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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2018.00148</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Mining Halophytes for Plant Growth-Promoting Halotolerant Bacteria to Enhance the Salinity Tolerance of Non-halophytic Crops</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Etesami</surname> <given-names>Hassan</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/428064/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Beattie</surname> <given-names>Gwyn A.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/101731/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Soil Science, Faculty of Agricultural Engineering &#x00026; Technology, University of Tehran</institution>, <addr-line>Tehran</addr-line>, <country>Iran</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Plant Pathology and Microbiology, Iowa State University</institution>, <addr-line>Ames, IA</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Frank Rasche, University of Hohenheim, Germany</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Moez Hanin, University of Sfax, Tunisia; Zakira Naureen, University of Nizwa, Oman</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Hassan Etesami <email>hassanetesami&#x00040;ut.ac.ir</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Terrestrial Microbiology, a section of the journal Frontiers in Microbiology</p></fn></author-notes>
<pub-date pub-type="epub">
<day>08</day>
<month>02</month>
<year>2018</year>
</pub-date>
<pub-date pub-type="collection">
<year>2018</year>
</pub-date>
<volume>9</volume>
<elocation-id>148</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>10</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>23</day>
<month>01</month>
<year>2018</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2018 Etesami and Beattie.</copyright-statement>
<copyright-year>2018</copyright-year>
<copyright-holder>Etesami and Beattie</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>Salinity stress is one of the major abiotic stresses limiting crop production in arid and semi-arid regions. Interest is increasing in the application of PGPRs (plant growth promoting rhizobacteria) to ameliorate stresses such as salinity stress in crop production. The identification of salt-tolerant, or halophilic, PGPRs has the potential to promote saline soil-based agriculture. Halophytes are a useful reservoir of halotolerant bacteria with plant growth-promoting capabilities. Here, we review recent studies on the use of halophilic PGPRs to stimulate plant growth and increase the tolerance of non-halophytic crops to salinity. These studies illustrate that halophilic PGPRs from the rhizosphere of halophytic species can be effective bio-inoculants for promoting the production of non-halophytic species in saline soils. These studies support the viability of bioinoculation with halophilic PGPRs as a strategy for the sustainable enhancement of non-halophytic crop growth. The potential of this strategy is discussed within the context of ensuring sustainable food production for a world with an increasing population and continuing climate change. We also explore future research needs for using halotolerant PGPRs under salinity stress.</p></abstract>
<kwd-group>
<kwd>salinity</kwd>
<kwd>salinity-sensitive crop</kwd>
<kwd>halophytes</kwd>
<kwd>salt-tolerant</kwd>
<kwd>halophilic PGPRs</kwd>
<kwd>saline soil-based agriculture</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="269"/>
<page-count count="20"/>
<word-count count="18143"/>
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</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Food security is a fundamental need of all societies. The global population is projected to increase to around 10 billion people within the next 50 years (Godfray et al., <xref ref-type="bibr" rid="B85">2010</xref>). To meet the additional food demand, an estimated 50% increase in yields of the major food crops will be required (Godfray et al., <xref ref-type="bibr" rid="B85">2010</xref>). Whereas, the world&#x00027;s population is increasing, agricultural soils are decreasing about 1&#x02013;2% every year in global arid and semi-arid zones due to soil salinity (Kafi and Khan, <xref ref-type="bibr" rid="B112">2008</xref>). The low rainfall and high temperature characteristic of these zones promote high salinity (Shrivastava and Kumar, <xref ref-type="bibr" rid="B217">2015</xref>), and this salinity has become an important factor limiting the growth of salt-sensitive plants and even some halophytes (Hasegawa et al., <xref ref-type="bibr" rid="B96">2000</xref>; Sobhanian et al., <xref ref-type="bibr" rid="B226">2011</xref>). Salinity stress has resulted in up to a 70% decrease in yield of important crops like wheat, maize, rice, and barley (Acquaah, <xref ref-type="bibr" rid="B3">2007</xref>). Moreover, salinity stress is predicted to increase further in many regions due to global climate change. The costs associated with this stress are potentially enormous, estimated at US$12 billion per annum globally, and rising (Qadir et al., <xref ref-type="bibr" rid="B180">2008</xref>; Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>).</p>
<p>A decrease in the availability of fertile land and the consequent extensive reuse of irrigated lands have driven the rapid development of saline soil-based agriculture in recent years (Zhu et al., <xref ref-type="bibr" rid="B267">2011</xref>). Whereas, plants that are salt-resistant can produce significant yields in saline soils, many agricultural crops, and trees exhibit a low tolerance to salt (Glenn et al., <xref ref-type="bibr" rid="B79">1991</xref>). Future agricultural production in these salt-affected agricultural environments thus requires the development of salt-tolerant food and fiber crops (Rozema and Flowers, <xref ref-type="bibr" rid="B191">2008</xref>; Joshi et al., <xref ref-type="bibr" rid="B111">2015</xref>). Traditional breeding and genetic engineering approaches have had only limited successes in developing salinity-resistant plants, despite significant efforts (Munns and Tester, <xref ref-type="bibr" rid="B153">2008</xref>; Schubert et al., <xref ref-type="bibr" rid="B207">2009</xref>; Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>; Joshi et al., <xref ref-type="bibr" rid="B111">2015</xref>; Krishna et al., <xref ref-type="bibr" rid="B127">2015</xref>). These efforts are complicated by the fact that salinity affects several facets of plant physiology (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>; Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>).</p>
<p>An alternative strategy to crop improvement to enhance salt tolerance may be to introduce salt-tolerant microbes that augment crop growth (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>). Soil salinity-tolerant microorganisms have been found to increase the growth of many crops grown in salt-affected soils, which suggests that this approach may succeed where developing salt-tolerant germplasm has not (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>). Identifying and using salinity-tolerant microorganisms could not only enhance the salt tolerance of crops but also reduce pressure on arable lands. Among the microorganisms associated with plants, plant growth-promoting rhizobacteria (PGPRs) have been effective at improving plant stress tolerance (Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>; Etesami, <xref ref-type="bibr" rid="B67">2018</xref>). Yang et al. (<xref ref-type="bibr" rid="B253">2009</xref>) coined the term &#x0201C;Induced Systemic Tolerance&#x0201D; to describe the tolerance to abiotic stresses that is elicited by PGPRs in plants. Previous reports have reviewed the effects of PGPRs in relieving abiotic stress in various crop plants (Dutta and Khurana, <xref ref-type="bibr" rid="B60">2015</xref>; Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>). The ability of PGPRs to transform nutrients and increase plant tolerance to abiotic stress is influenced by environmental conditions, including the climate, weather, and soil characteristics (e.g., high salinity), and by interactions with other microbial flora in the soil (Giongo et al., <xref ref-type="bibr" rid="B76">2008</xref>). For example, the performance of phosphorus-solubilizing microorganisms (PSMs) is strongly affected by environmental factors, especially stress factors (Yoon et al., <xref ref-type="bibr" rid="B255">2001</xref>; S&#x000E1;nchez-Porro et al., <xref ref-type="bibr" rid="B205">2009</xref>). Upadhyay et al. (<xref ref-type="bibr" rid="B239">2009</xref>) found that PGPRs lose plant growth-promoting (PGP) traits with increasing salinity <italic>in vitro</italic>. Thus, the use of halotolerant PGPRs that are selected based on both high salt tolerance and efficiency in expressing PGP traits could significantly advance our ability to grow crops in environments with natural or induced salinity (Zhu et al., <xref ref-type="bibr" rid="B267">2011</xref>). Rhizobacteria isolated from saline habitats have been shown to be more efficient at enhancing plant tolerance to salt than PGPRs isolated from non-saline habitats (Paul and Nair, <xref ref-type="bibr" rid="B172">2008</xref>; Egamberdieva and Kucharova, <xref ref-type="bibr" rid="B62">2009</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>). There is now clear evidence that PGPRs associated with plants growing in harsh environmental conditions help those plants tolerate abiotic stresses (Lucero et al., <xref ref-type="bibr" rid="B138">2008</xref>, <xref ref-type="bibr" rid="B139">2011</xref>; Rodriguez et al., <xref ref-type="bibr" rid="B188">2008</xref>; Lau and Lennon, <xref ref-type="bibr" rid="B131">2012</xref>; Marasco et al., <xref ref-type="bibr" rid="B146">2012</xref>; Kaplan et al., <xref ref-type="bibr" rid="B116">2013</xref>). Moreover, recent advances in plant&#x02013;bacterial interactions indicate that plants can shape the microbiome in the rhizosphere and endosphere (i.e., the zone within the roots; Berendsen et al., <xref ref-type="bibr" rid="B26">2012</xref>). Under stress conditions, plants can require the presence of associated bacteria to tolerate stress and therefore grow and become established in an ecosystem (Hardoim et al., <xref ref-type="bibr" rid="B94">2008</xref>). Symbiotic bacteria exist in all plants, and this relationship may be a key factor involved in plant stress tolerance. In fact, local adaptation of plants to their environment is driven by the genetic differentiation among closely associated PGPRs (Rodriguez and Redman, <xref ref-type="bibr" rid="B189">2008</xref>). Transplanting various plant species in the absence of bacteria is notoriously difficult (Leifert et al., <xref ref-type="bibr" rid="B133">1989</xref>), and this difficulty supports the importance of bacteria to plant growth, including under stressful conditions.</p>
<p>Halophytes are extremely salt tolerant plants&#x02014;they usually grow and survive in environments with salinity concentrations as high as 5 g l<sup>&#x02212;1</sup> (Joshi et al., <xref ref-type="bibr" rid="B111">2015</xref>). Halophytes play an important role in protecting ecosystems due to their remediation abilities. Halophytic plants have evolved various strategies to live in saline environments. These strategies include the production of compatible solutes to increase the osmotic pressure in the cytoplasm, the accumulation of Na<sup>&#x0002B;</sup> in the vacuole, and the exclusion of Na<sup>&#x0002B;</sup> from cells (Flowers and Colmer, <xref ref-type="bibr" rid="B71">2008</xref>). They also have evolved an ability to exploit the benefits provided by endophytes and rhizosphere microorganisms (Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref>; Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>).</p>
<p>The rhizosphere of halophytic plants serves as a reservoir for various groups of salt-tolerant rhizobacteria that could enhance the growth of crops under salinity stress (Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>, <xref ref-type="bibr" rid="B106">2015</xref>; Shukla et al., <xref ref-type="bibr" rid="B218">2012</xref>; Bharti et al., <xref ref-type="bibr" rid="B30">2013</xref>; Ramadoss et al., <xref ref-type="bibr" rid="B186">2013</xref>; Goswami et al., <xref ref-type="bibr" rid="B89">2014</xref>; Sharma et al., <xref ref-type="bibr" rid="B214">2016</xref>; Yuan et al., <xref ref-type="bibr" rid="B258">2016</xref>). Like halophytic plants, salt-tolerant rhizobacteria have evolved various strategies to live in high saline environments. An important strategy is the ability to accumulate compatible osmolytes to maintain intracellular osmotic balance (Nabti et al., <xref ref-type="bibr" rid="B155">2015</xref>; Sharma et al., <xref ref-type="bibr" rid="B214">2016</xref>). These bacteria exhibit multiple stress-related traits that may contribute to their plant protective capabilities under growth inhibiting levels of salt (Rohban et al., <xref ref-type="bibr" rid="B190">2009</xref>; Siddikee et al., <xref ref-type="bibr" rid="B220">2010</xref>; Bharti et al., <xref ref-type="bibr" rid="B30">2013</xref>; Sharma et al., <xref ref-type="bibr" rid="B214">2016</xref>). In this review, we present the attempts thus far to isolate halotolerant PGPRs that bestow salt tolerance to agricultural crops. We offer a view of the ability of PGPRs to increase plant tolerance to salt and facilitate plant growth, as well as their potential to be isolated from the rhizosphere of halophytes. Lastly, we highlight the future application of these PGPRs as bio-inoculants in saline soil-based agriculture. A key concept in this review is that the range of PGPRs with multiple PGP traits that exist in the rhizosphere of halophytic plants is a valuable resource for improving crop tolerance to salinity and promoting saline soil-based agriculture in the future.</p>
</sec>
<sec id="s2">
<title>Halophytes</title>
<p>Plants can grow at high levels of soil salinity although the extent of growth inhibition varies among plant species. Plants are classified into glycophytes (salt-sensitive plants) and halophytes (salt-loving plants) based on their tolerance to salinity. Halophytes are plants which naturally survive in salt-contaminated environments and can tolerate salinity concentrations as high as 1 M NaCl (Flowers and Colmer, <xref ref-type="bibr" rid="B71">2008</xref>; Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). About 1% of the total flora of the world (both dicots and monocots) are halophytic plants. These are distributed primarily in arid, semi-arid inlands, and high salinity wetlands along the tropical and sub-tropical coasts (Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). Halophytes have salt-responsive genes and proteins to counteract the adverse effects of salinity, while glycophytes cannot tolerate high salinity (Askari et al., <xref ref-type="bibr" rid="B19">2006</xref>; Yu et al., <xref ref-type="bibr" rid="B257">2011</xref>). Depending on their resistance and demand for sodium salts (NaCl), halophyte plants can be known as obligate or facultative halophytes (Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). Facultative halophytes can grow under freshwater conditions, whereas obligate halophytes need some salt to survive and grow (Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). Hydro-halophytes and xero-halophytes are another division for halophytes. Hydro-halophytes can grow in aquatic conditions or on wet soil, and xero-halphytes can grow in habitats where the soil is always saline and dry (Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). Most herbal varieties in desert areas are xero-halophytes and many of them are succulent (Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). Because halophytes flourish in high salinity conditions, they are considered to be extremophiles (Kosov&#x000E1; et al., <xref ref-type="bibr" rid="B126">2013</xref>).</p>
<p>Halophytes employ several mechanisms to adjust to soil salinity (Shabala, <xref ref-type="bibr" rid="B209">2013</xref>; Zhang and Shi, <xref ref-type="bibr" rid="B263">2013</xref>; Flowers and Colmer, <xref ref-type="bibr" rid="B72">2015</xref>; Joshi et al., <xref ref-type="bibr" rid="B111">2015</xref>; Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>). These mechanisms include complex molecular, biochemical, physiological, and morphological changes (Wang et al., <xref ref-type="bibr" rid="B250">2001</xref>) such as (i) modulating plant hormones (Parida and Das, <xref ref-type="bibr" rid="B171">2005</xref>; Gupta and Huang, <xref ref-type="bibr" rid="B92">2014</xref>) like IAA, jasmonic acid (JA), gibberellin (GA), ethylene (ET), and abscisic acid (ABA), and inducing enzymes related to their biosynthesis; (ii) synthesizing compatible solutes and osmoprotectants (Sanchez et al., <xref ref-type="bibr" rid="B204">2008</xref>; Flowers and Colmer, <xref ref-type="bibr" rid="B72">2015</xref>; Slama et al., <xref ref-type="bibr" rid="B225">2015</xref>); (iii) controlling ion absorption, especially potassium (K) ions, by roots and ion transfer to leaves. Owing to their role in maintaining an osmotic balance, K<sup>&#x0002B;</sup> ions play an important role in closing and opening stomata and as co-factors for many enzymes; (iv) selective accumulation or removal of ions (Mahajan and Tuteja, <xref ref-type="bibr" rid="B142">2005</xref>); (v) producing nitric oxide (NO) (Del R&#x000ED;o, <xref ref-type="bibr" rid="B54">2015</xref>); (vi) activating antioxidant enzymes and producing antioxidant compounds (Ozgur et al., <xref ref-type="bibr" rid="B168">2013</xref>; Wang et al., <xref ref-type="bibr" rid="B249">2013</xref>); (vii) producing polyamines (Takahashi and Kakehi, <xref ref-type="bibr" rid="B231">2009</xref>); (viii) altering photosynthetic pathways (Stepien and Johnson, <xref ref-type="bibr" rid="B229">2009</xref>; Uzilday et al., <xref ref-type="bibr" rid="B241">2014</xref>); (ix) compartmentalizing ions at the cellular and whole-plant levels (Pang et al., <xref ref-type="bibr" rid="B170">2010</xref>; Shabala and Mackay, <xref ref-type="bibr" rid="B210">2011</xref>); and (x) regulating the expression of genes involved in plant salinity tolerance. In terms of gene regulation, halophytic plants respond to salt stress by up-regulating a large number of genes and transcription factors (Kawasaki et al., <xref ref-type="bibr" rid="B120">2001</xref>; Lim et al., <xref ref-type="bibr" rid="B136">2010</xref>; Gupta and Huang, <xref ref-type="bibr" rid="B92">2014</xref>; Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>), and these can be grouped into the following functional categories: (i) senescence-associated genes (e.g., <italic>SAG</italic>); (ii) ion transport or homeostasis genes (e.g., <italic>SOS</italic> genes, <italic>AtNHX1</italic>, and H<sup>&#x0002B;</sup>-ATPase); (iii) molecular chaperones (e.g., <italic>HSP</italic> genes); and (iv) dehydration-related transcription factors (e.g., <italic>DREB</italic>) (Gupta and Huang, <xref ref-type="bibr" rid="B92">2014</xref>).</p>
<p>Interest in salinity tolerant and halophytic plants is because of a trend toward increasing salinity in agricultural soils in the arid and semi-arid regions of the world. The potential use of halophytes and other salt-tolerant species would allow the production of crops in these areas. Halophytes have many potential uses (Figure <xref ref-type="fig" rid="F1">1</xref>; Gago et al., <xref ref-type="bibr" rid="B74">2011</xref>; Manousaki and Kalogerakis, <xref ref-type="bibr" rid="B144">2011</xref>; Ksouri et al., <xref ref-type="bibr" rid="B128">2012</xref>; Rozema and Schat, <xref ref-type="bibr" rid="B192">2013</xref>; Hasanuzzaman et al., <xref ref-type="bibr" rid="B95">2014</xref>; Song and Wang, <xref ref-type="bibr" rid="B227">2014</xref>; Cheeseman, <xref ref-type="bibr" rid="B42">2015</xref>; Jesus et al., <xref ref-type="bibr" rid="B104">2015</xref>; Akinshina et al., <xref ref-type="bibr" rid="B7">2016</xref>; Himabindu et al., <xref ref-type="bibr" rid="B97">2016</xref>), including their use as a reservoir for isolating halotolerant PGPRs.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Some potential use of halophytes.</p></caption>
<graphic xlink:href="fmicb-09-00148-g0001.tif"/>
</fig>
</sec>
<sec id="s3">
<title>Halotolerant PGPRs</title>
<p>Eukaryotic and prokaryotic micro-organisms, including fungi, bacteria, and archaea, are able to adapt to a range of changes in external osmolarity (Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>). Halotolerant bacteria are able to grow in environments with a wide range of salinities, from 1 to 33% NaCl, as well as in the absence of NaCl (Larsen, <xref ref-type="bibr" rid="B130">1986</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>). They are therefore well-suited to grow in the rhizosphere of halophytes where there are often low water potentials due to salt stress in dry climates (Upadhyay et al., <xref ref-type="bibr" rid="B239">2009</xref>; Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>). Interestingly, PGPRs isolated from environmental extremes maintain their PGP traits even in the presence of high salt concentrations. For example, Zhu et al. (<xref ref-type="bibr" rid="B267">2011</xref>) isolated a high phosphorus-solubilizing halotolerant PGPR, <italic>Kushneria</italic> sp. YCWA18, from the sediment of Daqiao saltern on the eastern coast of China that was able to grow on a solid medium containing 20% (w/v) of sodium chloride. Tiwari et al. (<xref ref-type="bibr" rid="B234">2011</xref>) also isolated PGPRs that were halotolerant based on their ability to tolerate 2&#x02013;25% NaCl; these included <italic>Bacillus pumilus, Pseudomonas mendocina, Arthrobacter</italic> sp., <italic>Halomonas</italic> sp., and <italic>Nitrinicola lacisaponensis</italic> with plant growth-promoting traits like phosphorus (P) solubilization and the ability to produce IAA, siderophores, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase. These are considered PGP traits due to their ability to provide P to the plant under P-limiting conditions, promote plant growth by functioning as a phytohormone (IAA), provide Fe to the plant via chelation and uptake (siderophores), and deplete a precursor to the plant stress hormone ethylene (ACC deaminase). Distinct genera of halotolerant bacteria have been isolated from distinct halophytic plants such as <italic>Rosa rugosa</italic> (Bibi et al., <xref ref-type="bibr" rid="B35">2011</xref>), <italic>Salicornia bigelovii</italic> (Rueda-Puente et al., <xref ref-type="bibr" rid="B194">2010</xref>), <italic>Salicornia brachiate</italic> (Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>), <italic>Halocnemum strobilaceum</italic> (Al-Mailem et al., <xref ref-type="bibr" rid="B10">2010</xref>), <italic>Acacia</italic> spp. (Boukhatem et al., <xref ref-type="bibr" rid="B38">2012</xref>), <italic>Sesuvium portulacastrum</italic> (Bian et al., <xref ref-type="bibr" rid="B32">2011</xref>; Anburaj et al., <xref ref-type="bibr" rid="B11">2012</xref>), and <italic>Avicennia marina</italic> (El-Tarabily and Youssef, <xref ref-type="bibr" rid="B65">2010</xref>), and from a wide range of habitats such as extreme alkali-saline soils, desert soils, and saline soils (Ant&#x000F3;n et al., <xref ref-type="bibr" rid="B12">2002</xref>; Ventosa et al., <xref ref-type="bibr" rid="B245">2008</xref>; Abou-Elela et al., <xref ref-type="bibr" rid="B2">2010</xref>; Shi et al., <xref ref-type="bibr" rid="B216">2012</xref>; Zhou et al., <xref ref-type="bibr" rid="B265">2012</xref>; Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>). Many of these halotolerant bacteria exhibited an ability to promote plant growth (Table <xref ref-type="table" rid="T1">1</xref>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Potential application of PGPRs, with multiple plant growth promoting (PGP) traits, associated to halophytes to promote growth and enhance salinity tolerance of non-halophyte and halophyte plants.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Halotolerant bacteria</bold></th>
<th valign="top" align="left"><bold>Host halophyte</bold></th>
<th valign="top" align="left"><bold>PGP activity</bold></th>
<th valign="top" align="left"><bold>Inoculated plant</bold></th>
<th valign="top" align="left"><bold>Plant response</bold></th>
<th valign="top" align="left"><bold>References</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>Bacillus alcalophilus, B. thuringiensis</italic>, and <italic>Gracilibacillus saliphilus</italic></td>
<td valign="top" align="left"><italic>Arthrocnemum macrostachyum</italic></td>
<td valign="top" align="left">IAA production, siderophore production, and phosphate solubilization</td>
<td valign="top" align="left"><italic>A. macrostachyum</italic></td>
<td valign="top" align="left">Mitigated the effects of high salinity on plant growth and physiological performance.</td>
<td valign="top" align="left">Navarro-Torre et al., <xref ref-type="bibr" rid="B159">2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Micrococcus yunnanensis, Planococcus rifietoensis</italic>, and <italic>Variovorax paradoxus</italic></td>
<td valign="top" align="left">Seven species of halophytes</td>
<td valign="top" align="left">N<sub>2</sub> fixation, IAA production, siderophore production, phosphate solubilization, and ACC deaminase activity</td>
<td valign="top" align="left">Sugar beet <italic>(Beta vulgaris</italic> L.<italic>)</italic></td>
<td valign="top" align="left">An increase in salt stress tolerance, seed germination (%), and plant biomass, and photosynthetic capacity, and a decrease in stress-induced ethylene production at different NaCl concentrations (50&#x02013;125 mM).</td>
<td valign="top" align="left">Zhou et al., <xref ref-type="bibr" rid="B266">2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Dietzia natronolimnaea STR1</italic></td>
<td valign="top" align="left">Not reported</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Wheat (<italic>Triticum aestivum</italic> L.)</td>
<td valign="top" align="left">Increased wheat tolerance to salt stress by improved wheat growth in terms of plant dry weight and plant height (higher biomass, shoot, and root elongation), increased photosynthetic pigments, enhanced content of enzymes catalase and ascorbate peroxidase, and increased the gene expression of the antioxidants compared to un-inoculated plants.</td>
<td valign="top" align="left">Bharti et al., <xref ref-type="bibr" rid="B29">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Bacillus, Pantoea, Marinobacterium, Acinetobacter, Enterobacter, Pseudomonas, Rhizobium</italic>, and <italic>Sinorhizobium</italic></td>
<td valign="top" align="left"><italic>Psoralea corylifolia</italic> L.</td>
<td valign="top" align="left">IAA production and siderophore production</td>
<td valign="top" align="left">Wheat (<italic>Triticum aestivum</italic> L.)</td>
<td valign="top" align="left">Enhanced seed germination and root length of wheat</td>
<td valign="top" align="left">Sorty et al., <xref ref-type="bibr" rid="B228">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Klebsiella, Pseudomonas, Agrobacterium</italic>, and <italic>Ochrobactrum</italic></td>
<td valign="top" align="left"><italic>Arthrocnemum indicum</italic></td>
<td valign="top" align="left">IAA production, N<sub>2</sub> fixation, phosphate solubilization, ACC deaminase activity, and HCN production</td>
<td valign="top" align="left">Peanut</td>
<td valign="top" align="left">A significant increase in total N content (up to 76%), maintained ion homeostasis, accumulated less ROS, and enhanced plant growth compared to non-inoculated seedlings.</td>
<td valign="top" align="left">Sharma et al., <xref ref-type="bibr" rid="B214">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Serratia marcescens</italic> and <italic>B. cereus</italic></td>
<td valign="top" align="left"><italic>Aster tripolium</italic> L.</td>
<td valign="top" align="left">IAA production, N<sub>2</sub> fixation, siderophore production, and ACC deaminase activity</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Szyma&#x00144;ska, et al., <xref ref-type="bibr" rid="B230">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pseudomonas</italic> sp.</td>
<td valign="top" align="left"><italic>Suaeda salsa</italic></td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Cucumber and rice</td>
<td valign="top" align="left">Increase in plant growth and salt tolerance of plant.</td>
<td valign="top" align="left">Yuan et al., <xref ref-type="bibr" rid="B258">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Bacillus endophyticus, B. tequilensis, Planococcus rifietoensis, Variovorax paradoxus</italic>, and <italic>Arthrobacter agilis</italic></td>
<td valign="top" align="left"><italic>Salicornia europaea</italic></td>
<td valign="top" align="left">IAA production, phosphate solubilization, and ACC deaminase activity</td>
<td valign="top" align="left"><italic>S. europaea</italic></td>
<td valign="top" align="left">Increase in germination percentage by 7&#x02013;11%, in shoot length by 13&#x02013;22%, in plant root length by 44&#x02013;57%, and in fresh weight by 21&#x02013;54%.</td>
<td valign="top" align="left">Zhao et al., <xref ref-type="bibr" rid="B264">2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Arthrobacter pascens</italic></td>
<td valign="top" align="left"><italic>Atriplex leucoclada</italic></td>
<td valign="top" align="left">Phosphate solubilization and siderophore production</td>
<td valign="top" align="left">Maize</td>
<td valign="top" align="left">Increase in shoot and root length, in shoot and root fresh and dry weight, in osmolytes (e.g., sugar and proline), and in antioxidant enzymes activity (e.g., superoxide dismutase, peroxidase, catalase and ascorbate peroxidase) of maize plant.</td>
<td valign="top" align="left">Ullah and Bano, <xref ref-type="bibr" rid="B236">2015</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="left"><italic>Suaeda fruticosa</italic></td>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Bacillus, Pseudomonas, Klebsiella, Serratia, Arthrobacter, Streptomyces, Isoptericola</italic>, and <italic>Microbacterium</italic></td>
<td valign="top" align="left"><italic>Limonium sinense</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation, IAA production, phosphate solubilization, and ACC deaminase activity</td>
<td valign="top" align="left"><italic>L. sinense</italic></td>
<td valign="top" align="left">Significant increase in plant root length, shoot length, leaf number, and leaf area as compared to the non-inoculated control.</td>
<td valign="top" align="left">Qin et al., <xref ref-type="bibr" rid="B181">2014</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Chromohalobacter, Marinococcus, Halobacillus, Nesterenkonia, Halomonas, Oceanobacillus</italic>, and <italic>Virgibacillus</italic></td>
<td valign="top" align="left"><italic>Salicornia strobilacea</italic></td>
<td valign="top" align="left">IAA, N<sub>2</sub> fixation, phosphate solubilization, and ACC deaminase activity</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Mapelli et al., <xref ref-type="bibr" rid="B145">2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Rhodococcus fascians</italic></td>
<td valign="top" align="left"><italic>Salicornia</italic> sp.</td>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Jafari et al., <xref ref-type="bibr" rid="B102">2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Brachybacterium saurashtrense</italic> sp., <italic>Zhihengliuella</italic> sp., <italic>Brevibacterium casei, Haererehalobacter</italic> sp., <italic>Halomonas</italic> sp., <italic>Vibrio</italic> sp., <italic>Cronobacter sakazakii, Pseudomonas</italic> spp., <italic>Rhizobium radiobacter, Mesorhizobium</italic> sp., and <italic>Bacillus</italic> sp.</td>
<td valign="top" align="left"><italic>Salicornia brachiata</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation, IAA production, phosphate solubilization, and ACC deaminase activity</td>
<td valign="top" align="left"><italic>S. brachiata</italic></td>
<td valign="top" align="left">Increase in percent germination at 0&#x02013;0.5 mol l<sup>&#x02212;1</sup> NaCl concentrations and significant increases in root length, shoot length, vigor index and the fresh weight of <italic>S. brachiate</italic>.</td>
<td valign="top" align="left">Jha et al., <xref ref-type="bibr" rid="B105">2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Agrobacterium tumefaciens, Zhinguelliuella, Brachybacterium saurashtrense, Brevibacterium casei, Haererohalobacter</italic>, and <italic>Vibrio</italic></td>
<td valign="top" align="left"><italic>Salicornia brachiata</italic></td>
<td valign="top" align="left">IAA production, N<sub>2</sub> fixation, phosphate solubilization, siderophore production, and ACC deaminase activity</td>
<td valign="top" align="left"><italic>Arachis hypogaea</italic></td>
<td valign="top" align="left">Increase in plant length, shoot length, root length, shoot dry weight, root dry weight, and total biomass compared to un-inoculated plants, increase in the percentage of water content in the shoots and roots in inoculated plants compared to un-inoculated plants, and increase in amino acids, K<sup>&#x0002B;</sup>/Na<sup>&#x0002B;</sup> ratio, and content of Ca<sup>2&#x0002B;</sup>, P, N, and IAA of the inoculated plants.</td>
<td valign="top" align="left">Shukla et al., <xref ref-type="bibr" rid="B218">2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Brachybacterium saurashtrense</italic> sp.</td>
<td valign="top" align="left"><italic>Salicornia brachiata</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation, IAA production, siderophore production, and ACC deaminase activity</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Gontia et al., <xref ref-type="bibr" rid="B88">2011</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Rhizobium</italic> spp. and <italic>Bacillus</italic> spp.</td>
<td valign="top" align="left"><italic>Salicornia bigelovii</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Rueda-Puente et al., <xref ref-type="bibr" rid="B194">2010</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Brevibacterium epidermidis, B. iodinum, Arthrobacter nicotianae, Zhihengliuella alba, Micrococcus yunnanensis, Oceanimonas smirnovii, Bacillus licheniformis, B. stratosphericus, B. aryabhattai</italic>, and <italic>Corynebacterium variabile</italic></td>
<td valign="top" align="left">Not reported</td>
<td valign="top" align="left">N<sub>2</sub> fixation, IAA production, and ACC deaminase activity</td>
<td valign="top" align="left">Canola</td>
<td valign="top" align="left">Increase in root length between 5.2 and 47.8%, and in root dry weight between 16.2 and 43%, in comparison with the un-inoculated canola plant.</td>
<td valign="top" align="left">Siddikee et al., <xref ref-type="bibr" rid="B220">2010</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pseudomonas oryzihabitans, Pseudomonas</italic> sp., <italic>Pantoea agglomerans</italic> and <italic>Pseudomonas putida</italic></td>
<td valign="top" align="left"><italic>Suaeda salsa</italic></td>
<td valign="top" align="left">IAA production, gibberellic acid production, abscisic acid production, phosphate solubilization, ACC deaminase activity, siderophore production, and antifungal activity</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Teng et al., <xref ref-type="bibr" rid="B232">2010</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Lysinibacillus fusiformis, B. subtilis, Brevibacterium halotolerans, B. licheniformis, B. pumilus, Achromobacter xylosoxidans</italic>, and <italic>P. putida</italic></td>
<td valign="top" align="left"><italic>Prosopis strombulifera</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation, IAA production, siderophore production, ACC deaminase activity, gibberellin production, antifungal activity, and protease activity</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pseudomonas pseudoalcaligenes</italic></td>
<td valign="top" align="left"><italic>Salicornia europea</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left"><italic>S. europea</italic></td>
<td valign="top" align="left">Increase in the chlorophyll content and N content of <italic>S. europea</italic>.</td>
<td valign="top" align="left">Ozawa et al., <xref ref-type="bibr" rid="B167">2007</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Halomonas maura</italic></td>
<td valign="top" align="left"><italic>Salicornia</italic> sp.</td>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Argandona et al., <xref ref-type="bibr" rid="B13">2005</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Klebsiella pneumoniae</italic></td>
<td valign="top" align="left"><italic>Salicornia bigelovii</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left"><italic>S. bigelovii</italic></td>
<td valign="top" align="left">Increase in germination, early seedling growth, fresh and dry weights and the length of roots of <italic>S. bigelovii</italic>.</td>
<td valign="top" align="left">Rueda-Puente et al., <xref ref-type="bibr" rid="B193">2003</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Azospirillum halopraeferens</italic> sp. Nov.</td>
<td valign="top" align="left"><italic>Kallar grass</italic></td>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">&#x02013;</td>
<td valign="top" align="left">Reinhold et al., <xref ref-type="bibr" rid="B187">1987</xref></td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Halotolerant bacteria employ a range of strategies to grow and survive in saline habitats (Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>). These strategies include (i) minimizing the uptake of salt due to compositional properties of the cell membrane or cell wall; (ii) regulating intracellular ion concentrations by pumping ions out of the cell through electrogenic Na<sup>&#x0002B;</sup>/H<sup>&#x0002B;</sup> antiporters and K<sup>&#x0002B;</sup>/Na<sup>&#x0002B;</sup> ion transporters for osmotic adjustment; (iii) accumulating compatible solutes such as sucrose, trehalose, glycosyl glycerol, and glycine betaine by endogenous biosynthesis; (iv) producing proteins and enzymes that are adapted to high concentrations of solute ions; (v) increasing the energetic capacity; and (vi) producing exopolysaccharides (EPS) that help the development of hydrating biofilms (Sandhya et al., <xref ref-type="bibr" rid="B206">2010</xref>; Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). In addition to these strategies, fundamental cellular properties of halophytes may enhance their halotolerance, including their high GC content and a high proportion of proteins that exhibit a low hydrophobicity, a low tendency to form helices, and a high tendency to form stabilizing coil structures (Jacob, <xref ref-type="bibr" rid="B101">2012</xref>; Szyma&#x00144;ska, et al., <xref ref-type="bibr" rid="B230">2016</xref>).</p>
<p>Several reports have shown that halotolerant PGPRs effectively improve growth of various agricultural crops under salinity stress conditions (Figure <xref ref-type="fig" rid="F2">2</xref>; Mayak et al., <xref ref-type="bibr" rid="B149">2004a</xref>; Nabti et al., <xref ref-type="bibr" rid="B154">2010</xref>; Shukla et al., <xref ref-type="bibr" rid="B218">2012</xref>; Goswami et al., <xref ref-type="bibr" rid="B89">2014</xref>; Ji et al., <xref ref-type="bibr" rid="B108">2014</xref>; Kim et al., <xref ref-type="bibr" rid="B123">2014</xref>; Kaushal and Wani, <xref ref-type="bibr" rid="B119">2016</xref>; Orhan, <xref ref-type="bibr" rid="B166">2016</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>; Singh and Jha, <xref ref-type="bibr" rid="B222">2016</xref>; Etesami, <xref ref-type="bibr" rid="B67">2018</xref>). Mechanisms by which they improve growth have been predicted or shown to include (i) activating plant antioxidant defense machinery by upregulating the activity of key enzymes such as superoxide dismutase (SOD), peroxidase, and catalase (CAT) that scavenge excess reactive oxygen species (ROS), and protect the plants from salt toxicity (Jha and Subramanian, <xref ref-type="bibr" rid="B107">2014</xref>; Islam et al., <xref ref-type="bibr" rid="B100">2016</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>); (ii) improving plant nutrition by fixing atmospheric nitrogen (N<sub>2</sub>), solubilizing P or K, producing siderophores for Fe uptake (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>; Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>; Etesami, <xref ref-type="bibr" rid="B67">2018</xref>); (iii) increasing the efficiency of inoculated plants to take up select ions for maintaining a high K<sup>&#x0002B;</sup>/Na<sup>&#x0002B;</sup> ratio; this can directly reduce the accumulation of toxic ions such as Na<sup>&#x0002B;</sup> and Cl<sup>&#x02212;</sup> and improve the nutritional status of both macronutrients and micronutrients by regulating ion transporter expression and/or activity (Giri et al., <xref ref-type="bibr" rid="B78">2007</xref>; Zuccarini and Okurowska, <xref ref-type="bibr" rid="B269">2008</xref>; Shukla et al., <xref ref-type="bibr" rid="B218">2012</xref>; Islam et al., <xref ref-type="bibr" rid="B100">2016</xref>; Etesami, <xref ref-type="bibr" rid="B67">2018</xref>); (iv) decreasing plant Na<sup>&#x0002B;</sup> accumulation by excreting EPS to bind cations (especially Na<sup>&#x0002B;</sup>) in roots and prevent their translocation to leaves; this helps promote a physical barrier called a rhizosheath around the roots (Ashraf et al., <xref ref-type="bibr" rid="B18">2004</xref>; Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>; Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>). EPS-producing-halotolerant PGPRs enhance the soil structure by promoting soil aggregation, which results in water retention and increased provision of nutrients to plants. EPS can also alleviate plant salt stress by binding Na<sup>&#x0002B;</sup>; this binding is due to the hydroxyl, sulfhydryl, carboxyl and phosphoryl functional groups characteristic of bacterial EPS (Watanabe et al., <xref ref-type="bibr" rid="B251">2003</xref>; Nunkaew et al., <xref ref-type="bibr" rid="B163">2015</xref>). <italic>Aeromonas hydrophila/caviae, Bacillus</italic> sp., <italic>Planococcus rifietoensis, Halomonas variabilis, Burkholderia, Enterobacter, Microbacterium</italic>, and <italic>Paenibacillus</italic> are some of the halotolerant PGPRs that produce EPS and facilitate biofilm formation (Upadhyay et al., <xref ref-type="bibr" rid="B240">2011</xref>; Qurashi and Sabri, <xref ref-type="bibr" rid="B183">2012</xref>; Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>); (v) synthesizing the enzyme ACC deaminase, which converts the plant ethylene precursor ACC to ammonia and &#x003B1;-ketobutyrate (Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>), thus reducing the accumulation of ethylene in the plant and avoiding ethylene-mediated growth inhibition in response to abiotic stresses such as salinity (Etesami et al., <xref ref-type="bibr" rid="B70">2014</xref>; Glick, <xref ref-type="bibr" rid="B82">2014</xref>; Singh et al., <xref ref-type="bibr" rid="B223">2015</xref>); (vi) changing root architecture and morphology, hydraulic conductance, and hormone status (Arora et al., <xref ref-type="bibr" rid="B15">2006</xref>, <xref ref-type="bibr" rid="B16">2012</xref>). These root changes, which may result from increased IAA, can facilitate the uptake of more nutrients and provide access to a more extensive network of soil water (Vacheron et al., <xref ref-type="bibr" rid="B242">2013</xref>; Goswami et al., <xref ref-type="bibr" rid="B89">2014</xref>); (vii) emitting stress-related volatile compounds that enhance plant biomass and survival under severe drought stress (Timmusk et al., <xref ref-type="bibr" rid="B233">2014</xref>); (viii) accumulating osmolytes such as amino acids and their derivatives (e.g., glutamate, proline, peptides, and N-acetylated amino acids), quaternary amines (e.g., glycine betaine and carnitine), and sugars (e.g., sucrose and trehalose) (Creus et al., <xref ref-type="bibr" rid="B49">2004</xref>); (ix) preserving higher stomatal conductance and photosynthetic activities (del Amor and Cuadra-Crespo, <xref ref-type="bibr" rid="B52">2012</xref>), which can reduce the accumulation of toxic ions (Na<sup>&#x0002B;</sup> and Cl<sup>&#x02212;</sup>) and improve the ratio of K<sup>&#x0002B;</sup>: Na<sup>&#x0002B;</sup> in the leaf (P&#x000E9;rez-Alfocea et al., <xref ref-type="bibr" rid="B174">2010</xref>); (x) inducing the expression of stress-responsive genes. In particular, halotolerant PGPRs cause up-regulation of stress tolerance genes (Kaushal and Wani, <xref ref-type="bibr" rid="B119">2016</xref>; Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>) such as <italic>RAB18</italic> (LEA), the <italic>RD29A</italic> and <italic>RD29B</italic> regulons of ABA-responsive elements (<italic>ABRE</italic>), and dehydration responsive elements (<italic>DRE</italic>), as well as the transcription factor DREB2b DRE binding protein. They also can induce genes that encode proteins related to energy metabolism and cell division, particularly amino acid metabolism and the tricarboxylic acid cycle (Banaei-Asl et al., <xref ref-type="bibr" rid="B20">2015</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). The halotolerant PGPRs <italic>Azospirillum brasilense, Pantoea agglomerans</italic>, and <italic>Bacillus megaterium</italic> can help plants decrease their cellular water potential by increasing the expression of genes <italic>PIP2, ZmPIP1-1</italic>, and <italic>HvPIP2-1</italic>, which are involved in producing aquaporins. Aquaporins are water channel proteins in the plasma membranes of plant cells that contribute to the transfer of water into the plant (Marulanda et al., <xref ref-type="bibr" rid="B148">2010</xref>; Zawoznik et al., <xref ref-type="bibr" rid="B261">2011</xref>; Gond et al., <xref ref-type="bibr" rid="B87">2015</xref>; Moshelion et al., <xref ref-type="bibr" rid="B151">2015</xref>). PGPRs induction of aquaporins may encourage plants to continue to take up water from salt-affected soils (Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). Furthermore, the PGPR <italic>B. subtilis</italic> can also decrease the absorption of excessive amounts of Na<sup>&#x0002B;</sup> by the roots of plants by down-regulating expression of the high-affinity K<sup>&#x0002B;</sup> transporter (HKT1) in the roots of salinity-affected plants (Zhang et al., <xref ref-type="bibr" rid="B262">2008</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). In addition, these halotolerant PGPRs facilitate shoot-to-root Na<sup>&#x0002B;</sup> recirculation by triggering the induction of HKT1 in shoots (Zhang et al., <xref ref-type="bibr" rid="B262">2008</xref>); and (xi) protecting plants from phytopathogens, such as by producing extracellular enzymes to hydrolyze fungal cell walls, synthesizing antimicrobial compounds, producing Fe-chelating siderophores to starve phytopathogens for Fe, excluding pathogens via competition for nutrients and sites on root, and inducing systemic resistance (Glick and Bashan, <xref ref-type="bibr" rid="B83">1997</xref>; Bhattacharyya and Jha, <xref ref-type="bibr" rid="B31">2012</xref>; Etesami, <xref ref-type="bibr" rid="B67">2018</xref>).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>(A)</bold> Schematic overview of the mechanisms developed by halotolerant plant growth promoting rhizobacteria (PGPRs) to live and survive in highly salinity conditions. For more details, see this reference (Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>). <bold>(B)</bold>, Beneficial attributes of halotolerant PGPRs toward salinity stress tolerance in non-halophyte crops grown in saline soils. Red arrows indicate rhizobacterial components negating salinity stress effects. Halotolerant PGPRs increase the K<sup>&#x0002B;</sup>/Na<sup>&#x0002B;</sup> ratio by selectively enhancing K<sup>&#x0002B;</sup> uptake and avoiding translocation of toxic Na<sup>&#x0002B;</sup> under saline conditions. These bacteria are capable of increasing the antioxidative systems in plants for reactive oxygen species (ROS) scavenging such as enzymatic components of superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), peroxidase (POD), and glutathione reductase (GR) and non-enzymatic components of cysteine, glutathione and ascorbicacid. 1-aminocyclopropane-1-carboxylate (ACC)-deaminase producing PGPRs decrease the excessive ethylene production in plants caused by salinity stress and thereby eliminate the negative effect of ethylene on roots. Production of phytohormones increases the overall growth and also alters root characteristics (i.e., alteration of root proliferation, metabolism and respiration rate) to facilitate uptake of water and nutrients. Phytohormone indole-3-acetic acid (IAA) also increases the size of aerial parts of the plants. Production of osmoprotectants (i.e., proline, polyamines, glutamate, total free amino acids, etc.) by PGPR also contributes to salinity stress tolerance in PGPRs-inoculated plants. Exopolysaccharides (EPS) bind the toxic Na<sup>&#x0002B;</sup> and restrict Na<sup>&#x0002B;</sup> influx into roots. Soil aggregation due to production of EPS or alteration of root exudates (RE) hydrates the rhizosphere and helps in enhancing uptake of water and nutrients. EPS also increase root adhering-soil (RAS). Volatile organic compounds (VOCs) can trigger induction of high affinity K<sup>&#x0002B;</sup> transporter (HKT1) in shoots and reduction of HKT1 in roots, limiting Na<sup>&#x0002B;</sup> entry into roots and facilitating shoot-to-root Na<sup>&#x0002B;</sup> recirculation. For more details, see these references (Dutta and Khurana, <xref ref-type="bibr" rid="B60">2015</xref>; Kaushal and Wani, <xref ref-type="bibr" rid="B119">2016</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>; S&#x000E1;enz-Mata et al., <xref ref-type="bibr" rid="B200">2016</xref>).</p></caption>
<graphic xlink:href="fmicb-09-00148-g0002.tif"/>
</fig>
<p>Inoculating crops with halotolerant PGPRs isolated from halophytes has been successful at improving crop growth and tolerance under salt stress conditions (Shukla et al., <xref ref-type="bibr" rid="B218">2012</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>). Halotolerant PGPRs can provide many benefits to plants, including helping halophytes and glycophytes overcome salt stress (Table <xref ref-type="table" rid="T1">1</xref>). For example, salt- tolerant PGPRs isolated from rhizospheric soil of the halophytes <italic>Haloxylon salicornicum, Lespedeza bicolor, Atriplex leucoclada, Suaeda fruticosa</italic>, and <italic>Salicornica virginica</italic> also enhanced the growth of salinity-stressed maize (Ullah and Bano, <xref ref-type="bibr" rid="B236">2015</xref>). These plants exhibited an accumulation of osmolytes (e.g., sugar and proline) and increase in antioxidant enzyme activity (e.g., SOD, peroxidase, CAT, and ascorbate peroxidase) as compared to un-inoculated plants. Similarly, a study by Siddikee et al. (<xref ref-type="bibr" rid="B220">2010</xref>) showed that, following the inoculation of canola seedlings with halotolerant bacterial isolates isolated from halophytic plants under salt stress in gnotobiotic conditions, the plants exhibited significantly increased growth, as shown by a 35&#x02013;43% increase in dry weight and 29&#x02013;47% increase in root length. The studies shown in Table <xref ref-type="table" rid="T1">1</xref> illustrate that PGPRs isolated from the rhizosphere of halophytic species can be used as effective bio-inoculants for non-halophytic crops grown under salt stress.</p>
<sec>
<title>Halophytes and ACC deaminase-producing PGPRs</title>
<p>Ethylene is a plant growth regulator and stress hormone (Mayak et al., <xref ref-type="bibr" rid="B150">2004b</xref>; Pierik et al., <xref ref-type="bibr" rid="B176">2007</xref>) that is produced by almost all plant species. This gaseous growth hormone has a key role in causing physiological changes in plants at the molecular level. The production of ethylene is significantly enhanced in response to environmental stresses such as drought and salinity. Excessive ethylene inhibits root growth and, as a consequence, limits further growth of the plant. High ethylene levels in nodules is also associated with decreased N<sub>2</sub> fixation (Ma et al., <xref ref-type="bibr" rid="B140">2002</xref>). Although ethylene production near roots is constantly modulated during plant growth and development (Mayak et al., <xref ref-type="bibr" rid="B149">2004a</xref>; Mahajan and Tuteja, <xref ref-type="bibr" rid="B142">2005</xref>; Gamalero and Glick, <xref ref-type="bibr" rid="B75">2015</xref>), reducing stress-induced ethylene levels alleviates some effects of stress on plants (Glick, <xref ref-type="bibr" rid="B80">2004</xref>; Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>).</p>
<p>As described earlier, PGPRs that secrete the enzyme ACC deaminase can reduce ethylene levels by metabolizing ACC, a precursor of plant-produced ethylene, into &#x003B1;-ketobutyrate and ammonia (Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>). Plants inoculated with ACC deaminase-producing PGPRs often exhibit extended root growth, attributed to reductions in ethylene, and enhanced resistance to salinity stress (Mayak et al., <xref ref-type="bibr" rid="B149">2004a</xref>,<xref ref-type="bibr" rid="B150">b</xref>; Cheng et al., <xref ref-type="bibr" rid="B44">2007</xref>; Glick et al., <xref ref-type="bibr" rid="B84">2007</xref>; Zahir et al., <xref ref-type="bibr" rid="B259">2009</xref>; Nadeem et al., <xref ref-type="bibr" rid="B156">2010</xref>; Barnawal et al., <xref ref-type="bibr" rid="B23">2012</xref>; Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>; Etesami and Beattie, <xref ref-type="bibr" rid="B69">2017</xref>). These PGPRs can also influence plant ethylene homeostasis by altering the expression of genes encoding the ethylene synthesis enzymes ACC synthase and ACC oxidase (Tsukanova et al., <xref ref-type="bibr" rid="B235">2017</xref>).</p>
<p>Although salinity has been associated with the loss in ACC deaminase production by some PGPRs (Upadhyay et al., <xref ref-type="bibr" rid="B239">2009</xref>), at least some salt-tolerant PGPRs isolated from saline environments appear to maintain ACC deaminase production based on documentation of their beneficial properties in helping plants overcome salinity stress by reducing ethylene levels (Mayak et al., <xref ref-type="bibr" rid="B149">2004a</xref>). For example, 25 out of 140 halotolerant bacterial isolates from coastal soils of the South Korean Yellow Sea showed ACC deaminase activity (Siddikee et al., <xref ref-type="bibr" rid="B220">2010</xref>); these bacterial isolates belonged to the genera of <italic>Arthrobacter, Bacillus, Brevibacterium, Corynebacterium, Exiguobacterium, Halomonas, Micrococcus, Oceanimonas, Planococcus</italic>, and <italic>Zhihengliuella</italic>. ACC deaminase-producing PGPRs isolated from saline environments alleviated salinity stress in a variety of plants. For example, the ACC deaminase-producing PGPR strains <italic>P. fluorescens</italic> N3 and <italic>P. putida</italic> Q7 promoted the growth of maize roots by 3.3-fold, and maize shoots by 2.3-fold, respectively, under salinity stress as compared to un-inoculated controls (Kausar and Shahzad, <xref ref-type="bibr" rid="B118">2006</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>). Similarly, inoculation of legume plants with ACC deaminase-producing rhizobia isolated from saline soils promoted nodule formation (Shaharoona et al., <xref ref-type="bibr" rid="B211">2006</xref>), and inoculation of wheat plants with the PGPR strain <italic>A. brasilense</italic> FP2 from saline soils resulted in a decrease in the expression of the plant ACC oxidase (Camilios-Neto et al., <xref ref-type="bibr" rid="B41">2014</xref>).</p>
<p>In addition to halotolerant bacteria isolated from saline environments, halotolerant bacteria isolated from various halophytic species exhibit ACC deaminase production (Table <xref ref-type="table" rid="T1">1</xref>; Siddikee et al., <xref ref-type="bibr" rid="B220">2010</xref>; Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>; Zhou et al., <xref ref-type="bibr" rid="B266">2017</xref>). ACC deaminase-producing PGPRs isolated from halophytes have been found to alleviate salinity stress and increase plant growth for both halophytes and salinity-sensitive crop plants (Table <xref ref-type="table" rid="T1">1</xref>). For example, novel diazotrophic halotolerant bacteria isolated from the roots of <italic>Salicornia brachiata</italic> featured ACC deaminase activity and these isolates included <italic>Brachybacterium saurashtrense, Brevibacteriumcasei, Cronobacter sakazakii, Haererehalobacter, Halomonas, Mesorhizobium, Pseudomonas, Rhizobium radiobacter, Vibrio</italic>, and <italic>Zhihengliuella</italic> (Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>). Moreover, growth parameters of <italic>S. brachiate</italic> increased significantly under salt stress after re-inoculation with <italic>B. saurashtrense</italic> and <italic>Pseudomonas</italic> (Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>). In another study (El-Tarabily and Youssef, <xref ref-type="bibr" rid="B65">2010</xref>), one out of 62 bacterial isolates from the <italic>A. marina</italic> rhizosphere exhibited a high level of ACC deaminase activity. Following inoculation of this isolate, identified as <italic>P. maricaloris</italic>, plant seedlings exhibited a decrease in the endogenous levels of ACC and improved growth undersalinity stress. Following the inoculation of red pepper plants with the ACC deaminase-producing halotolerant PGPRs <italic>Brevibacterium iodinum, Zhihengliuela alba</italic>, and <italic>Bacillus licheniformis</italic> isolated from halophytes, ethylene levels in the plants decreased by 44, 53, and 57%, respectively. Furthermore, their salt tolerance, as assessed using a salt tolerance index, increased significantly compared to non-inoculated plants (Siddikee et al., <xref ref-type="bibr" rid="B219">2011</xref>). These studies illustrate that habitat-adapted ACC deaminase-producing PGPRs associated with halophytes can mitigate the effects of salinity stress on crops and reduce ethylene to below growth-inhibitory levels (Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>).</p>
<p>Considerable attention has been given to the isolation of ACC deaminase-producing salt-tolerant PGPRs for their use in promoting plant growth in saline environments (Hardoim et al., <xref ref-type="bibr" rid="B94">2008</xref>; Nadeem et al., <xref ref-type="bibr" rid="B156">2010</xref>; Ali et al., <xref ref-type="bibr" rid="B9">2014</xref>). Methods of isolating such PGPRs are well-established (Penrose and Glick, <xref ref-type="bibr" rid="B173">2003</xref>). A rapid and efficient approach to their isolation is using polymerase chain reaction (PCR)-based screening for the ACC deaminase-encoding gene <italic>acdS</italic> coupled to a colorimetric ninhydrin assay to measure ACC (Nikolic et al., <xref ref-type="bibr" rid="B162">2011</xref>; Jasim et al., <xref ref-type="bibr" rid="B103">2015</xref>; Li et al., <xref ref-type="bibr" rid="B135">2015b</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). Interestingly, recent results suggest that endophytic bacteria are more able to produce the enzyme ACC deaminase than PGPRs isolated from other habitats, including the surfaces of leaves and roots and from non-rhizosphere soil (Bruto et al., <xref ref-type="bibr" rid="B40">2014</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). Future research that compares the bio-activity of ACC deaminase-producing bacteria isolated from various habitats, including distinct tissues of halophytic plants, would be useful.</p>
</sec>
<sec>
<title>Halophytes and phytohormone-producing PGPRs</title>
<p>Phytohormones regulate the protective response of plants to biotic and abiotic stresses (Raghavan et al., <xref ref-type="bibr" rid="B185">2006</xref>), and also the development and tolerance to diverse environmental stresses including salinity stress (Ryu and Cho, <xref ref-type="bibr" rid="B196">2015</xref>). Plant responses to salt stress include an array of changes at the molecular, biochemical, and physiological levels (Manchanda and Garg, <xref ref-type="bibr" rid="B143">2008</xref>; Ahmad et al., <xref ref-type="bibr" rid="B4">2013</xref>; Kumari et al., <xref ref-type="bibr" rid="B129">2015</xref>), and depend upon environmental conditions, soil properties, and plant growth stage (Zhu et al., <xref ref-type="bibr" rid="B268">1992</xref>). Previous studies (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>) indicate that salinity can either diminish (300 mM NaCl) (Dunlap and Binzel, <xref ref-type="bibr" rid="B59">1996</xref>) or increase (100 mM NaCl) (Albacete et al., <xref ref-type="bibr" rid="B8">2008</xref>) endogenous IAA levels in roots. Plants can also respond to exogenous phytohormones, and these can relieve the adverse effects of salinity (Singh and Jain, <xref ref-type="bibr" rid="B221">1982</xref>; Zahir et al., <xref ref-type="bibr" rid="B260">2010</xref>). Thus, exogenous application of phytohormones and their precursors provides an attractive approach to counter salt stress conditions by changing the balance of endogenous levels of hormones (Ilangumaran and Smith, <xref ref-type="bibr" rid="B99">2017</xref>). This was illustrated in a study showing that treating wheat seeds with IAA reduced the detrimental effects of salinity stress on wheat growth (Datta et al., <xref ref-type="bibr" rid="B50">1997</xref>). In addition to stimulating root proliferation, which can enhance growth and salt tolerance (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>), IAA can help maintain leaf growth, which helps prevent salinity-induced limitations in plant productivity (Munns, <xref ref-type="bibr" rid="B152">2002</xref>; Albacete et al., <xref ref-type="bibr" rid="B8">2008</xref>). IAA has also been reported to enhance the protection of bacterial cells against abiotic stresses such as high salt concentrations (Bianco et al., <xref ref-type="bibr" rid="B34">2006</xref>).</p>
<p>PGPRs may enhance plant growth, in part, by modulating the plant hormonal balance (Ilangumaran and Smith, <xref ref-type="bibr" rid="B99">2017</xref>; Tsukanova et al., <xref ref-type="bibr" rid="B235">2017</xref>). IAA production is a relatively common trait of most salt-tolerant PGPRs (Dodd et al., <xref ref-type="bibr" rid="B58">2010</xref>), and IAA-producing PGPRs can increase the fitness of plants grown in salt-affected soils (Tiwari et al., <xref ref-type="bibr" rid="B234">2011</xref>). PGPRs may improve crop salt tolerance by altering hormonal root&#x02013;shoot signaling (Yang et al., <xref ref-type="bibr" rid="B253">2009</xref>). The ability to modify plant stress levels by providing IAA, which influences the development of lateral roots, has previously been reported for halotolerant-bacteria isolated from coastal soils (Siddikee et al., <xref ref-type="bibr" rid="B220">2010</xref>), halophyte roots in Argentina (Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref>), highly saline habitats (Tiwari et al., <xref ref-type="bibr" rid="B234">2011</xref>), the halophyte <italic>Prosopis strombulifera</italic> (Piccoli et al., <xref ref-type="bibr" rid="B175">2011</xref>), the rhizosphere of halophytic weeds from the Pakistani Khewra salt range (Naz et al., <xref ref-type="bibr" rid="B160">2009</xref>), halotolerant plants from a Chinese coastal sandbank (Bian et al., <xref ref-type="bibr" rid="B32">2011</xref>), and the rhizosphere of <italic>C. annum</italic> growing in desert areas (Marasco et al., <xref ref-type="bibr" rid="B146">2012</xref>). Some IAA-producing salt-tolerant PGPRs isolated from halophytes are shown in Table <xref ref-type="table" rid="T1">1</xref>, as is their potential as a tool for promoting the salt tolerance of halophytes and glycophytes. For example, Tiwari et al. (<xref ref-type="bibr" rid="B234">2011</xref>) demonstrated that inoculation of wheat with IAA-producing salt-tolerant <italic>Halomonas</italic> sp. resulted in a higher IAA content in the rhizosphere of treated plants than control plants and increased plant growth. In another study, the IAA-overproducing strain <italic>Sinorhizobium meliloti</italic> ameliorated the reduced growth of <italic>Medicago truncatula</italic> in saline soils (Bianco and Defez, <xref ref-type="bibr" rid="B33">2009</xref>). This work was further supported by Egamberdieva (<xref ref-type="bibr" rid="B61">2009</xref>). These studies clearly show that managing IAA production in halophytic and non-halophytic plants by endophytic and rhizosphere bacteria may be an important tool in conferring salt tolerance.</p>
<p>Cytokinins (CKs) are also involved in the development of plant resistance to biotic and abiotic stresses (Gro&#x000DF;kinsky et al., <xref ref-type="bibr" rid="B90">2011</xref>; O&#x00027;Brien and Benkov&#x000E1;, <xref ref-type="bibr" rid="B164">2013</xref>). CK production is a relatively common trait of PGPRs (Dodd et al., <xref ref-type="bibr" rid="B58">2010</xref>). PGPRs can influence plant CK concentration by synthesizing CK or altering CK homeostasis in the plant (Arshad and Frankenberger, <xref ref-type="bibr" rid="B17">1991</xref>; de Garcia Salamone et al., <xref ref-type="bibr" rid="B51">2005</xref>; Glick, <xref ref-type="bibr" rid="B81">2012</xref>; Pallai et al., <xref ref-type="bibr" rid="B169">2012</xref>; Kapoor and Kaur, <xref ref-type="bibr" rid="B117">2016</xref>). The <italic>Platycladus orientalis</italic> plants inoculated with a CK-producing PGPR strain <italic>B. subtilis</italic> had increased CK levels in the shoots and were more resistant to drought (Liu et al., <xref ref-type="bibr" rid="B137">2013</xref>). Increased growth of drought-stressed lettuce plants inoculated with a CK-producing <italic>B. subtilis</italic> strain suggested modulation of root-to-shoot CK signaling (Arkhipova et al., <xref ref-type="bibr" rid="B14">2007</xref>). The ability of PGPRs to synthesize CK or alter plant CK homeostasis highlights the importance of understanding how PGPRs stimulate growth and increase plant resistance to salinity.</p>
<p>Gibberellic acid (GA) positively regulates cell division and elongation, hypocotyl and stem growth, and leaf and root meristem size (Guo et al., <xref ref-type="bibr" rid="B91">2015</xref>; Wang et al., <xref ref-type="bibr" rid="B248">2015</xref>; Mart&#x000ED;nez et al., <xref ref-type="bibr" rid="B147">2016</xref>). GA signaling is a key factor in the inhibition of plant growth under stress (Magome and Kamiya, <xref ref-type="bibr" rid="B141">2016</xref>; Mart&#x000ED;nez et al., <xref ref-type="bibr" rid="B147">2016</xref>). PGPRs can influence the endogenous GA levels in plants (Bottini et al., <xref ref-type="bibr" rid="B37">2004</xref>; Kang et al., <xref ref-type="bibr" rid="B114">2014a</xref>; Shahzad et al., <xref ref-type="bibr" rid="B212">2016</xref>). Some PGPR strains, such as <italic>B. amyloliquefaciens</italic> RWL-1, <italic>Promicromonospora</italic> sp. SE188, <italic>Leifsonia soli</italic> SE134, and <italic>Enterococcus faecium</italic> LKE12, can synthesize GA (Bottini et al., <xref ref-type="bibr" rid="B37">2004</xref>; Kang et al., <xref ref-type="bibr" rid="B113">2012</xref>, <xref ref-type="bibr" rid="B114">2014a</xref>; Lee et al., <xref ref-type="bibr" rid="B132">2015</xref>; Shahzad et al., <xref ref-type="bibr" rid="B212">2016</xref>). After inoculation of plants with the GA-producing PGPR strains, <italic>B. cereus</italic> MJ-1 (Joo et al., <xref ref-type="bibr" rid="B110">2005</xref>) and <italic>Promicromonospora</italic> sp. SE188, the amount of endogenous GA in the shoots increased (Kang et al., <xref ref-type="bibr" rid="B114">2014a</xref>). Some bacterial isolates from the halophyte <italic>P. strombulifera</italic> (Piccoli et al., <xref ref-type="bibr" rid="B175">2011</xref>) and the rhizosphere of halophytic weeds from the Pakistani Khewra salt range showed the ability to produce GA (Naz et al., <xref ref-type="bibr" rid="B160">2009</xref>), as did the PGPR strains <italic>B. licheniformis, Lysinibacillus fusiformis, Achromobacter xylosoxidans</italic>, and <italic>Brevibacterium halotolerans</italic> isolated from the halophyte <italic>P. strombulifera</italic> (Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref>).</p>
<p>Abscisic acid (ABA) is an important plant stress hormone that is synthesized in response to abiotic stresses and activates the genes responsible for stress resistance (Sah et al., <xref ref-type="bibr" rid="B201">2016</xref>). This hormone plays an important role in alleviating salinity stress by mediating stomatal, and thereby photosynthetic, responses to high salinity (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>). It also plays a crucial role in plant-PGPR interactions (Dodd, <xref ref-type="bibr" rid="B56">2003</xref>). Many PGPRs produce ABA <italic>in vitro</italic> (Dodd et al., <xref ref-type="bibr" rid="B58">2010</xref>); these include <italic>A. brasilense, B. licheniformis, Novosphingobium</italic> sp., <italic>P. fluorescens, Rhodococcus</italic> sp. P1Y, and <italic>Variovorax paradoxus</italic> (Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref>; Jiang et al., <xref ref-type="bibr" rid="B109">2012</xref>; Belimov et al., <xref ref-type="bibr" rid="B25">2014</xref>; Salomon et al., <xref ref-type="bibr" rid="B203">2014</xref>; Cohen et al., <xref ref-type="bibr" rid="B46">2015</xref>). PGPRs can also produce ABA under salinity stress conditions and increase growth of salinized plants (Naz et al., <xref ref-type="bibr" rid="B160">2009</xref>). For example, in a study, following inoculation of plants with ABA-producing strains such as <italic>B. licheniformis</italic> Rt4M10, <italic>P. fluorescens</italic> Rt6M10, <italic>A. brasilense</italic> Sp 245, the internal ABA content increased and inoculated plants become more resistant to drought compared to un-inoculated plants (Salomon et al., <xref ref-type="bibr" rid="B203">2014</xref>; Cohen et al., <xref ref-type="bibr" rid="B46">2015</xref>). In addition, inoculation with ABA-producing PGPRs often decreased the accumulation and concentration of ABA in roots and significantly altered the long-distance signaling of shoot-to-root ABA transport in the phloem and the root-to-shoot ABA transport in the xylem (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>; Jiang et al., <xref ref-type="bibr" rid="B109">2012</xref>; Belimov et al., <xref ref-type="bibr" rid="B25">2014</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>); the resulting changes in ABA levels may mitigate the plant&#x00027;s sensitivity to water scarcity. Recently, the two rhizospheric bacteria <italic>Rhodococcus</italic> sp. and <italic>Novosphingobium</italic> sp. were found to metabolize ABA <italic>in vitro</italic> (Belimov et al., <xref ref-type="bibr" rid="B25">2014</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>), suggesting a mechanism for decreasing plant ABA concentrations. Interestingly, disrupting plant ABA homeostasis can influence the activity of halotolerant PGPRs, as shown by wild-type tomato plants that exhibited enhanced growth, and ABA-deficient mutant plants that exhibited reduced growth, in response to <italic>B. megaterium</italic> inoculation (Porcel et al., <xref ref-type="bibr" rid="B179">2014</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>). Collectively, these results suggest that ABA-producing halotolerant PGPRs, ABA-metabolizing halotolerant PGPRs, and general halotolerant PGPRs will act differently in adjusting plant ABA status and thus may result in variable plant responses to salinity stress. ABA production has also been reported in bacterial isolates from halophytes, including from the rhizosphere of halophytic weeds from the salt range of Pakistani Khewra (Naz et al., <xref ref-type="bibr" rid="B160">2009</xref>) and the halophyte <italic>P. strombulifera</italic> (Piccoli et al., <xref ref-type="bibr" rid="B175">2011</xref>). <italic>L. fusiformis, B. subtilis, B. halotolerans, B. licheniformis, B. pumilus, A. xylosoxidans</italic>, and <italic>Pseudomonas putida</italic> are some ABA-producing bacteria isolated from the halophyte <italic>P. strombulifera</italic> (Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref>). Relatively little is known of the role of ABA in plant-bacterial interactions. The ability of PGPRs to alter ABA levels in plants suggest opportunities to use these bacteria to influence plant growth and abiotic stress resistance, and highlights a need for more research to understand how PGPRs influence plant ABA signal transduction components.</p>
<p>Jasmonic acid (JA) is also involved in abiotic stress resistance (Ahmad et al., <xref ref-type="bibr" rid="B5">2016</xref>). Several endophytic PGPRs synthesize JA and salicylic acid (SA) (Forchetti et al., <xref ref-type="bibr" rid="B73">2007</xref>; Chen et al., <xref ref-type="bibr" rid="B43">2014</xref>). Inoculating plants with the PGPR strains <italic>P. fluorescens</italic> Pf4, <italic>P. aeruginosa</italic> Pag (Singh et al., <xref ref-type="bibr" rid="B224">2003</xref>), and <italic>B. amyloliquefaciens</italic> LJ02 (Li et al., <xref ref-type="bibr" rid="B134">2015a</xref>) resulted in a rise in the endogenous levels of SA in various plant tissues. Inoculation of <italic>Vitis vinifera</italic> with the PGPR strain <italic>Burkholderia phytofirmans</italic> PsJN also led to SA accumulation (Bordiec et al., <xref ref-type="bibr" rid="B36">2010</xref>), as did inoculation with the GA-producing PGPR strains <italic>Promicromonospora</italic> sp. SE188 (Kang et al., <xref ref-type="bibr" rid="B113">2012</xref>) and <italic>B. amyloliquefaciens</italic> RWL-1 (Shahzad et al., <xref ref-type="bibr" rid="B212">2016</xref>).</p>
<p>Although there is some evidence that PGPRs improved plant salt tolerance by altering the endogenous hormone status (Kang et al., <xref ref-type="bibr" rid="B115">2014b</xref>; Sahoo et al., <xref ref-type="bibr" rid="B202">2014</xref>; Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>; Ilangumaran and Smith, <xref ref-type="bibr" rid="B99">2017</xref>), little is known about how PGPRs influence this process. We have a similar knowledge deficit regarding the potential for halotolerant PGPRs to synthesize many of these phytohormones and to produce them <italic>in vitro</italic> or <italic>in planta</italic>. Bacterial isolates from halophytes have thus far been screened primarily for IAA synthesis, among the hormones discussed. However, the roles of GA, ABA, CK, SA, and JA in the physiology of plant halotolerance indicates that future research on how bacterial isolates from halophytes influence phytohormone homeostasis in plants may be fruitful.</p>
</sec>
<sec>
<title>Halophytes and phosphate-solubilizing PGPRs</title>
<p>Phosphorus is one of the major essential macronutrients for plants. Although organic and inorganic P are abundant in soils, P availability is limited due to its presence in insoluble forms. Whereas, P comprises about 0.05% (w/w) of soils, often only 0.1% of the total P is available to plants because of poor solubility and its fixation in soil (Goldstein, <xref ref-type="bibr" rid="B86">1986</xref>). In both saline soil-based and fertile soil-based agriculture, intensive cultivation strongly depletes soil nutrients. The use of inorganic NPK fertilizers increases soil salinity, particularly when coupled with saline irrigation. Phosphate-solubilizing halotolerant PGPRs provide an opportunity to enhance P availability to plants without exacerbating soil salinity levels. Phosphate-solubilizing PGPRs can solubilize insoluble phosphates via various mechanisms like chelation, ion exchange, and acidification by secreting low molecular weight organic acids (Sharma et al., <xref ref-type="bibr" rid="B213">2013</xref>; Etesami, <xref ref-type="bibr" rid="B67">2018</xref>). In salt-affected soils, inoculation with phosphate-solubilizing halotolerant PGPRs improved plant growth and suppressed the adverse effects of salt (Giri et al., <xref ref-type="bibr" rid="B77">2004</xref>). Following the inoculation of <italic>Solanum lycopersicum</italic> plants with <italic>Achromobacter piechaudii</italic>, plant P content and water use efficiency increased under salinity stress (Mayak et al., <xref ref-type="bibr" rid="B149">2004a</xref>). Similarly, inoculation of wheat with <italic>B. aquimaris</italic> increased plant P content under salinity stress in the field (Upadhyay and Singh, <xref ref-type="bibr" rid="B238">2015</xref>). Both studies suggest that phosphate-solubilizing PGPRs solubilize insoluble P in saline soils. Halotolerant bacteria isolated from halophytes also exhibit P solubilization activity (Table <xref ref-type="table" rid="T1">1</xref>). A screen of the mangrove <italic>A. marina</italic> rhizosphere identified 129 bacterial strains with the ability to solubilize rock phosphate, with <italic>Oceanobacillus picturae</italic> able to mobilize 97% of this mineral (El-Tarabily and Youssef, <xref ref-type="bibr" rid="B65">2010</xref>). Bacteria isolated from halophytes, including <italic>Arthrobacter, Bacillus, Azospirillum, Vibrio, Phyllobacterium</italic>, and <italic>O. picturae</italic>, were shown to solubilize Ca<sub>3</sub>(PO4)<sub>2</sub>, AlPO<sub>4</sub>, and FePO<sub>4</sub> (Bashan et al., <xref ref-type="bibr" rid="B24">2000</xref>; Banerjee et al., <xref ref-type="bibr" rid="B21">2010</xref>; El-Tarabily and Youssef, <xref ref-type="bibr" rid="B65">2010</xref>; Yasmin and Bano, <xref ref-type="bibr" rid="B254">2011</xref>) and increase the P content in both halophytes and glycophytes under salinity stress (Table <xref ref-type="table" rid="T1">1</xref>). When the halophytes <italic>S. bigelovii</italic> and <italic>S. bigelovii</italic> were inoculated with various halotolerant PGPRs, including <italic>Azospirillum, Vibrio, Bacillus</italic>, and <italic>Phyllobacterium</italic>, the P content of the foliage increased (Bashan et al., <xref ref-type="bibr" rid="B24">2000</xref>). This increased P content in plant tissues may help ameliorate the growth-restraining effects of salinity.</p>
</sec>
<sec>
<title>Halophytes and siderophore-producing PGPRs</title>
<p>Iron is a micronutrient that is a component of many enzymes involved in biochemical processes, including respiration, photosynthesis, and N<sub>2</sub> fixation (Kobayashi and Nishizawa, <xref ref-type="bibr" rid="B125">2012</xref>; Abbas et al., <xref ref-type="bibr" rid="B1">2015</xref>). Iron availability is very low in calcareous and saline sodic soils throughout the world (Rabhi et al., <xref ref-type="bibr" rid="B184">2007</xref>; Abbas et al., <xref ref-type="bibr" rid="B1">2015</xref>). These soils suppress the availability of most micronutrients, including iron, and suppress plant growth by concurrent salinity and iron deficiency stresses (Yousfi et al., <xref ref-type="bibr" rid="B256">2007</xref>; Abbas et al., <xref ref-type="bibr" rid="B1">2015</xref>). PGPRs often secrete siderophores, which are small, high-affinity Fe(III)-chelating compounds that scavenge iron, and the iron&#x02013;siderophore complexes can be easily accessed by plants (Kloepper et al., <xref ref-type="bibr" rid="B124">1980</xref>). Siderophore production by halotolerant PGPRs isolated from halophytes has been reported (Table <xref ref-type="table" rid="T1">1</xref>); however, the ability of these strains to increase the availability of iron and other micro-elements, such as Zn, Mn, and Cu, to plants is not yet known.</p>
</sec>
<sec>
<title>Halophytes and N<sub>2</sub>-fixing PGPRs</title>
<p>Most agricultural systems depend on the application of exogenous nitrogen, as it is often the nutrient that most limits productivity (Vitousek and Howarth, <xref ref-type="bibr" rid="B246">1991</xref>). The productivity of halophytic crop species can also be limited by a lack of available N in saline soils. For legumes, nitrogen fixation is more sensitive than plant growth to soil salinity (Djekoun and Planchon, <xref ref-type="bibr" rid="B55">1991</xref>), and all stages in nodule formation and nodule function are negatively affected by salinity (de la Pe&#x000F1;a and Pueyo, <xref ref-type="bibr" rid="B53">2012</xref>; Bruning and Rozema, <xref ref-type="bibr" rid="B39">2013</xref>). Salinity can interfere with plant N nutrition and thus decrease the N content of plant tissues (Naidoo, <xref ref-type="bibr" rid="B157">1987</xref>), as illustrated by salinity-mediated repression of ammonium and nitrate uptake and assimilation (Ullrich, <xref ref-type="bibr" rid="B237">2002</xref>). Typically, farmers use chemical fertilizers to compensate for a lack of soil N; however, the excessive use of inorganic fertilizers may increase salinity, severely degrade the soil structure, and change the composition of the soil microflora (Akhavan-Kharazian et al., <xref ref-type="bibr" rid="B6">1991</xref>; Rueda-Puente et al., <xref ref-type="bibr" rid="B193">2003</xref>). Salinity also results in low soil microbial activity due to osmotic stress and ion toxicity. Increases in soil salinity in many parts of the world are therefore limiting plant productivity and the benefits accrued from biological N<sub>2</sub> fixation (Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>). Salt-tolerant N<sub>2</sub>-fixing PGPRs can tolerate osmotic stress by producing osmolytes that allow them to maintain their cell turgor and metabolism (Yan et al., <xref ref-type="bibr" rid="B252">2015</xref>). N<sub>2</sub> fixation by salt-tolerant bacteria associated with the roots of halophytes is an important source of available N in saline soils. Furthermore, these roots are a source of halotolerant N<sub>2</sub>-fixing bacteria with plant growth-promoting potential (Table <xref ref-type="table" rid="T1">1</xref>; Rueda-Puente et al., <xref ref-type="bibr" rid="B193">2003</xref>; Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>; Sharma et al., <xref ref-type="bibr" rid="B214">2016</xref>), some of which have been found to increase the growth of halophytes as well as non-halophytic crops in saline soils (Table <xref ref-type="table" rid="T1">1</xref>). The potential benefits of biological N<sub>2</sub>-fixers to halophytes and salt-sensitive crops (Rueda-Puente et al., <xref ref-type="bibr" rid="B193">2003</xref>; Jha et al., <xref ref-type="bibr" rid="B105">2012</xref>) highlight the interest in exploring N<sub>2</sub>-fixing halotolerant PGPRs as potential bio-fertilizer resources for saline soil-based agriculture.</p>
</sec>
<sec>
<title>Halophytes and PGPRs that control phytopathogens</title>
<p>In addition to disrupting plant physiology and morphology, soil salinity increases plant susceptibility to pathogens (Besri, <xref ref-type="bibr" rid="B28">1993</xref>). Plant diseases are a major constraint to crop yields but can potentially be controlled biologically by using PGPRs. Biological control using PGPRs offers a more eco-friendly approach to disease management than agricultural chemicals (Compant et al., <xref ref-type="bibr" rid="B47">2010</xref>; Etesami and Alikhani, <xref ref-type="bibr" rid="B68">2018</xref>). Some mechanisms that PGPRs use to counter the deleterious effects of phytopathogens include (Olanrewaju et al., <xref ref-type="bibr" rid="B165">2017</xref>): (i) the synthesis of one or more antimicrobial metabolites (Couillerot et al., <xref ref-type="bibr" rid="B48">2009</xref>), many of which have been reported in PGPRs of the genera <italic>Bacillus</italic> and <italic>Pseudomonas</italic>. These metabolites may serve as cytotoxic, antifungal, antibacterial, phytotoxic, antihelminthic, antiviral, antioxidant, and/or antitumor agents (Olanrewaju et al., <xref ref-type="bibr" rid="B165">2017</xref>); (ii) the production of fungal cell wall-degrading enzymes (Chernin et al., <xref ref-type="bibr" rid="B45">1995</xref>) such as lipase, which can degrade some fungal cell wall-associated lipids, &#x003B2;-1,3-glucanase, which can degrade cell wall carbohydrates, chitinase, which can degrade the integral fungal cell wall component chitin (Husson et al., <xref ref-type="bibr" rid="B98">2017</xref>), and protease, which can degrade cell wall proteins (Vaddepalli et al., <xref ref-type="bibr" rid="B243">2017</xref>); (iii) competition either for nutrients or for binding sites on plant roots (Barahona et al., <xref ref-type="bibr" rid="B22">2011</xref>); such competition can limit phytopathogen growth or binding to the plant thereby making it difficult for the pathogen to proliferate (Olanrewaju et al., <xref ref-type="bibr" rid="B165">2017</xref>); (iv) the synthesis of hydrogen cyanide, which when produced by bio-control PGPRs such as <italic>Rhizobium, Pseudomonas, Alcaligenes, Bacillus</italic>, and <italic>Aeromonas</italic>, inhibits cytochrome C oxidase as well as other important metalloenzymes (Nandi et al., <xref ref-type="bibr" rid="B158">2017</xref>); (v) activation of induced systemic resistance, which is a resistance mechanism in plants (Van Loon et al., <xref ref-type="bibr" rid="B244">1998</xref>; Halfeld-Vieira et al., <xref ref-type="bibr" rid="B93">2006</xref>) in which exposure of plants to specific microbes, such as some biocontrol PGPRs, primes the plant to react faster and more strongly to a subsequent pathogen attack (Olanrewaju et al., <xref ref-type="bibr" rid="B165">2017</xref>). Induction of systemic resistance provides strong protection coordinated by phytohormone signaling pathways (Pieterse et al., <xref ref-type="bibr" rid="B177">2012</xref>, <xref ref-type="bibr" rid="B178">2014</xref>; Walters et al., <xref ref-type="bibr" rid="B247">2013</xref>); (vi) quorum quenching, which is the disruption of signaling among pathogens. This may occur via the production of signal-degrading enzymes such as lactonase, and the subsequent loss of disruption of signaling may minimize pathogen virulence (Olanrewaju et al., <xref ref-type="bibr" rid="B165">2017</xref>); and (vii) synthesis of siderophores (Olanrewaju et al., <xref ref-type="bibr" rid="B165">2017</xref>), which can prevent or reduce pathogen proliferation by reducing the iron available to pathogens (Shen et al., <xref ref-type="bibr" rid="B215">2013</xref>). The siderophores from PGPRs have been found, at least in some cases, to have a higher affinity for Fe<sup>3&#x0002B;</sup> than the siderophores from fungal pathogens (Kloepper et al., <xref ref-type="bibr" rid="B124">1980</xref>), thus giving the PGPRs a competitive advantage for iron.</p>
<p>Halophilic PGPRs may also provide biological control of phytopathogens. Many can produce antibiotics and antifungal metabolites, as shown in the halophilic bacteria <italic>B. subtilis, B. cereus, B. pumilus, B. licheniformis, Halomonas elongate</italic>, and <italic>Halobacillus halophilus</italic>, which antagonize phytopathogenic fungi such as <italic>Fusarium sambucinum, F. roseum</italic> var. <italic>sambucinum, F. oxysporum, F. moniliforme, F. graminearum, Penicillium citrinum, Aspergillus flavus</italic>, and <italic>Botrytis cinerea</italic>; these organisms have been shown to produce antibiotics, proteases, chitinases, and &#x003B2;&#x02212;1,3-glucanases (Niehaus et al., <xref ref-type="bibr" rid="B161">1999</xref>; Sadfi et al., <xref ref-type="bibr" rid="B197">2001</xref>, <xref ref-type="bibr" rid="B198">2002</xref>; Sadfi-Zouaoui et al., <xref ref-type="bibr" rid="B199">2008</xref>; Essghaier et al., <xref ref-type="bibr" rid="B66">2009</xref>; Siddikee et al., <xref ref-type="bibr" rid="B220">2010</xref>; Berrada et al., <xref ref-type="bibr" rid="B27">2012</xref>; Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>; Goswami et al., <xref ref-type="bibr" rid="B89">2014</xref>; Singh and Jha, <xref ref-type="bibr" rid="B222">2016</xref>). For example, the strains <italic>B. halotolerans</italic> Ps9 and <italic>B. pumilus</italic> Ps19, which were isolated from the halophyte <italic>P. strombulifera</italic>, exhibited protease activity and inhibited the growth of the phytopathogenic fungus <italic>Alternaria</italic> sp. by more than 50%, at least on plates (Sgroy et al., <xref ref-type="bibr" rid="B208">2009</xref>). Similarly, a halotolerant PGPR <italic>Pseudomonas</italic> sp. strain isolated from the halophyte <italic>Suaeda salsa</italic> suppressed the growth of the phytopathogenic fungi <italic>Fusarium oxysporum</italic> f. sp. <italic>cucumerinum</italic> and <italic>F. oxysporum</italic> f. sp. <italic>conglutinans</italic> (Teng et al., <xref ref-type="bibr" rid="B232">2010</xref>). The biological control potential of halophilic bacteria may be correlated with their production of membrane-bound or extracellular hydrolytic enzymes (Sadfi-Zouaoui et al., <xref ref-type="bibr" rid="B199">2008</xref>). Although antagonistic halotolerant PGPRs may provide an ecologically friendly alternative to synthetic fungicides, research is needed to evaluate that antagonistic potential of halotolerant PGPRs against phytopathogens, and the severity of the disease pressure by these pathogens, in saline environments (Sadfi-Zouaoui et al., <xref ref-type="bibr" rid="B199">2008</xref>).</p>
</sec>
</sec>
<sec id="s4">
<title>Conclusions and future prospects</title>
<p>This review has highlighted the potential for halophytes to be used as an isolation source for halotolerant PGPRs, including PGPRs that exhibit PGP traits such as IAA production, phosphate solubilization, siderophore production, N<sub>2</sub> fixation, ACC deaminase activity, and control of phytopathogens. Halotolerant PGPRs isolated from the endosphere or rhizosphere of halophytes can be used to enhance the growth, and possibly the yield, of halophytic and non-halophytic crops (S&#x000E1;enz-Mata et al., <xref ref-type="bibr" rid="B200">2016</xref>). Crop inoculation with halotolerant PGPRs is therefore a viable strategy for sustainable crop production in salinity-based agriculture, which includes crop production in arid and semiarid environments (Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>). Several avenues of research would move us closer to adopting this strategy for salinity-based agriculture:</p>
<list list-type="roman-lower">
<list-item><p>Although some beneficial effects of halotolerant PGPRs on salinity-affected plants are known, many of the underlying physiological and molecular mechanisms contributing to enhanced plant growth and halotolerance are not. Knowledge of these mechanisms, and the portfolio of traits optimal for inoculum performance, would contribute to designing agronomic applications of these bacteria for saline-based agriculture (Dodd and P&#x000E9;rez-Alfocea, <xref ref-type="bibr" rid="B57">2012</xref>).</p></list-item>
<list-item><p>Knowledge of how the endogenous bacterial and fungal microbiomes of halophytes contribute to halophyte resistance to extreme salinity would provide insights into optimal applications of introduced halotolerant PGPRs.</p></list-item>
<list-item><p>Increasing global food production requires improved crop production not only in saline soils, but also in areas where the irrigation water is contaminated with salt (Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>). This is an increasing problem in coastal zones and thus will be increasingly important in many parts of the world. Halophytes should be explored as a reservoir for halotolerant PGPRs for uses under these conditions as well as in saline soils.</p></list-item>
<list-item><p>Since the diversity of halotolerant PGPRs in salt-affected soils and in the microbiome of halophytic plants depends on soil parameters and plant species (Qin et al., <xref ref-type="bibr" rid="B182">2016</xref>; Szyma&#x00144;ska, et al., <xref ref-type="bibr" rid="B230">2016</xref>), further studies on the diversity of the microbial communities in the rhizosphere and endosphere of various halophytic plant species are needed to clarify and describe these ecological associations in saline soil-based agriculture.</p></list-item>
<list-item><p>Knowledge of the signaling mechanisms and factors influencing the interactions between halotolerant PGPRs and halophytes and glycophytes in the field will provide a better understanding of the ecology of these bacteria and how they have promoted halophyte adaptation to high salinity environments (Egamberdiyeva and Islam, <xref ref-type="bibr" rid="B64">2008</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>).</p></list-item>
<list-item><p>Knowledge of the biochemical and physiological characteristics of PGPRs associated with halophytes could facilitate strategies for plant protection and remediation of saline soils (Ruppel et al., <xref ref-type="bibr" rid="B195">2013</xref>; Egamberdieva and Lugtenberg, <xref ref-type="bibr" rid="B63">2014</xref>; Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>).</p></list-item>
<list-item><p>Agricultural inoculants, including those for bio-stimulation, often vary in efficacy due, in part, to their strong dependence on environmental context for activity. Although the isolation of halotolerant PGPRs from halophytes in saline soils should increase the probability that the strains are active in saline soils (Khan et al., <xref ref-type="bibr" rid="B122">2009</xref>), knowledge of the key environmental traits that influence their activity could help reduce variation in efficacy. Moreover, isolating PGPRs from roots under conditions of high alkalinity, acidity or salinity, drought, high and low temperatures, and flooded conditions could provide strains or traits that are efficacious in plant protection or growth promotion under diverse agricultural conditions (Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>).</p></list-item>
<list-item><p>Knowledge of the molecular mechanisms by which salt-tolerant PGPRs increase plant resistance to salinity may suggest genetic approaches to engineer bacteria with enhanced abilities to stimulate plant growth and salinity tolerance, as well as plants that are improved in their ability to interact with halotolerant PGPRs (Khan et al., <xref ref-type="bibr" rid="B121">2016</xref>).</p></list-item>
<list-item><p>Knowledge of the endophytic and rhizospheric fungi associated with halophytes and their impacts on halophyte growth and survival may contribute to additional strategies for protecting halophyte and non-halophyte plants in saline soils (Sharma et al., <xref ref-type="bibr" rid="B214">2016</xref>).</p></list-item>
<list-item><p>To increase our fundamental knowledge of microbial interactions with halophytes, investigations are needed that address the specificity of halophyte-microbe interactions, the effect of root exudates on these interactions, and the effect of root exudates on gene expression related to plant growth promotion and biological control.</p></list-item>
<list-item><p>Lastly, the development of halotolerant PGPRs that can sustainably improve plant growth under diverse high salinity crop production conditions requires that the performance of these strains be examined over long periods (at least 2 years) on a scale that is relevant to crop production and under field conditions that provide a diversity of soil conditions and environmental stresses. Sustainable improvements in crop productivity may benefit from strategies that combine PGPRs with stress-tolerant beneficial fungi, and that involve co-inoculating multiple PGPRs that alleviate distinct stresses. The latter is particularly appealing given the co-occurrence of many stresses, such as drought, salinity, and heavy metal contamination, in field soils. Importantly, halotolerant PGPRs that are used effectively in agriculture may also contribute to applications for phytoremediation, phytodesalinization, bio-fertilization, and biological control.</p></list-item>
</list>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>HE gathered literature and prepared the manuscript. GB revised and approved the final version to be published.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack>
<p>We wish to thank University of Tehran and Iowa State University for providing the necessary facilities for this study.</p>
</ack>
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