surname>Aumont</surname> <given-names>O.</given-names></name> <name><surname>Bopp</surname> <given-names>L.</given-names></name> <name><surname>Doney</surname> <given-names>S. C.</given-names></name> <name><surname>Feely</surname> <given-names>R. A.</given-names></name> <etal/></person-group>. (<year>2005</year>). <article-title>Anthropogenic Ocean acidification over the twenty-first century and its impact on calcifying organisms</article-title>. <source>Nature</source> <volume>437</volume>, <fpage>681</fpage>&#x2013;<lpage>686</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nature04095</pub-id>, PMID: <pub-id pub-id-type="pmid">16193043</pub-id></citation></ref>
<ref id="ref55"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Parks</surname> <given-names>D. H.</given-names></name> <name><surname>Tyson</surname> <given-names>G. W.</given-names></name> <name><surname>Hugenholtz</surname> <given-names>P.</given-names></name> <name><surname>Beiko</surname> <given-names>R. G.</given-names></name></person-group> (<year>2014</year>). <article-title>STAMP: statistical analysis of taxonomic and functional profiles</article-title>. <source>Bioinformatics</source> <volume>30</volume>, <fpage>3123</fpage>&#x2013;<lpage>3124</lpage>. doi: <pub-id pub-id-type="doi">10.1093/bioinformatics/btu494</pub-id>, PMID: <pub-id pub-id-type="pmid">25061070</pub-id></citation></ref>
<ref id="ref56"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Porra</surname> <given-names>R. J.</given-names></name></person-group> (<year>2002</year>). <article-title>The chequered history of the development and use of simultaneous equations for the accurate determination of chlorophylls a and b</article-title>. <source>Photosynthesis Res.</source> <volume>73</volume>, <fpage>149</fpage>&#x2013;<lpage>156</lpage>. doi: <pub-id pub-id-type="doi">10.1023/A:1020470224740</pub-id>, PMID: <pub-id pub-id-type="pmid">16245116</pub-id></citation></ref>
<ref id="ref57"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Quast</surname> <given-names>C.</given-names></name> <name><surname>Pruesse</surname> <given-names>E.</given-names></name> <name><surname>Yilmaz</surname> <given-names>P.</given-names></name> <name><surname>Gerken</surname> <given-names>J.</given-names></name> <name><surname>Schweer</surname> <given-names>T.</given-names></name> <name><surname>Yarza</surname> <given-names>P.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>The SILVA ribosomal RNA gene database project: improved data processing and web-based tools</article-title>. <source>Nucleic Acids Res.</source> <volume>41</volume>, <fpage>D590</fpage>&#x2013;<lpage>D596</lpage>. doi: <pub-id pub-id-type="doi">10.1093/nar/gks1219</pub-id>, PMID: <pub-id pub-id-type="pmid">23193283</pub-id></citation></ref>
<ref id="ref58"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Regnier</surname> <given-names>P.</given-names></name> <name><surname>Friedlingstein</surname> <given-names>P.</given-names></name> <name><surname>Ciais</surname> <given-names>P.</given-names></name> <name><surname>Mackenzie</surname> <given-names>F. T.</given-names></name> <name><surname>Gruber</surname> <given-names>N.</given-names></name> <name><surname>Janssens</surname> <given-names>I. A.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Anthropogenic perturbation of the carbon fluxes from land to ocean</article-title>. <source>Nat. Geosci.</source> <volume>6</volume>, <fpage>597</fpage>&#x2013;<lpage>607</lpage>. doi: <pub-id pub-id-type="doi">10.1038/ngeo1830</pub-id></citation></ref>
<ref id="ref59"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Robinson</surname> <given-names>C.</given-names></name> <name><surname>Ramaiah</surname> <given-names>N.</given-names></name></person-group> (<year>2011</year>). &#x201C;<article-title>Microbial heterotrophic metabolic rates constrain the microbial carbon pump</article-title>,&#x201D; in <source>Microbial Carbon Pump in the Ocean.</source> eds. <person-group person-group-type="editor"><name><surname>Jiao</surname> <given-names>N.</given-names></name> <name><surname>Azam</surname> <given-names>F.</given-names></name> <name><surname>Sanders</surname> <given-names>S.</given-names></name></person-group> (<publisher-loc>Washington</publisher-loc>: <publisher-name>The American Association for the Advancement of Science</publisher-name>), <fpage>52</fpage>&#x2013;<lpage>53</lpage>.</citation></ref>
<ref id="ref60"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Roy</surname> <given-names>A. S.</given-names></name> <name><surname>Gibbons</surname> <given-names>S. M.</given-names></name> <name><surname>Schunck</surname> <given-names>H.</given-names></name> <name><surname>Owens</surname> <given-names>S.</given-names></name> <name><surname>Caporaso</surname> <given-names>J. G.</given-names></name> <name><surname>Sperling</surname> <given-names>M.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Ocean acidification shows negligible impacts on high-latitude bacterial community structure in coastal pelagic mesocosms</article-title>. <source>Biogeosciences</source> <volume>10</volume>, <fpage>555</fpage>&#x2013;<lpage>566</lpage>. doi: <pub-id pub-id-type="doi">10.5194/bg-10-555-2013</pub-id></citation></ref>
<ref id="ref61"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sala</surname> <given-names>M. M.</given-names></name> <name><surname>Aparicio</surname> <given-names>F. L.</given-names></name></person-group> (<year>2016</year>). <article-title>Contrasting effects of ocean acidification on the microbial food web under different trophic conditions</article-title>. <source>ICES J. Mar. Sci.</source> <volume>73</volume>, <fpage>670</fpage>&#x2013;<lpage>679</lpage>. doi: <pub-id pub-id-type="doi">10.1093/icesjms/fsv130</pub-id></citation></ref>
<ref id="ref62"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shade</surname> <given-names>A.</given-names></name> <name><surname>Peter</surname> <given-names>H.</given-names></name> <name><surname>Allison</surname> <given-names>S. D.</given-names></name> <name><surname>Baho</surname> <given-names>D. L.</given-names></name> <name><surname>Berga</surname> <given-names>M.</given-names></name> <name><surname>Burgmann</surname> <given-names>H.</given-names></name> <etal/></person-group>. (<year>2012</year>). <article-title>Fundamentals of microbial community resistance and resilience</article-title>. <source>Front. Microbiol.</source> <volume>3</volume>:<fpage>417</fpage>. doi: <pub-id pub-id-type="doi">10.3389/fmicb.2012.00417</pub-id></citation></ref>
<ref id="ref63"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Thingstad</surname> <given-names>T. F.</given-names></name> <name><surname>Bellerby</surname> <given-names>R. G.</given-names></name> <name><surname>Bratbak</surname> <given-names>G.</given-names></name> <name><surname>Borsheim</surname> <given-names>K. Y.</given-names></name> <name><surname>Egge</surname> <given-names>J. K.</given-names></name> <name><surname>Heldal</surname> <given-names>M.</given-names></name> <etal/></person-group>. (<year>2008</year>). <article-title>Counterintuitive carbon-to-nutrient coupling in an Arctic pelagic ecosystem</article-title>. <source>Nature</source> <volume>455</volume>, <fpage>387</fpage>&#x2013;<lpage>390</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nature07235</pub-id>, PMID: <pub-id pub-id-type="pmid">18716617</pub-id></citation></ref>
<ref id="ref64"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wallace</surname> <given-names>R. B.</given-names></name> <name><surname>Baumann</surname> <given-names>H.</given-names></name> <name><surname>Grear</surname> <given-names>J. S.</given-names></name> <name><surname>Aller</surname> <given-names>R. C.</given-names></name> <name><surname>Gobler</surname> <given-names>C. J.</given-names></name></person-group> (<year>2014</year>). <article-title>Coastal Ocean acidification: The other eutrophication problem</article-title>. <source>Estuar. Coast. Shelf Sci.</source> <volume>148</volume>, <fpage>1</fpage>&#x2013;<lpage>13</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ecss.2014.05.027</pub-id></citation></ref>
<ref id="ref65"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>Y.</given-names></name> <name><surname>Wang</surname> <given-names>J.</given-names></name> <name><surname>Luo</surname> <given-names>T.</given-names></name> <name><surname>Zhang</surname> <given-names>R.</given-names></name> <name><surname>Sun</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title>Seasonal dynamics of bacterial communities in the surface seawater around subtropical Xiamen Island, China, as determined by 16S rRNA gene profiling</article-title>. <source>Mar. Pollut. Bull.</source> <volume>142</volume>, <fpage>135</fpage>&#x2013;<lpage>144</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.marpolbul.2019.03.035</pub-id>, PMID: <pub-id pub-id-type="pmid">31232286</pub-id></citation></ref>
<ref id="ref66"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Zhang</surname> <given-names>R.</given-names></name> <name><surname>Zheng</surname> <given-names>Q.</given-names></name> <name><surname>Deng</surname> <given-names>Y.</given-names></name> <name><surname>Nostrand</surname> <given-names>J. D. V.</given-names></name> <name><surname>Zhou</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis</article-title>. <source>ICES J. Mar. Sci.</source> <volume>73</volume>, <fpage>865</fpage>&#x2013;<lpage>875</lpage>. doi: <pub-id pub-id-type="doi">10.1093/icesjms/fsv187</pub-id></citation></ref>
<ref id="ref67"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>Z.</given-names></name> <name><surname>Tsementzi</surname> <given-names>D.</given-names></name> <name><surname>Williams</surname> <given-names>T. C.</given-names></name> <name><surname>Juarez</surname> <given-names>D. L.</given-names></name> <name><surname>Blinebry</surname> <given-names>S. K.</given-names></name> <name><surname>Garcia</surname> <given-names>N. S.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity</article-title>. <source>ISME J.</source> <volume>15</volume>, <fpage>19</fpage>&#x2013;<lpage>28</lpage>. doi: <pub-id pub-id-type="doi">10.1038/s41396-020-00748-2</pub-id>, PMID: <pub-id pub-id-type="pmid">32887943</pub-id></citation></ref>
<ref id="ref68"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xia</surname> <given-names>X.</given-names></name> <name><surname>Wang</surname> <given-names>Y.</given-names></name> <name><surname>Yang</surname> <given-names>Y.</given-names></name> <name><surname>Luo</surname> <given-names>T.</given-names></name> <name><surname>Van Nostrand</surname> <given-names>J. D.</given-names></name> <name><surname>Zhou</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2019</year>). <article-title>Ocean acidification regulates the activity, community structure and functional potential of heterotrophic bacterioplankton in an oligotrophic gyre</article-title>. <source>J. Geopgys. Res.</source> <volume>124</volume>, <fpage>1001</fpage>&#x2013;<lpage>1017</lpage>. doi: <pub-id pub-id-type="doi">10.1029/2018jg004707</pub-id></citation></ref>
<ref id="ref69"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>R.</given-names></name> <name><surname>Jiang</surname> <given-names>T.</given-names></name> <name><surname>Tian</surname> <given-names>Y.</given-names></name> <name><surname>Xie</surname> <given-names>S.</given-names></name> <name><surname>Zhou</surname> <given-names>L.</given-names></name> <name><surname>Li</surname> <given-names>Q.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Volcanic ash stimulates growth of marine autotrophic and heterotrophic microorganisms</article-title>. <source>Geology</source> <volume>45</volume>, <fpage>679</fpage>&#x2013;<lpage>682</lpage>. doi: <pub-id pub-id-type="doi">10.1130/G38833.1</pub-id></citation></ref>
<ref id="ref70"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>R.</given-names></name> <name><surname>Xia</surname> <given-names>X.</given-names></name> <name><surname>Lau</surname> <given-names>S. C. K.</given-names></name> <name><surname>Motegi</surname> <given-names>C.</given-names></name> <name><surname>Weinbauer</surname> <given-names>M. G.</given-names></name> <name><surname>Jiao</surname> <given-names>N.</given-names></name></person-group> (<year>2013</year>). <article-title>Response of bacterioplankton community structure to an artificial gradient of CO2 in the Arctic Ocean</article-title>. <source>Biogeosciences</source> <volume>10</volume>, <fpage>3679</fpage>&#x2013;<lpage>3689</lpage>. doi: <pub-id pub-id-type="doi">10.5194/bg-10-3679-2013</pub-id></citation></ref>
<ref id="ref71"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhu</surname> <given-names>W.</given-names></name> <name><surname>Wang</surname> <given-names>C.</given-names></name> <name><surname>Sun</surname> <given-names>F.</given-names></name> <name><surname>Zhao</surname> <given-names>L.</given-names></name> <name><surname>Dou</surname> <given-names>W.</given-names></name> <name><surname>Mao</surname> <given-names>Z.</given-names></name> <etal/></person-group>. (<year>2018</year>). <article-title>Overall bacterial community composition and abundance of nitrifiers and denitrifiers in a typical macrotidal estuary</article-title>. <source>Mar. Pollut. Bull.</source> <volume>126</volume>, <fpage>540</fpage>&#x2013;<lpage>548</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.marpolbul.2017.09.062</pub-id>, PMID: <pub-id pub-id-type="pmid">28978406</pub-id></citation></ref>
<ref id="ref72"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zinger</surname> <given-names>L.</given-names></name> <name><surname>Amaral-Zettler</surname> <given-names>L. A.</given-names></name> <name><surname>Fuhrman</surname> <given-names>J. A.</given-names></name> <name><surname>Horner-Devine</surname> <given-names>M. C.</given-names></name> <name><surname>Huse</surname> <given-names>S. M.</given-names></name> <name><surname>Welch</surname> <given-names>D. B.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems</article-title>. <source>PLoS One</source> <volume>6</volume>:<fpage>e24570</fpage>. doi: <pub-id pub-id-type="doi">10.1371/journal.pone.0024570</pub-id>, PMID: <pub-id pub-id-type="pmid">21931760</pub-id></citation></ref>
</ref-list>
<fn-group>
<fn id="fn0001"><p><sup>1</sup><ext-link xlink:href="http://sthjj.xm.gov.cn/zwgk/ghcw/hjzlgb/201501/t20150112_1033710.htm" ext-link-type="uri">http://sthjj.xm.gov.cn/zwgk/ghcw/hjzlgb/201501/t20150112_1033710.htm</ext-link></p></fn>
</fn-group>
</back>
</article>