<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2017.01274</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Intestinal Anti-inflammatory Effects of Outer Membrane Vesicles from <italic>Escherichia coli</italic> Nissle 1917 in DSS-Experimental Colitis in Mice</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>F&#x00E1;brega</surname> <given-names>Mar&#x00ED;a-Jos&#x00E9;</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/323148/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Rodr&#x00ED;guez-Nogales</surname> <given-names>Alba</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/456495/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Garrido-Mesa</surname> <given-names>Jos&#x00E9;</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/453317/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Algieri</surname> <given-names>Francesca</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/352361/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bad&#x00ED;a</surname> <given-names>Josefa</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/323113/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Gim&#x00E9;nez</surname> <given-names>Rosa</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/323120/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>G&#x00E1;lvez</surname> <given-names>Julio</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x2021;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/428578/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Baldom&#x00E0;</surname> <given-names>Laura</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x2021;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/323109/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Departament de Bioqu&#x00ED;mica i Fisiologia, Facultat de Farm&#x00E0;cia i Ci&#x00E8;ncies de l&#x2019;Alimentaci&#x00F3;, Universitat de Barcelona, Institut de Biomedicina de la, Universitat de Barcelona</institution> <country>Barcelona, Spain</country></aff>
<aff id="aff2"><sup>2</sup><institution>Microbiota Intestinal, Institut de Recerca Sant Joan de D&#x00E9;u</institution> <country>Esplugues de Llobregat, Spain</country></aff>
<aff id="aff3"><sup>3</sup><institution>Centro de Investigaci&#x00F3;n Biom&#x00E9;dica en Red de Enfermedades Hep&#x00E1;ticas y Digestivas, Department of Pharmacology, ibs.GRANADA, Center for Biomedical Research, University of Granada</institution> <country>Granada, Spain</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: <italic>Juarez Antonio Sim&#x00F5;es Quaresma, Federal University of Par&#x00E1;, Brazil</italic></p></fn>
<fn fn-type="edited-by"><p>Reviewed by: <italic>Hani El-Nezami, University of Hong Kong, Hong Kong; Wim Van Den Broeck, Ghent University, Belgium; Pascale Alard, University of Louisville, United States</italic></p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x002A;Correspondence: <italic>Laura Baldom&#x00E0;, <email>lbaldoma@ub.edu</email></italic></p></fn>
<fn fn-type="other" id="fn002"><p><sup>&#x2020;</sup><italic>These authors have contributed equally to this work.</italic></p></fn>
<fn fn-type="other" id="fn003"><p><sup>&#x2021;</sup><italic>These authors have contributed equally to the supervision of the study.</italic></p></fn>
<fn fn-type="other" id="fn004"><p>This article was submitted to Microbial Immunology, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>11</day>
<month>07</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>8</volume>
<elocation-id>1274</elocation-id>
<history>
<date date-type="received">
<day>21</day>
<month>04</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>06</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2017 F&#x00E1;brega, Rodr&#x00ED;guez-Nogales, Garrido-Mesa, Algieri, Bad&#x00ED;a, Gim&#x00E9;nez, G&#x00E1;lvez and Baldom&#x00E0;.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>F&#x00E1;brega, Rodr&#x00ED;guez-Nogales, Garrido-Mesa, Algieri, Bad&#x00ED;a, Gim&#x00E9;nez, G&#x00E1;lvez and Baldom&#x00E0;</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p><italic>Escherichia coli</italic> Nissle 1917 (EcN) is a probiotic strain with proven efficacy in inducing and maintaining remission of ulcerative colitis. However, the microbial factors that mediate these beneficial effects are not fully known. Gram-negative bacteria release outer membrane vesicles (OMVs) as a direct pathway for delivering selected bacterial proteins and active compounds to the host. In fact, vesicles released by gut microbiota are emerging as key players in signaling processes in the intestinal mucosa. In the present study, the dextran sodium sulfate (DSS)-induced colitis mouse model was used to investigate the potential of EcN OMVs to ameliorate mucosal injury and inflammation in the gut. The experimental protocol involved pre-treatment with OMVs for 10 days before DSS intake, and a 5-day recovery period. Oral administration of purified EcN OMVs (5 &#x03BC;g/day) significantly reduced DSS-induced weight loss and ameliorated clinical symptoms and histological scores. OMVs treatment counteracted altered expression of cytokines and markers of intestinal barrier function. This study shows for the first time that EcN OMVs can mediate the anti-inflammatory and barrier protection effects previously reported for this probiotic in experimental colitis. Remarkably, translation of probiotics to human healthcare requires knowledge of the molecular mechanisms involved in probiotic&#x2013;host interactions. Thus, OMVs, as a non-replicative bacterial form, could be explored as a new probiotic-derived therapeutic approach, with even lower risk of adverse events than probiotic administration.</p>
</abstract>
<kwd-group>
<kwd>probiotic</kwd>
<kwd><italic>Escherichia coli</italic> Nissle 1917</kwd>
<kwd>outer membrane vesicles</kwd>
<kwd>DSS-experimental colitis</kwd>
<kwd>mouse model</kwd>
<kwd>immune modulation</kwd>
</kwd-group>
<contract-num rid="cn001">Grants AGL2012-34985</contract-num>
<contract-num rid="cn001">AGL2016-79113-R (AEI/FEDER, UE)</contract-num>
<contract-num rid="cn001">AGL2015-67995-C3-3-R</contract-num>
<contract-num rid="cn002">Grant CTS-164</contract-num>
<contract-num rid="cn003">CIBEREHD</contract-num>
<contract-num rid="cn004">2014SGR1017</contract-num>
<contract-sponsor id="cn001">Ministerio de Econom&#x00ED;a y Competitividad<named-content content-type="fundref-id">10.13039/501100003329</named-content></contract-sponsor>
<contract-sponsor id="cn002">Consejer&#x00ED;a de Econom&#x00ED;a, Innovaci&#x00F3;n, Ciencia y Empleo, Junta de Andaluc&#x00ED;a<named-content content-type="fundref-id">10.13039/501100002878</named-content></contract-sponsor>
<contract-sponsor id="cn003">Instituto de Salud Carlos III<named-content content-type="fundref-id">10.13039/501100004587</named-content></contract-sponsor>
<contract-sponsor id="cn004">Generalitat de Catalunya<named-content content-type="fundref-id">10.13039/501100002809</named-content></contract-sponsor>
<counts>
<fig-count count="7"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="69"/>
<page-count count="13"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec><title>Introduction</title>
<p>The term IBD mainly refers to UC and Crohn&#x2019;s disease. These are chronic inflammatory disorders of the intestinal tract that may cause life-threatening complications and have an increasing incidence worldwide. They are multifactorial diseases, and although their etiology remains poorly understood, they involve a dysregulated immune response against commensal gut microbes in genetically susceptible individuals with impaired intestinal epithelial integrity (<xref ref-type="bibr" rid="B68">Zhang and Li, 2014</xref>). Moreover, several studies have reported that IBD patients have lower microbiota diversity than healthy subjects, and an altered intestinal microbiota balance, which is known as dysbiosis (<xref ref-type="bibr" rid="B46">Ott et al., 2004</xref>; <xref ref-type="bibr" rid="B59">Sokol et al., 2008</xref>; <xref ref-type="bibr" rid="B40">Manichanh et al., 2012</xref>).</p>
<p>Conventional IBD therapies are complex, and not all patients show complete beneficial effects when treated with any of the drugs currently available to manage these intestinal conditions, including salicylates, corticoids, immunosuppressants and biological agents (<xref ref-type="bibr" rid="B31">Ko and Auyeung, 2014</xref>). Since dysbiosis is common in IBD, various therapeutic approaches targeting the modulation of the gut microbiota have been explored (<xref ref-type="bibr" rid="B50">Qiao et al., 2016</xref>). In this context, many studies have evaluated the therapeutic potential of certain bacteria, including commensal and probiotic strains, to ameliorate IBD in clinical trials (<xref ref-type="bibr" rid="B17">Fedorak, 2010</xref>; <xref ref-type="bibr" rid="B66">Wasilewski et al., 2015</xref>) or in animal models of colitis (<xref ref-type="bibr" rid="B15">Ewaschuk et al., 2008</xref>; <xref ref-type="bibr" rid="B21">Garrido-Mesa et al., 2011</xref>; <xref ref-type="bibr" rid="B58">Shen et al., 2012</xref>; <xref ref-type="bibr" rid="B29">Kang et al., 2013</xref>; <xref ref-type="bibr" rid="B41">Mart&#x00ED;n et al., 2015</xref>; <xref ref-type="bibr" rid="B60">Souza et al., 2016</xref>). Overall, these studies have shown the ability of these bacteria to exert beneficial effects on parameters related with gut function, including improvement of gut permeability, reduction of inflammatory cytokine production and/or release, and amelioration of the histological alterations observed in these inflammatory conditions. In some cases, these effects may be mediated, at least in part, by bacterial secreted factors (<xref ref-type="bibr" rid="B15">Ewaschuk et al., 2008</xref>; <xref ref-type="bibr" rid="B41">Mart&#x00ED;n et al., 2015</xref>) or by released membrane vesicles (<xref ref-type="bibr" rid="B58">Shen et al., 2012</xref>; <xref ref-type="bibr" rid="B29">Kang et al., 2013</xref>).</p>
<p>The probiotic EcN positively affects gastrointestinal homeostasis and microbiota balance. In fact, various clinical trials have reported its therapeutic benefits in inducing and maintaining remission of UC (<xref ref-type="bibr" rid="B54">Scaldaferri et al., 2016</xref>). EcN shows similar efficacy to the aminosalicylate mesalazine (<xref ref-type="bibr" rid="B36">Losurdo et al., 2015</xref>), which supports its use in the treatment of human UC (<xref ref-type="bibr" rid="B18">Floch et al., 2011</xref>). Similarly, the intestinal anti-inflammatory effects of this probiotic have been reported in experimental models of colitis in mice and rats (<xref ref-type="bibr" rid="B22">Grabig et al., 2006</xref>; <xref ref-type="bibr" rid="B63">Ukena et al., 2007</xref>; <xref ref-type="bibr" rid="B4">Arribas et al., 2009</xref>; <xref ref-type="bibr" rid="B21">Garrido-Mesa et al., 2011</xref>; <xref ref-type="bibr" rid="B60">Souza et al., 2016</xref>). Several mechanisms have been reported to be involved in the beneficial effects of this probiotic in IBD, such as its ability to modulate the host immune response toward an anti-inflammatory balance (<xref ref-type="bibr" rid="B62">Trebichavsky et al., 2010</xref>). In addition, EcN reinforces the intestinal epithelial barrier by strengthening TJs between intestinal epithelial cells (<xref ref-type="bibr" rid="B63">Ukena et al., 2007</xref>; <xref ref-type="bibr" rid="B69">Zyrek et al., 2007</xref>; <xref ref-type="bibr" rid="B25">Hering et al., 2014</xref>) and increasing the expression of antimicrobial factors such as microcins (<xref ref-type="bibr" rid="B53">Sassone-Corsi et al., 2016</xref>) and &#x03B2;-defensin-2 (<xref ref-type="bibr" rid="B55">Schlee et al., 2007</xref>). It is important to note that these effects were mainly established when live probiotic suspensions were administered. There is little reported information describing the bacterial factors that could mediate these effects. In this context, membrane vesicles released by commensal bacteria are currently receiving great attention as key players in signaling processes in the intestinal mucosa (<xref ref-type="bibr" rid="B30">Kaparakis-Liaskos and Ferrero, 2015</xref>; <xref ref-type="bibr" rid="B45">Olsen and Amano, 2015</xref>). The release of bacterial vesicles provides a mechanism for the delivery of microbial proteins and active compounds directly to the host, thus avoiding direct intercellular contact. Recently, it has been reported that OMVs released by the probiotic EcN enter intestinal epithelial cells via clathrin-mediated endocytosis, and thereby can trigger host immune and defense responses (<xref ref-type="bibr" rid="B11">Ca&#x00F1;as et al., 2016</xref>). In fact, <italic>in vitro</italic> and <italic>ex vivo</italic> studies have shown that EcN OMVs induce the expression of antimicrobial peptides and modulate the cytokine/chemokine response of gut epithelial and immune cells (<xref ref-type="bibr" rid="B16">F&#x00E1;brega et al., 2016</xref>). In addition, in intestinal epithelial cell lines, these vesicles promote upregulation of the TJ-proteins ZO-1 and claudin-14, but down-regulation of claudin-2, thus reinforcing intestinal barrier functions and reducing gut permeability (<xref ref-type="bibr" rid="B3">Alvarez et al., 2016</xref>).</p>
<p>Probiotics are Generally Regarded As Safe (GRAS), yet some concerns about the potential risk associated with their use should be considered, especially in immunocompromised individuals and neonates. In conditions of altered intestinal barrier, the probiotic may cause invasive infections leading to sepsis (<xref ref-type="bibr" rid="B34">Ledoux et al., 2006</xref>; <xref ref-type="bibr" rid="B7">Bleich et al., 2008</xref>; <xref ref-type="bibr" rid="B23">Gronbach et al., 2010</xref>). In this context, the use of probiotic- derived bioactive factors, such as OMVs, could potentially have healing benefits, while avoiding the risks associated with the administration of live bacteria.</p>
<p>Based on previous <italic>in vitro</italic> studies (<xref ref-type="bibr" rid="B3">Alvarez et al., 2016</xref>; <xref ref-type="bibr" rid="B16">F&#x00E1;brega et al., 2016</xref>) we hypothesized that EcN OMVs may contribute to the immunomodulatory and barrier strengthening effects of EcN in the gut. The aim of the present study was to evaluate the effects of OMVs isolated from EcN in the dextran sodium sulfate (DSS) model of mouse colitis, an experimental model that is widely used in preclinical assays to study new potential treatments for human IBD (<xref ref-type="bibr" rid="B12">Claes et al., 2011</xref>).</p>
</sec>
<sec id="s1" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec><title>EcN Culture and OMVs Preparation</title>
<p>The probiotic strain EcN (serotype O6:K5:H1) was provided by Ardeypharm (GmbH, Herdecke, Germany). OMVs were isolated from culture supernatants of EcN grown overnight at 37&#x00B0;C in Luria-Bertani broth (LB) as previously described (<xref ref-type="bibr" rid="B1">Aguilera et al., 2014</xref>). Briefly, bacterial cells were pelleted by centrifugation at 10,000 &#x00D7; <italic>g</italic> for 20 min at 4&#x00B0;C. The supernatant was filtered through a 0.22 &#x03BC;m-pore-size filter (Millipore) to remove residual bacteria, concentrated by centrifugation in a Centricon Plus-70 filter device (Millipore) followed by an additional filtration step. OMVs were then recovered by centrifugation at 150,000 &#x00D7; <italic>g</italic> for 1 h at 4&#x00B0;C, washed and resuspended in sterile PBS. Aliquots were stored at -20&#x00B0;C. The sterility of samples was assessed on LB-agar plates. Protein concentration was measured using the method of (<xref ref-type="bibr" rid="B37">Lowry et al., 1951</xref>).</p>
</sec>
<sec><title>Negative Staining and Transmission Electron Microscopy</title>
<p>Isolated OMVs were examined by transmission electron microscopy (TEM) after negative staining as described previously (<xref ref-type="bibr" rid="B1">Aguilera et al., 2014</xref>). A drop of OMV suspension was adsorbed for 2 min on Formvar/carbon coated-grids that were previously activated by UV light. Grids were washed with distilled water, stained with 2% uranyl acetate for 1 min, air dried and examined by TEM (Jeol, JEM 1010, Japan).</p>
</sec>
<sec><title>Dextran Sodium Sulfate (DSS) Model of Mouse Colitis</title>
<p>All studies were carried out in accordance with the &#x201C;Guide for the care and the Use of Laboratory Animals&#x201D; as promulgated by the National Institute of Health. The protocol was approved by the Ethics Committee of the University of Granada (Ref. No. CEEA-2010-286). Male C57BL/6J mice (7- to 9-weeks-old; approximately 20 g) were obtained from Janvier (St Berthevin Cedex, France). Animals were randomly assigned to three groups: non-colitic (<italic>n</italic> = 6), colitic (<italic>n</italic> = 9) and OMVs-treated (<italic>n</italic> = 9). Mice were fed <italic>ad libitum</italic> during the entire experimental period (20 days) on AIN-93G growth purified diet, and animal body weight, as well as food and water intake, were evaluated daily. The experimental design is shown in <bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>. Every day throughout the experimental period (20 days), the two reference groups (non-colitic and colitic) received PBS solution (200 &#x03BC;l), and the treated group received EcN OMVs (5 &#x03BC;g in 200 &#x03BC;l of PBS) by means of an oesophageal catheter. Ten days after starting the experiment, colitis was induced by adding DSS (36&#x2013;50 kDa, MP Biomedical, Scarborough, ON, United States) to the drinking water at a final concentration of 3% (<xref ref-type="bibr" rid="B39">M&#x00E4;hler et al., 1998</xref>). This treatment was applied to all groups for 5 days, except for mice from the reference non-colitic group, which drank tap water throughout the experiment. During this DSS-induced colitis period, the OMVs-treated group was daily administered with EcN OMVs (5 &#x03BC;g/mouse in 200 &#x03BC;l PBS). After colitis damage, 200 &#x03BC;l of PBS were administered daily to all groups except for the OMVs-treated model, which continued with the OMVs treatment for five additional days. All mice were sacrificed 20 days after beginning of the experiment. Animals were previously anesthetized with ketamine (100 mg/kg) and xylazine (10 mg/kg). After starting the DSS intake, animal body weight, the presence of gross blood in the feces and stool consistency were individually evaluated daily (by an observer who was unaware of the treatment). Each parameter was assigned a score according to the criteria proposed previously by (<xref ref-type="bibr" rid="B13">Cooper et al., 1993</xref>) and used to calculate an average daily DAI (<bold>Table <xref ref-type="table" rid="T1">1</xref></bold>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Experimental design to evaluate the potential of EcN OMVs to alleviate DSS-induced colitis in mice. The OMV-treated group daily received intragastrically 200 &#x03BC;l of PBS containing 5 &#x03BC;g of EcN OMVs over the 20-day experimental period, whereas the colitic group received 200 &#x03BC;l of PBS. The non-colitic control group was not challenged with DSS and received 200 &#x03BC;l of PBS over the entire experimental period.</p></caption>
<graphic xlink:href="fmicb-08-01274-g001.tif"/>
</fig>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Scoring index for disease activity.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Score</th>
<th valign="top" align="center">Weight loss (%)</th>
<th valign="top" align="center">Stool consistency</th>
<th valign="top" align="center">Rectal bleeding</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">0</td>
<td valign="top" align="center">None</td>
<td valign="top" align="center">Normal</td>
<td valign="top" align="center">Normal</td>
</tr>
<tr>
<td valign="top" align="left">1</td>
<td valign="top" align="center">1&#x2013;5</td>
<td valign="top" align="center"></td>
<td valign="top" align="center"></td>
</tr>
<tr>
<td valign="top" align="left">2</td>
<td valign="top" align="center">5&#x2013;10</td>
<td valign="top" align="center">Loose stools</td>
<td valign="top" align="center"></td>
</tr>
<tr>
<td valign="top" align="left">3</td>
<td valign="top" align="center">10&#x2013;20</td>
<td valign="top" align="center"></td>
<td valign="top" align="center"></td>
</tr>
<tr>
<td valign="top" align="left">4</td>
<td valign="top" align="center">>20</td>
<td valign="top" align="center">Diarrhea</td>
<td valign="top" align="center">Gross bleeding</td>
</tr>
<tr>
<td valign="top" align="left"></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>Disease Activity Index was calculated by adding combined scores for weight loss, stool consistency and rectal bleeding, and dividing the resulting global score by three. Adapted from <xref ref-type="bibr" rid="B13">Cooper et al. (1993)</xref>.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>Once mice were sacrificed, the colon was excised from anus to caecum, emptied and washed with PBS before being measured and weighed. Representative specimens (0.5 cm length containing all wall layers) were taken from the distal inflamed region and fixed in 4% buffered formaldehyde for histological analysis. Other fragments were placed in RNA later stabilization reagent (Qiagen GmbH, Hilden, Germany) and stored at -80&#x00B0;C until RNA extraction. The remaining colonic tissue was subsequently sectioned in different longitudinal fragments to be used for biochemical determinations.</p>
</sec>
<sec><title>Colonic Organ Culture and ELISA Assays</title>
<p>Small fragments of colonic tissue were weighted, cut and then cultured in DMEM (Gibco, Grand Island, NY, United States) supplemented with 10% (v/v) of heat inactivated fetal bovine serum, 1% penicillin/streptomycin, 1% amphotericin, 2% glutamine and 0.45% glucose and incubated at 37&#x00B0;C in a 5% CO<sub>2</sub> atmosphere. After 24-h culture, the supernatants were collected, centrifuged and stored at -80&#x00B0;C until assay. IL-1&#x03B2;, IL-6 and IL-10 levels were measured using enzyme-linked immunosorbent assay (ELISA) kits (R&#x0026;D Systems, Minneapolis, MN, United States) according to the manufacturer&#x2019;s instructions. The results were expressed as pg/mg protein.</p>
</sec>
<sec><title>Histological Studies</title>
<p>The colonic samples that were fixed in formaldehyde were paraffin-embedded, sectioned (5 &#x03BC;m) at different levels, and stained with haematoxylin and eosin. Tissues were reviewed in a blinded fashion and the histological damage was assessed according to a previously validated intestinal histologic inflammatory score (<xref ref-type="bibr" rid="B10">Camuesco et al., 2012</xref>). This score takes into account the presence of ulceration, infiltration, oedema and the condition of crypts. After evaluation of these features a score ranging from 0 (healthy tissue) to 3 or 4 (severe damage), depending on the item, was assigned to each one. For each sample, the total score was calculated from the sum of each item&#x2019;s score.</p>
</sec>
<sec><title>Gene Expression Analysis in Colonic Samples by RT-qPCR</title>
<p>Tissue was homogenized in 1 ml of QIAzol using a Precellys 24 homogenizer (Bertin Technologies, Montigny-Le bretonneux, France). Total RNA was isolated using RNeasy Mini Kit (Qiagen, Hilden, Germany) following the manufacturer&#x2019;s protocol. Purity and RNA concentration were measured by the absorbance ratio at 260 and 280 in a Thermo Scientific Nano Drop TM 2000 Spectrophotometer. RNA integrity was verified by visualization of 28S and 18S rRNAs after 1% agarose/formaldehyde gel electrophoresis. RNA (2 &#x03BC;g) was reverse transcribed using oligo (dT) primers (Promega, Southampton, United Kingdom). The resulting cDNA (20 ng) was amplified on optical grade 48-well plates in an Eco<sup>TM</sup> Real Time PCR System (Illumina, San Diego, CA, United States), using the KAPA Sybr Fast qPCR Master Mix (Kapa Biosystems, Inc., Wilmington, MA, United States) and specific primers for each gene (<bold>Table <xref ref-type="table" rid="T2">2</xref></bold>). The 2<sup>-&#x0394;&#x0394;Ct</sup> method was used to normalize expression results. The values of the housekeeping glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene were used to normalize the values obtained for each of the genes under study. Relative gene expression was calculated by means of the &#x0394;&#x0394;Ct formula and expressed as fold-change compared with the non-colitic control.</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Primer sequences used for quantitative RT-PCR.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Gene</th>
<th valign="top" align="left">Sequence (5&#x2032;-3&#x2032;)</th>
<th valign="top" align="center">Annealing T (&#x00B0;C)</th>
<th valign="top" align="center">Gene accession number</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">GAPDH</td>
<td valign="top" align="left">FW: CCATCACCATCTTCCAGGAG</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_008084</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: CCTGCTTCACCACCTTCTTG</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">IL-1&#x03B2;</td>
<td valign="top" align="left">FW: TGATGAGAATGACCTCTTCT</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_008361.4</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: CTTCTTCAAAGATGAAGGAAA</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">IL-6</td>
<td valign="top" align="left">FW: TAGTCCTTCCTACCCCAATTTCC</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_031168.2</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: TTGGTCCTTAGCCACTCCTTCC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">IL-10</td>
<td valign="top" align="left">FW: TCCTTAATGCAGGACTTTAAGGG</td>
<td valign="top" align="center">56</td>
<td valign="top" align="center">NM_010548.2</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: GGTCTTGGAGCTTATTAAAAT</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">IL-12</td>
<td valign="top" align="left">FW: CCTGGGTGAGCCGACAGAAGC</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_001159424</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RW: CCACTCCTGGAACCTAAGCAC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">IL-17</td>
<td valign="top" align="left">FW: GCTCCAGAAGGCCCTCAGACTACC</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_010552.3</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: CTTCCCTCCGCATTGACACAGC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">TNF-&#x03B1;</td>
<td valign="top" align="left">FW: AACTAGTGGTGCCAGCCGAT</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_013693.3</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: CTTCACAGAGCAATGACTCC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">INF-&#x03B3;</td>
<td valign="top" align="left">FW: GAACTGGCAAAAGGATGGTGA</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_008337.4</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: TGTGGGTTGTTGACCTCAAAC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">MIP-2</td>
<td valign="top" align="left">FW: AGTTAGCCTTGCCTTTGTTCAG</td>
<td valign="top" align="center">57</td>
<td valign="top" align="center">NM_009140.2</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: CAGTGAGCTGCGCTGTCCAATG</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">MMP-2</td>
<td valign="top" align="left">FW: TGCCGGCACCACTGAGGACTAC</td>
<td valign="top" align="center">56</td>
<td valign="top" align="center">XM_006530751.2</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: GGGCTGCCACGAGGAACA</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">MMP-9</td>
<td valign="top" align="left">FW: TGGGGGCAACTCGGC</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_013599.4</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: GGAATGATCTAAGCCCAG</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">iNOS</td>
<td valign="top" align="left">FW: GTTGAAGACTGAGACTCTGG</td>
<td valign="top" align="center">67</td>
<td valign="top" align="center">NM_010927.4</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: ACTAGGCTACTCCGTGGA</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">COX-2</td>
<td valign="top" align="left">FW: GGGTTGCTGGGGGAAGAAATG</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_011198.4</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: GGTGGCTGTTTTGGTAGGCTG</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">TFF-3</td>
<td valign="top" align="left">FW: CCTGGTTGCTGGGTCCTCTG</td>
<td valign="top" align="center">60</td>
<td valign="top" align="center">NM_011575.2</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: GCCACGGTTGTTACACTGCTC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Occludin</td>
<td valign="top" align="left">FW: ACGGACCCTGACCACTATGA</td>
<td valign="top" align="center">56</td>
<td valign="top" align="center">NM_008756.2</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: TCAGCAGCAGCCATGTACTC</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">ZO-1</td>
<td valign="top" align="left">FW: GGGGCCTACACTGATCAAGA</td>
<td valign="top" align="center">56</td>
<td valign="top" align="center">XM_006540782</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">RV: TGGAGATGAGGCTTCTGCTT</td>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left"></td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec><title>SDS&#x2013;PAGE and Western Blot Analysis</title>
<p>Protein concentration of colonic samples was measured using a BCA Protein Assay Kit. The intestinal inducible isoform of nitric oxide synthase (iNOS) was analyzed by Western blot. Samples (50 &#x03BC;g protein) were mixed with SDS&#x2013;PAGE sample buffer, boiled for 5 min at 95&#x00B0;C and electrophoresed on 6% SDS&#x2013;PAGE gel. Proteins were transferred to a HyBond-P polyvinylidene difluoride membrane using a Bio-Rad Mini Transblot apparatus. The membrane was blocked in PBS-0.05% Tween-20 and 5% skimmed milk (blocking solution) for 1 h at room temperature, and then incubated with specific antibodies against iNOS (Transduction Laboratories, Becton Dickinson Biosciences, Madrid, Spain), 1:2,000 dilution in blocking solution, for 16 h at 4&#x00B0;C, followed by incubation with peroxidase-conjugated anti-rabbit IgG antibody (1:3,000) for 1 h. The protein-antibody complex was visualized using the ECL Plus Western blotting detection system (Amersham Pharmacia Biotech). Control of protein loading and transfer was conducted by detection of the &#x03B2;-actin levels.</p>
</sec>
<sec><title>Statistics</title>
<p>Statistical analysis was performed using SPSS version 20.0 software (SPSS, Inc.) and GraphPad Prism version 6.0 (GraphPad Software Inc., La Jolla, CA, United States), and data were expressed as mean &#x00B1; SEM. Differences between more than two groups were assessed using one-way ANOVA followed by Tukey&#x2019;s test. Significant differences were established at <italic>P</italic> &#x2264; 0.05.</p>
</sec>
</sec>
<sec><title>Results</title>
<sec><title>EcN OMVs Improve Clinical Signs and Colonic Histology in DSS-Induced Mouse Colitis</title>
<p>OMVs were isolated from cell-free culture supernatants and evaluated by negative stain-TEM. Images showed spherical vesicles ranging in size from approximately 20&#x2013;60 nm in diameter (<bold>Figure <xref ref-type="fig" rid="F2">2</xref></bold>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Negative staining electron microscopy of isolated EcN OMVs. Vesicles were isolated from 1-liter LB culture of EcN and resuspended in a final volume of 0.2 ml PBS. A representative image of OMV samples (1:20 dilution) is shown. Scale bar: 200 nm.</p></caption>
<graphic xlink:href="fmicb-08-01274-g002.tif"/>
</fig>
<p>The <italic>in vivo</italic> protective effects of EcN OMVs were evaluated in male C57BL/6J mice treated with 3% DSS following the protocol outlined in <bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>, which involves pre-treatment with OMVs for 10 days before DSS intake, and a 5-day recovery period. The administration of EcN OMVs for 10 days before DSS intake did not result in significant modifications in body weight in comparison with non-treated mice. Body weight increase was around 15&#x2013;17% in all groups. When DSS was orally administered to mice, the intestinal inflammatory status was induced, and characterized in the control colitic group (DSS control) by marked body weight loss (<bold>Figure <xref ref-type="fig" rid="F3">3A</xref></bold>) and diarrhea with bleeding feces, which resulted in an increased DAI score in this group from day 5 (<bold>Figure <xref ref-type="fig" rid="F3">3B</xref></bold>). The administration of EcN OMVs to colitic mice (DSS-OMVs) ameliorated body weight loss (<bold>Figure <xref ref-type="fig" rid="F3">3A</xref></bold>) and notably reduced the DAI score from day 6 after DSS intake in comparison with the control colitic group. Statistically significant differences were obtained on the last day of the study (<bold>Figure <xref ref-type="fig" rid="F3">3B</xref></bold>). Once mice had been sacrificed, macroscopic evaluation of colonic segments confirmed the beneficial impact of EcN OMVs on the inflammatory process. In fact, colon length is inversely associated with the severity of DSS-induced colitis (<xref ref-type="bibr" rid="B48">Pandurangan et al., 2015</xref>), and the colonic weight/length ratio is widely used as an indicator of the colonic oedema that typically occurs in experimental colitis (<xref ref-type="bibr" rid="B26">Hou et al., 2014</xref>). The colonic weight/length ratio values were significantly higher in the colitic group than in the OMVs-treated group (<bold>Figure <xref ref-type="fig" rid="F3">3C</xref></bold>), thus revealing that EcN OMVs intake attenuated the colonic oedema associated with DSS-induced intestinal inflammation in mice.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>EcN OMVs treatment improves clinical signs of DSS-induced colitis in mice. After the 10-day pre-treatment period, mice received 3% DSS in drinking water for 5 days. Mice were sacrificed 5 days later. Mice from the OMVs-treated group (triangles; <italic>n</italic> = 9) were administered with EcN OMVs (5 &#x03BC;g/day) throughout the experiment, whereas the two other experimental groups, colitic DSS control (squares; <italic>n</italic> = 9) and non-colitic control (circles; <italic>n</italic> = 6), received PBS instead. <bold>(A)</bold> Weight evolution in animals over the DSS-treatment and the recovery period. Values are presented as percentage of the body weight at the beginning of DSS intake (day 0). <bold>(B)</bold> DAI score of each experimental group from the beginning of the induction of colitis by DSS treatment (day 0) until sacrifice (day 10), calculated as described in the Section &#x201C;Materials and Methods.&#x201D; <bold>(C)</bold> Colon weight/length ratio calculated following resection. Data are expressed as means &#x00B1; SEM. Different letters indicate significant differences between groups (<italic>P</italic> &#x003C; 0.05).</p></caption>
<graphic xlink:href="fmicb-08-01274-g003.tif"/>
</fig>
<p>Microscopic evaluation of the colonic samples also evidenced the intestinal anti-inflammatory effects of EcN OMVs on DSS-induced colitis. Intestinal tissue from the control colitic group revealed common characteristics that were previously reported for this experimental model of colitis (<xref ref-type="bibr" rid="B2">Algieri et al., 2014</xref>), including mucosal ulceration, with loss of the normal crypt structure and intense goblet cell depletion, together with inflammatory cell infiltration and oedema (<bold>Figure <xref ref-type="fig" rid="F4">4A</xref></bold>). Evaluation of colonic damage by the scoring method described above yielded high histological scores in colitic mice (DSS control group). In contrast, the colitic group treated with EcN OMVs showed recovery from the inflammatory process with an improvement in mucosal barrier integrity, as evidenced by a smaller ulceration surface and the presence of goblet cells replenished with their mucin content. In addition, samples from mice treated with OMVs showed lower inflammatory cell infiltration and tissue oedema than samples from the control colitic group. Consistently, microscopic evaluation of colonic damage in the OMV-treated colitic mice resulted in significant improvement in the histologic scores (<italic>P</italic> &#x003C; 0.05 vs. control colitic group) (<bold>Figure <xref ref-type="fig" rid="F4">4B</xref></bold>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>EcN OMVs treatment promotes recovery of DSS-induced intestinal injury and inflammation in mice. On day 20, colons were excised and processed for microscopic analysis. <bold>(A)</bold> Histological images of colonic tissue stained with haematoxylin and eosin showing the effect of EcN OMVs on DSS-induced colitis. Representative images of each experimental group are shown: Control, DSS control and DSS OMVs. In Control, images show the normal appearance of the intact mucosa containing the crypts with goblet cells plenty of their mucin content (arrows). In DSS control, images show changes in the mucosa with areas of ulceration on the epithelial layer (asterisks), reduction of goblet cells with depletion of their mucin content (arrows) and intense inflammatory cell infiltrate (cross). In DSS OMVs, an improvement of the colonic histology is observed, with reduced area of ulceration, mostly in process of recovery (asterisks), presence of goblet cells replenished with their mucin content (arrow) and reduced inflammatory cell infiltrate (cross). <bold>(B)</bold> Histological scores calculated after microscopic analyses of longitudinal colon sections as described in the Section &#x201C;Materials and Methods.&#x201D; Results are expressed as mean &#x00B1; SEM. Control group (<italic>n</italic> = 6), DSS control group (<italic>n</italic> = 9), DSS OMVs group (<italic>n</italic> = 9). Different letters indicate significant differences between groups (<italic>P</italic> &#x003C; 0.05).</p></caption>
<graphic xlink:href="fmicb-08-01274-g004.tif"/>
</fig>
</sec>
<sec><title>Intestinal Anti-inflammatory Effects of EcN OMVs Are Associated with an Improvement in the Altered Immune Response in DSS-Induced Mouse Colitis</title>
<p>It is well-known that DSS-induced colonic inflammation is associated with an altered immune response (<xref ref-type="bibr" rid="B67">Xu et al., 2014</xref>). Consistently, results from the RT-qPCR analysis performed in the present study revealed that mice from the colitic group showed significant higher mRNA expression of the pro-inflammatory cytokines IL-1&#x03B2;, TNF-&#x03B1;, IL-6, MIP-2 and INF&#x03B3; than the non-colitic group. A trend of higher expression of cytokines IL-12 and IL-17 was also observed in the colitic group but the values did not reach statistical significance when compared with non-colitic mice. The treatment of colitic mice with EcN OMVs decreased the expression of all pro-inflammatory cytokines assayed. The results were statistically significant for IL-1&#x03B2;, TNF-&#x03B1; and IL-17 in comparison with control colitic mice (<bold>Figure <xref ref-type="fig" rid="F5">5A</xref></bold>). Moreover, the colonic inflammatory process induced by DSS was associated with lower expression of the anti-inflammatory cytokine IL-10, which was significantly counteracted by administration of EcN OMVs (<bold>Figure <xref ref-type="fig" rid="F5">5A</xref></bold>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Effects of EcN OMVs treatment on colonic cytokine expression in DSS colitic mice. <bold>(A)</bold> Relative mRNA levels of the indicated cytokines measured by RT-qPCR in colonic tissue. Data are presented as fold-change compared to the non-colitic control group (expression value set to 1). <bold>(B)</bold> IL-10, IL-1&#x03B2; and IL-6 protein levels measured by ELISA in culture supernatants of colonic fragments from mice of each experimental group incubated for 24 h in complete DMEM medium as described in the Section &#x201C;Materials and Methods.&#x201D; Data are expressed as mean &#x00B1; SEM. Control group (<italic>n</italic> = 6), DSS control group (<italic>n</italic> = 9), DSS OMVs group (<italic>n</italic> = 9). Different letters indicate significant differences between groups (<italic>P</italic> &#x003C; 0.05).</p></caption>
<graphic xlink:href="fmicb-08-01274-g005.tif"/>
</fig>
<p>The observed changes in colonic mRNA expression correlated well with the protein levels, as evidenced from the quantitative ELISA results of three representative cytokines (IL-10, IL-6 and IL-1&#x03B2;) (<bold>Figure <xref ref-type="fig" rid="F5">5B</xref></bold>). Levels of the pro-inflammatory cytokines IL-6 and IL-1&#x03B2; were significantly lower in the colitic group treated with EcN OMVs than in the corresponding control group (DSS control). Administration of EcN OMVs counterbalanced the DSS-mediated reduction in the colonic levels of the anti-inflammatory cytokine IL-10, although these results did not reach statistical significance, probably due to variability in the data (<bold>Figure <xref ref-type="fig" rid="F5">5B</xref></bold>).</p>
<p>The beneficial effects of EcN OMVs were also associated with the recovery of a marker of intestinal barrier function, the intestinal TFF-3, whose expression is downregulated in inflamed colonic tissue after DSS administration to mice. It is interesting to note that EcN OMVs restored the mRNA levels of TFF-3 to values similar to those found in the non-colitic control group (<bold>Figure <xref ref-type="fig" rid="F6">6</xref></bold>). Treatment with EcN OMVs did not counteract DSS-induced downregulation of ZO-1, but tended to increase occludin mRNA levels in DSS-treated mice, although data did not reach statistical significance (<bold>Figure <xref ref-type="fig" rid="F6">6</xref></bold>). In the context of tissue remodeling, we also measured the mRNA expression of two relevant MMPs, MMP-9 and MMP-2, which have opposing roles. MMP-9 promotes tissue injury in colitic mice, whereas MMP-2 has a protective role and contributes to the maintenance of gut barrier function (<xref ref-type="bibr" rid="B19">Garg et al., 2009</xref>). Accordingly, mice in the colitic group showed greater expression of MMP-9 and lower expression of MMP-2 than non-colitic mice. Both DSS-mediated effects were countered by treatment with EcN OMVs, but only the reduction in colonic MMP-9 mRNA levels was statistically significant (<bold>Figure <xref ref-type="fig" rid="F6">6</xref></bold>). Consequently, the effects exerted by EcN OMVs on the altered expression of MMPs during colitis can contribute to their ability to protect against tissue damage induced by DSS.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Effects of EcN OMVs treatment on colonic expression of markers of intestinal barrier function in DSS colitic mice. Relative mRNA levels of TFF-3, MMP-9, MMP-2, ZO-1 and occludin were measured by RT-qPCR in colonic tissue. Data are presented as fold-change compared to the non-colitic control group. Control group (<italic>n</italic> = 6), DSS control group (<italic>n</italic> = 9), DSS OMVs group (<italic>n</italic> = 9). Data are presented as mean &#x00B1; SEM. Different letters indicate significant differences between groups (<italic>P</italic> &#x003C; 0.05).</p></caption>
<graphic xlink:href="fmicb-08-01274-g006.tif"/>
</fig>
<p>In addition, RT-qPCR analysis was performed for the inflammatory enzymes COX-2 and inducible iNOS, known to be upregulated in DSS-induced colitis. Administration of EcN OMVs to colitic mice significantly reduced the expression of both enzymes, which were highly expressed in the colonic tissue of untreated colitic mice (<bold>Figure <xref ref-type="fig" rid="F7">7A</xref></bold>). Western blotting of iNOS confirmed the compensatory effect mediated by EcN OMVs at protein level (<bold>Figure <xref ref-type="fig" rid="F7">7B</xref></bold>).</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Effects of EcN OMVs treatment on colonic COX-2 and iNOS expression. <bold>(A)</bold> Relative mRNA levels of COX-2 and iNOS measured by RT-qPCR in colonic tissue. Data are presented as fold-change compared to the non-colitic control group. Different letters indicate significant differences between groups (<italic>P</italic> &#x003C; 0.05). <bold>(B)</bold> Western blot analysis of iNOS levels in colonic fragments collected from three mice (lines 1, 2, 3) of each group. Anti-&#x03B2;-actin antibody was used as internal control. Representative images are shown.</p></caption>
<graphic xlink:href="fmicb-08-01274-g007.tif"/>
</fig>
</sec>
</sec>
<sec><title>Discussion</title>
<p>The etiology of IBD has not been completely elucidated to date. However, it has been proposed that intestinal dysbiosis is crucial, since it can promote an inappropriate immune response in genetically susceptible individuals, leading to the inflammatory status that characterizes these intestinal conditions (<xref ref-type="bibr" rid="B5">Becker et al., 2015</xref>). Accordingly, restoration of intestinal microbiota composition through the administration of probiotics could have beneficial effects against the inflammatory response, as has been shown both in experimental models and in human IBD (<xref ref-type="bibr" rid="B12">Claes et al., 2011</xref>; <xref ref-type="bibr" rid="B6">Bellaguarda and Chang, 2015</xref>). EcN is one of the probiotics reported to have a beneficial effect in IBD, and plays a prominent role in therapy for this group of intestinal conditions in humans. In fact, the 2011 update of the American Recommendations for Probiotic Use gave very strong &#x201C;A&#x201D; recommendations for its use to maintain remission in human UC (<xref ref-type="bibr" rid="B18">Floch et al., 2011</xref>). The therapeutic efficacy of EcN has been more recently supported in a systematic review and meta-analysis (<xref ref-type="bibr" rid="B36">Losurdo et al., 2015</xref>). Among the mechanisms that might be involved in the beneficial effects exerted by EcN, its immunomodulatory properties could play a key role. In the gut, the probiotic can counteract altered cytokine production by immune cells (<xref ref-type="bibr" rid="B61">Sturm et al., 2005</xref>; <xref ref-type="bibr" rid="B24">Guzy et al., 2008</xref>) and restore damaged epithelium through the modulation of TJ and zonula occludens proteins (<xref ref-type="bibr" rid="B63">Ukena et al., 2007</xref>; <xref ref-type="bibr" rid="B69">Zyrek et al., 2007</xref>). Although direct interaction between the bacteria EcN and the immune or epithelial cells could be responsible for the observed effects, other mechanisms involving the production and release of secreted bacterial factors cannot be ruled out. Among these secreted factors, membrane vesicles play a key role in bacteria&#x2013;host communication, allowing the delivery of effector molecules upon interaction and internalization into the host cells. In fact, OMVs enclose many of the biological components that can be found in the bacterium and, specifically, ligands of pattern recognition receptors such as LPS (TLR-4 ligand), peptidoglycan (NOD-1/NOD-2 ligand) or DNA (TLR-9 ligand), among others. These receptors, which are expressed in epithelial and immune cells, are key components of innate immunity as they sense gut microbes and trigger appropriate immune responses. Therefore, bacteria-released OMVs can mediate most of the effects of the bacterium. Remarkably, OMVs as non-replicative bacterial forms further reduce the low risk of adverse events associated with the administration of the probiotic (<xref ref-type="bibr" rid="B7">Bleich et al., 2008</xref>; <xref ref-type="bibr" rid="B23">Gronbach et al., 2010</xref>; <xref ref-type="bibr" rid="B44">Olier et al., 2012</xref>).</p>
<p>Previous studies performed in human cell lines and human colonic explants have shown the immunomodulatory and barrier strengthening potential of EcN OMVs (<xref ref-type="bibr" rid="B3">Alvarez et al., 2016</xref>; <xref ref-type="bibr" rid="B16">F&#x00E1;brega et al., 2016</xref>). Since orally administered live EcN suspensions ameliorate DSS-induced colitis in mice (<xref ref-type="bibr" rid="B22">Grabig et al., 2006</xref>; <xref ref-type="bibr" rid="B21">Garrido-Mesa et al., 2011</xref>; <xref ref-type="bibr" rid="B44">Olier et al., 2012</xref>), we sought to explore whether EcN OMVs could prevent colonic damage in the same experimental model of intestinal inflammation. This is a well-established animal model that resembles human UC, and it has been validated for the translation of mouse data to humans (<xref ref-type="bibr" rid="B28">Jiminez et al., 2015</xref>).</p>
<p>The present study demonstrates that oral administration of OMVs isolated from EcN has intestinal anti-inflammatory properties in the DSS experimental model of colitis, as previously reported when a suspension of the viable probiotic was administered (<xref ref-type="bibr" rid="B21">Garrido-Mesa et al., 2011</xref>). The beneficial effects of EcN OMVs were already observed during the course of the experiment. In fact, reduction in weight loss and DAI evolution in mice treated with OMVs, compared to the control colitic group, clearly evidenced amelioration of the impact of the colitic process and improvement in the health status of mice.</p>
<p>Likewise, OMVs administration to colitic mice significantly reduced colonic damage. This was shown macroscopically by a significant reduction in the colonic weight/length ratio, which indicated amelioration of the tissue oedema that characterizes this colonic inflammatory process, and microscopically with recovery of the altered tissue histology associated with DSS colitis. The OMV-mediated anti-inflammatory effect was clearly associated with an improvement in the altered immune response accompanying DSS-induced colonic damage, thus mimicking the immunomodulatory properties described for this probiotic both <italic>in vivo</italic> and <italic>in vitro</italic> (<xref ref-type="bibr" rid="B33">Kruis et al., 2004</xref>; <xref ref-type="bibr" rid="B22">Grabig et al., 2006</xref>; <xref ref-type="bibr" rid="B4">Arribas et al., 2009</xref>; <xref ref-type="bibr" rid="B21">Garrido-Mesa et al., 2011</xref>; <xref ref-type="bibr" rid="B54">Scaldaferri et al., 2016</xref>). It is known that the acute mucosal inflammation induced by DSS results in activation of several cells involved in the intestinal innate immune response, including epithelial cells, macrophages and dendritic cells, leading to upregulated expression and/or production of pro-inflammatory cytokines, such as IL-1&#x03B2;, TNF-&#x03B1; and IL-6. This subsequently facilitates the sustained inflammatory response associated with an imbalance in Th1/Th17 and Treg cell responses, which results in increased expression and/or production of other cytokines such as IFN-&#x03B3;, IL-12 (Th1) and IL-17 (Th17), together with a reduction in the anti-inflammatory cytokine IL-10 (Treg) (<xref ref-type="bibr" rid="B42">Neurath, 2014</xref>). Our results show that administration of EcN OMVs ameliorates the altered cytokine profile observed in colitic mice treated with DSS.</p>
<p>Different mechanisms could be involved in these immunomodulatory properties. Of particular significance is the ability to restore intestinal epithelial integrity. In this context, it has been reported that the intestinal anti-inflammatory properties of EcN are related to its ability to reinforce TJs of intestinal epithelial cells, thus counteracting the altered permeability status in the intestinal epithelium that characterizes intestinal inflammation (<xref ref-type="bibr" rid="B63">Ukena et al., 2007</xref>). Notably, impairment of the epithelial barrier function has been proposed as one of the first events to occur in intestinal inflammation. This facilitates the access of antigens from the intestinal lumen and triggers the exacerbated immune response. Consequently, rapid promotion of mucosal healing has been considered crucial in the management of intestinal inflammation (<xref ref-type="bibr" rid="B14">Dave and Loftus, 2012</xref>). Under conditions of intact epithelial barrier EcN OMVs (100 &#x03BC;g/ml) upregulate expression of claudin-14 and ZO-1 in T-84 and Caco-2 monolayers (<xref ref-type="bibr" rid="B3">Alvarez et al., 2016</xref>). However, oral administration of EcN OMVs does not prevent DSS-induced downregulation of ZO-1 mRNA. Thus, the effects previously observed in <italic>in vitro</italic> models of intact epithelial barrier are not appreciated in the <italic>in vivo</italic> model of experimental colitis. This suggests that different regulatory mechanisms could be activated by EcN OMVs in the presence of highly expressed inflammatory mediators. Notably, ZO-1 is a target of post-translational modifications that regulate the intracellular fate of this protein. Reinforcement of the epithelial barrier can also be triggered by stimuli that promote ZO-1 location at the cell boundaries, and hence its association with TJ structures. In this context, it has been described that TFF-3 promotes redistribution of ZO-1 from the cytoplasmic compartment to the intercellular junctions in Caco-2 cell monolayers, which results in an increased level of co-localisation with occludin. These regulatory effects were not accompanied by changes in ZO-1 or occludin protein levels (<xref ref-type="bibr" rid="B8">Buda et al., 2012</xref>). Expression of TFF-3 is downregulated in intestinal inflammation (<xref ref-type="bibr" rid="B38">Lozano-P&#x00E9;rez et al., 2014</xref>), as observed in the present study. In connection with this, here we show that EcN OMVs increase colonic expression of this bioactive peptide involved in epithelial protection and repair (<xref ref-type="bibr" rid="B49">Podolsky et al., 2009</xref>), and preserve the damaged colonic cytoarchitecture of the mucosa in colitic mice. In addition to beneficial effects on epithelial integrity restoration, increased expression of TFF-3 can help to ameliorate the altered immune response exerted by EcN OMVs in experimental colitis, since overexpression of this peptide has been reported to abolish the IL-1&#x03B2;-induced upregulation of the pro-inflammatory cytokines IL-6, IL-8 and TNF&#x03B1; (<xref ref-type="bibr" rid="B35">Lin et al., 2013</xref>). Another plausible mechanism exploited by EcN OMVs to protect intestinal barrier function in colitic mice is downregulation of MMP-9 expression. Upregulation of this gelatinase contributes to the pathogenesis of IBD by disrupting TJs between intestinal epithelial cells, leading to increased intestinal permeability and the subsequent pro-inflammatory effects (<xref ref-type="bibr" rid="B43">Nighot et al., 2015</xref>). Moreover, treatment of colitic mice with EcN OMVs tends to increase, or at least preserve, MMP-2 expression, thus protecting against DSS-associated intestinal barrier loss (<xref ref-type="bibr" rid="B19">Garg et al., 2009</xref>).</p>
<p>Other markers of inflammation and tissue damage that are over-expressed in DSS-induced colitis are COX-2 and iNOS (<xref ref-type="bibr" rid="B32">Kolios et al., 2004</xref>). These enzymes are in fact defense mechanisms against the injury, inflammation and infection that occur in pathological conditions, and are highly expressed at damaged sites. Increases in COX-2 levels are seen in chronic intestinal inflammation, which is one of the risk factors for colorectal cancer (<xref ref-type="bibr" rid="B65">Wang and DuBois, 2010</xref>). Expression of iNOS is induced by certain pro-inflammatory cytokines such as TNF-&#x03B1; or IFN-&#x03B3;, as well as by bacterial products. Although increased NO production through upregulation of iNOS is part of the intestinal antibacterial response, excess NO has been associated with intestinal inflammation in IBD patients and attributed to the immune dysregulation that occurs in these intestinal disorders (<xref ref-type="bibr" rid="B32">Kolios et al., 2004</xref>). In fact, elevated iNOS expression has been demonstrated in clinical IBD, caused mainly by infiltrating macrophages in intestinal mucosa (<xref ref-type="bibr" rid="B51">Rachmilewitz et al., 1995</xref>; <xref ref-type="bibr" rid="B47">Palatka et al., 2005</xref>). In addition, excessive NO production mainly through iNOS has been correlated with tissue injury and mucosal lesions observed in both human IBD and DSS-induced colitic mice. Consequently, probiotics or natural compounds with proven efficacy in attenuating colitis in DSS-treated mice reduce iNOS expression (<xref ref-type="bibr" rid="B9">Camuesco et al., 2004</xref>; <xref ref-type="bibr" rid="B20">Garrido-Mesa et al., 2015</xref>; <xref ref-type="bibr" rid="B52">Ren et al., 2015</xref>; <xref ref-type="bibr" rid="B56">Senol et al., 2015</xref>; <xref ref-type="bibr" rid="B64">Utrilla et al., 2015</xref>). EcN is among these probiotics (<xref ref-type="bibr" rid="B21">Garrido-Mesa et al., 2011</xref>). Here we show for the first time the ability of OMVs from a probiotic strain, specifically EcN, to counteract DSS-induced expression of both iNOS and COX-2. This correlates with reduced expression of the pro-inflammatory cytokines TNF-&#x03B1; and IFN-&#x03B3;, and lower inflammatory cell infiltration in OMVs-treated mice.</p>
<p>At present, the molecules in EcN OMVs responsible for the anti-inflammatory and/or barrier protective effects remain unknown. <xref ref-type="bibr" rid="B44">Olier et al. (2012)</xref> reported that the genotoxic polyketide colibactin is required for the <italic>in vivo</italic> anti-inflammatory effects of EcN. Moreover, deficiency in colibactin biosynthesis leads to exacerbation of colitis severity in DSS-treated mice. These facts lead authors to considered colibactin as an immunomodulin. Whether this bacterial effector is exported and delivered into the host cells remains elusive. As EcN OMVs exert anti-inflammatory effects in experimental colitis, we may speculate that colibactin could be secreted through OMVs, at least in part. However, the contribution of other specific probiotic OMV-associated factors cannot be ruled out. Regarding mediators of intestinal barrier protection, it has been shown that the secreted protein TcpC contributes to the <italic>in vitro</italic> strengthening ability of EcN when the epithelial barrier is intact (<xref ref-type="bibr" rid="B25">Hering et al., 2014</xref>). However, the effect of TcpC is not associated with OMVs (<xref ref-type="bibr" rid="B3">Alvarez et al., 2016</xref>). Thus, OMV-linked factors other than TcpC should contribute to the modulation of mucosal healing markers like TFF-3 and MMP-9, observed in this experimental murine colitis model.</p>
</sec>
<sec><title>Conclusion</title>
<p>Recently acquired knowledge shows that microbiota plays an important role in the pathogenesis of IBD; dysbiosis is a common feature of these inflammatory conditions. Nowadays, potential clinical applications of probiotics are being explored to restore microbiota imbalances and take advantage of their health-promoting capacities. However, the translation of probiotics or microbiota-based drugs to human health-care requires deep knowledge of the molecular mechanisms involved in microbiota&#x2013;host interactions (<xref ref-type="bibr" rid="B27">Jia et al., 2008</xref>; <xref ref-type="bibr" rid="B57">Shanahan, 2011</xref>). In this regard, bacterial vesicles are key players in signaling processes in the intestinal mucosa, as they act as a secretion and delivery pathway for selected bacterial proteins and active compounds directly to the host cells. Among probiotics with promising results in IBD clinical assays and experimental colitis models, EcN has beneficial effects on the remission of UC. Our study proves that oral administration of OMVs isolated from this probiotic has intestinal anti-inflammatory effects in the DSS experimental model of colitis, similarly as previously reported for the administration of viable probiotic suspensions. Therefore, OMVs could represent a safe probiotic-derived strategy targeting intestinal inflammatory processes as they are free from bacteria and can elicit the same effect on gastrointestinal health as the probiotic itself.</p>
</sec>
<sec><title>Author Contributions</title>
<p>LB, JG, JB and RG contributed to the conception and design of the study. M-JF and AR-N were the responsible to perform all the experiments and analysis of data. JG, JG-M, and FA contributed to the histological studies. JG, LB, JB, and RG supervised the work, interpreted the data and wrote the drafted manuscript. All the authors revised the manuscript and approved the final version.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This work was funded by the &#x201C;Ministerio de Econom&#x00ED;a y Competitividad&#x201D;, Spain (Grants AGL2012-34985, AGL2016-79113-R (AEI/FEDER, UE) and AGL2015-67995-C3-3-R, all co-financed with European Commission ERDF funds), by the Generalitat de Catalunya, AGAUR (Grant 2014SGR1017), and by the Junta de Andaluc&#x00ED;a (Grant CTS-164). The CIBEREHD is funded by the Instituto de Salud Carlos III. M-JF acknowledges her FPI fellowship from the Spanish Ministry of Economy and Competitiveness. AR-N, FA, and JG-M are postdoctoral fellows of University of Granada.</p>
</fn>
</fn-group>
<ack>
<p>We acknowledge laboratories Ardeypharm for providing strain EcN, and Lucille Banham for assistance in preparing the English manuscript.</p>
</ack>
<ref-list>
<title>References</title>
<ref id="B1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aguilera</surname> <given-names>L.</given-names></name> <name><surname>Toloza</surname> <given-names>L.</given-names></name> <name><surname>Gim&#x00E9;nez</surname> <given-names>R.</given-names></name> <name><surname>Odena</surname> <given-names>A.</given-names></name> <name><surname>Oliveira</surname> <given-names>E.</given-names></name> <name><surname>Aguilar</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2014</year>). <article-title>Proteomic analysis of outer membrane vesicles from the probiotic strain <italic>Escherichia coli</italic> Nissle 1917.</article-title> <source><italic>Proteomics</italic></source> <volume>14</volume> <fpage>222</fpage>&#x2013;<lpage>229</lpage>. <pub-id pub-id-type="doi">10.1002/pmic.201300328</pub-id></citation></ref>
<ref id="B2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Algieri</surname> <given-names>F.</given-names></name> <name><surname>Rodriguez-Nogales</surname> <given-names>A.</given-names></name> <name><surname>Garrido-Mesa</surname> <given-names>N.</given-names></name> <name><surname>Zorrilla</surname> <given-names>P.</given-names></name> <name><surname>Burkard</surname> <given-names>N.</given-names></name> <name><surname>Pischel</surname> <given-names>I.</given-names></name><etal/></person-group> (<year>2014</year>). <article-title>Intestinal anti-inflammatory activity of the <italic>Serpylli herba</italic> extract in experimental models of rodent colitis.</article-title> <source><italic>J. Crohns Colitis</italic></source> <volume>8</volume> <fpage>775</fpage>&#x2013;<lpage>788</lpage>. <pub-id pub-id-type="doi">10.1016/j.crohns.2013.12.012</pub-id></citation></ref>
<ref id="B3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Alvarez</surname> <given-names>C.-S.</given-names></name> <name><surname>Badia</surname> <given-names>J.</given-names></name> <name><surname>Bosch</surname> <given-names>M.</given-names></name> <name><surname>Gim&#x00E9;nez</surname> <given-names>R.</given-names></name> <name><surname>Baldom&#x00E0;</surname> <given-names>L.</given-names></name></person-group> (<year>2016</year>). <article-title>Outer membrane vesicles and soluble factors released by probiotic <italic>Escherichia coli</italic> Nissle 1917 and commensal ECOR63 enhance barrier function by regulating expression of tight junction proteins in intestinal epithelial cells.</article-title> <source><italic>Front. Microbiol.</italic></source> <volume>7</volume>:<issue>1981</issue>. <pub-id pub-id-type="doi">10.3389/fmicb.2016.01981</pub-id></citation></ref>
<ref id="B4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Arribas</surname> <given-names>B.</given-names></name> <name><surname>Rodr&#x00ED;guez-Cabezas</surname> <given-names>M. E.</given-names></name> <name><surname>Camuesco</surname> <given-names>D.</given-names></name> <name><surname>Comalada</surname> <given-names>M.</given-names></name> <name><surname>Bail&#x00F3;n</surname> <given-names>E.</given-names></name> <name><surname>Utrilla</surname> <given-names>P.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>A probiotic strain of <italic>Escherichia coli</italic>, Nissle 1917, given orally exerts local and systemic anti-inflammatory effects in lipopolysaccharide-induced sepsis in mice.</article-title> <source><italic>Br. J. Pharmacol.</italic></source> <volume>157</volume> <fpage>1024</fpage>&#x2013;<lpage>1033</lpage>. <pub-id pub-id-type="doi">10.1111/j.1476-5381.2009.00270.x</pub-id></citation></ref>
<ref id="B5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Becker</surname> <given-names>C.</given-names></name> <name><surname>Neurath</surname> <given-names>M. F.</given-names></name> <name><surname>Wirtz</surname> <given-names>S.</given-names></name></person-group> (<year>2015</year>). <article-title>The intestinal microbiota in inflammatory bowel disease.</article-title> <source><italic>ILAR J.</italic></source> <volume>56</volume> <fpage>192</fpage>&#x2013;<lpage>204</lpage>. <pub-id pub-id-type="doi">10.1093/ilar/ilv030</pub-id></citation></ref>
<ref id="B6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bellaguarda</surname> <given-names>E.</given-names></name> <name><surname>Chang</surname> <given-names>E. B.</given-names></name></person-group> (<year>2015</year>). <article-title>IBD and the gut microbiota&#x2013;from bench to personalized medicine.</article-title> <source><italic>Curr. Gastroenterol. Rep.</italic></source> <volume>17</volume> <issue>15</issue>. <pub-id pub-id-type="doi">10.1007/s11894-015-0439-z</pub-id></citation></ref>
<ref id="B7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bleich</surname> <given-names>A.</given-names></name> <name><surname>Sundberg</surname> <given-names>J. P.</given-names></name> <name><surname>Smoczek</surname> <given-names>A.</given-names></name> <name><surname>von Wasielewski</surname> <given-names>R.</given-names></name> <name><surname>de Buhr</surname> <given-names>M. F.</given-names></name> <name><surname>Janus</surname> <given-names>L. M.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Sensitivity to <italic>Escherichia coli</italic> Nissle 1917 in mice is dependent on environment and genetic background.</article-title> <source><italic>Int. J. Exp. Pathol.</italic></source> <volume>89</volume> <fpage>45</fpage>&#x2013;<lpage>54</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2613.2007.00560.x</pub-id></citation></ref>
<ref id="B8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Buda</surname> <given-names>A.</given-names></name> <name><surname>Jepson</surname> <given-names>M. A.</given-names></name> <name><surname>Pignatelli</surname> <given-names>M.</given-names></name></person-group> (<year>2012</year>). <article-title>Regulatory function of trefoil peptides (TFF) on intestinal cell junctional complexes.</article-title> <source><italic>Cell Commun. Adhes.</italic></source> <volume>19</volume> <fpage>63</fpage>&#x2013;<lpage>68</lpage>. <pub-id pub-id-type="doi">10.3109/15419061.2012.748326</pub-id></citation></ref>
<ref id="B9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Camuesco</surname> <given-names>D.</given-names></name> <name><surname>Comalada</surname> <given-names>M.</given-names></name> <name><surname>Rodr&#x00ED;guez-Cabezas</surname> <given-names>M. E.</given-names></name> <name><surname>Nieto</surname> <given-names>A.</given-names></name> <name><surname>Lorente</surname> <given-names>M. D.</given-names></name> <name><surname>Concha</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2004</year>). <article-title>The intestinal anti-inflammatory effect of quercitrin is associated with an inhibition in iNOS expression.</article-title> <source><italic>Br. J. Pharmacol.</italic></source> <volume>143</volume> <fpage>908</fpage>&#x2013;<lpage>918</lpage>. <pub-id pub-id-type="doi">10.1038/sj.bjp.0705941</pub-id></citation></ref>
<ref id="B10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Camuesco</surname> <given-names>D.</given-names></name> <name><surname>Rodr&#x00ED;guez-Cabezas</surname> <given-names>M. E.</given-names></name> <name><surname>Garrido-Mesa</surname> <given-names>N.</given-names></name> <name><surname>Cueto-Sola</surname> <given-names>M.</given-names></name> <name><surname>Bail&#x00F3;n</surname> <given-names>E.</given-names></name> <name><surname>Comalada</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>The intestinal anti-inflammatory effect of dersalazine sodium is related to a down-regulation in IL-17 production in experimental models of rodent colitis.</article-title> <source><italic>Br. J. Pharmacol.</italic></source> <volume>165</volume> <fpage>729</fpage>&#x2013;<lpage>740</lpage>. <pub-id pub-id-type="doi">10.1111/j.1476-5381.2011.01598.x</pub-id></citation></ref>
<ref id="B11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ca&#x00F1;as</surname> <given-names>M. A.</given-names></name> <name><surname>Gim&#x00E9;nez</surname> <given-names>R.</given-names></name> <name><surname>F&#x00E1;brega</surname> <given-names>M. J.</given-names></name> <name><surname>Toloza</surname> <given-names>L.</given-names></name> <name><surname>Baldom&#x00E0;</surname> <given-names>L.</given-names></name> <name><surname>Badia</surname> <given-names>J.</given-names></name></person-group> (<year>2016</year>). <article-title>Outer membrane vesicles from the probiotic <italic>Escherichia coli</italic> Nissle 1917 and the commensal ECOR12 enter intestinal epithelial cells via clathrin-dependent endocytosis and elicit differential effects on DNA damage.</article-title> <source><italic>PLoS ONE</italic></source> <volume>11</volume>:<issue>e0160374</issue>. <pub-id pub-id-type="doi">10.1371/journal.pone.0160374</pub-id></citation></ref>
<ref id="B12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Claes</surname> <given-names>I. J. J.</given-names></name> <name><surname>De Keersmaecker</surname> <given-names>S. C. J.</given-names></name> <name><surname>Vanderleyden</surname> <given-names>J.</given-names></name> <name><surname>Lebeer</surname> <given-names>S.</given-names></name></person-group> (<year>2011</year>). <article-title>Lessons from probiotic-host interaction studies in murine models of experimental colitis.</article-title> <source><italic>Mol. Nutr. Food Res.</italic></source> <volume>55</volume> <fpage>1441</fpage>&#x2013;<lpage>1453</lpage>. <pub-id pub-id-type="doi">10.1002/mnfr.201100139</pub-id></citation></ref>
<ref id="B13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cooper</surname> <given-names>H. S.</given-names></name> <name><surname>Murthy</surname> <given-names>S. N.</given-names></name> <name><surname>Shah</surname> <given-names>R. S.</given-names></name> <name><surname>Sedergran</surname> <given-names>D. J.</given-names></name></person-group> (<year>1993</year>). <article-title>Clinicopathologic study of dextran sulfate sodium experimental murine colitis.</article-title> <source><italic>Lab. Invest.</italic></source> <volume>69</volume> <fpage>238</fpage>&#x2013;<lpage>249</lpage>.</citation></ref>
<ref id="B14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dave</surname> <given-names>M.</given-names></name> <name><surname>Loftus</surname> <given-names>E. V.</given-names></name></person-group> (<year>2012</year>). <article-title>Mucosal healing in inflammatory bowel disease - A true paradigm of success?</article-title> <source><italic>Gastroenterol. Hepatol.</italic></source> <volume>8</volume> <fpage>29</fpage>&#x2013;<lpage>38</lpage>. <pub-id pub-id-type="doi">10.1136/gutjnl-2012-302830</pub-id></citation></ref>
<ref id="B15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ewaschuk</surname> <given-names>J. B.</given-names></name> <name><surname>Diaz</surname> <given-names>H.</given-names></name> <name><surname>Meddings</surname> <given-names>L.</given-names></name> <name><surname>Diederichs</surname> <given-names>B.</given-names></name> <name><surname>Dmytrash</surname> <given-names>A.</given-names></name> <name><surname>Backer</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Secreted bioactive factors from <italic>Bifidobacterium infantis</italic> enhance epithelial cell barrier function.</article-title> <source><italic>Am. J. Physiol. Gastrointest. Liver Physiol.</italic></source> <volume>295</volume> <fpage>G1025</fpage>&#x2013;<lpage>G1034</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.90227.2008</pub-id></citation></ref>
<ref id="B16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>F&#x00E1;brega</surname> <given-names>M. J.</given-names></name> <name><surname>Aguilera</surname> <given-names>L.</given-names></name> <name><surname>Gim&#x00E9;nez</surname> <given-names>R.</given-names></name> <name><surname>Varela</surname> <given-names>E.</given-names></name> <name><surname>Ca&#x00F1;as</surname> <given-names>M. A.</given-names></name> <name><surname>Antol&#x00ED;n</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Activation of immune and defense responses in the intestinal mucosa by outer membrane vesicles of commensal and probiotic <italic>Escherichia coli</italic> strains.</article-title> <source><italic>Front. Microbiol.</italic></source> <volume>7</volume>:<issue>705</issue>. <pub-id pub-id-type="doi">10.3389/fmicb.2016.00705</pub-id></citation></ref>
<ref id="B17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fedorak</surname> <given-names>R. N.</given-names></name></person-group> (<year>2010</year>). <article-title>Probiotics in the management of ulcerative colitis.</article-title> <source><italic>Gastroenterol. Hepatol.</italic></source> <volume>6</volume> <fpage>688</fpage>&#x2013;<lpage>690</lpage>.</citation></ref>
<ref id="B18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Floch</surname> <given-names>M. H.</given-names></name> <name><surname>Walker</surname> <given-names>W. A.</given-names></name> <name><surname>Madsen</surname> <given-names>K.</given-names></name> <name><surname>Sanders</surname> <given-names>M. E.</given-names></name> <name><surname>Macfarlane</surname> <given-names>G. T.</given-names></name> <name><surname>Flint</surname> <given-names>H. J.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>Recommendations for probiotic use&#x2014;2011 update.</article-title> <source><italic>J. Clin. Gastroenterol.</italic></source> <volume>45</volume> <fpage>S168</fpage>&#x2013;<lpage>S171</lpage>. <pub-id pub-id-type="doi">10.1097/MCG.0b013e318230928b</pub-id></citation></ref>
<ref id="B19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Garg</surname> <given-names>P.</given-names></name> <name><surname>Vijay-Kumar</surname> <given-names>M.</given-names></name> <name><surname>Wang</surname> <given-names>L.</given-names></name> <name><surname>Gewirtz</surname> <given-names>A. T.</given-names></name> <name><surname>Merlin</surname> <given-names>D.</given-names></name> <name><surname>Sitaraman</surname> <given-names>S. V.</given-names></name></person-group> (<year>2009</year>). <article-title>Matrix metalloproteinase-9-mediated tissue injury overrides the protective effect of matrix metalloproteinase-2 during colitis.</article-title> <source><italic>Am. J. Physiol. Gastrointest. Liver Physiol.</italic></source> <volume>296</volume> <fpage>G175</fpage>&#x2013;<lpage>G184</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.90454.2008</pub-id></citation></ref>
<ref id="B20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Garrido-Mesa</surname> <given-names>J.</given-names></name> <name><surname>Algieri</surname> <given-names>F.</given-names></name> <name><surname>Rodriguez-Nogales</surname> <given-names>A.</given-names></name> <name><surname>Utrilla</surname> <given-names>M. P.</given-names></name> <name><surname>Rodriguez-Cabezas</surname> <given-names>M. E.</given-names></name> <name><surname>Zarzuelo</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>A new therapeutic association to manage relapsing experimental colitis: doxycycline plus <italic>Saccharomyces boulardii</italic>.</article-title> <source><italic>Pharmacol. Res.</italic></source> <volume>97</volume> <fpage>48</fpage>&#x2013;<lpage>63</lpage>. <pub-id pub-id-type="doi">10.1016/j.phrs.2015.04.005</pub-id></citation></ref>
<ref id="B21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Garrido-Mesa</surname> <given-names>N.</given-names></name> <name><surname>Utrilla</surname> <given-names>P.</given-names></name> <name><surname>Comalada</surname> <given-names>M.</given-names></name> <name><surname>Zorrilla</surname> <given-names>P.</given-names></name> <name><surname>Garrido-Mesa</surname> <given-names>J.</given-names></name> <name><surname>Zarzuelo</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>The association of minocycline and the probiotic <italic>Escherichia coli</italic> Nissle 1917 results in an additive beneficial effect in a DSS model of reactivated colitis in mice.</article-title> <source><italic>Biochem. Pharmacol.</italic></source> <volume>82</volume> <fpage>1891</fpage>&#x2013;<lpage>1900</lpage>. <pub-id pub-id-type="doi">10.1016/j.bcp.2011.09.004</pub-id></citation></ref>
<ref id="B22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Grabig</surname> <given-names>A.</given-names></name> <name><surname>Paclik</surname> <given-names>D.</given-names></name> <name><surname>Guzy</surname> <given-names>C.</given-names></name> <name><surname>Dankof</surname> <given-names>A.</given-names></name> <name><surname>Baumgart</surname> <given-names>D. C.</given-names></name> <name><surname>Erckenbrecht</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title><italic>Escherichia coli</italic> strain Nissle 1917 ameliorates experimental colitis via toll-like receptor 2- and toll-like receptor 4-dependent pathways.</article-title> <source><italic>Infect. Immun.</italic></source> <volume>74</volume> <fpage>4075</fpage>&#x2013;<lpage>4082</lpage>. <pub-id pub-id-type="doi">10.1128/IAI.01449-05</pub-id></citation></ref>
<ref id="B23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gronbach</surname> <given-names>K.</given-names></name> <name><surname>Eberle</surname> <given-names>U.</given-names></name> <name><surname>M&#x00FC;ller</surname> <given-names>M.</given-names></name> <name><surname>Olschal&#x00E4;ger</surname> <given-names>T. A.</given-names></name> <name><surname>Dobrindt</surname> <given-names>U.</given-names></name> <name><surname>Leith&#x00E4;user</surname> <given-names>F.</given-names></name><etal/></person-group> (<year>2010</year>). <article-title>Safety of probiotic <italic>Escherichia coli</italic> strain Nissle 1917 depends on intestinal microbiota and adaptive immunity of the host.</article-title> <source><italic>Infect. Immun.</italic></source> <volume>78</volume> <fpage>3036</fpage>&#x2013;<lpage>3046</lpage>. <pub-id pub-id-type="doi">10.1128/IAI.00218-10</pub-id></citation></ref>
<ref id="B24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Guzy</surname> <given-names>C.</given-names></name> <name><surname>Paclik</surname> <given-names>D.</given-names></name> <name><surname>Schirbel</surname> <given-names>A.</given-names></name> <name><surname>Sonnenborn</surname> <given-names>U.</given-names></name> <name><surname>Wiedenmann</surname> <given-names>B.</given-names></name> <name><surname>Sturm</surname> <given-names>A.</given-names></name></person-group> (<year>2008</year>). <article-title>The probiotic <italic>Escherichia coli</italic> strain Nissle 1917 induces T cell apoptosis via caspase- and FasL-dependent pathways.</article-title> <source><italic>Int. Immunol.</italic></source> <volume>20</volume> <fpage>829</fpage>&#x2013;<lpage>840</lpage>. <pub-id pub-id-type="doi">10.1093/intimm/dxn041</pub-id></citation></ref>
<ref id="B25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hering</surname> <given-names>N. A.</given-names></name> <name><surname>Richter</surname> <given-names>J. F.</given-names></name> <name><surname>Fromm</surname> <given-names>A.</given-names></name> <name><surname>Wieser</surname> <given-names>A.</given-names></name> <name><surname>Hartmann</surname> <given-names>S.</given-names></name> <name><surname>G&#x00FC;nzel</surname> <given-names>D.</given-names></name><etal/></person-group> (<year>2014</year>). <article-title>TcpC protein from <italic>E. coli</italic> Nissle improves epithelial barrier function involving PKC&#x03B6; and ERK1/2 signaling in HT-29/B6 cells.</article-title> <source><italic>Mucosal Immunol.</italic></source> <volume>7</volume> <fpage>369</fpage>&#x2013;<lpage>378</lpage>. <pub-id pub-id-type="doi">10.1038/mi.2013.55</pub-id></citation></ref>
<ref id="B26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hou</surname> <given-names>Y. C.</given-names></name> <name><surname>Wu</surname> <given-names>J. M.</given-names></name> <name><surname>Wang</surname> <given-names>M. Y.</given-names></name> <name><surname>Wu</surname> <given-names>M. H.</given-names></name> <name><surname>Chen</surname> <given-names>K. Y.</given-names></name> <name><surname>Yeh</surname> <given-names>S. L.</given-names></name><etal/></person-group> (<year>2014</year>). <article-title>Glutamine supplementation attenuates expressions of adhesion molecules and chemokine receptors on T cells in a murine model of acute colitis.</article-title> <source><italic>Mediators Inflamm.</italic></source> <volume>2014</volume>:<issue>837107</issue>. <pub-id pub-id-type="doi">10.1155/2014/837107</pub-id></citation></ref>
<ref id="B27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jia</surname> <given-names>W.</given-names></name> <name><surname>Li</surname> <given-names>H.</given-names></name> <name><surname>Zhao</surname> <given-names>L.</given-names></name> <name><surname>Nicholson</surname> <given-names>J. K.</given-names></name></person-group> (<year>2008</year>). <article-title>Gut microbiota: a potential new territory for drug targeting.</article-title> <source><italic>Nat. Rev. Drug Discov.</italic></source> <volume>7</volume> <fpage>123</fpage>&#x2013;<lpage>129</lpage>. <pub-id pub-id-type="doi">10.1038/nrd2505</pub-id></citation></ref>
<ref id="B28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jiminez</surname> <given-names>J. A.</given-names></name> <name><surname>Uwiera</surname> <given-names>T. C.</given-names></name> <name><surname>Douglas Inglis</surname> <given-names>G.</given-names></name> <name><surname>Uwiera</surname> <given-names>R. R. E.</given-names></name></person-group> (<year>2015</year>). <article-title>Animal models to study acute and chronic intestinal inflammation in mammals.</article-title> <source><italic>Gut Pathog.</italic></source> <volume>7</volume> <issue>29</issue>. <pub-id pub-id-type="doi">10.1186/s13099-015-0076-y</pub-id></citation></ref>
<ref id="B29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kang</surname> <given-names>C. S.</given-names></name> <name><surname>Ban</surname> <given-names>M.</given-names></name> <name><surname>Choi</surname> <given-names>E. J.</given-names></name> <name><surname>Moon</surname> <given-names>H. G.</given-names></name> <name><surname>Jeon</surname> <given-names>J. S.</given-names></name> <name><surname>Kim</surname> <given-names>D. K.</given-names></name><etal/></person-group> (<year>2013</year>). <article-title>Extracellular vesicles derived from gut microbiota, especially <italic>Akkermansia muciniphila</italic>, protect the progression of dextran sulfate sodium-induced colitis.</article-title> <source><italic>PLoS ONE</italic></source> <volume>8</volume>:<issue>e76520</issue>. <pub-id pub-id-type="doi">10.1371/journal.pone.0076520</pub-id></citation></ref>
<ref id="B30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kaparakis-Liaskos</surname> <given-names>M.</given-names></name> <name><surname>Ferrero</surname> <given-names>R. L.</given-names></name></person-group> (<year>2015</year>). <article-title>Immune modulation by bacterial outer membrane vesicles.</article-title> <source><italic>Nat. Rev. Immunol.</italic></source> <volume>15</volume> <fpage>375</fpage>&#x2013;<lpage>387</lpage>. <pub-id pub-id-type="doi">10.1038/nri3837</pub-id></citation></ref>
<ref id="B31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ko</surname> <given-names>J. K.</given-names></name> <name><surname>Auyeung</surname> <given-names>K. K.</given-names></name></person-group> (<year>2014</year>). <article-title>Inflammatory bowel disease: etiology, pathogenesis and current therapy.</article-title> <source><italic>Curr. Pharm. Des.</italic></source> <volume>20</volume> <fpage>1082</fpage>&#x2013;<lpage>1096</lpage>. <pub-id pub-id-type="doi">10.2174/13816128113199990416</pub-id></citation></ref>
<ref id="B32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kolios</surname> <given-names>G.</given-names></name> <name><surname>Valatas</surname> <given-names>V.</given-names></name> <name><surname>Ward</surname> <given-names>S. G.</given-names></name></person-group> (<year>2004</year>). <article-title>Nitric oxide in inflammatory bowel disease: a universal messenger in an unsolved puzzle.</article-title> <source><italic>Immunology</italic></source> <volume>113</volume> <fpage>427</fpage>&#x2013;<lpage>437</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2567.2004.01984.x</pub-id></citation></ref>
<ref id="B33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kruis</surname> <given-names>W.</given-names></name> <name><surname>Fri&#x010D;</surname> <given-names>P.</given-names></name> <name><surname>Pokrotnieks</surname> <given-names>J.</given-names></name> <name><surname>Luk&#x00E1;&#x0161;</surname> <given-names>M.</given-names></name> <name><surname>Fixa</surname> <given-names>B.</given-names></name> <name><surname>Ka&#x0161;&#x010D;&#x00E1;k</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2004</year>). <article-title>Maintaining remission of ulcerative colitis with the probiotic <italic>Escherichia coli</italic> Nissle 1917 is as effective as with standard mesalazine.</article-title> <source><italic>Gut</italic></source> <volume>53</volume> <fpage>1617</fpage>&#x2013;<lpage>1623</lpage>. <pub-id pub-id-type="doi">10.1136/gut.2003.037747</pub-id></citation></ref>
<ref id="B34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ledoux</surname> <given-names>D.</given-names></name> <name><surname>Labombardi</surname> <given-names>V. J.</given-names></name> <name><surname>Karter</surname> <given-names>D.</given-names></name></person-group> (<year>2006</year>). <article-title><italic>Lactobacillus acidophilus</italic> bacteraemia after use of a probiotic in a patient with AIDS and Hodgkin&#x2019;s disease.</article-title> <source><italic>Int. J. STD AIDS</italic></source> <volume>17</volume> <fpage>280</fpage>&#x2013;<lpage>282</lpage>. <pub-id pub-id-type="doi">10.1258/095646206776253507</pub-id></citation></ref>
<ref id="B35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lin</surname> <given-names>N.</given-names></name> <name><surname>Xu</surname> <given-names>L. F.</given-names></name> <name><surname>Sun</surname> <given-names>M.</given-names></name></person-group> (<year>2013</year>). <article-title>The protective effect of trefoil factor 3 on the intestinal tight junction barrier is mediated by toll-like receptor 2 via a PI3K/Akt dependent mechanism.</article-title> <source><italic>Biochem. Biophys. Res. Commun.</italic></source> <volume>440</volume> <fpage>143</fpage>&#x2013;<lpage>149</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbrc.2013.09.049</pub-id></citation></ref>
<ref id="B36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>xLosurdo</surname> <given-names>G.</given-names></name> <name><surname>Iannone</surname> <given-names>A.</given-names></name> <name><surname>Contaldo</surname> <given-names>A.</given-names></name> <name><surname>Ierardi</surname> <given-names>E.</given-names></name> <name><surname>Di Leo</surname> <given-names>A.</given-names></name> <name><surname>Principi</surname> <given-names>M.</given-names></name></person-group> (<year>2015</year>). <article-title><italic>Escherichia coli</italic> Nissle 1917 in ulcerative colitis treatment: systematic review and meta-analysis.</article-title> <source><italic>J. Gastrointestin. Liver Dis.</italic></source> <volume>24</volume> <fpage>499</fpage>&#x2013;<lpage>505</lpage>. <pub-id pub-id-type="doi">10.15403/jgld.2014.1121.244.ecn</pub-id></citation></ref>
<ref id="B37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lowry</surname> <given-names>O. H.</given-names></name> <name><surname>Rosebrough</surname> <given-names>N. J.</given-names></name> <name><surname>Farr</surname> <given-names>A. L.</given-names></name> <name><surname>Randall</surname> <given-names>R. J.</given-names></name></person-group> (<year>1951</year>). <article-title>Protein measurement with the Folin phenol reagent.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>193</volume> <fpage>265</fpage>&#x2013;<lpage>275</lpage>.</citation></ref>
<ref id="B38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lozano-P&#x00E9;rez</surname> <given-names>A. A.</given-names></name> <name><surname>Ortiz-cullera</surname> <given-names>V.</given-names></name> <name><surname>Zorrilla</surname> <given-names>P.</given-names></name> <name><surname>Rodriguez-Cabezas</surname> <given-names>M. E.</given-names></name> <name><surname>Cenis</surname> <given-names>J. L.</given-names></name></person-group> (<year>2014</year>). <article-title>Silk fibroin nanoparticles constitute a vector for controlled release of resveratrol in an experimental model of inflammatory bowel disease in rats.</article-title> <source><italic>Int. J. Nanomed.</italic></source> <volume>9</volume> <fpage>4507</fpage>&#x2013;<lpage>4520</lpage>. <pub-id pub-id-type="doi">10.2147/IJN.S68526</pub-id></citation></ref>
<ref id="B39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>M&#x00E4;hler</surname> <given-names>M.</given-names></name> <name><surname>Bristol</surname> <given-names>I. J.</given-names></name> <name><surname>Leiter</surname> <given-names>E. H.</given-names></name> <name><surname>Workman</surname> <given-names>A. E.</given-names></name> <name><surname>Birkenmeier</surname> <given-names>E. H.</given-names></name> <name><surname>Elson</surname> <given-names>C. O.</given-names></name><etal/></person-group> (<year>1998</year>). <article-title>Differential susceptibility of inbred mouse strains to dextran sulfate sodium-induced colitis.</article-title> <source><italic>Am. J. Physiol.</italic></source> <volume>274</volume> <fpage>G544</fpage>&#x2013;<lpage>G551</lpage>.</citation></ref>
<ref id="B40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Manichanh</surname> <given-names>C.</given-names></name> <name><surname>Borruel</surname> <given-names>N.</given-names></name> <name><surname>Casellas</surname> <given-names>F.</given-names></name> <name><surname>Guarner</surname> <given-names>F.</given-names></name></person-group> (<year>2012</year>). <article-title>The gut microbiota in IBD.</article-title> <source><italic>Nat. Rev. Gastroenterol. Hepatol.</italic></source> <volume>9</volume> <fpage>599</fpage>&#x2013;<lpage>608</lpage>. <pub-id pub-id-type="doi">10.1038/nrgastro.2012.152</pub-id></citation></ref>
<ref id="B41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mart&#x00ED;n</surname> <given-names>R.</given-names></name> <name><surname>Miquel</surname> <given-names>S.</given-names></name> <name><surname>Chain</surname> <given-names>F.</given-names></name> <name><surname>Natividad</surname> <given-names>J. M.</given-names></name> <name><surname>Jury</surname> <given-names>J.</given-names></name> <name><surname>Lu</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title><italic>Faecalibacterium prausnitzii</italic> prevents physiological damages in a chronic low-grade inflammation murine model.</article-title> <source><italic>BMC Microbiol.</italic></source> <volume>15</volume>:<issue>67</issue>. <pub-id pub-id-type="doi">10.1186/s12866-015-0400-1</pub-id></citation></ref>
<ref id="B42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Neurath</surname> <given-names>M. F.</given-names></name></person-group> (<year>2014</year>). <article-title>Cytokines in inflammatory bowel disease.</article-title> <source><italic>Nat. Rev. Immunol.</italic></source> <volume>14</volume> <fpage>329</fpage>&#x2013;<lpage>342</lpage>. <pub-id pub-id-type="doi">10.1038/nri3661</pub-id></citation></ref>
<ref id="B43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nighot</surname> <given-names>P. K.</given-names></name> <name><surname>Al-Sadi</surname> <given-names>R.</given-names></name> <name><surname>Rawat</surname> <given-names>M.</given-names></name> <name><surname>Guo</surname> <given-names>S.</given-names></name> <name><surname>Watterson</surname> <given-names>D. M.</given-names></name> <name><surname>Ma</surname> <given-names>T. Y.</given-names></name></person-group> (<year>2015</year>). <article-title>Matrix Metalloproteinase 9-induced increase in intestinal epithelial tight junction permeability contributes to the severity of experimental DSS colitis.</article-title> <source><italic>Am. J. Physiol. Gastrointest. Liver Physiol.</italic></source> <volume>309</volume> <fpage>G988</fpage>&#x2013;<lpage>G997</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00256.2015</pub-id></citation></ref>
<ref id="B44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Olier</surname> <given-names>M.</given-names></name> <name><surname>Marcq</surname> <given-names>I.</given-names></name> <name><surname>Salvador-Cartier</surname> <given-names>C.</given-names></name> <name><surname>Secher</surname> <given-names>T.</given-names></name> <name><surname>Dobrindt</surname> <given-names>U.</given-names></name> <name><surname>Boury</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Genotoxicity of <italic>Escherichia coli</italic> Nissle 1917 strain cannot be dissociated from its probiotic activity.</article-title> <source><italic>Gut Microbes</italic></source> <volume>3</volume> <fpage>501</fpage>&#x2013;<lpage>509</lpage>. <pub-id pub-id-type="doi">10.4161/gmic.21737</pub-id></citation></ref>
<ref id="B45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Olsen</surname> <given-names>I.</given-names></name> <name><surname>Amano</surname> <given-names>A.</given-names></name></person-group> (<year>2015</year>). <article-title>Outer membrane vesicles - offensive weapons or good samaritans?</article-title> <source><italic>J. Oral Microbiol.</italic></source> <volume>7</volume>:<issue>27468</issue>. <pub-id pub-id-type="doi">10.3402/jom.v7.27468</pub-id></citation></ref>
<ref id="B46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ott</surname> <given-names>S. J.</given-names></name> <name><surname>Musfeldt</surname> <given-names>M.</given-names></name> <name><surname>Wenderoth</surname> <given-names>D. F.</given-names></name> <name><surname>Hampe</surname> <given-names>J.</given-names></name> <name><surname>Brant</surname> <given-names>O.</given-names></name> <name><surname>F&#x00F6;lsch</surname> <given-names>U. R.</given-names></name><etal/></person-group> (<year>2004</year>). <article-title>Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease.</article-title> <source><italic>Gut</italic></source> <volume>53</volume> <fpage>685</fpage>&#x2013;<lpage>693</lpage>. <pub-id pub-id-type="doi">10.1136/gut.2003.025403</pub-id></citation></ref>
<ref id="B47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Palatka</surname> <given-names>K.</given-names></name> <name><surname>Serf&#x0151;z&#x0151;</surname> <given-names>Z.</given-names></name> <name><surname>Ver&#x00E9;b</surname> <given-names>Z.</given-names></name> <name><surname>Hargitay</surname> <given-names>Z.</given-names></name> <name><surname>Lontay</surname> <given-names>B.</given-names></name> <name><surname>Erd&#x0151;di</surname> <given-names>F.</given-names></name><etal/></person-group> (<year>2005</year>). <article-title>Changes in the expression and distribution of the inducible and endothelial nitric oxide synthase in mucosal biopsy specimens of inflammatory bowel disease.</article-title> <source><italic>Scand. J. Gastroenterol.</italic></source> <volume>40</volume> <fpage>670</fpage>&#x2013;<lpage>680</lpage>. <pub-id pub-id-type="doi">10.1080/00365520510015539</pub-id></citation></ref>
<ref id="B48"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pandurangan</surname> <given-names>A. K.</given-names></name> <name><surname>Ismail</surname> <given-names>S.</given-names></name> <name><surname>Saadatdoust</surname> <given-names>Z.</given-names></name> <name><surname>Esa</surname> <given-names>N. M.</given-names></name></person-group> (<year>2015</year>). <article-title>Allicin alleviates dextran sodium sulfate- (DSS-) induced ulcerative colitis in BALB/c mice.</article-title> <source><italic>Oxid. Med. Cell. Longev.</italic></source> <volume>2015</volume>:<issue>605208</issue>. <pub-id pub-id-type="doi">10.1155/2015/605208</pub-id></citation></ref>
<ref id="B49"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Podolsky</surname> <given-names>D. K.</given-names></name> <name><surname>Gerken</surname> <given-names>G.</given-names></name> <name><surname>Eyking</surname> <given-names>A.</given-names></name> <name><surname>Cario</surname> <given-names>E.</given-names></name></person-group> (<year>2009</year>). <article-title>Colitis-associated variant of TLR2 causes impaired mucosal repair because of TFF3 deficiency.</article-title> <source><italic>Gastroenterology</italic></source> <volume>137</volume> <fpage>209</fpage>&#x2013;<lpage>220</lpage>. <pub-id pub-id-type="doi">10.1053/j.gastro.2009.03.007</pub-id></citation></ref>
<ref id="B50"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Qiao</surname> <given-names>Y. Q.</given-names></name> <name><surname>Cai</surname> <given-names>C. W.</given-names></name> <name><surname>Ran</surname> <given-names>Z. H.</given-names></name></person-group> (<year>2016</year>). <article-title>Therapeutic modulation of gut microbiota in inflammatory bowel disease: more questions to be answered.</article-title> <source><italic>J. Dig. Dis.</italic></source> <volume>17</volume> <fpage>800</fpage>&#x2013;<lpage>810</lpage>. <pub-id pub-id-type="doi">10.1111/1751-2980.12422</pub-id></citation></ref>
<ref id="B51"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rachmilewitz</surname> <given-names>D.</given-names></name> <name><surname>Stamler</surname> <given-names>J. S.</given-names></name> <name><surname>Bachwich</surname> <given-names>D.</given-names></name> <name><surname>Karmeli</surname> <given-names>F.</given-names></name> <name><surname>Ackerman</surname> <given-names>Z.</given-names></name> <name><surname>Podolsky</surname> <given-names>D. K.</given-names></name></person-group> (<year>1995</year>). <article-title>Enhanced colonic nitric oxide generation and nitric oxide synthase activity in ulcerative colitis and Crohn&#x2019;s disease.</article-title> <source><italic>Gut</italic></source> <volume>36</volume> <fpage>718</fpage>&#x2013;<lpage>723</lpage>. <pub-id pub-id-type="doi">10.1136/gut.36.5.718</pub-id></citation></ref>
<ref id="B52"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ren</surname> <given-names>G.</given-names></name> <name><surname>Sun</surname> <given-names>A.</given-names></name> <name><surname>Deng</surname> <given-names>C.</given-names></name> <name><surname>Zhang</surname> <given-names>J.</given-names></name> <name><surname>Wu</surname> <given-names>X.</given-names></name> <name><surname>Wei</surname> <given-names>X.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>The anti-inflammatory effect and potential mechanism of cardamonin in DSS-induced colitis.</article-title> <source><italic>Am. J. Physiol. Gastrointest. Liver Physiol.</italic></source> <volume>309</volume> <fpage>G517</fpage>&#x2013;<lpage>G527</lpage>. <pub-id pub-id-type="doi">10.1152/ajpgi.00133.2015</pub-id></citation></ref>
<ref id="B53"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sassone-Corsi</surname> <given-names>M.</given-names></name> <name><surname>Nuccio</surname> <given-names>S.-P.</given-names></name> <name><surname>Liu</surname> <given-names>H.</given-names></name> <name><surname>Hernandez</surname> <given-names>D.</given-names></name> <name><surname>Vu</surname> <given-names>C. T.</given-names></name> <name><surname>Takahashi</surname> <given-names>A. A.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Microcins mediate competition among Enterobacteriaceae in the inflamed gut.</article-title> <source><italic>Nature</italic></source> <volume>540</volume> <fpage>280</fpage>&#x2013;<lpage>283</lpage>. <pub-id pub-id-type="doi">10.1038/nature20557</pub-id></citation></ref>
<ref id="B54"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Scaldaferri</surname> <given-names>F.</given-names></name> <name><surname>Gerardi</surname> <given-names>V.</given-names></name> <name><surname>Mangiola</surname> <given-names>F.</given-names></name> <name><surname>Lopetuso</surname> <given-names>L. R.</given-names></name> <name><surname>Pizzoferrato</surname> <given-names>M.</given-names></name> <name><surname>Petito</surname> <given-names>V.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Role and mechanisms of action of <italic>Escherichia coli</italic> Nissle 1917 in the maintenance of remission in ulcerative colitis patients: an update.</article-title> <source><italic>World J. Gastroenterol.</italic></source> <volume>22</volume> <fpage>5505</fpage>&#x2013;<lpage>5511</lpage>. <pub-id pub-id-type="doi">10.3748/wjg.v22.i24.5505</pub-id></citation></ref>
<ref id="B55"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schlee</surname> <given-names>M.</given-names></name> <name><surname>Wehkamp</surname> <given-names>J.</given-names></name> <name><surname>Altenhoefer</surname> <given-names>A.</given-names></name> <name><surname>Oelschlaeger</surname> <given-names>T. A.</given-names></name> <name><surname>Stange</surname> <given-names>E. F.</given-names></name> <name><surname>Fellermann</surname> <given-names>K.</given-names></name></person-group> (<year>2007</year>). <article-title>Induction of human &#x03B2;-defensin 2 by the probiotic <italic>Escherichia coli</italic> Nissle 1917 is mediated through flagellin.</article-title> <source><italic>Infect. Immun.</italic></source> <volume>75</volume> <fpage>2399</fpage>&#x2013;<lpage>2407</lpage>. <pub-id pub-id-type="doi">10.1128/IAI.01563-06</pub-id></citation></ref>
<ref id="B56"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Senol</surname> <given-names>A.</given-names></name> <name><surname>Isler</surname> <given-names>M.</given-names></name> <name><surname>Sutcu</surname> <given-names>R.</given-names></name> <name><surname>Akin</surname> <given-names>M.</given-names></name> <name><surname>Cakir</surname> <given-names>E.</given-names></name> <name><surname>Ceyhan</surname> <given-names>B. M.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Kefir treatment ameliorates dextran sulfate sodium-induced colitis in rats.</article-title> <source><italic>World J. Gastroenterol.</italic></source> <volume>21</volume> <fpage>13020</fpage>&#x2013;<lpage>13029</lpage>. <pub-id pub-id-type="doi">10.3748/wjg.v21.i46.13020</pub-id></citation></ref>
<ref id="B57"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shanahan</surname> <given-names>F.</given-names></name></person-group> (<year>2011</year>). <article-title>The colonic microflora and probiotic therapy in health and disease.</article-title> <source><italic>Curr. Opin. Gastroenterol.</italic></source> <volume>27</volume> <fpage>61</fpage>&#x2013;<lpage>65</lpage>. <pub-id pub-id-type="doi">10.1097/MOG.0b013e328340076f</pub-id></citation></ref>
<ref id="B58"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shen</surname> <given-names>Y.</given-names></name> <name><surname>Torchia</surname> <given-names>M. L. G.</given-names></name> <name><surname>Lawson</surname> <given-names>G. W.</given-names></name> <name><surname>Karp</surname> <given-names>C. L.</given-names></name> <name><surname>Ashwell</surname> <given-names>J. D.</given-names></name> <name><surname>Mazmanian</surname> <given-names>S. K.</given-names></name></person-group> (<year>2012</year>). <article-title>Outer membrane vesicles of a human commensal mediate immune regulation and disease protection.</article-title> <source><italic>Cell Host Microbe</italic></source> <volume>12</volume> <fpage>509</fpage>&#x2013;<lpage>520</lpage>. <pub-id pub-id-type="doi">10.1016/j.chom.2012.08.004</pub-id></citation></ref>
<ref id="B59"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sokol</surname> <given-names>H.</given-names></name> <name><surname>Pigneur</surname> <given-names>B.</given-names></name> <name><surname>Watterlot</surname> <given-names>L.</given-names></name> <name><surname>Lakhdari</surname> <given-names>O.</given-names></name> <name><surname>Berm&#x00FA;dez-Humar&#x00E1;n</surname> <given-names>L. G.</given-names></name> <name><surname>Gratadoux</surname> <given-names>J.-J.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title><italic>Faecalibacterium prausnitzii</italic> is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>105</volume> <fpage>16731</fpage>&#x2013;<lpage>16736</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.0804812105</pub-id></citation></ref>
<ref id="B60"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Souza</surname> <given-names>B. M.</given-names></name> <name><surname>Preisser</surname> <given-names>T. M.</given-names></name> <name><surname>Pereira</surname> <given-names>V. B.</given-names></name> <name><surname>Zurita-Turk</surname> <given-names>M.</given-names></name> <name><surname>de Castro</surname> <given-names>C. P.</given-names></name> <name><surname>da Cunha</surname> <given-names>V. P.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title><italic>Lactococcus lactis</italic> carrying the pValac eukaryotic expression vector coding for IL-4 reduces chemically-induced intestinal inflammation by increasing the levels of IL-10-producing regulatory cells.</article-title> <source><italic>Microb. Cell Fact.</italic></source> <volume>15</volume> <issue>150</issue>. <pub-id pub-id-type="doi">10.1186/s12934-016-0548-x</pub-id></citation></ref>
<ref id="B61"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sturm</surname> <given-names>A.</given-names></name> <name><surname>Rilling</surname> <given-names>K.</given-names></name> <name><surname>Baumgart</surname> <given-names>D. C.</given-names></name> <name><surname>Gargas</surname> <given-names>K.</given-names></name> <name><surname>Abou-Ghazal&#x00E9;</surname> <given-names>T.</given-names></name> <name><surname>Raupach</surname> <given-names>B.</given-names></name><etal/></person-group> (<year>2005</year>). <article-title><italic>Escherichia coli</italic> Nissle 1917 distinctively modulates T-cell cycling and expansion via toll-like receptor 2 signaling.</article-title> <source><italic>Infect. Immun.</italic></source> <volume>73</volume> <fpage>1452</fpage>&#x2013;<lpage>1465</lpage>. <pub-id pub-id-type="doi">10.1128/IAI.73.3.1452-1465.2005</pub-id></citation></ref>
<ref id="B62"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Trebichavsky</surname> <given-names>I.</given-names></name> <name><surname>Splichal</surname> <given-names>I.</given-names></name> <name><surname>Rada</surname> <given-names>V.</given-names></name> <name><surname>Splichalova</surname> <given-names>A.</given-names></name></person-group> (<year>2010</year>). <article-title>Modulation of natural immunity in the gut by <italic>Escherichia coli</italic> strain Nissle 1917.</article-title> <source><italic>Nutr. Rev.</italic></source> <volume>68</volume> <fpage>459</fpage>&#x2013;<lpage>464</lpage>. <pub-id pub-id-type="doi">10.1111/j.1753-4887.2010.00305.x</pub-id></citation></ref>
<ref id="B63"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ukena</surname> <given-names>S. N.</given-names></name> <name><surname>Singh</surname> <given-names>A.</given-names></name> <name><surname>Dringenberg</surname> <given-names>U.</given-names></name> <name><surname>Engelhardt</surname> <given-names>R.</given-names></name> <name><surname>Seidler</surname> <given-names>U.</given-names></name> <name><surname>Hansen</surname> <given-names>W.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Probiotic <italic>Escherichia coli</italic> Nissle 1917 inhibits leaky gut by enhancing mucosal integrity.</article-title> <source><italic>PLoS ONE</italic></source> <volume>2</volume>:<issue>e1308</issue>. <pub-id pub-id-type="doi">10.1371/journal.pone.0001308</pub-id></citation></ref>
<ref id="B64"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Utrilla</surname> <given-names>M. P.</given-names></name> <name><surname>Peinado</surname> <given-names>M. J.</given-names></name> <name><surname>Ruiz</surname> <given-names>R.</given-names></name> <name><surname>Rodriguez-Nogales</surname> <given-names>A.</given-names></name> <name><surname>Algieri</surname> <given-names>F.</given-names></name> <name><surname>Rodriguez-Cabezas</surname> <given-names>M. E.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Pea (<italic>Pisum sativum</italic> L.) seed albumin extracts show anti-inflammatory effect in the DSS model of mouse colitis.</article-title> <source><italic>Mol. Nutr. Food Res.</italic></source> <volume>59</volume> <fpage>807</fpage>&#x2013;<lpage>819</lpage>. <pub-id pub-id-type="doi">10.1002/mnfr.201400630</pub-id></citation></ref>
<ref id="B65"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>D.</given-names></name> <name><surname>DuBois</surname> <given-names>R. N.</given-names></name></person-group> (<year>2010</year>). <article-title>The role of COX-2 in intestinal inflammation and colorectal cancer.</article-title> <source><italic>Oncogene</italic></source> <volume>9</volume> <fpage>781</fpage>&#x2013;<lpage>788</lpage>. <pub-id pub-id-type="doi">10.1038/onc.2009.421</pub-id></citation></ref>
<ref id="B66"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wasilewski</surname> <given-names>A.</given-names></name> <name><surname>Zieli&#x0144;ska</surname> <given-names>M.</given-names></name> <name><surname>Storr</surname> <given-names>M.</given-names></name> <name><surname>Fichna</surname> <given-names>J.</given-names></name></person-group> (<year>2015</year>). <article-title>Beneficial effects of probiotics, prebiotics, synbiotics, and psychobiotics in inflammatory bowel disease.</article-title> <source><italic>Inflamm. Bowel Dis.</italic></source> <volume>21</volume> <fpage>1674</fpage>&#x2013;<lpage>1682</lpage>. <pub-id pub-id-type="doi">10.1097/MIB.0000000000000364</pub-id></citation></ref>
<ref id="B67"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xu</surname> <given-names>X.-R.</given-names></name> <name><surname>Liu</surname> <given-names>C.-Q.</given-names></name> <name><surname>Feng</surname> <given-names>B.-S.</given-names></name> <name><surname>Liu</surname> <given-names>Z.-J.</given-names></name></person-group> (<year>2014</year>). <article-title>Dysregulation of mucosal immune response in pathogenesis of inflammatory bowel disease.</article-title> <source><italic>World J. Gastroenterol.</italic></source> <volume>20</volume> <fpage>3255</fpage>&#x2013;<lpage>3264</lpage>. <pub-id pub-id-type="doi">10.3748/wjg.v20.i12.3255</pub-id></citation></ref>
<ref id="B68"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>Y.-Z.</given-names></name> <name><surname>Li</surname> <given-names>Y.-Y.</given-names></name></person-group> (<year>2014</year>). <article-title>Inflammatory bowel disease: pathogenesis.</article-title> <source><italic>World J. Gastroenterol.</italic></source> <volume>20</volume> <fpage>91</fpage>&#x2013;<lpage>99</lpage>. <pub-id pub-id-type="doi">10.3748/wjg.v20.i1.91</pub-id></citation></ref>
<ref id="B69"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zyrek</surname> <given-names>A. A.</given-names></name> <name><surname>Cichon</surname> <given-names>C.</given-names></name> <name><surname>Helms</surname> <given-names>S.</given-names></name> <name><surname>Enders</surname> <given-names>C.</given-names></name> <name><surname>Sonnenborn</surname> <given-names>U.</given-names></name> <name><surname>Schmidt</surname> <given-names>M. A.</given-names></name></person-group> (<year>2007</year>). <article-title>Molecular mechanisms underlying the probiotic effects of <italic>Escherichia coli</italic> Nissle 1917 involve ZO-2 and PKCzeta redistribution resulting in tight junction and epithelial barrier repair.</article-title> <source><italic>Cell. Microbiol.</italic></source> <volume>9</volume> <fpage>804</fpage>&#x2013;<lpage>816</lpage>. <pub-id pub-id-type="doi">10.1111/j.1462-5822.2006.00836.x</pub-id></citation></ref>
</ref-list>
<glossary>
<title>Abbreviations</title>
<def-list id="DL1">
<def-item>
<term>Cox-2</term>
<def>
<p>cyclooxygenase 2</p>
</def>
</def-item>
<def-item>
<term>DAI</term>
<def>
<p>disease activity index</p>
</def>
</def-item>
<def-item>
<term>DSS</term>
<def>
<p>dextran sodium sulfate</p>
</def>
</def-item>
<def-item>
<term>EcN</term>
<def>
<p><italic>Escherichia coli</italic> Nissle 1917</p>
</def>
</def-item>
<def-item>
<term>GAPDH</term>
<def>
<p>glyceraldehyde-3-phosphate dehydrogenase</p>
</def>
</def-item>
<def-item>
<term>hBD-2</term>
<def>
<p>human &#x03B2;-defensin</p>
</def>
</def-item>
<def-item>
<term>IBD</term>
<def>
<p>inflammatory bowel diseases</p>
</def>
</def-item>
<def-item>
<term>iNOS</term>
<def>
<p>inducible nitric oxide synthase</p>
</def>
</def-item>
<def-item>
<term>LB</term>
<def>
<p>Luria-Bertani broth</p>
</def>
</def-item>
<def-item>
<term>LPS</term>
<def>
<p>lipopolysaccharide</p>
</def>
</def-item>
<def-item>
<term>MIP-2</term>
<def>
<p>macrophage inflammatory protein 2</p>
</def>
</def-item>
<def-item>
<term>MMPs</term>
<def>
<p>matrix metalloproteinases</p>
</def>
</def-item>
<def-item>
<term>NO</term>
<def>
<p>nitric oxide</p>
</def>
</def-item>
<def-item>
<term>OMVs</term>
<def>
<p>outer membrane vesicles</p>
</def>
</def-item>
<def-item>
<term>PAGE</term>
<def>
<p>polyacrylamide gel electrophoresis</p>
</def>
</def-item>
<def-item>
<term>PBMCs</term>
<def>
<p>peripheral blood mononuclear cells</p>
</def>
</def-item>
<def-item>
<term>PBS</term>
<def>
<p>phosphate buffered saline</p>
</def>
</def-item>
<def-item>
<term>PRRs</term>
<def>
<p>pattern-recognition receptors</p>
</def>
</def-item>
<def-item>
<term>SDS</term>
<def>
<p>sodium dodecyl sulfate</p>
</def>
</def-item>
<def-item>
<term>TEM</term>
<def>
<p>transmission electron microscopy</p>
</def>
</def-item>
<def-item>
<term>TFF-3</term>
<def>
<p>trefoil factor 3</p>
</def>
</def-item>
<def-item>
<term>TJ</term>
<def>
<p>tight junction</p>
</def>
</def-item>
<def-item>
<term>TLRs</term>
<def>
<p>toll-like receptors</p>
</def>
</def-item>
<def-item>
<term>TNF-&#x03B1;</term>
<def>
<p>tumor necrosis factor-&#x03B1;</p>
</def>
</def-item>
<def-item>
<term>Treg</term>
<def>
<p>regulatory T cells</p>
</def>
</def-item>
<def-item>
<term>UC</term>
<def>
<p>ulcerative colitis</p>
</def>
</def-item>
<def-item>
<term>ZO-1</term>
<def>
<p>zonula occludens-1</p>
</def>
</def-item>
</def-list>
</glossary>
</back>
</article>