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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2017.00092</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Regulation of Sterol Biosynthesis in the Human Fungal Pathogen <italic>Aspergillus fumigatus</italic>: Opportunities for Therapeutic Development</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Dhingra</surname> <given-names>Sourabh</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/385670/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Cramer</surname> <given-names>Robert A.</given-names></name>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/64403/overview"/>
</contrib>
</contrib-group>
<aff><institution>Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover</institution> <country>NH, USA</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: <italic>Scott Moye-Rowley, University of Iowa, USA</italic></p></fn>
<fn fn-type="edited-by"><p>Reviewed by: <italic>Sabine Fillinger, Institut National de la Recherche Agronomique (INRA), France; Sudhanshu Shukla, Amity Institute of Biotechnology, India</italic></p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x002A;Correspondence: <italic>Robert A. Cramer, <email>robert.a.cramer.jr@dartmouth.edu</email></italic></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Antimicrobials, Resistance and Chemotherapy, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>01</day>
<month>02</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>8</volume>
<elocation-id>92</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>09</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>13</day>
<month>01</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2017 Dhingra and Cramer.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Dhingra and Cramer</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Sterols are a major component of eukaryotic cell membranes. For human fungal infections caused by the filamentous fungus <italic>Aspergillus fumigatus</italic>, antifungal drugs that target sterol biosynthesis and/or function remain the standard of care. Yet, an understanding of <italic>A. fumigatus</italic> sterol biosynthesis regulatory mechanisms remains an under developed therapeutic target. The critical role of sterol biosynthesis regulation and its interactions with clinically relevant azole drugs is highlighted by the basic helix loop helix (bHLH) class of transcription factors known as Sterol Regulatory Element Binding Proteins (SREBPs). SREBPs regulate transcription of key ergosterol biosynthesis genes in fungi including <italic>A. fumigatus</italic>. In addition, other emerging regulatory pathways and target genes involved in sterol biosynthesis and drug interactions provide additional opportunities including the unfolded protein response, iron responsive transcriptional networks, and chaperone proteins such as Hsp90. Thus, targeting molecular pathways critical for sterol biosynthesis regulation presents an opportunity to improve therapeutic options for the collection of diseases termed aspergillosis. This mini-review summarizes our current understanding of sterol biosynthesis regulation with a focus on mechanisms of transcriptional regulation by the SREBP family of transcription factors.</p>
</abstract>
<kwd-group>
<kwd>ergosterol</kwd>
<kwd><italic>Aspergillus fumigatus</italic></kwd>
<kwd>triazoles</kwd>
<kwd>SREBPs</kwd>
<kwd>antifungal agents</kwd>
</kwd-group>
<contract-num rid="cn001">R01 AI081838</contract-num>
<contract-sponsor id="cn001">National Institutes of Health<named-content content-type="fundref-id">10.13039/100000002</named-content></contract-sponsor>
<counts>
<fig-count count="3"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="147"/>
<page-count count="14"/>
<word-count count="0"/>
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</article-meta>
</front>
<body>
<sec><title>Introduction</title>
<p><italic>Aspergillus fumigatus</italic> is an environmental filamentous fungus and is the major causal agent of the collection of diseases known as aspergillosis (<xref ref-type="bibr" rid="B76">Kwon-Chung and Sugui</xref>, <xref ref-type="bibr" rid="B76">2013</xref>). With increase use of immune suppressive therapies to treat many human diseases, the incidence of invasive aspergillosis (IA) is on the rise with mortality rates between 30&#x2013;95% (reviewed in <xref ref-type="bibr" rid="B17">Brown et al., 2012</xref>). Though comprehensive epidemiology studies are currently lacking for aspergillosis, a recent estimate suggests more than 3 million people have invasive or chronic <italic>A. fumigatus</italic> infection potentially leading to more than 600,000 deaths a year (<xref ref-type="bibr" rid="B53">Gsaller et al., 2016</xref>). The major drugs used to treat aspergillosis target ergosterol, the fungal cholesterol equivalent, and belong to the polyene and azole classes of antifungal drugs. Amphotericin B is the major polyene used in the context of IA, however, due to host toxicity concerns it is now primarily used for salvage therapy (reviewed in <xref ref-type="bibr" rid="B47">Gallis et al., 1990</xref>; <xref ref-type="bibr" rid="B102">Patterson et al., 2016</xref>). The azole class of drugs that target the cytochrome P-450 enzyme eburicol 14&#x03B1;-demethylase (encoded by the cyp51A/B/<italic>erg11A/B</italic> genes) in the ergosterol pathway are the major class of drugs used to treat IA (<xref ref-type="bibr" rid="B102">Patterson et al., 2016</xref>). Anti-fungal properties of azoles have been long documented, however, agricultural use of azoles as a fungicide is proposed to lead to azole resistance in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B121">Snelders et al., 2009</xref>; <xref ref-type="bibr" rid="B27">Chowdhary et al., 2013</xref>). Environmental azole resistant isolates have emerged in clinics throughout the world and are associated with high mortality rates (reviewed in <xref ref-type="bibr" rid="B136">Verweij et al., 2016</xref>). Affinity binding analysis reveals azoles directly bind with high affinity to Cyp51 class of proteins in various organisms including <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B105">Podust et al., 2001</xref>; <xref ref-type="bibr" rid="B140">Warrilow et al., 2010</xref>, <xref ref-type="bibr" rid="B139">2013</xref>). In <italic>A. fumigatus</italic>, azoles bind to both Cyp51A and Cyp51B, albeit azole binding is tighter to Cyp51B (<xref ref-type="bibr" rid="B140">Warrilow et al., 2010</xref>). It is worth noting that azoles are effective in controlling growth of <italic>Aspergillus</italic>, but they are mostly fungistatic against the majority of <italic>A. fumigatus</italic> isolates (<xref ref-type="bibr" rid="B87">Meletiadis et al., 2007</xref>). Thus, a better understanding of the molecular mechanisms associated with sterol biosynthesis is needed to develop new therapeutic strategies particularly in the face of emerging triazole resistance.</p>
</sec>
<sec><title>Sterol Biosynthesis in <italic>Aspergillus fumigatus</italic></title>
<p>Sterols are isoprenoid derived molecules and are a major component of eukaryotic cell membranes; necessary for fluidity, permeability and protein function. Fungi are among the oldest eukaryotes known to synthesize sterols (reviewed in <xref ref-type="bibr" rid="B101">Parks and Casey, 1995</xref>). Unlike mammals that have cholesterol as the preferred membrane sterol, fungi synthesize ergosterol. The synthesis of ergosterol begins with acetyl-coA and involves 20 steps (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>) (<xref ref-type="bibr" rid="B31">da Silva Ferreira et al., 2005</xref>; <xref ref-type="bibr" rid="B4">Alcazar-Fuoli et al., 2008</xref>). This process is metabolically costly requiring large amounts of ATP equivalents, reducing power in the form of NADPH, heme-iron, and 12 oxygen molecules (<xref ref-type="bibr" rid="B25">Chang et al., 2007</xref>; reviewed in <xref ref-type="bibr" rid="B101">Parks and Casey, 1995</xref>; <xref ref-type="bibr" rid="B113">Rosenfeld and Beauvoit, 2003</xref>). As molecular oxygen is necessary for sterol production and sterols are only found in eukaryotes, Galea and Brown hypothesize a direct correlation between eukaryotic aerobic life-style and sterols (<xref ref-type="bibr" rid="B46">Galea and Brown, 2009</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p><bold>The canonical fungal ergosterol biosynthetic pathway.</bold> Biosynthesis of ergosterol from Acetyl-coA depicting intermediate steps and enzymes catalyzing the intermediate reactions. Known regulators of Erg genes are shown on right side, whereas anti-fungal agents targeting various pathway steps are shown on the left of the pathway. <sup>&#x2217;</sup>Signifies the pathway differences in <italic>Aspergillus fumigatus</italic> and <italic>Saccharomyces cerevisiae</italic>. In <italic>S. cerevisiae</italic>, Cyp51 converts lanosterol into C4 methylated sterols which are demethylated by Erg24 and Erg25 into zymosterol. Erg6 then converts zymosterol into fecosterol.</p></caption>
<graphic xlink:href="fmicb-08-00092-g001.tif"/>
</fig>
<p>Thus, it is plausible that selective pressure exerted by oxygen on primitive life forms led to the emergence of sterols. Oxidative metabolism via mitochondria leads to production of reactive oxygen species (ROS) and eukaryotic organisms have developed strategies to counter intrinsic ROS production (reviewed in <xref ref-type="bibr" rid="B6">Apel and Hirt, 2004</xref>; <xref ref-type="bibr" rid="B78">Lambou et al., 2010</xref>). Understanding these mechanisms has implications for understanding current sterol targeting antifungal drug mechanisms and in developing new therapeutic approaches. In support of this hypothesis, azole resistant isolates of <italic>C. glabrata</italic> have lower ATP production and lower intrinsic ROS production, possibly due to impairment of mitochondrial function (<xref ref-type="bibr" rid="B103">Peng et al., 2012</xref>). In other clinical strains of <italic>C. albicans</italic> and <italic>C. glabrata</italic>, azole resistance shows a strong negative correlation with ROS production (<xref ref-type="bibr" rid="B70">Kobayashi et al., 2002</xref>). Thus, oxygen plays an important role in azole mediated sensitivity in various fungi and ROS production plays an integral and yet to be fully defined role in azole drug function. Importantly, given the proposed mechanism of action of the azole class of antifungal drugs on <italic>A. fumigatus</italic>, more research is needed to understand the mechanisms linking sterol biosynthesis, oxygen levels, and fungal fitness during azole therapy.</p>
<p>Along these lines, these observations suggest a role for sterols in preventing oxidative damage by molecular oxygen. In support of a sterol mediated oxidative damage prevention mechanism, exposure of red blood cells (RBCs) to hyperbaric oxygen (HBO), which is associated with oxidative damage, increases RBC&#x2019;s cholesterol levels (<xref ref-type="bibr" rid="B90">Miliutina et al., 1992</xref>). However, the RBC&#x2019;s oxygen carrying capacity is inversely correlated with cellular cholesterol content (<xref ref-type="bibr" rid="B21">Buchwald et al., 2000</xref>). One possible explanation for these observations is that HBO increases oxygen solubility in plasma reducing the load on RBCs to meet cellular oxygen demand. Moreover, 3&#x03B2;-Hydroxysterol-&#x0394;24-reductase (DHCR24), the enzyme that catalyzes the penultimate step in cholesterol biosynthesis, scavenges ROS providing a potential causal link between increased cholesterol levels under prolonged oxygen exposure (<xref ref-type="bibr" rid="B83">Lu et al., 2008</xref>). Finally, cats exposed to HBO show a 150% increase in intra-alveolar cholesterol levels (<xref ref-type="bibr" rid="B11">Bergren and Beckman, 1975</xref>). However, the relationship between increased sterol levels, ROS resistance, and antifungal drug efficacy remains enigmatic. Some answers may be found in understanding the function and regulation of key sterol biosynthesis enzymes.</p>
<p>Synthesis of HMG-CoA is the first committed step in the biosynthesis of isoprenoids. HMG-CoA reductase catalyzes HMG-CoA to mevalonate and is the rate-limiting in eukaryote sterol biosynthesis (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>) (<xref ref-type="bibr" rid="B18">Brown et al., 1973</xref>). Two major pathways of ergosterol biosynthesis are proposed after the formation of the first sterol, lanosterol. Lanosterol can be converted to zymosterol or eburicol and this appears to be fungal species dependent. In the model yeast <italic>Saccharomyces cerevisiae</italic> where sterol biosynthesis in fungi is extensively studied, conversion to zymosterol is favored, while eburicol formation is the preferred choice in the human pathogen <italic>A. fumigatus</italic> under conditions examined to date (<xref ref-type="bibr" rid="B45">Fryberg et al., 1973</xref>; <xref ref-type="bibr" rid="B95">Nes et al., 1989</xref>; <xref ref-type="bibr" rid="B4">Alcazar-Fuoli et al., 2008</xref>). Both pathways converge at the formation of fecosterol (<xref ref-type="bibr" rid="B4">Alcazar-Fuoli et al., 2008</xref>). Fecosterol conversion to episterol is a unique reversible reaction in the ergosterol pathway; however, evidence suggests that episterol production is favored (<xref ref-type="bibr" rid="B96">Nes et al., 2002</xref>). This may explain why fecosterol is not detected in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B4">Alcazar-Fuoli et al., 2008</xref>). Three synthetic pathways have been proposed for the conversion of episterol to ergosterol in fungi (reviewed in <xref ref-type="bibr" rid="B95">Nes et al., 1989</xref>; <xref ref-type="bibr" rid="B10">Benveniste, 2004</xref>). In <italic>A. fumigatus</italic>, intermediates for two pathways have been identified, which suggests at least two of the possible three pathways are functional. <bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold> summarizes genes known or predicted to encode enzymes or regulators of the ergosterol biosynthesis pathway in <italic>A. fumigatus.</italic> Importantly, many of these genes remain to be functionally characterized in this important human pathogen.</p>
<p>One potential reason for the lack of genetic analyses on sterol biosynthesis and function in <italic>A. fumigatus</italic> is that many steps in the biosynthetic pathway involve multiple copies of genes encoding the respective enzymes. For example, two 14-&#x03B1; eburicol demethylases (Cyp51A and Cyp51B) (<xref ref-type="bibr" rid="B88">Mellado et al., 2001</xref>) and three C5 desaturases (Erg3a, 3b, and 3c) are present in <italic>A</italic>. fumigatus (<xref ref-type="bibr" rid="B3">Alcazar-Fuoli et al., 2006</xref>). Mutants lacking <italic>cyp51A</italic> in the ergosterol biosynthetic pathway can grow <italic>in vitro</italic> and are virulent in an IPA murine model (<xref ref-type="bibr" rid="B89">Mellado et al., 2005</xref>). This is in contrast with <italic>S. cerevisiae</italic> strains that lack a single <italic>erg11</italic> gene (<italic>cyp51A in A. fumigatus</italic>) and cannot grow aerobically (<xref ref-type="bibr" rid="B7">Bard et al., 1993</xref>). However, generation of a double gene replacement mutant (<italic>cyp51A</italic> and <italic>cyp51B</italic>) in <italic>A. fumigatus</italic> is lethal under standard laboratory conditions. Moreover, a strain with <italic>cyp51A</italic> expression under control of a nitrogen source conditional promoter (<italic>niiA)</italic> and a genetic null mutation of <italic>cyp51B</italic> (niiA(p)::<italic>cyp51A</italic>, &#x0394;<italic>cyp51B</italic>) is unable to establish murine infection (<xref ref-type="bibr" rid="B59">Hu et al., 2007</xref>). The sterol profile of the <italic>cyp51a</italic> null mutant is similar to WT, however, a complete lack of Cyp51 activity leads to accumulation of 14-&#x03B1; methylated sterols, similar to treatment with triazole antifungal drugs that target this important step in sterol biosynthesis. It is important to note that indigenous host sterol was not able to complement the sterol phenotype of the niiA(p)::<italic>cyp51A</italic>, &#x0394;<italic>cyp51B</italic> double mutant in the IPA murine model (<xref ref-type="bibr" rid="B59">Hu et al., 2007</xref>). Thus, it is clear that sterol levels are important for growth and survival of <italic>A. fumigatus</italic> making sterol biology an attractive target for control of aspergillosis.</p>
</sec>
<sec><title>Sterol Targeting Drugs Used to Combat Aspergillosis</title>
<p>The fungal membrane maintains cellular homeostasis in part through optimization of phospholipid, sphingolipid and sterol levels. As mentioned, antifungal drugs in the polyene and azole class target cell membrane homeostasis through their effects on sterols. Amphotericin B, a polyene class of anti-fungal drug irreversibly binds to ergosterol and this binding is paramount to fungal killing. Binding of Amphotericin B to sterols in membranes causes membrane leakage and is the proposed mechanism leading to cell death (<xref ref-type="bibr" rid="B52">Gray et al., 2012</xref>). A main advantage of Amphotericin B as an anti-<italic>A. fumigatus</italic> drug is its recalcitrance to resistance emergence perhaps due in part to its cidal activity (<xref ref-type="bibr" rid="B87">Meletiadis et al., 2007</xref>; <xref ref-type="bibr" rid="B52">Gray et al., 2012</xref>). However, its dose dependent toxicity to host cells is a major and significant limitation. Consequently, triazoles (primarily voriconazole and posaconazole) have become the primary choice of treatment for IA (<xref ref-type="bibr" rid="B102">Patterson et al., 2016</xref>).</p>
<p>Voriconazole targets heme containing P450 monooxygenase proteins, Cyp51A and Cyp51B, which catalyzes P450 dependent demethylation at C-14 position (reviewed in <xref ref-type="bibr" rid="B49">Ghannoum and Rice, 1999</xref>; <xref ref-type="bibr" rid="B85">Mast et al., 2010</xref>; <xref ref-type="bibr" rid="B140">Warrilow et al., 2010</xref>). Cell membrane integrity requires that embedded sterols lack C-4 methyl groups (<xref ref-type="bibr" rid="B94">Nes et al., 1993</xref>). Treatment with voriconazole leads to depletion of ergosterol and accumulation of lanosterol and toxic 14-&#x03B1;-methylated sterols in the plasma membrane. In voriconazole treated <italic>C. albicans</italic>, accumulation of squalene, zymosterol, 4,14-Dimethylzymosterol, 24-methylenedihydrolanosterol and lanosterol is observed (<xref ref-type="bibr" rid="B114">Sanati et al., 1997</xref>). In contrast, eburicol and 4&#x03B1;-methyl sterol accumulation is observed in voriconazole treated <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B144">Xiong et al., 2005</xref>). It is not clear if voriconazole targets additional enzymes in the ergosterol biosynthetic pathway or if these intermediate accumulations are due to indirect effects of accumulating methylated sterols. Voriconazole is effective against itraconazole resistant <italic>A. fumigatus</italic> isolates (<xref ref-type="bibr" rid="B2">Abraham et al., 1999</xref>; <xref ref-type="bibr" rid="B33">Dannaoui et al., 2006</xref>). It is interesting to note that both azoles target Cyp51 proteins, thus the mechanisms conferring lack of cross resistance needs further investigation (reviewed in <xref ref-type="bibr" rid="B86">Mayr and Lass-Fl&#x00F6;rl, 2011</xref>; reviewed in <xref ref-type="bibr" rid="B97">Odds et al., 2003</xref>). Consequently, the azole and polyene drug classes further demonstrate the critical importance for sterol homeostasis in <italic>A. fumigatus</italic> and other fungi.</p>
</sec>
<sec><title>Regulation of Sterol Biosynthesis in <italic>A. fumigatus</italic></title>
<sec><title>Sterol Regulatory Element Binding Proteins (SREBP) Transcriptional Regulation</title>
<p>Given the evolutionary conservation of sterol biosynthesis in eukaryotes, much can be learned about sterol biosynthesis mechanisms in <italic>A. fumigatus</italic> through examination of more well studied systems in yeast and mammals among others. While many mechanisms are conserved, it is clear that each organism has evolved unique regulatory mechanisms and this is particularly true for <italic>A. fumigatus</italic> as discussed below. Importantly, these unique mechanisms present opportunities to develop novel therapeutic strategies to augment existing antifungal drugs or identify new targets and molecules with activity against <italic>A. fumigatus.</italic></p>
<p><italic>De novo</italic> synthesis and LDL receptor mediated endocytosis are two major pathways through which mammalian cells fulfill their sterol requirement (<xref ref-type="bibr" rid="B19">Brown and Goldstein, 1986</xref>; reviewed in <xref ref-type="bibr" rid="B42">Espenshade and Hughes, 2007</xref>). In mammals, levels of cholesterol are known to control both of these pathways at the transcriptional level (<xref ref-type="bibr" rid="B20">Brown and Goldstein, 1997</xref>). The Sterol Regulatory Element Binding Protein (SREBP) class of transcription factors (TF) bind SRE elements and function as major regulators of sterol levels in mammalian cells (<xref ref-type="bibr" rid="B147">Yokoyama et al., 1993</xref>; <xref ref-type="bibr" rid="B20">Brown and Goldstein, 1997</xref>). When cells are depleted of sterol, the transcription of HMG-CoA reductase and LDL receptor increase through SREBP binding of sterol regulatory element (SRE) DNA elements in promoter regions of these genes. Three major SREBP&#x2019;s have been identified in mammalian cells viz., SREBP-1a and SREBP-1c encoded by the same gene, and SREBP-2 (<xref ref-type="bibr" rid="B147">Yokoyama et al., 1993</xref>; <xref ref-type="bibr" rid="B60">Hua et al., 1995</xref>).</p>
<p>Sterol Regulatory Element Binding Proteins are bHLH TFs synthesized as ER resident proteins with their N and C terminals in the cytosol. The SREBP binding partner, SCAP (Sterol Cleavage Activating Protein), regulates the activation of SREBPs (<xref ref-type="bibr" rid="B109">Rawson et al., 1999</xref>). When cellular sterol levels are replete, SCAP binds sterols and consequently promotes binding to INSIG (another ER resident protein) to prevent ER exit of SREBP-SCAP. When cellular sterol levels are reduced, SCAP does not bind INSIG which allows ER exit of SREBP via COPII vesicles (<xref ref-type="bibr" rid="B16">Brown et al., 2002</xref>; <xref ref-type="bibr" rid="B145">Yang et al., 2002</xref>; <xref ref-type="bibr" rid="B128">Sun et al., 2005</xref>). In the Golgi, SREBPs are sequentially proteolytically cleaved by golgi resident site-1 serine protease (S1P) that cuts SREBP in the luminal loop (<xref ref-type="bibr" rid="B39">Duncan et al., 1997</xref>) and site-2 zinc metallo protease, (S2P) that cuts in the transmembrane domain (<xref ref-type="bibr" rid="B110">Rawson et al., 1997</xref>; <xref ref-type="bibr" rid="B40">Duncan et al., 1998</xref>). These proteolytic cleavage events release the N terminal TF for nuclear localization and activation of gene expression (<xref ref-type="bibr" rid="B41">Espenshade, 2006</xref>; <xref ref-type="bibr" rid="B42">Espenshade and Hughes, 2007</xref>).</p>
<p>In the fission yeast <italic>Schizosaccharomyces pombe</italic>, seminal studies identified and characterized fungal homologs of SREBP (Sre1), Scap (Scp1), and Insig (Ins1) (<xref ref-type="bibr" rid="B63">Hughes et al., 2005</xref>). As in mammalian cells, Sre1 physically interacts with Scp1 and Sre1 activity is essential to maintain cellular sterol levels through transcriptional regulation of target genes including oxygen dependent steps in the ergosterol biosynthesis pathway (e.g., <italic>erg11, erg25, erg3, erg5, erg6</italic>) (<xref ref-type="bibr" rid="B63">Hughes et al., 2005</xref>, <xref ref-type="bibr" rid="B61">2007a</xref>; <xref ref-type="bibr" rid="B132">Todd et al., 2006</xref>). A major activation signal for <italic>S. pombe</italic> Sre1 proteolytic cleavage is hypoxia. Under low oxygen concentrations that induce hypoxia in fission yeast, ergosterol levels are reduced and this in turn induces proteolytic cleavage of Sre1. Thus, in fission yeast ergosterol levels act as an indirect oxygen sensor (<xref ref-type="bibr" rid="B63">Hughes et al., 2005</xref>). These data further highlight the mechanistic relationship between sterol biosynthesis and oxygen discussed previously. Cleavage of Sre1 is also stimulated by drugs that inhibit ergosterol biosynthesis including the azoles (<xref ref-type="bibr" rid="B63">Hughes et al., 2005</xref>, <xref ref-type="bibr" rid="B61">2007a</xref>). Consequently, in fission yeast, ergosterol regulates Sre1-Scp1 ER-Golgi transport, cleavage and activation (<xref ref-type="bibr" rid="B106">Porter et al., 2010</xref>). Like mammalian cells, direct binding of ergosterol to Sre1-Scp1 complex determines the fate of Sre1 cleavage, however, unlike mammalian cells, this is independent of Ins1 binding (<xref ref-type="bibr" rid="B106">Porter et al., 2010</xref>). In <italic>S. pombe</italic>, the INSIG homolog Ins1 does not regulate the SREBP pathway. Rather, Ins1 regulates HMG-CoA-reductase (<italic>hmg1</italic>) that catalyzes HMG-CoA to mevalonate; the first committed step in sterol synthesis. Unlike in mammalian cells, <italic>S. pombe</italic> Ins1 regulates the activity and not stability of Hmg1 (<xref ref-type="bibr" rid="B22">Burg et al., 2008</xref>).</p>
<p>As in fission yeast, <italic>A. fumigatus</italic> contains a membrane bound SREBP homolog, SrbA, required for sterol biosynthesis, hypoxia fitness, iron homeostasis, and azole drug tolerance/resistance (<xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>; <xref ref-type="bibr" rid="B13">Blatzer et al., 2011</xref>; <xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). The sterol profile of &#x0394;<italic>srbA</italic> shows a significant decrease in total ergosterol content and accumulation of 4-methyl fecosterol and 4,4 dimethyl fecosterol (<xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>; <xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>). This likely stems from direct transcriptional control of <italic>cyp51A/B</italic> and <italic>erg25A/B</italic> expression by SrbA in <italic>A. fumigatus</italic> though DNA binding of an SRE motif in their promoters (<xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>; <xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). Overexpression of <italic>cyp51a</italic> in the &#x0394;<italic>srbA</italic> strain does not restore a WT sterol profile or hypoxia fitness which suggests SrbA regulates multiple steps in the ergosterol biosynthesis pathway (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>) (<xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>). In fact, over-expression of <italic>cyp51A</italic> in &#x0394;<italic>srbA</italic> exacerbates the accumulation of C4-methyl sterols. However, intriguingly, this strain&#x2019;s voriconazole and fluconazole MICs are restored to WT levels perhaps due to a decrease in toxic 14-&#x03B1; methylated sterol accumulation (<xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>).</p>
<p>While loss of <italic>cyp51a</italic> or <italic>erg25</italic> is dispensable for virulence of <italic>A. fumigatus</italic>, loss of SrbA severely attenuates <italic>A. fumigatus</italic> virulence in multiple immune compromised IPA murine models (<xref ref-type="bibr" rid="B89">Mellado et al., 2005</xref>; <xref ref-type="bibr" rid="B3">Alcazar-Fuoli et al., 2006</xref>; <xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>; <xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>, <xref ref-type="bibr" rid="B142">2012</xref>). Supporting a partial role for accumulation of C4 methyl sterols as a mechanism to explain the hypoxia fitness defect of &#x0394;<italic>srbA</italic>, generation of an <italic>erg25A/B</italic> double genetic null mutant was not possible in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B15">Blosser et al., 2014</xref>). It is thus possible that accumulation of 4-methyl sterols in the absence of SrbA contributes in part to its inability to grow in hypoxia and cause invasive disease. It would be intriguing to examine the sterol profile of &#x0394;<italic>srbA</italic> in the presence of high iron levels where a small but significant restoration of hypoxia growth occurs (<xref ref-type="bibr" rid="B13">Blatzer et al., 2011</xref>). Further studies are needed to fully define SrbA&#x2019;s role in <italic>A. fumigatus</italic> hypoxia fitness and virulence.</p>
<p>Intriguingly and worth consideration for therapeutic development, it is clear that significant differences exist in SREBP regulation between mammals, the yeast <italic>S. pombe</italic>, and the human pathogen <italic>A. fumigatus</italic>. The difference in SREBP activation mechanisms in <italic>A. fumigatus</italic> is highlighted by the observation that a homolog of SCAP is absent in the <italic>A. fumigatus</italic> genome. Moreover, significant levels of the N terminal bHLH portion of SrbA are detectable in normoxia conditions in <italic>A. fumigatus</italic> suggesting that proteolytic cleavage occurs at some level when sterols levels are presumably high. It is worth noting that under these conditions NGFP::SrbA localizes to the ER/NE rather than nuclei (<xref ref-type="bibr" rid="B142">Willger et al., 2012</xref>). It is plausible that post-translational mechanisms control the levels of active SrbA, in a manner similar to <italic>S. pombe</italic> (<xref ref-type="bibr" rid="B64">Hughes and Espenshade, 2008</xref>), however, this hypothesis needs further investigation. These observations raise an important question that remains to be answered in <italic>A. fumigatus:</italic> how does the <italic>A. fumigatus</italic> SREBP pathway monitor cellular sterol levels? It is plausible that a SCAP like protein remains to be identified. A protein with sequence similarity to mammalian Insig &#x2013; InsA (AFUB_064770) is present in the genome but is yet to be characterized in <italic>A. fumigatus</italic>. Moreover, it is plausible that sterol levels fluctuate with filamentous fungal development in batch culture perhaps explaining the apparent constitutive cleavage of <italic>A. fumigatus</italic> SrbA in sterol replete conditions. Intriguingly, mRNA levels of SrbA do not change in the presence of voriconazole in at least 2 independent studies (<xref ref-type="bibr" rid="B32">da Silva Ferreira et al., 2006</xref>; <xref ref-type="bibr" rid="B74">Krishnan et al., 2013</xref>). This is noteworthy as SrbA has been observed to bind its own promoter in response to hypoxia and azole drug treatment (<xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>; <xref ref-type="bibr" rid="B53">Gsaller et al., 2016</xref>). Thus, it is also plausible that SrbA activity in <italic>A. fumigatus</italic> is regulated by another signal related to oxygen and antifungal drug responses. Given that genes encoding key enzymes in heme biosynthesis are transcriptionally regulated by SrbA, heme or heme intermediates are a potential possibility through which SrbA activity is regulated that remains to be explored (<xref ref-type="bibr" rid="B35">Davies and Rine, 2006</xref>; <xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>).</p>
<p>An additional important mechanistic difference in regulation of SREBP activity in <italic>S. pombe</italic> and <italic>A. fumigatus</italic> compared to mammalian cells is at the level of proteolytic cleavage. <italic>S. pombe</italic> and <italic>A. fumigatus</italic> SREBP pathways lack homologs of S1p and S2p. Sre1 is activated by a different mechanism requiring golgi resident defective in <italic>sre1</italic> cleavage (Dsc) proteins which form a complex collectively referred to as the Dsc complex that encode components of an E3 ligase (<xref ref-type="bibr" rid="B125">Stewart et al., 2011</xref>). Homologs of <italic>S. pombe</italic> Dsc1-4 are present in the <italic>A. fumigatus</italic> genome (<italic>dscA-D</italic>) and genetic null mutants largely phenocopy the <italic>A. fumigatus srbA</italic> genetic null mutant including important azole drug and virulence phenotypes (<xref ref-type="bibr" rid="B142">Willger et al., 2012</xref>). For example, loss of DscA significantly reduces SrbA N terminus protein levels in normoxia and hypoxia and mRNA levels of known SrbA target genes including <italic>cyp51A.</italic> Phenotypes of &#x0394;<italic>dscA</italic> could largely be rescued by ectopic expression of the SrbA N terminus, amino acid residues 1-425. These data link Dsc proteins with regulation of SrbA function in <italic>A. fumigatus.</italic></p>
<p>Recently, a homolog of <italic>S. pombe</italic> Dsc5, another component of the Dsc complex, was characterized (<italic>dscE)</italic> in <italic>A. nidulans</italic> and showed to be essential for low oxygen survival in this model organism. <italic>A. nidulans dscE</italic> has a UAS and UBX domain at the C terminus, similar to <italic>S. pombe</italic> Dsc5 (<xref ref-type="bibr" rid="B124">Stewart et al., 2012</xref>; <xref ref-type="bibr" rid="B8">Bat-Ochir et al., 2016</xref>). Interestingly, non-sense mutation in UAS domain of <italic>dscE</italic> results in loss of function of this key hypoxia regulator indicating a role of the UAS and possibly downstream UBX domain of DscE in hypoxia fitness, similar to the mechanism of Sre1 cleavage in <italic>S. pombe</italic> (<xref ref-type="bibr" rid="B8">Bat-Ochir et al., 2016</xref>). The UBX domain is known to interact with Cdc48, a major regulator of the Endoplasmic Reticulum Associated Degradation (ERAD) pathway (reviewed in <xref ref-type="bibr" rid="B126">Stolz et al., 2011</xref>). In <italic>S. pombe</italic>, the UBX domain of Dsc5 is essential for recruitment of Cdc48 to Dsc2, a component of the Dsc complex; however, this recruitment is intriguingly dispensable for Sre1 cleavage (<xref ref-type="bibr" rid="B124">Stewart et al., 2012</xref>). It is worth noting that loss of Cdc48 is indispensable for Sre1 cleavage in <italic>S. pombe</italic>. Thus, further studies are needed to confirm if Cdc48 is recruited to other components of the Dsc complex apart from Dsc2 in a Dsc5-UBX domain independent manner or if expression and not recruitment is essential for its function in Sre1 cleavage. At this time, the role of the UAS domain of Dsc5/DscE is not completely understood. Future studies will determine if the UAS domain has a role in recruitment of Cdc48 or association of Dsc5 to other components of Dsc complex.</p>
<p>Consequently, the mechanism of Sre1 and SrbA cleavage remains to be fully elucidated. Recently, a rhomboid protease Rbd2 has been suggested to be necessary for cleavage and activation of Sre1 in <italic>S. pombe</italic> (<xref ref-type="bibr" rid="B69">Kim et al., 2015</xref>). Further mechanistic studies are necessary to determine the exact role of Rbd2 and other yet unidentified mechanisms for cleavage and activation of Sre1 in fission yeast. Recently two proteases including an Rbd2 homolog &#x2013; <italic>rbdB</italic> and <italic>sppA</italic> - have been identified in <italic>Neurospora crassa</italic> and <italic>A. fumigatus</italic> mediating the cleavage of SrbA (<bold>Figure <xref ref-type="fig" rid="F2">2</xref></bold>) (<xref ref-type="bibr" rid="B8">Bat-Ochir et al., 2016</xref>; <xref ref-type="bibr" rid="B38">Dhingra et al., 2016</xref>; <xref ref-type="bibr" rid="B135">Vaknin et al., 2016</xref>). How SrbA interacts with the Dsc complex, RbdB and SppA is an important area of ongoing research. It is important to note that canonically both rhomboid protease and aspartyl protease cleave the intramembrane domains and/or near the N terminal site of their substrates through regulated intramembrane proteolysis (<xref ref-type="bibr" rid="B81">Lohi et al., 2004</xref>; <xref ref-type="bibr" rid="B54">Ha et al., 2013</xref>; reviewed in <xref ref-type="bibr" rid="B127">Sun et al., 2016</xref>). In <italic>A. fumigatus</italic> both proteases appear essential for SrbA activation, thus future experiments will reveal if their functions are conserved or if they act in a non-canonical fashion. It is important to note that the DscE3 complex and SppA are golgi and ER resident localized proteins respectively (<xref ref-type="bibr" rid="B125">Stewart et al., 2011</xref>; <xref ref-type="bibr" rid="B142">Willger et al., 2012</xref>; <xref ref-type="bibr" rid="B8">Bat-Ochir et al., 2016</xref>). Thus, it is unclear if the processing of nascent SrbA happens in ER or if it is a dynamic process requiring anterograde and retrograde transport from ER to golgi and vice versa (<bold>Figure <xref ref-type="fig" rid="F2">2</xref></bold>). Additionally, in mammals, SREBP cleavage in the ER lumen by S1P is a prerequisite for S2P activity, thus additional, yet unidentified, proteases may be involved in activation of SrbA (reviewed in <xref ref-type="bibr" rid="B127">Sun et al., 2016</xref>). As mammals and <italic>A. fumigatus</italic> have a distinct mechanism of SREBP activation, molecular dissection of SrbA proteolytic cleavage in <italic>A. fumigatus</italic> is an important area of future investigation to fully understand sterol biosynthesis and harness this pathway for novel therapeutic development.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p><bold>Proposed Model of SREBP regulation in <italic>A. fumigatus</italic>.</bold> SrbA (full length SrbA protein is represented as N terminus and C terminus joined by a transmembrane region) is an ER resident protein, however, the membrane topology of SrbA is unknown. Unlike <italic>Schizosaccharomyces pombe</italic>, SCAP has not been identified in <italic>A. fumigatus</italic>, and it is not clear if an unidentified ER resident protein &#x201C;X&#x201D; forms a complex with SrbA to regulate SrbA activation. Golgi resident Dsc proteins (DscA-E collectively known as DSC complex) are indispensable for SrbA cleavage and activation, however, it is unclear if there is anterograde and/or retrograde movement of SrbA to the Golgi or Dsc complex movement to the ER for SrbA cleavage. The rhomboid protease RbdB is indispensable for <italic>A. fumigatus</italic> cleavage and in <italic>S. pombe</italic> Rbd2 interacts with the UBX domain of Dsc5 (DscE homolog of <italic>A. fumigatus</italic>) via Cdc48. However, the nature of this interaction needs validation in <italic>A. fumigatus</italic>. The Signal Peptide Peptidase (SppA) is an ER resident aspartyl protease involved in regulated intramembrane proteolysis and is indispensable for SrbA cleavage, however, it is not clear if SppA cleavage is preceded or followed by action of the Dsc complex and/or RbdB mediated cleavage. Once cleaved, the C terminus of the protein is potentially degraded and the N terminus translocates to the nucleus where it binds to SRE elements in the promoter region of genes involved in the hypoxia response. SrbA also positively regulates its own mRNA levels by binding the SRE element in the promoter region of <italic>srbA</italic>. Solid lines depict experimentally validated results, whereas dotted lines indicate predicted but not experimentally tested mechanisms. X &#x2013; Unknown ER resident protein or unidentified SCAP (like) homolog.</p></caption>
<graphic xlink:href="fmicb-08-00092-g002.tif"/>
</fig>
<p>Regulation of SREBPs in other fungi is complex and involves additional regulatory layers including post-translational mechanisms that could potentially be unique to filamentous fungi. These mechanisms are high priority targets for investigation in <italic>A. fumigatus.</italic> For example, a second non-sterol dependent pathway also controls levels of Sre1 in <italic>S. pombe</italic>. When oxygen concentration is high, a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase Ofd1 negatively regulates Sre1N levels in a proteasome dependent manner (<xref ref-type="bibr" rid="B64">Hughes and Espenshade, 2008</xref>). Under low oxygen concentrations another protein, <underline>N</underline>egative <underline>R</underline>egulator of <underline>O</underline>fd1 &#x2013; Nro1, binds to the C terminal degradation domain of Ofd1 and prevents Sre1N degradation leading to stability and accumulation of Sre1N in cells (<xref ref-type="bibr" rid="B80">Lee et al., 2009</xref>). It is interesting to note that while a putative homolog of Ofd1 is present in the <italic>A. fumigatus</italic> genome and remains to be characterized, a homolog of Nro1 is not present bringing into question whether this elegant regulatory mechanism is in play for SrbA regulation.</p>
<p>In mammals, SREBP TF levels and function are also controlled by post-translational modifications and this remains a promising area of investigation in <italic>A. fumigatus.</italic> In mammalian cells, GSK-3 (glycogen-synthase kinase) phosphorylates SREBP1 in response to DNA binding. GSK-3 mediated phosphorylation leads to docking of the ubiquitin ligase FBW7 on phosphorylated residues and subsequent proteasome-mediated degradation of active SREBP TFs (<xref ref-type="bibr" rid="B129">Sundqvist et al., 2005</xref>; <xref ref-type="bibr" rid="B107">Punga et al., 2006</xref>; <xref ref-type="bibr" rid="B9">Bengoechea-Alonso and Ericsson, 2009</xref>). Thus, in <italic>A. fumigatus</italic>, levels of active SrbA may be regulated through phosphorylation by GSK-3 and/or a different kinase followed by proteasome mediated degradation. This hypothesis awaits testing though is particularly attractive given the plethora of kinase inhibitors available to explore for antifungal development.</p>
<p>Another important area for investigation is the relationship between multiple SREBP genes in <italic>A. fumigatus</italic> and sterol biosynthesis. Similar to the mammalian SREBP pathway, three SREBPs have been identified in <italic>A. fumigatus</italic> &#x2013; SrbA, SrbB, and SrbC (<xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>; <xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). A second SREBP, Sre2, is present in <italic>S. pombe</italic>. Sre2 contains the hallmark tyrosine residue in the bHLH DNA binding domain, and two transmembrane domains however, Sre2 does not bind Scp1 and is not regulated by levels of sterols. Interestingly, Sre2 is constitutively cleaved and requires the Dsc complex for processing (<xref ref-type="bibr" rid="B63">Hughes et al., 2005</xref>; <xref ref-type="bibr" rid="B125">Stewart et al., 2011</xref>). However, loss of Sre2 does not appear to affect hypoxia fitness in <italic>S. pombe.</italic> Further studies are needed to determine the role and targets of Sre2 in <italic>S. pombe</italic>.</p>
<p>In <italic>A. fumigatus</italic>, SrbB and SrbC both have the canonical tyrosine residue in the bHLH DNA binding domain but lack the predicted transmembrane and C terminal domains of SrbA. SrbB mRNA levels are massively induced in response to hypoxia through an unknown mechanism. SrbA contributes in part to <italic>srbB</italic> hypoxia mRNA levels through direct binding to the <italic>srbB</italic> promoter region (<xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). However, loss of SrbA does not completely attenuate <italic>srbB</italic> mRNA levels. Importantly, loss of SrbB in <italic>A. fumigatus</italic> attenuates low oxygen fitness and virulence but not tolerance to azole antifungal drugs. Direct target genes of SrbB remain to be elucidated, but initial studies suggest it contributes to regulation of <italic>erg25A</italic> and <italic>hem13</italic> mRNA levels. Importantly, SrbB is a critical regulator of the ethanol fermentation pathway through direct regulation of the alcohol dehydrogenase <italic>alcC</italic> mRNA levels (<xref ref-type="bibr" rid="B50">Grahl et al., 2011</xref>; <xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). SrbC is expressed at low levels in conditions examined to date including low oxygen and its role in sterol biosynthesis and SREBP gene regulation are under investigation (<xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>).</p>
<p>An important area of future research is determining how the 3 SREBPs coordinate target gene expression which is expected to yield novel insights into the role of these TFs in <italic>A. fumigatus</italic> biology and pathogenesis. There at least appears to be co-regulation of the key ergosterol biosynthetic genes <italic>erg1</italic> and <italic>erg25A</italic> by SrbA and SrbB (<xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). In mammals, hetero-dimerization of SREBPs controls regulation of SRBEP target genes (<xref ref-type="bibr" rid="B34">Datta and Osborne, 2005</xref>). Whether this co-regulation of sterol biosynthesis genes observed in <italic>A. fumigatus</italic> involves heterodimer formation between SrbA and SrbB is not known, and direct regulation of SrbB by SrbA and vice-versa cannot be ruled out and is likely. It is interesting to note the presence of a canonical SRE in the promoter region of SrbA and data suggest SrbA auto-regulates its mRNA levels (<xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). Further research will elucidate if binding of different SREBPs to the SRE element in the promoter region of SrbA confer differential protein regulation for activation of SrbA under hypoxic and sterol-level mediated stress. In general, rigorous promoter analysis of critical genes in ergosterol biosynthesis remains an important but understudied area of <italic>A. fumigatus</italic> biology.</p>
</sec>
<sec><title>Regulation of Cytochrome P450 Enzymes</title>
<p>Cytochrome P450 enzymes are heme dependent monooxyge nases and represent an important class of enzymes for normal levels of ergosterol production (and some enzymes in this class are the major targets of the azole class of anti-fungal drugs as previously discussed (reviewed in <xref ref-type="bibr" rid="B93">Nebert and Russell, 2002</xref>)). Two major cytochrome P450 heme containing enzymes are present in the ergosterol biosynthesis pathway viz., Erg5 and Erg11 (Cyp51) (<xref ref-type="bibr" rid="B123">Song et al., 2016</xref>). Despite their importance in sterol synthesis and removal of toxic sterol intermediates, cytochrome b5 and P450 oxidoreductase are the only known proteins that interact with and control the levels of cytochrome P450 enzymes (<xref ref-type="bibr" rid="B62">Hughes et al., 2007b</xref>; reviewed in <xref ref-type="bibr" rid="B99">Pandey and Fl&#x00FC;ck, 2013</xref>; reviewed in <xref ref-type="bibr" rid="B115">Schenkman and Jansson, 2003</xref>). In fission yeast, the damage response protein Dap1 physically interacts with both Erg5 and Erg11 and is necessary for normal sterol levels (<xref ref-type="bibr" rid="B62">Hughes et al., 2007b</xref>). This physical interaction requires heme binding and a stable complex formation between Dap1 and P450 enzymes. Mutant cells lacking Dap1 accumulate sterol intermediates and lower levels of ergosterol (<xref ref-type="bibr" rid="B62">Hughes et al., 2007b</xref>).</p>
<p>In <italic>A. fumigatus</italic>, sequence similarity searches led to the identification and characterization of three Dap proteins, DapA-C with antagonistic functions. A DapA null mutant is hypersensitive to itraconazole, whereas a DapC null mutant is more resistant compared to the wild type strain. This sensitivity may stem from the fact that abnormal levels of sterols accumulate in Dap genetic null mutants. A DapA null mutant accumulates lower ergosterol levels and a subsequent increase in levels of ergosta-5,7,24(28)- trienol and ergosta 5,7 dienol indicating a blockage at Erg5 (cytochrome p450 desaturase) (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>). The current model of Dap protein mediated regulation of sterol biosynthesis suggests DapA is necessary for stability of Erg5 and Cyp51A and loss of DapA leads to degradation of Cyp51B. Heme binding may be critical for DapA mediated stability of Erg5 and Cyp51A but not Cyp51B. Where DapA is necessary for function of P450 enzymes, DapB and DapC have antagonistic role through iron binding. DapB and DapC are predicted to irreversibly bind iron affecting the local iron concentration and thereby altering heme-dependent P450 enzyme function (<xref ref-type="bibr" rid="B123">Song et al., 2016</xref>). The presence of multiple Dap proteins with antagonistic functions allows complex regulation between sterol synthesis and iron availability. As Dap proteins control levels of P450 enzymes, targeting DapA might provide a novel therapeutic target to treat azole resistant cases of IA and or potentiate the efficacy of existing triazoles targeting Cyp51 enzymes.</p>
</sec>
<sec><title>ER Stress and Sterol Levels</title>
<p>Stress conditions can overwhelm ER capacity to correctly fold proteins that are destined for the membrane and cytosol. Perturbation in lipid synthesis is known to activate the Unfolded Protein Response (UPR) in <italic>S. cerevisiae</italic> and <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B104">Pineau et al., 2009</xref>; <xref ref-type="bibr" rid="B57">Han et al., 2010</xref>; reviewed in <xref ref-type="bibr" rid="B137">Volmer and Ron, 2015</xref>). The UPR pathway alleviates ER stress by balancing the proteins entering the ER for folding and the rate of ER protein folding capacity (reviewed in <xref ref-type="bibr" rid="B92">Moore and Hollien, 2012</xref>). Proteins that fail to fold correctly are degraded by a proteasome-mediated degradation pathway called ER-associated degradation (ERAD) (reviewed in <xref ref-type="bibr" rid="B134">Tsai and Weissman, 2010</xref>; reviewed in <xref ref-type="bibr" rid="B138">Wang and Kaufman, 2014</xref>). Mutants defective in ERAD constitutively activate the UPR, indicating regulatory crosstalk between these two pathways (<xref ref-type="bibr" rid="B133">Travers et al., 2000</xref>). <italic>A. fumigatus</italic> detects ER stress via the ER stress sensor IreA, which activates HacA &#x2013; the major regulator of the UPR (<xref ref-type="bibr" rid="B44">Feng et al., 2011</xref>). Ergosterol levels are negatively affected in both <italic>ireA</italic> and <italic>hacA</italic> null mutants and sterol intermediates accumulate in &#x0394;<italic>hrdA</italic>, a strain with a deficient ERAD pathway (<xref ref-type="bibr" rid="B44">Feng et al., 2011</xref>; <xref ref-type="bibr" rid="B74">Krishnan et al., 2013</xref>). This increase in sterol intermediates in &#x0394;<italic>hrdA</italic> might be the result of HMG CoA reductase turnover as Hrd1 is required for degradation of HMG CoA reductase in yeast (<xref ref-type="bibr" rid="B56">Hampton et al., 1996</xref>). Interestingly, &#x0394;<italic>hrdA</italic> is resistant to voriconazole compared to the WT strain, although mRNA levels of <italic>cyp51A</italic> and <italic>cyp51B</italic> are not different in these two strains (<xref ref-type="bibr" rid="B74">Krishnan et al., 2013</xref>). While the ERAD pathway appears dispensable for virulence in <italic>A. fumigatus</italic>, mutants that lack the UPR regulators <italic>ireA</italic> and <italic>hacA</italic> show significant virulence attenuation in murine models of IPA (<xref ref-type="bibr" rid="B111">Richie et al., 2009</xref>; <xref ref-type="bibr" rid="B44">Feng et al., 2011</xref>; <xref ref-type="bibr" rid="B74">Krishnan et al., 2013</xref>).</p>
<p>Intriguingly, like the SREBP pathway, the UPR is involved in hypoxia and iron stress responses in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B44">Feng et al., 2011</xref>; reviewed in <xref ref-type="bibr" rid="B51">Grahl et al., 2012</xref>; reviewed in <xref ref-type="bibr" rid="B73">Krishnan and Askew, 2014</xref>). This raises an interesting question of interplay between the UPR and SREBP activation in <italic>A. fumigatus</italic> given also that SrbA is an ER resident protein. It is not clear if SREBP activation requires the UPR, as hypoxia is known to activate UPR in tumors (<xref ref-type="bibr" rid="B43">Feldman et al., 2005</xref>; reviewed in <xref ref-type="bibr" rid="B112">Romero-Ramirez et al., 2004</xref>; <xref ref-type="bibr" rid="B72">Koumenis and Wouters, 2006</xref>). In support of this hypothesis, a mechanism by which the UPR is activated in response to lipid stress is different compared to protein misfolding activation, and <italic>ireA</italic> mediated hypoxia fitness is <italic>hacA</italic> independent in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B44">Feng et al., 2011</xref>; <xref ref-type="bibr" rid="B77">Lajoie et al., 2012</xref>). As UPR mutants &#x0394;<italic>hacA</italic> and &#x0394;<italic>ireA</italic> have increased sensitivity to azoles and reduced total ergosterol content (<xref ref-type="bibr" rid="B111">Richie et al., 2009</xref>; <xref ref-type="bibr" rid="B44">Feng et al., 2011</xref>), future research should elucidate whether the role of UPR in mediating azole sensitivity is SREBP dependent or independent. Also, the role of the UPR pathway in azole resistance needs further exploration. This provides a novel genetic opportunity to decipher the link between the UPR, SREBPs and lipid homeostasis and highlights a potential therapeutic opportunity to target the UPR and/or SREBP pathway in <italic>A. fumigatus</italic>.</p>
</sec>
<sec><title>Iron Levels Regulate Ergosterol Levels in <italic>A. fumigatus</italic></title>
<p>Iron is a major cofactor for essential life processes and is indispensable for growth of microbes including <italic>A. fumigatus</italic> (reviewed in <xref ref-type="bibr" rid="B29">Chung et al., 2012</xref>; reviewed in <xref ref-type="bibr" rid="B55">Haas, 2012</xref>; reviewed in <xref ref-type="bibr" rid="B67">Kaplan and Kaplan, 2009</xref>). Microbes have elegant strategies to acquire iron under iron deplete conditions such as in the tissue microenvironments of the host (<xref ref-type="bibr" rid="B117">Schrettl et al., 2007</xref>, <xref ref-type="bibr" rid="B118">2008</xref>). Under these conditions, <italic>A. fumigatus</italic> relies mainly on siderophore production for iron acquisition (<xref ref-type="bibr" rid="B116">Schrettl et al., 2004</xref>). SrbA is required for production of siderophores and fitness in low iron liquid environments (<xref ref-type="bibr" rid="B13">Blatzer et al., 2011</xref>). There is a direct correlation between iron availability and sterol levels in <italic>A. fumigatus</italic> and this is mediated in part by SrbA (<xref ref-type="bibr" rid="B13">Blatzer et al., 2011</xref>; <xref ref-type="bibr" rid="B146">Yasmin et al., 2012</xref>). Mevalonate is a key metabolic intermediate between ergosterol and siderophore production, and its fate is dependent on iron availability. Under iron replete conditions, mevalonate is preferentially converted to ergosterol, however, in iron deplete conditions mevalonate is converted to the siderophore TAFC. In iron deplete conditions, ergosterol levels are reduced by &#x223C;50% and sterol intermediates accumulate rendering <italic>A. fumigatus</italic> more sensitive to voriconazole (<xref ref-type="bibr" rid="B146">Yasmin et al., 2012</xref>). Consequently, these data suggest that HMG CoA reductase is a potential target for treatment of IA. Cholesterol lowering agents known as statins target HMG CoA reductase (reviewed in <xref ref-type="bibr" rid="B131">Tobert, 2003</xref>). Statins have fungicidal activity against <italic>A. fumigatus</italic>, however at concentrations higher than safe physiological levels used to control cholesterol in humans (<xref ref-type="bibr" rid="B108">Qiao et al., 2007</xref>). In plants, bacteria and protozoa, a non-mevalonate pathway (NMP) exists for isoprenoid biosynthesis (reviewed in <xref ref-type="bibr" rid="B65">Hunter, 2007</xref>; <xref ref-type="bibr" rid="B98">Odom, 2011</xref>). As NMP is not reported in <italic>A. fumigatus</italic> and homologs of enzymes in NMP are absent in <italic>A. fumigatus</italic>, modifying current statins or development of new drugs to target mevalonate production at clinically relevant concentrations needs further exploration.</p>
</sec>
</sec>
<sec><title>Azole Drug Resistance in <italic>A. fumigatus</italic></title>
<p><italic>Aspergillus fumigatus</italic> resistance to azoles was first reported in 1997 (<xref ref-type="bibr" rid="B37">Denning et al., 1997</xref>), and is an emerging area of major concern in the fight against aspergillosis (reviewed in <xref ref-type="bibr" rid="B86">Mayr and Lass-Fl&#x00F6;rl, 2011</xref>). Azole resistant isolates have been reported in Europe, Middle east, Asia, Africa, Australia and the USA (<xref ref-type="bibr" rid="B141">Wiederhold et al., 2016</xref>). Molecular genotyping has revealed use of azole based fungicides to protect plants as a possible route of azole resistant <italic>A. fumigatus</italic> environmental isolate emergence (<xref ref-type="bibr" rid="B121">Snelders et al., 2009</xref>). The dominant resistance mechanism conferring resistance to pan-azole drugs consists of mutations in <italic>cyp51A</italic>, most notably at positions 54, 98, 138, 220 and 448 (reviewed in <xref ref-type="bibr" rid="B36">Denning and Perlin, 2011</xref>; <xref ref-type="bibr" rid="B26">Choi et al., 2014</xref>). These point mutations may alter the binding affinity of azoles to Cyp51A (reviewed in <xref ref-type="bibr" rid="B100">Parker et al., 2014</xref>). Along with mutations in the amino acid encoding region, the presence of tandem repeats (TR) in the untranslated region (UTR) of <italic>cyp51A</italic> also drives an increase in <italic>cyp51A</italic> levels (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>) (<xref ref-type="bibr" rid="B122">Snelders et al., 2011</xref>; <xref ref-type="bibr" rid="B53">Gsaller et al., 2016</xref>). Various tandem repeats have been identified in the UTR of <italic>cyp51</italic> viz., TR<sub>34</sub>, TR<sub>46</sub> and TR<sub>53</sub>. TR<sub>34</sub> and TR<sub>46</sub> are often found in association with mutations in the <italic>cyp51</italic>A gene and the most commonly detected resistance categories to date are TR<sub>34</sub>/L98H, TR<sub>46</sub>/Y121F/T289A (reviewed in <xref ref-type="bibr" rid="B136">Verweij et al., 2016</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p><bold>Regulation of <italic>cyp51A</italic> expression in <italic>A. fumigatus</italic>.</bold> In azole susceptible isolates, two SRE elements and one CBC binding motif is present in the promoter region of <italic>cyp51A</italic>. Binding of SrbA to SREs positively regulates <italic>cyp51A</italic> expression while binding of the CBC to the CGAAT motif negatively regulates expression. Azole challenge (arrow) also positively regulates <italic>cyp51a</italic> expression. In strains containing either a TR34 promoter repeat or TR46 promoter repeat, SRE elements and CBC binding motifs are duplicated and SrbA effectively binds SREs in the duplicated region, thereby increasing <italic>cyp51A</italic> expression. Mutation in the HapE (P88L) subunit of the CBC lowers the affinity of the CBC to the CGAAT motif thereby inhibiting negative regulation of <italic>cyp51A</italic> expression. Solid lines depict experimentally validated results, whereas dotted lines indicate hypotheses which need further validation. Importantly, additional regulatory factors are likely in play at this important gene promoter.</p></caption>
<graphic xlink:href="fmicb-08-00092-g003.tif"/>
</fig>
<p>A second azole resistance mechanism affecting <italic>cyp51</italic> mRNA levels, exists in <italic>A. fumigatus</italic>. Whole genome sequencing (WGS) of isolates that acquired de novo azole resistance revealed a mutation in the <italic>hapE</italic> gene causing a P88L mutation in the amino acid sequence (<xref ref-type="bibr" rid="B23">Camps et al., 2012</xref>). HapE, along with HapB and HapC, is a subunit of the CCAAT binding transcription factor complex (CBC) (<xref ref-type="bibr" rid="B58">Hortschansky et al., 2015</xref>). A CGAAT motif is present in the 5&#x2032; UTR of <italic>cyp51A</italic> of <italic>A. fumigatus</italic> and the P88L mutation in HapE increases expression of <italic>cyp51A</italic> in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B53">Gsaller et al., 2016</xref>).</p>
<p>Recently, an additional understanding of the molecular mechanisms of TR<sub>34</sub> associated azole resistance was elucidated. In an azole resistant strain with the TR<sub>34</sub> mutation, the duplication of the tandem repeat (TR) causes duplication of SREs in the UTR of <italic>cyp51A.</italic> SrbA binding to SREs in the TR is responsible for increased mRNA levels of <italic>cyp51A</italic>. However, the CBC, which canonically binds the CCAAT motif, binds a degenerate CGAAT motif in the UTR of <italic>cyp51</italic> and negatively regulates its expression. Consequently, in strains with a mutation in the HapE subunit (HapE<sup>P88L</sup>), CBC binding to the CGAAT motif is significantly reduced allowing increased SrbA SRE binding and increased levels of <italic>cyp51A</italic>. Expression of <italic>cyp51A</italic> is further increased when the TR duplicate is present increasing SRE motifs in the <italic>cyp51A</italic> UTR region (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>). Not surprisingly given its role in direct regulation of <italic>cyp51A</italic> levels, loss of SrbA in a TR<sub>34</sub> azole resistant strain reverses the resistance to azoles and thus provides a potential target to increase the efficacy of azoles against resistant strains (<xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>; <xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>; <xref ref-type="bibr" rid="B53">Gsaller et al., 2016</xref>).</p>
<p>It is not known at this time if regulation of <italic>cyp51A</italic>, a heme-iron containing enzyme, by the CBC is iron dependent. It is fair to speculate that under iron deplete conditions the CBC will down-regulate <italic>cyp51</italic> expression, thereby optimizing levels of ergosterol and siderophore production under iron deplete conditions. As stated above under low iron conditions, formation of TAFC is favored over ergosterol. This provides a complex layer of regulation and cross talk between iron acquisition and sterol biosynthesis pathways in <italic>Aspergillus fumigatus</italic> that is dependent on <italic>hapX</italic>, the CBC, <italic>cyp51</italic>, DAP proteins, and SrbA. Other recently reported azole resistance mechanisms include overexpression of <italic>cyp51A</italic>, point mutations in <italic>cyp51B</italic> and over expression of drug transporters leading to efflux of drugs (reviewed in <xref ref-type="bibr" rid="B100">Parker et al., 2014</xref>). The molecular dissection of the TF interplay at the <italic>cyp51A</italic> promoter is an important advance in understanding azole-<italic>Aspergillus</italic> interactions and warrants further in depth investigation into the factors involved in controlling this critical step in ergosterol biosynthesis.</p>
<p>Recently, an elegant approach that utilized the sexual cycle of <italic>A. fumigatus</italic> identified additional novel loci associated with azole drug resistance. <xref ref-type="bibr" rid="B82">Losada et al. (2015)</xref> identified mutations in <italic>cyp51A</italic>, multi-drug transporters, HMG-CoA reductase and interestingly <italic>erg25</italic> from an <italic>in vitro</italic> drug selection experiment. In addition, <xref ref-type="bibr" rid="B1">Abdolrasouli et al. (2015)</xref> recently used a WGS approach to better understanding azole resistance mechanisms in a panel of 24 isolates collected across geographic locations. Their study further emphasizes the power of WGS to identify potential azole resistance mechanisms and paves the way for robust genome-wide association (GWAS) studies in this important human pathogen.</p>
<sec><title>Role of Hsp90</title>
<p>Hsp90 is molecular chaperone that regulates diverse client proteins, many of which are involved in cell signaling (<xref ref-type="bibr" rid="B30">Cowen and Lindquist, 2005</xref>). Hsp90 is conserved across eukaryotes and gene deletion strategies reveal it is necessary for survival in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B79">Lamoth et al., 2014</xref>). In <italic>S. cerevisiae</italic> and <italic>C. albicans</italic>, Hsp90 function is critical for the emergence of azole resistance. Hsp90 mediated azole resistance is associated with loss of <italic>erg3</italic> function, leading to accumulation of ergosta-7,22-dienol in <italic>C. albicans</italic>. This prevents accumulation of toxic 14-&#x03B1;-methyl-3,6-diol. This allows, alternatively, 14-&#x03B1; methyl fecosterol to incorporate into the membrane and circumvent <italic>cyp51</italic> mediated azole activity (<xref ref-type="bibr" rid="B84">Martel et al., 2010</xref>; reviewed in <xref ref-type="bibr" rid="B120">Shapiro et al., 2011</xref>). Thus, it is plausible that Hsp90 directly or indirectly affects the ergosterol biosynthetic pathway in <italic>A. fumigatus</italic>. Mutagenesis experiments revealed deacetylation of K27 is necessary for Hsp90 mediated azole resistance in <italic>A. fumigatus</italic>, however no positive interaction was observed between a lysine deacetylase inhibitor and azole drugs in <italic>A. fumigatus</italic> (<xref ref-type="bibr" rid="B79">Lamoth et al., 2014</xref>). As <italic>erg3</italic> associated azole resistance is reported for <italic>C. albicans</italic> (<xref ref-type="bibr" rid="B68">Kelly et al., 1997</xref>) and has not been identified or reported in clinical azole resistance strains of <italic>A. fumigatus</italic> to date, further research is needed to determine the role of Hsp90 on long-term azole therapies for IA and to completely understand the role of Hsp90 in azole mediated drug resistance.</p>
</sec>
</sec>
<sec><title>Future Directions</title>
<p>The combination of the increasing incidence of aspergillosis across multiple diverse patient populations and the emergence of azole drug resistance highlights the need for therapeutic advances. More in depth research is needed on mechanisms of sterol biosynthesis in <italic>A. fumigatus</italic> given its importance in fungal viability and interactions with clinically relevant antifungal drugs. A common theme in the mechanisms of sterol biosynthesis studied to date is the need for oxygen and iron highlighted by the critical role of the hypoxia and sterol biosynthesis transcriptional regulator SrbA and co-regulatory factors such as the CBC. Given the critical role of SrbA in drug tolerance and susceptibility and its virulence profile <italic>in vivo</italic>, a unique opportunity exists to harness this pathway for therapeutic development (<xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>).</p>
<p>While many approaches are feasible, one inexpensive and clinically available approach is to test the hypothesis that alleviating tissue hypoxia can improve disease outcomes through alteration of the SrbA pathway <italic>in vivo</italic>. HBO (100% O<sub>2</sub> at 2.5&#x2013;3.5ATA) has been used clinically to treat hypoxia and increase oxygen levels in tissues in multiple disease settings (<xref ref-type="bibr" rid="B75">Kurt et al., 2015</xref>; <xref ref-type="bibr" rid="B71">Kolpen et al., 2016</xref>; reviewed in <xref ref-type="bibr" rid="B130">Thom, 2011</xref>). Importantly, multiple lines of evidence and preliminary results suggest synergy between HBO and action of anti-fungal drugs in some disease settings (<xref ref-type="bibr" rid="B48">Garcia-Covarrubias et al., 2002</xref>; <xref ref-type="bibr" rid="B66">John et al., 2005</xref>; <xref ref-type="bibr" rid="B119">Segal et al., 2007</xref>). It is important to note that MIC&#x2019;s of azoles including voriconazole against <italic>A. fumigatus</italic> were similar under normoxic and hypoxic conditions (<xref ref-type="bibr" rid="B12">Binder et al., 2015</xref>). This might be because SREBPs have evolved to sense sterol levels, thus increasing expression of ergosterol biosynthetic genes under hypoxic conditions (<xref ref-type="bibr" rid="B14">Blosser and Cramer, 2012</xref>; <xref ref-type="bibr" rid="B28">Chung et al., 2014</xref>). It is plausible that HBO can directly inhibit activation of the SrbA pathway <italic>in vivo</italic> in <italic>A. fumigatus</italic> and thereby enhance the efficacy of azole antifungal drugs, overcome SrbA mediated drug resistance due to over expression of <italic>cyp51A</italic> (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>) (<xref ref-type="bibr" rid="B53">Gsaller et al., 2016</xref>), and mitigate fungal proliferation. Ergosterol can regulate its own levels through negative feedback regulation in <italic>S. cerevisiae</italic> (<xref ref-type="bibr" rid="B24">Casey et al., 1992</xref>). Thus, it is possible that under HBO conditions, increased ergosterol levels would inhibit the pathway and increase sensitivity to azoles. Future research should determine the sterol profile under HBO conditions and if differential sterol profiles play a role in the observed synergy between HBO and anti-fungal drugs in some species. It is possible HBO targets an additional pathway which compliments the targeting of ergosterol. HBO has been shown to increase oxygen free radicals and can increase the activity of immune cells against fungal infections (<xref ref-type="bibr" rid="B5">Almzaiel et al., 2013</xref>). HBO is also known to increase angiogenesis and play a role in wound healing (reviewed in <xref ref-type="bibr" rid="B91">Moen and Stuhr, 2012</xref>). While HBO may or may not prove to be clinically relevant in the context of IPA, similar approaches to alter the induction of genetic networks critical for sterol biosynthesis and azole drug susceptibility is an important and exciting area of future research.</p>
<p>Other potential therapeutic options include prevention of SrbA cleavage and activation through a direct targeting approach. The genetic null mutants of the strains lacking <italic>srbA</italic>, members of the Dsc complex and proteases encoding <italic>rbdB</italic> and <italic>sppA</italic> genes phenocopy the <italic>srbA</italic> null mutant (<xref ref-type="bibr" rid="B143">Willger et al., 2008</xref>, <xref ref-type="bibr" rid="B142">2012</xref>; <xref ref-type="bibr" rid="B8">Bat-Ochir et al., 2016</xref>; <xref ref-type="bibr" rid="B38">Dhingra et al., 2016</xref>). Thus, screening and identification of small molecules that prevent cleavage and activation of SrbA either by binding the regulatory proteins or inhibiting protein-protein interactions may prove to be beneficial in achieving successful outcomes for IPA. To achieve these goals, additional research is needed to provide a deeper understanding of the underlying molecular mechanisms to identify therapeutic opportunities.</p>
</sec>
<sec><title>Author Contributions</title>
<p>All authors listed, have made substantial, direct and intellectual contribution to the work, and approved it for publication.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This work, including the efforts of RC, was funded by HHS (NIH) National Institute of Allergy and Infectious Diseases (NIAID) (R01AI081838). RC holds an Investigators in the Pathogenesis of Infectious Disease Award from the Burroughs Wellcome Fund. SD was supported in part by a Cystic Fibrosis Research Development Program Award (STANTO07R0).</p>
</fn>
</fn-group>
<ref-list>
<title>References</title>
<ref id="B1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Abdolrasouli</surname> <given-names>A.</given-names></name> <name><surname>Rhodes</surname> <given-names>J.</given-names></name> <name><surname>Beale</surname> <given-names>M. A.</given-names></name> <name><surname>Hagen</surname> <given-names>F.</given-names></name> <name><surname>Rogers</surname> <given-names>T. R.</given-names></name> <name><surname>Chowdhary</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Genomic context of azole resistance mutations in <italic>Aspergillus fumigatus</italic> determined using whole-genome sequencing.</article-title> <source><italic>MBio</italic></source> <volume>6</volume>:<issue>e00536</issue>. <pub-id pub-id-type="doi">10.1128/mBio.00536-15</pub-id></citation></ref>
<ref id="B2"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Abraham</surname> <given-names>O. C.</given-names></name> <name><surname>Manavathu</surname> <given-names>E. K.</given-names></name> <name><surname>Cutright</surname> <given-names>J. L.</given-names></name> <name><surname>Chandrasekar</surname> <given-names>P. H.</given-names></name></person-group> (<year>1999</year>). <article-title>In vitro susceptibilities of <italic>Aspergillus</italic> species to voriconazole, itraconazole, and amphotericin B.</article-title> <source><italic>Diagn. Microbiol. Infect. Dis.</italic></source> <volume>33</volume> <fpage>7</fpage>&#x2013;<lpage>11</lpage>. <pub-id pub-id-type="doi">10.1016/S0732-8893(98)00102-3</pub-id></citation></ref>
<ref id="B3"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Alcazar-Fuoli</surname> <given-names>L.</given-names></name> <name><surname>Mellado</surname> <given-names>E.</given-names></name> <name><surname>Garcia-Effron</surname> <given-names>G.</given-names></name> <name><surname>Buitrago</surname> <given-names>M. J.</given-names></name> <name><surname>Lopez</surname> <given-names>J. F.</given-names></name> <name><surname>Grimalt</surname> <given-names>J. O.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title><italic>Aspergillus fumigatus</italic> C-5 sterol desaturases Erg3A and Erg3B: role in sterol biosynthesis and antifungal drug susceptibility.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>50</volume> <fpage>453</fpage>&#x2013;<lpage>460</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.50.2.453-460.2006</pub-id></citation></ref>
<ref id="B4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Alcazar-Fuoli</surname> <given-names>L.</given-names></name> <name><surname>Mellado</surname> <given-names>E.</given-names></name> <name><surname>Garcia-Effron</surname> <given-names>G.</given-names></name> <name><surname>Lopez</surname> <given-names>J. F.</given-names></name> <name><surname>Grimalt</surname> <given-names>J. O.</given-names></name> <name><surname>Cuenca-Estrella</surname> <given-names>J. M.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>Ergosterol biosynthesis pathway in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Steroids</italic></source> <volume>73</volume> <fpage>339</fpage>&#x2013;<lpage>347</lpage>. <pub-id pub-id-type="doi">10.1016/j.steroids.2007.11.005</pub-id></citation></ref>
<ref id="B5"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Almzaiel</surname> <given-names>A. J.</given-names></name> <name><surname>Billington</surname> <given-names>R.</given-names></name> <name><surname>Smerdon</surname> <given-names>G.</given-names></name> <name><surname>Moody</surname> <given-names>A. J.</given-names></name></person-group> (<year>2013</year>). <article-title>Effects of hyperbaric oxygen treatment on antimicrobial function and apoptosis of differentiated HL-60 (neutrophil-like) cells.</article-title> <source><italic>Life Sci.</italic></source> <volume>93</volume> <fpage>125</fpage>&#x2013;<lpage>131</lpage>. <pub-id pub-id-type="doi">10.1016/j.lfs.2013.06.003</pub-id></citation></ref>
<ref id="B6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Apel</surname> <given-names>K.</given-names></name> <name><surname>Hirt</surname> <given-names>H.</given-names></name></person-group> (<year>2004</year>). <article-title>Reactive oxygen species: metabolism, oxidative stress, and signal transduction.</article-title> <source><italic>Annu. Rev. Plant Biol.</italic></source> <volume>55</volume> <fpage>373</fpage>&#x2013;<lpage>399</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.arplant.55.031903.141701</pub-id></citation></ref>
<ref id="B7"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bard</surname> <given-names>M.</given-names></name> <name><surname>Lees</surname> <given-names>N. D.</given-names></name> <name><surname>Turi</surname> <given-names>T.</given-names></name> <name><surname>Craft</surname> <given-names>D.</given-names></name> <name><surname>Cofrin</surname> <given-names>L.</given-names></name> <name><surname>Barbuch</surname> <given-names>R.</given-names></name><etal/></person-group> (<year>1993</year>). <article-title>Sterol synthesis and viability of erg11 (cytochrome P450 lanosterol demethylase) mutations in <italic>Saccharomyces cerevisiae</italic> and <italic>Candida albicans</italic>.</article-title> <source><italic>Lipids</italic></source> <volume>28</volume> <fpage>963</fpage>&#x2013;<lpage>967</lpage>. <pub-id pub-id-type="doi">10.1007/BF02537115</pub-id></citation></ref>
<ref id="B8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bat-Ochir</surname> <given-names>C.</given-names></name> <name><surname>Kwak</surname> <given-names>J. Y.</given-names></name> <name><surname>Koh</surname> <given-names>S. K.</given-names></name> <name><surname>Jeon</surname> <given-names>M. H.</given-names></name> <name><surname>Chung</surname> <given-names>D.</given-names></name> <name><surname>Lee</surname> <given-names>Y. W.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>The signal peptide peptidase SppA is involved in sterol regulatory element-binding protein cleavage and hypoxia adaptation in <italic>Aspergillus nidulans</italic>.</article-title> <source><italic>Mol. Microbiol.</italic></source> <volume>100</volume> <fpage>635</fpage>&#x2013;<lpage>655</lpage>. <pub-id pub-id-type="doi">10.1111/mmi.13341</pub-id></citation></ref>
<ref id="B9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bengoechea-Alonso</surname> <given-names>M. T.</given-names></name> <name><surname>Ericsson</surname> <given-names>J.</given-names></name></person-group> (<year>2009</year>). <article-title>A phosphorylation cascade controls the degradation of active SREBP1.</article-title> <source><italic>J. Biol. Chem..</italic></source> <volume>284</volume> <fpage>5885</fpage>&#x2013;<lpage>5895</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M807906200</pub-id></citation></ref>
<ref id="B10"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Benveniste</surname> <given-names>P.</given-names></name></person-group> (<year>2004</year>). <article-title>Biosynthesis and accumulation of sterols.</article-title> <source><italic>Annu. Rev. Plant Biol.</italic></source> <volume>55</volume> <fpage>429</fpage>&#x2013;<lpage>457</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.arplant.55.031903.141616</pub-id></citation></ref>
<ref id="B11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bergren</surname> <given-names>D. R.</given-names></name> <name><surname>Beckman</surname> <given-names>D. L.</given-names></name></person-group> (<year>1975</year>). <article-title>Hyperbaric oxygen and pulmonary surface tension.</article-title> <source><italic>Aviat. Space Environ. Med.</italic></source> <volume>46</volume> <fpage>994</fpage>&#x2013;<lpage>995</lpage>.</citation></ref>
<ref id="B12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Binder</surname> <given-names>U.</given-names></name> <name><surname>Maurer</surname> <given-names>E.</given-names></name> <name><surname>Lackner</surname> <given-names>M.</given-names></name> <name><surname>Lass-Fl&#x00F6;rl</surname> <given-names>C.</given-names></name></person-group> (<year>2015</year>). <article-title>Effect of reduced oxygen on the antifungal susceptibility of clinically relevant <italic>Aspergilli</italic>.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>59</volume> <fpage>1806</fpage>&#x2013;<lpage>1810</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.04204-14</pub-id></citation></ref>
<ref id="B13"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Blatzer</surname> <given-names>M.</given-names></name> <name><surname>Barker</surname> <given-names>B. M.</given-names></name> <name><surname>Willger</surname> <given-names>S. D.</given-names></name> <name><surname>Beckmann</surname> <given-names>N.</given-names></name> <name><surname>Blosser</surname> <given-names>S. J.</given-names></name> <name><surname>Cornish</surname> <given-names>E. J.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>SREBP coordinates iron and ergosterol homeostasis to mediate triazole drug and hypoxia responses in the human fungal pathogen <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>PLoS Genet.</italic></source> <volume>7</volume>:<issue>e1002374</issue>. <pub-id pub-id-type="doi">10.1371/journal.pgen.1002374</pub-id></citation></ref>
<ref id="B14"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Blosser</surname> <given-names>S. J.</given-names></name> <name><surname>Cramer</surname> <given-names>R. A.</given-names></name></person-group> (<year>2012</year>). <article-title>SREBP-dependent triazole susceptibility in <italic>Aspergillus fumigatus</italic> is mediated through direct transcriptional regulation of erg11a (cyp51a).</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>56</volume> <fpage>248</fpage>&#x2013;<lpage>257</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.05027-11</pub-id></citation></ref>
<ref id="B15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Blosser</surname> <given-names>S. J.</given-names></name> <name><surname>Merriman</surname> <given-names>B.</given-names></name> <name><surname>Grahl</surname> <given-names>N.</given-names></name> <name><surname>Chung</surname> <given-names>D.</given-names></name> <name><surname>Cramer</surname> <given-names>R. A.</given-names></name></person-group> (<year>2014</year>). <article-title>Two C4-sterol methyl oxidases (Erg25) catalyse ergosterol intermediate demethylation and impact environmental stress adaptation in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Microbiology</italic></source> <volume>160</volume> <fpage>2492</fpage>&#x2013;<lpage>2506</lpage>. <pub-id pub-id-type="doi">10.1099/mic.0.080440-0</pub-id></citation></ref>
<ref id="B16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brown</surname> <given-names>A. J.</given-names></name> <name><surname>Sun</surname> <given-names>L.</given-names></name> <name><surname>Feramisco</surname> <given-names>J. D.</given-names></name> <name><surname>Brown</surname> <given-names>M. S.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name></person-group> (<year>2002</year>). <article-title>Cholesterol addition to ER membranes alters conformation of SCAP, the SREBP escort protein that regulates cholesterol metabolism.</article-title> <source><italic>Mol. Cell.</italic></source> <volume>10</volume> <fpage>237</fpage>&#x2013;<lpage>245</lpage>. <pub-id pub-id-type="doi">10.1016/S1097-2765(02)00591-9</pub-id></citation></ref>
<ref id="B17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brown</surname> <given-names>G. D.</given-names></name> <name><surname>Denning</surname> <given-names>D. W.</given-names></name> <name><surname>Gow</surname> <given-names>N. A.</given-names></name> <name><surname>Levitz</surname> <given-names>S. M.</given-names></name> <name><surname>Netea</surname> <given-names>M. G.</given-names></name> <name><surname>White</surname> <given-names>T. C.</given-names></name></person-group> (<year>2012</year>). <article-title>Hidden killers: human fungal infections.</article-title> <source><italic>Sci. Transl. Med.</italic></source> <volume>4</volume>:<issue>165rv13</issue>. <pub-id pub-id-type="doi">10.1126/scitranslmed.3004404</pub-id></citation></ref>
<ref id="B18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brown</surname> <given-names>M. S.</given-names></name> <name><surname>Dana</surname> <given-names>S. E.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name></person-group> (<year>1973</year>). <article-title>Regulation of 3-hydroxy-3-methylglutaryl coenzyme a reductase-activity in human fibroblasts by lipoproteins.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>70</volume> <fpage>2162</fpage>&#x2013;<lpage>2166</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.70.7.2162</pub-id></citation></ref>
<ref id="B19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brown</surname> <given-names>M. S.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name></person-group> (<year>1986</year>). <article-title>A receptor-mediated pathway for cholesterol homeostasis.</article-title> <source><italic>Science</italic></source> <volume>232</volume> <fpage>34</fpage>&#x2013;<lpage>47</lpage>. <pub-id pub-id-type="doi">10.1126/science.3513311</pub-id></citation></ref>
<ref id="B20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brown</surname> <given-names>M. S.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name></person-group> (<year>1997</year>). <article-title>The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor.</article-title> <source><italic>Cell</italic></source> <volume>89</volume> <fpage>331</fpage>&#x2013;<lpage>340</lpage>. <pub-id pub-id-type="doi">10.1016/S0092-8674(00)80213-5</pub-id></citation></ref>
<ref id="B21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Buchwald</surname> <given-names>H.</given-names></name> <name><surname>O&#x2019;Dea</surname> <given-names>T. J.</given-names></name> <name><surname>Menchaca</surname> <given-names>H. J.</given-names></name> <name><surname>Michalek</surname> <given-names>V. N.</given-names></name> <name><surname>Rohde</surname> <given-names>T. D.</given-names></name></person-group> (<year>2000</year>). <article-title>Effect of plasma cholesterol on red blood cell oxygen transport.</article-title> <source><italic>Clin. Exp. Pharmacol. Physiol.</italic></source> <volume>27</volume> <fpage>951</fpage>&#x2013;<lpage>955</lpage>. <pub-id pub-id-type="doi">10.1046/j.1440-1681.2000.03383.x</pub-id></citation></ref>
<ref id="B22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Burg</surname> <given-names>J. S.</given-names></name> <name><surname>Powell</surname> <given-names>D. W.</given-names></name> <name><surname>Chai</surname> <given-names>R.</given-names></name> <name><surname>Hughes</surname> <given-names>A. L.</given-names></name> <name><surname>Link</surname> <given-names>A. J.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2008</year>). <article-title>Insig regulates Hmg-coA reductase by controlling enzyme phosphorylation in fission yeast.</article-title> <source><italic>Cell Metab.</italic></source> <volume>8</volume> <fpage>522</fpage>&#x2013;<lpage>531</lpage>. <pub-id pub-id-type="doi">10.1016/j.cmet.2008.09.004</pub-id></citation></ref>
<ref id="B23"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Camps</surname> <given-names>S. M.</given-names></name> <name><surname>Dutilh</surname> <given-names>B. E.</given-names></name> <name><surname>Arendrup</surname> <given-names>M. C.</given-names></name> <name><surname>Rijs</surname> <given-names>A. J.</given-names></name> <name><surname>Snelders</surname> <given-names>E.</given-names></name> <name><surname>Huynen</surname> <given-names>M. A.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Discovery of a HapE mutation that causes azole resistance in <italic>Aspergillus fumigatus</italic> through whole genome sequencing and sexual crossing.</article-title> <source><italic>PLoS ONE</italic></source> <volume>7</volume>:<issue>e50034</issue>. <pub-id pub-id-type="doi">10.1371/journal.pone.0050034</pub-id></citation></ref>
<ref id="B24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Casey</surname> <given-names>W. M.</given-names></name> <name><surname>Keesler</surname> <given-names>G. A.</given-names></name> <name><surname>Parks</surname> <given-names>L. W.</given-names></name></person-group> (<year>1992</year>). <article-title>Regulation of partitioned sterol biosynthesis in <italic>Saccharomyces cerevisiae</italic>.</article-title> <source><italic>J. Bacteriol.</italic></source> <volume>174</volume> <fpage>7283</fpage>&#x2013;<lpage>7288</lpage>. <pub-id pub-id-type="doi">10.1128/jb.174.22.7283-7288.1992</pub-id></citation></ref>
<ref id="B25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chang</surname> <given-names>Y. C.</given-names></name> <name><surname>Bien</surname> <given-names>C. M.</given-names></name> <name><surname>Lee</surname> <given-names>H.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name> <name><surname>Kwon-Chung</surname> <given-names>K. J.</given-names></name></person-group> (<year>2007</year>). <article-title>Sre1p, a regulator of oxygen sensing and sterol homeostasis, is required for virulence in <italic>Cryptococcus neoformans</italic>.</article-title> <source><italic>Mol. Microbiol.</italic></source> <volume>64</volume> <fpage>614</fpage>&#x2013;<lpage>629</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2958.2007.05676.x</pub-id></citation></ref>
<ref id="B26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Choi</surname> <given-names>J. Y.</given-names></name> <name><surname>Podust</surname> <given-names>L. M.</given-names></name> <name><surname>Roush</surname> <given-names>W. R.</given-names></name></person-group> (<year>2014</year>). <article-title>Drug strategies targeting cyp51 in neglected tropical diseases.</article-title> <source><italic>Chem. Rev.</italic></source> <volume>114</volume> <fpage>11242</fpage>&#x2013;<lpage>11271</lpage>. <pub-id pub-id-type="doi">10.1021/cr5003134</pub-id></citation></ref>
<ref id="B27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chowdhary</surname> <given-names>A.</given-names></name> <name><surname>Kathuria</surname> <given-names>S.</given-names></name> <name><surname>Xu</surname> <given-names>J.</given-names></name> <name><surname>Meis</surname> <given-names>J. F.</given-names></name></person-group> (<year>2013</year>). <article-title>Emergence of azole-resistant <italic>Aspergillus fumigatus</italic> strains due to agricultural azole use creates an increasing threat to human health.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>9</volume>:<issue>e1003633</issue>. <pub-id pub-id-type="doi">10.1371/annotation/4ffcf1da-b180-4149-834c-9c723c5dbf9b</pub-id></citation></ref>
<ref id="B28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chung</surname> <given-names>D.</given-names></name> <name><surname>Barker</surname> <given-names>B. M.</given-names></name> <name><surname>Carey</surname> <given-names>C. C.</given-names></name> <name><surname>Merriman</surname> <given-names>B.</given-names></name> <name><surname>Werner</surname> <given-names>E. R.</given-names></name> <name><surname>Lechner</surname> <given-names>B. E.</given-names></name><etal/></person-group> (<year>2014</year>). <article-title>ChIP-seq and in vivo transcriptome analyses of the <italic>Aspergillus fumigatus</italic> SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>10</volume>:<issue>e1004487</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1004487</pub-id></citation></ref>
<ref id="B29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Chung</surname> <given-names>D.</given-names></name> <name><surname>Haas</surname> <given-names>H.</given-names></name> <name><surname>Cramer</surname> <given-names>R. A.</given-names></name></person-group> (<year>2012</year>). <article-title>Coordination of hypoxia adaptation and on homeostasis in human pathogenic fungi.</article-title> <source><italic>Front. Microbiol.</italic></source> <volume>3</volume>:<issue>381</issue>. <pub-id pub-id-type="doi">10.3389/fmicb.2012.00381</pub-id></citation></ref>
<ref id="B30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cowen</surname> <given-names>L. E.</given-names></name> <name><surname>Lindquist</surname> <given-names>S.</given-names></name></person-group> (<year>2005</year>). <article-title>Hsp90 potentiates the rapid evotution of new traits: drug resistance in diverse fungi.</article-title> <source><italic>Science</italic></source> <volume>309</volume> <fpage>2185</fpage>&#x2013;<lpage>2189</lpage>. <pub-id pub-id-type="doi">10.1126/science.1118370</pub-id></citation></ref>
<ref id="B31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>da Silva Ferreira</surname> <given-names>M. E.</given-names></name> <name><surname>Colombo</surname> <given-names>A. L.</given-names></name> <name><surname>Paulsen</surname> <given-names>I.</given-names></name> <name><surname>Goldman</surname> <given-names>G. H.</given-names></name></person-group> (<year>2005</year>). <article-title>The ergosterol biosynthesis pathway, transporter genes, and azole resistance in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Med. Mycol.</italic></source> <volume>43</volume> <fpage>S313</fpage>&#x2013;<lpage>S319</lpage>. <pub-id pub-id-type="doi">10.1080/13693780400029114</pub-id></citation></ref>
<ref id="B32"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>da Silva Ferreira</surname> <given-names>M. E.</given-names></name> <name><surname>Malavazi</surname> <given-names>I.</given-names></name> <name><surname>Savoldi</surname> <given-names>M.</given-names></name> <name><surname>Brakhage</surname> <given-names>A. A.</given-names></name> <name><surname>Goldman</surname> <given-names>M. H.</given-names></name> <name><surname>Kim</surname> <given-names>H. S.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title>Transcriptome analysis of <italic>Aspergillus fumigatus</italic> exposed to voriconazole.</article-title> <source><italic>Curr. Genet.</italic></source> <volume>50</volume> <fpage>32</fpage>&#x2013;<lpage>44</lpage>. <pub-id pub-id-type="doi">10.1007/s00294-006-0073-2</pub-id></citation></ref>
<ref id="B33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dannaoui</surname> <given-names>E.</given-names></name> <name><surname>Garcia-Hermoso</surname> <given-names>D.</given-names></name> <name><surname>Naccache</surname> <given-names>J. M.</given-names></name> <name><surname>Meneau</surname> <given-names>I.</given-names></name> <name><surname>Sanglard</surname> <given-names>D.</given-names></name> <name><surname>Bouges-Michel</surname> <given-names>C.</given-names></name><etal/></person-group> (<year>2006</year>). <article-title>Use of voriconazole in a patient with aspergilloma caused by an itraconazole-resistant strain of <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>J. Med. Microbiol.</italic></source> <volume>55(Pt. 10)</volume>, <fpage>1457</fpage>&#x2013;<lpage>1459</lpage>. <pub-id pub-id-type="doi">10.1099/jmm.0.46639-0</pub-id></citation></ref>
<ref id="B34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Datta</surname> <given-names>S.</given-names></name> <name><surname>Osborne</surname> <given-names>T. F.</given-names></name></person-group> (<year>2005</year>). <article-title>Activation domains from both monomers contribute to transcriptional stimulation by sterol regulatory element-binding protein dimers.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>280</volume> <fpage>3338</fpage>&#x2013;<lpage>3345</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M411222200</pub-id></citation></ref>
<ref id="B35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Davies</surname> <given-names>B. S. J.</given-names></name> <name><surname>Rine</surname> <given-names>J.</given-names></name></person-group> (<year>2006</year>). <article-title>A role for sterol levels in oxygen sensing in <italic>Saccharomyces cerevisiae</italic>.</article-title> <source><italic>Genetics</italic></source> <volume>174</volume> <fpage>191</fpage>&#x2013;<lpage>201</lpage>. <pub-id pub-id-type="doi">10.1534/genetics.106.059964</pub-id></citation></ref>
<ref id="B36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Denning</surname> <given-names>D. W.</given-names></name> <name><surname>Perlin</surname> <given-names>D. S.</given-names></name></person-group> (<year>2011</year>). <article-title>Azole resistance in <italic>Aspergillus</italic>: a growing public health menace.</article-title> <source><italic>Future Microbiol.</italic></source> <volume>6</volume> <fpage>1229</fpage>&#x2013;<lpage>1232</lpage>. <pub-id pub-id-type="doi">10.2217/fmb.11.118</pub-id></citation></ref>
<ref id="B37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Denning</surname> <given-names>D. W.</given-names></name> <name><surname>Venkateswarlu</surname> <given-names>K.</given-names></name> <name><surname>Oakley</surname> <given-names>K. L.</given-names></name> <name><surname>Anderson</surname> <given-names>M. J.</given-names></name> <name><surname>Manning</surname> <given-names>N. J.</given-names></name> <name><surname>Stevens</surname> <given-names>D. A.</given-names></name><etal/></person-group> (<year>1997</year>). <article-title>Itraconazole resistance in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>41</volume> <fpage>1364</fpage>&#x2013;<lpage>1368</lpage>.</citation></ref>
<ref id="B38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dhingra</surname> <given-names>S.</given-names></name> <name><surname>Kowlaski</surname> <given-names>C. H.</given-names></name> <name><surname>Thammahong</surname> <given-names>A.</given-names></name> <name><surname>Beattie</surname> <given-names>S. R.</given-names></name> <name><surname>Bultman</surname> <given-names>K. M.</given-names></name> <name><surname>Cramer</surname> <given-names>R. A.</given-names></name></person-group> (<year>2016</year>). <article-title>RbdB, a rhomboid protease critical for SREBP activation and virulence in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>mSphere</italic></source> <volume>1</volume> <fpage>e35</fpage>&#x2013;<lpage>e16</lpage>. <pub-id pub-id-type="doi">10.1128/mSphere.00035-16</pub-id></citation></ref>
<ref id="B39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Duncan</surname> <given-names>E. A.</given-names></name> <name><surname>Brown</surname> <given-names>M. S.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name> <name><surname>Sakai</surname> <given-names>J.</given-names></name></person-group> (<year>1997</year>). <article-title>Cleavage site for sterol-regulated protease localized to a Leu-Ser bond in the lumenal loop of sterol regulatory element-binding protein-2.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>272</volume> <fpage>12778</fpage>&#x2013;<lpage>12785</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.272.19.12778</pub-id></citation></ref>
<ref id="B40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Duncan</surname> <given-names>E. A.</given-names></name> <name><surname>Dav&#x00E9;</surname> <given-names>U. P.</given-names></name> <name><surname>Sakai</surname> <given-names>J.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name> <name><surname>Brown</surname> <given-names>M. S.</given-names></name></person-group> (<year>1998</year>). <article-title>Second-site cleavage in sterol regulatory element-binding protein occurs at transmembrane junction as determined by cysteine panning.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>273</volume> <fpage>17801</fpage>&#x2013;<lpage>17809</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.273.28.17801</pub-id></citation></ref>
<ref id="B41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2006</year>). <article-title>SREBPs: sterol-regulated transcription factors.</article-title> <source><italic>J. Cell Sci.</italic></source> <volume>119</volume> <fpage>973</fpage>&#x2013;<lpage>976</lpage>. <pub-id pub-id-type="doi">10.1242/jcs02866</pub-id></citation></ref>
<ref id="B42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Espenshade</surname> <given-names>P. J.</given-names></name> <name><surname>Hughes</surname> <given-names>A. L.</given-names></name></person-group> (<year>2007</year>). <article-title>Regulation of sterol synthesis in eukaryotes.</article-title> <source><italic>Annu. Rev. Genet.</italic></source> <volume>41</volume> <fpage>401</fpage>&#x2013;<lpage>427</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.genet.41.110306.130315</pub-id></citation></ref>
<ref id="B43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Feldman</surname> <given-names>D. E.</given-names></name> <name><surname>Chauhan</surname> <given-names>V.</given-names></name> <name><surname>Koong</surname> <given-names>A. C.</given-names></name></person-group> (<year>2005</year>). <article-title>The unfolded protein response: a novel component of the hypoxic stress response in tumors.</article-title> <source><italic>Mol. Cancer Res.</italic></source> <volume>3</volume> <fpage>597</fpage>&#x2013;<lpage>605</lpage>. <pub-id pub-id-type="doi">10.1158/1541-7786.MCR-05-0221</pub-id></citation></ref>
<ref id="B44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Feng</surname> <given-names>X. Z.</given-names></name> <name><surname>Krishnan</surname> <given-names>K.</given-names></name> <name><surname>Richie</surname> <given-names>D. L.</given-names></name> <name><surname>Aimanianda</surname> <given-names>V.</given-names></name> <name><surname>Hart</surname> <given-names>L.</given-names></name> <name><surname>Grah</surname> <given-names>N.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>HacA-independent functions of the ER stress sensor IreA synergize with the canonical UPR to influence virulence traits in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>7</volume>:<issue>e1002330</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1002330</pub-id></citation></ref>
<ref id="B45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fryberg</surname> <given-names>M.</given-names></name> <name><surname>Oehlschlager</surname> <given-names>A. C.</given-names></name> <name><surname>Unrau</surname> <given-names>A. M.</given-names></name></person-group> (<year>1973</year>). <article-title>Biosynthesis of ergosterol in yeast &#x2013; evidence for multiple pathways.</article-title> <source><italic>J. Am. Chem. Soc.</italic></source> <volume>95</volume> <fpage>5747</fpage>&#x2013;<lpage>5757</lpage>. <pub-id pub-id-type="doi">10.1021/ja00798a051</pub-id></citation></ref>
<ref id="B46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Galea</surname> <given-names>A. M.</given-names></name> <name><surname>Brown</surname> <given-names>A. J.</given-names></name></person-group> (<year>2009</year>). <article-title>Special relationship between sterols and oxygen: were sterols an adaptation to aerobic life?</article-title> <source><italic>Free Radic. Biol. Med.</italic></source> <volume>47</volume> <fpage>880</fpage>&#x2013;<lpage>889</lpage>. <pub-id pub-id-type="doi">10.1016/j.freeradbiomed.2009.06.027</pub-id></citation></ref>
<ref id="B47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gallis</surname> <given-names>H. A.</given-names></name> <name><surname>Drew</surname> <given-names>R. H.</given-names></name> <name><surname>Pickard</surname> <given-names>W. W.</given-names></name></person-group> (<year>1990</year>). <article-title>Amphotericin-B &#x2013; 30 years of clinical-experience.</article-title> <source><italic>Rev. Infect. Dis.</italic></source> <volume>12</volume> <fpage>308</fpage>&#x2013;<lpage>329</lpage>. <pub-id pub-id-type="doi">10.1093/clinids/12.2.308</pub-id></citation></ref>
<ref id="B48"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Garcia-Covarrubias</surname> <given-names>L.</given-names></name> <name><surname>Barratt</surname> <given-names>D. M.</given-names></name> <name><surname>Bartlett</surname> <given-names>R.</given-names></name> <name><surname>Metzinger</surname> <given-names>S.</given-names></name> <name><surname>Van Meter</surname> <given-names>K.</given-names></name></person-group> (<year>2002</year>). <article-title>Invasive aspergillosis treated with adjunctive hyperbaric oxygenation: a retrospective clinical series at a single institution.</article-title> <source><italic>South. Med. J.</italic></source> <volume>95</volume> <fpage>450</fpage>&#x2013;<lpage>456</lpage>. <pub-id pub-id-type="doi">10.1097/00007611-200204000-00015</pub-id></citation></ref>
<ref id="B49"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ghannoum</surname> <given-names>M. A.</given-names></name> <name><surname>Rice</surname> <given-names>L. B.</given-names></name></person-group> (<year>1999</year>). <article-title>Antifungal agents: mode of action, mechanisms of resistance, and correlation of these mechanisms with bacterial resistance.</article-title> <source><italic>Clin. Microbiol. Rev.</italic></source> <volume>12</volume> <fpage>501</fpage>&#x2013;<lpage>517</lpage>.</citation></ref>
<ref id="B50"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Grahl</surname> <given-names>N.</given-names></name> <name><surname>Puttikamonkul</surname> <given-names>S.</given-names></name> <name><surname>Macdonald</surname> <given-names>J. M.</given-names></name> <name><surname>Gamcsik</surname> <given-names>M. P.</given-names></name> <name><surname>Ngo</surname> <given-names>L. Y.</given-names></name> <name><surname>Hohl</surname> <given-names>T. M.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>In vivo hypoxia and a fungal alcohol dehydrogenase influence the pathogenesis of invasive pulmonary aspergillosis.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>7</volume>:<issue>e1002145</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1002145</pub-id></citation></ref>
<ref id="B51"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Grahl</surname> <given-names>N.</given-names></name> <name><surname>Shepardson</surname> <given-names>K. M.</given-names></name> <name><surname>Chung</surname> <given-names>D.</given-names></name> <name><surname>Cramer</surname> <given-names>R. A.</given-names></name></person-group> (<year>2012</year>). <article-title>Hypoxia and fungal pathogenesis: to air or not to air?</article-title> <source><italic>Eukaryotic Cell</italic></source> <volume>11</volume> <fpage>560</fpage>&#x2013;<lpage>570</lpage>. <pub-id pub-id-type="doi">10.1128/EC.00031-12</pub-id></citation></ref>
<ref id="B52"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gray</surname> <given-names>K. C.</given-names></name> <name><surname>Palacios</surname> <given-names>D. S.</given-names></name> <name><surname>Dailey</surname> <given-names>I.</given-names></name> <name><surname>Endo</surname> <given-names>M. M.</given-names></name> <name><surname>Uno</surname> <given-names>B. E.</given-names></name> <name><surname>Wilcock</surname> <given-names>B. C.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Amphotericin primarily kills yeast by simply binding ergosterol.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>109</volume> <fpage>2234</fpage>&#x2013;<lpage>2239</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.1117280109</pub-id></citation></ref>
<ref id="B53"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gsaller</surname> <given-names>F.</given-names></name> <name><surname>Hortschansky</surname> <given-names>P.</given-names></name> <name><surname>Furukawa</surname> <given-names>T.</given-names></name> <name><surname>Carr</surname> <given-names>P. D.</given-names></name> <name><surname>Rash</surname> <given-names>B.</given-names></name> <name><surname>Capilla</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Sterol biosynthesis and azole tolerance is governed by the opposing actions of SrbA and the CCAAT binding complex.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>12</volume>:<issue>e1005775</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1005775</pub-id></citation></ref>
<ref id="B54"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ha</surname> <given-names>Y.</given-names></name> <name><surname>Akiyama</surname> <given-names>Y.</given-names></name> <name><surname>Xue</surname> <given-names>Y.</given-names></name></person-group> (<year>2013</year>). <article-title>Structure and mechanism of rhomboid protease.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>288</volume> <fpage>15430</fpage>&#x2013;<lpage>15436</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.R112.422378</pub-id></citation></ref>
<ref id="B55"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Haas</surname> <given-names>H.</given-names></name></person-group> (<year>2012</year>). <article-title>Iron &#x2013; a key nexus in the virulence of <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Front. Microbiol.</italic></source> <volume>3</volume>:<issue>28</issue>. <pub-id pub-id-type="doi">10.3389/fmicb.2012.00028</pub-id></citation></ref>
<ref id="B56"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hampton</surname> <given-names>R. Y.</given-names></name> <name><surname>Gardner</surname> <given-names>R. G.</given-names></name> <name><surname>Rine</surname> <given-names>J.</given-names></name></person-group> (<year>1996</year>). <article-title>Role of 26S proteasome and HRD genes in the degradation of 3-hydroxy-3-methylglutaryl-CoA reductase, an integral endoplasmic reticulum membrane protein.</article-title> <source><italic>Mol. Biol. Cell</italic></source> <volume>7</volume> <fpage>2029</fpage>&#x2013;<lpage>2044</lpage>. <pub-id pub-id-type="doi">10.1091/mbc.7.12.2029</pub-id></citation></ref>
<ref id="B57"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Han</surname> <given-names>S.</given-names></name> <name><surname>Lone</surname> <given-names>M. A.</given-names></name> <name><surname>Schneiter</surname> <given-names>R.</given-names></name> <name><surname>Chang</surname> <given-names>A.</given-names></name></person-group> (<year>2010</year>). <article-title>Orm1 and Orm2 are conserved endoplasmic reticulum membrane proteins regulating lipid homeostasis and protein quality control.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>107</volume> <fpage>5851</fpage>&#x2013;<lpage>5856</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.0911617107</pub-id></citation></ref>
<ref id="B58"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hortschansky</surname> <given-names>P.</given-names></name> <name><surname>Ando</surname> <given-names>E.</given-names></name> <name><surname>Tuppatsch</surname> <given-names>K.</given-names></name> <name><surname>Arikawa</surname> <given-names>H.</given-names></name> <name><surname>Kobayashi</surname> <given-names>T.</given-names></name> <name><surname>Kato</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Deciphering the combinatorial DNA-binding code of the CCAAT-binding complex and the iron-regulatory basic region leucine zipper (bzip) transcription factor HapX.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>290</volume> <fpage>6058</fpage>&#x2013;<lpage>6070</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M114.628677</pub-id></citation></ref>
<ref id="B59"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hu</surname> <given-names>W. Q.</given-names></name> <name><surname>Sillaots</surname> <given-names>S.</given-names></name> <name><surname>Lemieux</surname> <given-names>S.</given-names></name> <name><surname>Davison</surname> <given-names>J.</given-names></name> <name><surname>Kauffman</surname> <given-names>S.</given-names></name> <name><surname>Breton</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Essential gene identification and drug target prioritization in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>3</volume>:<issue>e24</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.0030024</pub-id></citation></ref>
<ref id="B60"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hua</surname> <given-names>X. X.</given-names></name> <name><surname>Wu</surname> <given-names>J.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name> <name><surname>Brown</surname> <given-names>M. S.</given-names></name> <name><surname>Hobbs</surname> <given-names>H. H.</given-names></name></person-group> (<year>1995</year>). <article-title>Structure of the human gene encoding sterol regulatory element-binding protein-1 (SREBF1) and localization of SREBF1 and SREBF2 to chromosomes 17P11.2 <italic>AND</italic> 22Q13.</article-title> <source><italic>Genomics</italic></source> <volume>25</volume> <fpage>667</fpage>&#x2013;<lpage>673</lpage>. <pub-id pub-id-type="doi">10.1016/0888-7543(95)80009-B</pub-id></citation></ref>
<ref id="B61"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hughes</surname> <given-names>A. L.</given-names></name> <name><surname>Lee</surname> <given-names>C. Y.</given-names></name> <name><surname>Bien</surname> <given-names>C. M.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2007a</year>). <article-title>4-methyl sterols regulate fission yeast SREBP-Scap under low oxygen and cell stress.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>282</volume> <fpage>24388</fpage>&#x2013;<lpage>24396</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M701326200</pub-id></citation></ref>
<ref id="B62"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hughes</surname> <given-names>A. L.</given-names></name> <name><surname>Powell</surname> <given-names>D. W.</given-names></name> <name><surname>Bard</surname> <given-names>M.</given-names></name> <name><surname>Eckstein</surname> <given-names>J.</given-names></name> <name><surname>Barbuch</surname> <given-names>R.</given-names></name> <name><surname>Link</surname> <given-names>A. J.</given-names></name><etal/></person-group> (<year>2007b</year>). <article-title>Dap1/PGRMC1 binds and regulates cytochrome P450 enzymes.</article-title> <source><italic>Cell Metab.</italic></source> <volume>5</volume> <fpage>143</fpage>&#x2013;<lpage>149</lpage>. <pub-id pub-id-type="doi">10.1016/j.cmet.2006.12.009</pub-id></citation></ref>
<ref id="B63"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hughes</surname> <given-names>A. L.</given-names></name> <name><surname>Todd</surname> <given-names>B. L.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2005</year>). <article-title>SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast.</article-title> <source><italic>Cell</italic></source> <volume>120</volume> <fpage>831</fpage>&#x2013;<lpage>842</lpage>. <pub-id pub-id-type="doi">10.1016/j.cell.2005.01.012</pub-id></citation></ref>
<ref id="B64"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hughes</surname> <given-names>B. T.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2008</year>). <article-title>Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member.</article-title> <source><italic>Embo J.</italic></source> <volume>27</volume> <fpage>1491</fpage>&#x2013;<lpage>1501</lpage>. <pub-id pub-id-type="doi">10.1038/emboj.2008.83</pub-id></citation></ref>
<ref id="B65"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hunter</surname> <given-names>W. N.</given-names></name></person-group> (<year>2007</year>). <article-title>The non-mevalonate pathway of isoprenoid precursor biosynthesis.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>282</volume> <fpage>21573</fpage>&#x2013;<lpage>21577</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.R700005200</pub-id></citation></ref>
<ref id="B66"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>John</surname> <given-names>B. V.</given-names></name> <name><surname>Chamilos</surname> <given-names>G.</given-names></name> <name><surname>Kontoyiannis</surname> <given-names>D. P.</given-names></name></person-group> (<year>2005</year>). <article-title>Hyperbaric oxygen as an adjunctive treatment for zygomycosis.</article-title> <source><italic>Clin. Microbiol. Infect.</italic></source> <volume>11</volume> <fpage>515</fpage>&#x2013;<lpage>517</lpage>. <pub-id pub-id-type="doi">10.1111/j.1469-0691.2005.01170.x</pub-id></citation></ref>
<ref id="B67"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kaplan</surname> <given-names>C. D.</given-names></name> <name><surname>Kaplan</surname> <given-names>J.</given-names></name></person-group> (<year>2009</year>). <article-title>Iron acquisition and transcriptional regulation.</article-title> <source><italic>Chem. Rev.</italic></source> <volume>109</volume> <fpage>4536</fpage>&#x2013;<lpage>4552</lpage>. <pub-id pub-id-type="doi">10.1021/cr9001676</pub-id></citation></ref>
<ref id="B68"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kelly</surname> <given-names>S. L.</given-names></name> <name><surname>Lamb</surname> <given-names>D. C.</given-names></name> <name><surname>Kelly</surname> <given-names>D. E.</given-names></name> <name><surname>Manning</surname> <given-names>N. J.</given-names></name> <name><surname>Loeffler</surname> <given-names>J.</given-names></name> <name><surname>Hebart</surname> <given-names>H.</given-names></name></person-group> (<year>1997</year>). <article-title>Resistance to fluconazole and cross-resistance to amphotericin B in <italic>Candida albicans</italic> from AIDS patients caused by defective sterol Delta(5,6)-desaturation.</article-title> <source><italic>FEBS Lett.</italic></source> <volume>400</volume> <fpage>80</fpage>&#x2013;<lpage>82</lpage>. <pub-id pub-id-type="doi">10.1016/S0014-5793(96)01360-9</pub-id></citation></ref>
<ref id="B69"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kim</surname> <given-names>J.</given-names></name> <name><surname>Haa</surname> <given-names>H.-J.</given-names></name> <name><surname>Kima</surname> <given-names>S.</given-names></name> <name><surname>Choia</surname> <given-names>A.-R.</given-names></name> <name><surname>Leec</surname> <given-names>S.-J.</given-names></name> <name><surname>Hoec</surname> <given-names>K.-L.</given-names></name></person-group> (<year>2015</year>). <article-title>Identification of Rbd2 as a candidate protease for sterol regulatory element binding protein (SREBP) cleavage in fission yeast.</article-title> <source><italic>Biochem. Biophys. Res. Commun.</italic></source> <volume>468</volume> <fpage>606</fpage>&#x2013;<lpage>610</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbrc.2015.10.165</pub-id></citation></ref>
<ref id="B70"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kobayashi</surname> <given-names>D.</given-names></name> <name><surname>Kondo</surname> <given-names>K.</given-names></name> <name><surname>Uehara</surname> <given-names>N.</given-names></name> <name><surname>Otokozawa</surname> <given-names>S.</given-names></name> <name><surname>Tsuji</surname> <given-names>N.</given-names></name> <name><surname>Yagihashi</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2002</year>). <article-title>Endogenous reactive oxygen species is an important mediator of miconazole antifungal effect.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>46</volume> <fpage>3113</fpage>&#x2013;<lpage>3117</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.46.10.3113-3117.2002</pub-id></citation></ref>
<ref id="B71"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kolpen</surname> <given-names>M.</given-names></name> <name><surname>Mousavi</surname> <given-names>N.</given-names></name> <name><surname>Sams</surname> <given-names>T.</given-names></name> <name><surname>Bjarnsholt</surname> <given-names>T.</given-names></name> <name><surname>Ciofu</surname> <given-names>O.</given-names></name> <name><surname>Moser</surname> <given-names>C.</given-names></name></person-group> (<year>2016</year>). <article-title>Reinforcement of the bactericidal effect of ciprofloxacin on <italic>Pseudomonas aeruginosa</italic> biofilm by hyperbaric oxygen treatment.</article-title> <source><italic>Int. J. Antimicrob. Agents</italic></source> <volume>47</volume> <fpage>163</fpage>&#x2013;<lpage>167</lpage>. <pub-id pub-id-type="doi">10.1016/j.ijantimicag.2015.12.005</pub-id></citation></ref>
<ref id="B72"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Koumenis</surname> <given-names>C.</given-names></name> <name><surname>Wouters</surname> <given-names>B. G.</given-names></name></person-group> (<year>2006</year>). <article-title>&#x201C;Translating&#x201D; tumor hypoxia: unfolded protein response (UPR)-dependent and UPR-independent pathways.</article-title> <source><italic>Mol. Cancer Res.</italic></source> <volume>4</volume> <fpage>423</fpage>&#x2013;<lpage>436</lpage>. <pub-id pub-id-type="doi">10.1158/1541-7786.MCR-06-0150</pub-id></citation></ref>
<ref id="B73"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Krishnan</surname> <given-names>K.</given-names></name> <name><surname>Askew</surname> <given-names>D. S.</given-names></name></person-group> (<year>2014</year>). <article-title>The fungal UPR A regulatory hub for virulence traits in the mold pathogen <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Virulence</italic></source> <volume>5</volume> <fpage>334</fpage>&#x2013;<lpage>340</lpage>. <pub-id pub-id-type="doi">10.4161/viru.26571</pub-id></citation></ref>
<ref id="B74"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Krishnan</surname> <given-names>K.</given-names></name> <name><surname>Feng</surname> <given-names>X.</given-names></name> <name><surname>Powers-Fletcher</surname> <given-names>M. V.</given-names></name> <name><surname>Bick</surname> <given-names>G.</given-names></name> <name><surname>Richie</surname> <given-names>D. L.</given-names></name> <name><surname>Woollett</surname> <given-names>L. A.</given-names></name><etal/></person-group> (<year>2013</year>). <article-title>Effects of a defective endoplasmic reticulum-associated degradation pathway on the stress response, virulence, and antifungal drug susceptibility of the mold pathogen <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Eukaryot. Cell</italic></source> <volume>12</volume> <fpage>512</fpage>&#x2013;<lpage>519</lpage>. <pub-id pub-id-type="doi">10.1128/EC.00319-12</pub-id></citation></ref>
<ref id="B75"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kurt</surname> <given-names>T.</given-names></name> <name><surname>Vural</surname> <given-names>A.</given-names></name> <name><surname>Temiz</surname> <given-names>A.</given-names></name> <name><surname>Ozbudak</surname> <given-names>E.</given-names></name> <name><surname>Yener</surname> <given-names>A. U.</given-names></name> <name><surname>Sacar</surname> <given-names>S.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Adjunctive hyperbaric oxygen therapy or alone antibiotherapy? Methicillin resistant <italic>Staphylococcus aureus</italic> mediastinitis in a rat model.</article-title> <source><italic>Rev. Bras. Cir. Cardiovasc.</italic></source> <volume>30</volume> <fpage>538</fpage>&#x2013;<lpage>543</lpage>.</citation></ref>
<ref id="B76"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kwon-Chung</surname> <given-names>K. J.</given-names></name> <name><surname>Sugui</surname> <given-names>J. A.</given-names></name></person-group> (<year>2013</year>). <article-title><italic>Aspergillus fumigatus</italic>-What makes the species a ubiquitous human fungal pathogen?</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>9</volume>:<issue>e1003743</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1003743</pub-id></citation></ref>
<ref id="B77"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lajoie</surname> <given-names>P.</given-names></name> <name><surname>Moir</surname> <given-names>R. D.</given-names></name> <name><surname>Willis</surname> <given-names>I. M.</given-names></name> <name><surname>Snapp</surname> <given-names>E. L.</given-names></name></person-group> (<year>2012</year>). <article-title>Kar2p availability defines distinct forms of endoplasmic reticulum stress in living cells.</article-title> <source><italic>Mol. Biol. Cell</italic></source> <volume>23</volume> <fpage>955</fpage>&#x2013;<lpage>964</lpage>. <pub-id pub-id-type="doi">10.1091/mbc.E11-12-0995</pub-id></citation></ref>
<ref id="B78"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lambou</surname> <given-names>K.</given-names></name> <name><surname>Lamarre</surname> <given-names>C.</given-names></name> <name><surname>Beau</surname> <given-names>R.</given-names></name> <name><surname>Dufour</surname> <given-names>N.</given-names></name> <name><surname>Latge</surname> <given-names>J. P.</given-names></name></person-group> (<year>2010</year>). <article-title>Functional analysis of the superoxide dismutase family in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Mol. Microbiol.</italic></source> <volume>75</volume> <fpage>910</fpage>&#x2013;<lpage>923</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2958.2009.07024.x</pub-id></citation></ref>
<ref id="B79"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lamoth</surname> <given-names>F.</given-names></name> <name><surname>Juvvadi</surname> <given-names>P. R.</given-names></name> <name><surname>Soderblom</surname> <given-names>E. J.</given-names></name> <name><surname>Moseley</surname> <given-names>M. A.</given-names></name> <name><surname>Asfaw</surname> <given-names>Y. G.</given-names></name> <name><surname>Steinbach</surname> <given-names>W. J.</given-names></name></person-group> (<year>2014</year>). <article-title>Identification of a key lysine residue in heat shock protein 90 required for azole and echinocandin resistance in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>58</volume> <fpage>1889</fpage>&#x2013;<lpage>1896</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.02286-13</pub-id></citation></ref>
<ref id="B80"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lee</surname> <given-names>C. Y.</given-names></name> <name><surname>Stewart</surname> <given-names>E. V.</given-names></name> <name><surname>Hughes</surname> <given-names>B. T.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2009</year>). <article-title>Oxygen-dependent binding of Nro1 to the prolyl hydroxylase Ofd1 regulates SREBP degradation in yeast.</article-title> <source><italic>EMBO J.</italic></source> <volume>28</volume> <fpage>135</fpage>&#x2013;<lpage>143</lpage>. <pub-id pub-id-type="doi">10.1038/emboj.2008.271</pub-id></citation></ref>
<ref id="B81"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lohi</surname> <given-names>O.</given-names></name> <name><surname>Urban</surname> <given-names>S.</given-names></name> <name><surname>Freeman</surname> <given-names>M.</given-names></name></person-group> (<year>2004</year>). <article-title>Diverse substrate recognition mechanisms for rhomboids: thrombomodulin is cleaved by mammalian rhomboids.</article-title> <source><italic>Curr. Biol.</italic></source> <volume>14</volume> <fpage>236</fpage>&#x2013;<lpage>241</lpage>. <pub-id pub-id-type="doi">10.1016/j.cub.2004.01.025</pub-id></citation></ref>
<ref id="B82"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Losada</surname> <given-names>L.</given-names></name> <name><surname>Sugui</surname> <given-names>J. A.</given-names></name> <name><surname>Eckhaus</surname> <given-names>M. A.</given-names></name> <name><surname>Chang</surname> <given-names>Y. C.</given-names></name> <name><surname>Mounaud</surname> <given-names>S.</given-names></name> <name><surname>Figat</surname> <given-names>A.</given-names></name><etal/></person-group> (<year>2015</year>). <article-title>Genetic analysis using an isogenic mating pair of <italic>Aspergillus fumigatus</italic> identifies azole resistance genes and lack of MAT locus&#x2019;s role in virulence.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>11</volume>:<issue>e1004834</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1004834</pub-id></citation></ref>
<ref id="B83"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lu</surname> <given-names>X.</given-names></name> <name><surname>Li</surname> <given-names>Y.</given-names></name> <name><surname>Liu</surname> <given-names>J.</given-names></name> <name><surname>Cao</surname> <given-names>X.</given-names></name> <name><surname>Wang</surname> <given-names>X.</given-names></name> <name><surname>Wang</surname> <given-names>D.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>3 beta-hydroxysteroid-Delta 24 reductase is a hydrogen peroxide scavenger, protecting cells from oxidative stress-induced apoptosis.</article-title> <source><italic>Endocrinology</italic></source> <volume>149</volume> <fpage>3267</fpage>&#x2013;<lpage>3273</lpage>. <pub-id pub-id-type="doi">10.1210/en.2008-0024</pub-id></citation></ref>
<ref id="B84"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Martel</surname> <given-names>C. M.</given-names></name> <name><surname>Parker</surname> <given-names>J. E.</given-names></name> <name><surname>Bader</surname> <given-names>O.</given-names></name> <name><surname>Weig</surname> <given-names>M.</given-names></name> <name><surname>Gross</surname> <given-names>U.</given-names></name> <name><surname>Warrilow</surname> <given-names>A. G.</given-names></name></person-group> (<year>2010</year>). <article-title>Identification and characterization of four azole-resistant erg3 mutants of <italic>Candida albicans</italic>.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>54</volume> <fpage>4527</fpage>&#x2013;<lpage>4533</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.00348-10</pub-id></citation></ref>
<ref id="B85"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mast</surname> <given-names>N.</given-names></name> <name><surname>Charvet</surname> <given-names>C.</given-names></name> <name><surname>Pikuleva</surname> <given-names>I. A.</given-names></name> <name><surname>Stout</surname> <given-names>C. D.</given-names></name></person-group> (<year>2010</year>). <article-title>Structural basis of drug binding to CYP46A1, an enzyme that controls cholesterol turnover in the brain.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>285</volume> <fpage>31783</fpage>&#x2013;<lpage>31795</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M110.143313</pub-id></citation></ref>
<ref id="B86"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mayr</surname> <given-names>A.</given-names></name> <name><surname>Lass-Fl&#x00F6;rl</surname> <given-names>C.</given-names></name></person-group> (<year>2011</year>). <article-title>Epidemiology and antifungal resistance in invasive aspergillosis according to primary disease &#x2013; review of the literature.</article-title> <source><italic>Eur. J. Med. Res.</italic></source> <volume>16</volume> <fpage>153</fpage>&#x2013;<lpage>157</lpage>. <pub-id pub-id-type="doi">10.1186/2047-783X-16-4-153</pub-id></citation></ref>
<ref id="B87"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Meletiadis</surname> <given-names>J.</given-names></name> <name><surname>Antachopoulos</surname> <given-names>C.</given-names></name> <name><surname>Stergiopoulou</surname> <given-names>T.</given-names></name> <name><surname>Pournaras</surname> <given-names>S.</given-names></name> <name><surname>Roilides</surname> <given-names>S.</given-names></name> <name><surname>Walsh</surname> <given-names>T. J.</given-names></name></person-group> (<year>2007</year>). <article-title>Differential fungicidal activities of amphotericin B and voriconazole against <italic>Aspergillus</italic> species determined by microbroth methodology.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>51</volume> <fpage>3329</fpage>&#x2013;<lpage>3337</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.00345-07</pub-id></citation></ref>
<ref id="B88"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mellado</surname> <given-names>E.</given-names></name> <name><surname>Diaz-Guerra</surname> <given-names>T. M.</given-names></name> <name><surname>Cuenca-Estrella</surname> <given-names>M.</given-names></name> <name><surname>Rodriguez-Tudela</surname> <given-names>J. L.</given-names></name></person-group> (<year>2001</year>). <article-title>Identification of two different 14-alpha sterol demethylase-related genes (cyp51A and cyp51B) in <italic>Aspergillus fumigatus</italic> and other <italic>Aspergillus</italic> species.</article-title> <source><italic>J. Clin. Microbiol.</italic></source> <volume>39</volume> <fpage>2431</fpage>&#x2013;<lpage>2438</lpage>. <pub-id pub-id-type="doi">10.1128/JCM.39.7.2431-2438.2001</pub-id></citation></ref>
<ref id="B89"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mellado</surname> <given-names>E.</given-names></name> <name><surname>Garcia-Effron</surname> <given-names>G.</given-names></name> <name><surname>Buitrago</surname> <given-names>M. J.</given-names></name> <name><surname>Alcazar-Fuoli</surname> <given-names>L.</given-names></name> <name><surname>Cuenca-Estrella</surname> <given-names>M.</given-names></name> <name><surname>Rodriguez-Tudela</surname> <given-names>J. L.</given-names></name></person-group> (<year>2005</year>). <article-title>Targeted gene disruption of the 14-alpha sterol demethylase (cyp51A) in <italic>Aspergillus fumigatus</italic> and its role in azole drug susceptibility.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>49</volume> <fpage>2536</fpage>&#x2013;<lpage>2538</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.49.6.2536-2538.2005</pub-id></citation></ref>
<ref id="B90"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Miliutina</surname> <given-names>N.</given-names></name> <name><surname>Ananian</surname> <given-names>A. A.</given-names></name> <name><surname>Sapozhnikov</surname> <given-names>V. M.</given-names></name> <name><surname>Novikova</surname> <given-names>E. I.</given-names></name> <name><surname>Kostkin</surname> <given-names>V. B.</given-names></name> <name><surname>Dashevskii</surname> <given-names>B. S.</given-names></name></person-group> (<year>1992</year>). <article-title>Effects of prolonged hyperbarism on lipid peroxidation and structural-functional state of erythrocytes.</article-title> <source><italic>Biull. Eksp Biol. Med.</italic></source> <volume>113</volume> <fpage>474</fpage>&#x2013;<lpage>476</lpage>.</citation></ref>
<ref id="B91"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Moen</surname> <given-names>I.</given-names></name> <name><surname>Stuhr</surname> <given-names>L. E. B.</given-names></name></person-group> (<year>2012</year>). <article-title>Hyperbaric oxygen therapy and cancer-a review.</article-title> <source><italic>Target. Oncol.</italic></source> <volume>7</volume> <fpage>233</fpage>&#x2013;<lpage>242</lpage>. <pub-id pub-id-type="doi">10.1007/s11523-012-0233-x</pub-id></citation></ref>
<ref id="B92"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Moore</surname> <given-names>K. A.</given-names></name> <name><surname>Hollien</surname> <given-names>J.</given-names></name></person-group> (<year>2012</year>). <article-title>The unfolded protein response in secretory cell function.</article-title> <source><italic>Annu. Rev. Genet.</italic></source> <volume>46</volume> <fpage>165</fpage>&#x2013;<lpage>183</lpage>. <pub-id pub-id-type="doi">10.1146/annurev-genet-110711-155644</pub-id></citation></ref>
<ref id="B93"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nebert</surname> <given-names>D. W.</given-names></name> <name><surname>Russell</surname> <given-names>D. W.</given-names></name></person-group> (<year>2002</year>). <article-title>Clinical importance of the cytochromes P450.</article-title> <source><italic>Lancet</italic></source> <volume>360</volume> <fpage>1155</fpage>&#x2013;<lpage>1162</lpage>. <pub-id pub-id-type="doi">10.1016/S0140-6736(02)11203-7</pub-id></citation></ref>
<ref id="B94"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nes</surname> <given-names>W. D.</given-names></name> <name><surname>Janssen</surname> <given-names>G. G.</given-names></name> <name><surname>Crumley</surname> <given-names>F. G.</given-names></name> <name><surname>Kalinowska</surname> <given-names>M.</given-names></name> <name><surname>Akihisa</surname> <given-names>T.</given-names></name></person-group> (<year>1993</year>). <article-title>The structural requirements of sterols for membrane-function in <italic>Saccharomyces cerevisiae</italic>.</article-title> <source><italic>Arch. Biochem. Biophys.</italic></source> <volume>300</volume> <fpage>724</fpage>&#x2013;<lpage>733</lpage>. <pub-id pub-id-type="doi">10.1006/abbi.1993.1100</pub-id></citation></ref>
<ref id="B95"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nes</surname> <given-names>W. D.</given-names></name> <name><surname>Xu</surname> <given-names>S. H.</given-names></name> <name><surname>Haddon</surname> <given-names>W. F.</given-names></name></person-group> (<year>1989</year>). <article-title>Evidence for similarities and differences in the biosynthesis of fungal sterols.</article-title> <source><italic>Steroids</italic></source> <volume>53</volume> <fpage>533</fpage>&#x2013;<lpage>558</lpage>. <pub-id pub-id-type="doi">10.1016/0039-128X(89)90030-5</pub-id></citation></ref>
<ref id="B96"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nes</surname> <given-names>W. D.</given-names></name> <name><surname>Zhou</surname> <given-names>W.</given-names></name> <name><surname>Dennis</surname> <given-names>A. D.</given-names></name> <name><surname>Li</surname> <given-names>H.</given-names></name> <name><surname>Jia</surname> <given-names>Z.</given-names></name> <name><surname>Keith</surname> <given-names>R. A.</given-names></name><etal/></person-group> (<year>2002</year>). <article-title>Purification, characterization and catalytic properties of human sterol 8-isomerase.</article-title> <source><italic>Biochem. J.</italic></source> <volume>367</volume> <fpage>587</fpage>&#x2013;<lpage>599</lpage>. <pub-id pub-id-type="doi">10.1042/bj20020551</pub-id></citation></ref>
<ref id="B97"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Odds</surname> <given-names>F. C.</given-names></name> <name><surname>Brown</surname> <given-names>A. J.</given-names></name> <name><surname>Gow</surname> <given-names>N. A.</given-names></name></person-group> (<year>2003</year>). <article-title>Antifungal agents: mechanisms of action.</article-title> <source><italic>Trends Microbiol.</italic></source> <volume>11</volume> <fpage>272</fpage>&#x2013;<lpage>279</lpage>. <pub-id pub-id-type="doi">10.1016/S0966-842X(03)00117-3</pub-id></citation></ref>
<ref id="B98"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Odom</surname> <given-names>A. R.</given-names></name></person-group> (<year>2011</year>). <article-title>Five questions about non-mevalonate isoprenoid biosynthesis.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>7</volume>:<issue>e1002323</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1002323</pub-id></citation></ref>
<ref id="B99"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pandey</surname> <given-names>A. V.</given-names></name> <name><surname>Fl&#x00FC;ck</surname> <given-names>C. E.</given-names></name></person-group> (<year>2013</year>). <article-title>NADPH P450 oxidoreductase: structure, function, and pathology of diseases.</article-title> <source><italic>Pharmacol. Ther.</italic></source> <volume>138</volume> <fpage>229</fpage>&#x2013;<lpage>254</lpage>. <pub-id pub-id-type="doi">10.1016/j.pharmthera.2013.01.010</pub-id></citation></ref>
<ref id="B100"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Parker</surname> <given-names>J. E.</given-names></name> <name><surname>Warrilow</surname> <given-names>A. G.</given-names></name> <name><surname>Price</surname> <given-names>C. L.</given-names></name> <name><surname>Mullins</surname> <given-names>J. G.</given-names></name> <name><surname>Kelly</surname> <given-names>D. E.</given-names></name> <name><surname>Kelly</surname> <given-names>S. L.</given-names></name></person-group> (<year>2014</year>). <article-title>Resistance to antifungals that target CYP51.</article-title> <source><italic>J. Chem. Biol.</italic></source> <volume>7</volume> <fpage>143</fpage>&#x2013;<lpage>161</lpage>. <pub-id pub-id-type="doi">10.1007/s12154-014-0121-1</pub-id></citation></ref>
<ref id="B101"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Parks</surname> <given-names>L. W.</given-names></name> <name><surname>Casey</surname> <given-names>W. M.</given-names></name></person-group> (<year>1995</year>). <article-title>Physiological implications of sterol biosynthesis in yeast.</article-title> <source><italic>Annu. Rev. Microbiol.</italic></source> <volume>49</volume> <fpage>95</fpage>&#x2013;<lpage>116</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.micro.49.1.95</pub-id></citation></ref>
<ref id="B102"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Patterson</surname> <given-names>T. F.</given-names></name> <name><surname>Thompson</surname> <given-names>G. R.</given-names> <suffix>III</suffix></name> <name><surname>Denning</surname> <given-names>D. W.</given-names></name> <name><surname>Fishman</surname> <given-names>J. A.</given-names></name> <name><surname>Hadley</surname> <given-names>S.</given-names></name> <name><surname>Herbrecht</surname> <given-names>R.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Practice guidelines for the diagnosis and management of aspergillosis: 2016 update by the infectious diseases society of america.</article-title> <source><italic>Clin. Infect. Dis.</italic></source> <volume>63</volume> <fpage>e1</fpage>&#x2013;<lpage>e60</lpage>. <pub-id pub-id-type="doi">10.1093/cid/ciw326</pub-id></citation></ref>
<ref id="B103"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Peng</surname> <given-names>Y. B.</given-names></name> <name><surname>Dong</surname> <given-names>D.</given-names></name> <name><surname>Jiang</surname> <given-names>C.</given-names></name> <name><surname>Yu</surname> <given-names>B.</given-names></name> <name><surname>Wang</surname> <given-names>X.</given-names></name> <name><surname>Ji</surname> <given-names>Y.</given-names></name></person-group> (<year>2012</year>). <article-title>Relationship between respiration deficiency and azole resistance in clinical Candida glabrata.</article-title> <source><italic>FEMS Yeast Res.</italic></source> <volume>12</volume> <fpage>719</fpage>&#x2013;<lpage>727</lpage>. <pub-id pub-id-type="doi">10.1111/j.1567-1364.2012.00821.x</pub-id></citation></ref>
<ref id="B104"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pineau</surname> <given-names>L.</given-names></name> <name><surname>Colas</surname> <given-names>J.</given-names></name> <name><surname>Dupont</surname> <given-names>S.</given-names></name> <name><surname>Beney</surname> <given-names>L.</given-names></name> <name><surname>Fleurat-Lessard</surname> <given-names>P.</given-names></name> <name><surname>Berjeaud</surname> <given-names>J. M.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>Lipid-induced ER stress: synergistic effects of sterols and saturated fatty acids.</article-title> <source><italic>Traffic</italic></source> <volume>10</volume> <fpage>673</fpage>&#x2013;<lpage>690</lpage>. <pub-id pub-id-type="doi">10.1111/j.1600-0854.2009.00903.x</pub-id></citation></ref>
<ref id="B105"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Podust</surname> <given-names>L. M.</given-names></name> <name><surname>Poulos</surname> <given-names>T. L.</given-names></name> <name><surname>Waterman</surname> <given-names>M. R.</given-names></name></person-group> (<year>2001</year>). <article-title>Crystal structure of cytochrome P450 14 alpha-sterol demethylase (CYP51) from <italic>Mycobacterium tuberculosis</italic> in complex with azole inhibitors.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>98</volume> <fpage>3068</fpage>&#x2013;<lpage>3073</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.061562898</pub-id></citation></ref>
<ref id="B106"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Porter</surname> <given-names>J. R.</given-names></name> <name><surname>Burg</surname> <given-names>J. S.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name> <name><surname>Iglesias</surname> <given-names>P. A.</given-names></name></person-group> (<year>2010</year>). <article-title>Ergosterol regulates sterol regulatory element binding protein (SREBP) cleavage in fission yeast.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>285</volume> <fpage>41051</fpage>&#x2013;<lpage>41061</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M110.144337</pub-id></citation></ref>
<ref id="B107"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Punga</surname> <given-names>T.</given-names></name> <name><surname>Bengoechea-Alonso</surname> <given-names>M. T.</given-names></name> <name><surname>Ericsson</surname> <given-names>J.</given-names></name></person-group> (<year>2006</year>). <article-title>Phosphorylation and ubiquitination of the transcription factor sterol regulatory element-binding protein-1 in response to DNA binding.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>281</volume> <fpage>25278</fpage>&#x2013;<lpage>25286</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M604983200</pub-id></citation></ref>
<ref id="B108"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Qiao</surname> <given-names>J.</given-names></name> <name><surname>Kontoyiannis</surname> <given-names>D. P.</given-names></name> <name><surname>Wan</surname> <given-names>Z.</given-names></name> <name><surname>Li</surname> <given-names>R.</given-names></name> <name><surname>Liu</surname> <given-names>W.</given-names></name></person-group> (<year>2007</year>). <article-title>Antifungal activity of statins against <italic>Aspergillus</italic> species.</article-title> <source><italic>Med. Mycol.</italic></source> <volume>45</volume> <fpage>589</fpage>&#x2013;<lpage>593</lpage>. <pub-id pub-id-type="doi">10.1080/13693780701397673</pub-id></citation></ref>
<ref id="B109"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rawson</surname> <given-names>R. B.</given-names></name> <name><surname>DeBose-Boyd</surname> <given-names>R.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name> <name><surname>Brown</surname> <given-names>M. S.</given-names></name></person-group> (<year>1999</year>). <article-title>Failure to cleave sterol regulatory element-binding proteins (SREBPs) causes cholesterol auxotrophy in Chinese hamster ovary cells with genetic absence of SREBP cleavage-activating protein.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>274</volume> <fpage>28549</fpage>&#x2013;<lpage>28556</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.274.40.28549</pub-id></citation></ref>
<ref id="B110"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rawson</surname> <given-names>R. B.</given-names></name> <name><surname>Zelenski</surname> <given-names>N. G.</given-names></name> <name><surname>Nijhawan</surname> <given-names>D.</given-names></name> <name><surname>Ye</surname> <given-names>J.</given-names></name> <name><surname>Sakai</surname> <given-names>J.</given-names></name> <name><surname>Hasan</surname> <given-names>M. T.</given-names></name><etal/></person-group> (<year>1997</year>). <article-title>Complementation cloning of S2P, a gene encoding a putative metalloprotease required for intramembrane cleavage of SREBPs.</article-title> <source><italic>Mol. Cell.</italic></source> <volume>1</volume> <fpage>47</fpage>&#x2013;<lpage>57</lpage>. <pub-id pub-id-type="doi">10.1016/S1097-2765(00)80006-4</pub-id></citation></ref>
<ref id="B111"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Richie</surname> <given-names>D. L.</given-names></name> <name><surname>Hartl</surname> <given-names>L.</given-names></name> <name><surname>Aimanianda</surname> <given-names>V.</given-names></name> <name><surname>Winters</surname> <given-names>M. S.</given-names></name> <name><surname>Fuller</surname> <given-names>K. K.</given-names></name> <name><surname>Miley</surname> <given-names>M. D.</given-names></name><etal/></person-group> (<year>2009</year>). <article-title>A role for the Unfolded Protein Response (UPR) in virulence and antifungal susceptibility in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>5</volume>:<issue>e1000258</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1000258</pub-id></citation></ref>
<ref id="B112"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Romero-Ramirez</surname> <given-names>L.</given-names></name> <name><surname>Cao</surname> <given-names>H.</given-names></name> <name><surname>Nelson</surname> <given-names>D.</given-names></name> <name><surname>Hammond</surname> <given-names>E.</given-names></name> <name><surname>Lee</surname> <given-names>A. H.</given-names></name> <name><surname>Yoshida</surname> <given-names>H.</given-names></name><etal/></person-group> (<year>2004</year>). <article-title>XBP1 is essential for survival under hypoxic conditions and is required for tumor growth.</article-title> <source><italic>Cancer Res.</italic></source> <volume>64</volume> <fpage>5943</fpage>&#x2013;<lpage>5947</lpage>. <pub-id pub-id-type="doi">10.1158/0008-5472.CAN-04-1606</pub-id></citation></ref>
<ref id="B113"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rosenfeld</surname> <given-names>E.</given-names></name> <name><surname>Beauvoit</surname> <given-names>B.</given-names></name></person-group> (<year>2003</year>). <article-title>Role of the non-respiratory pathways in the utilization of molecular oxygen by <italic>Saccharomyces cerevisiae</italic>.</article-title> <source><italic>Yeast</italic></source> <volume>20</volume> <fpage>1115</fpage>&#x2013;<lpage>1144</lpage>. <pub-id pub-id-type="doi">10.1002/yea.1026</pub-id></citation></ref>
<ref id="B114"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sanati</surname> <given-names>H.</given-names></name> <name><surname>Belanger</surname> <given-names>P.</given-names></name> <name><surname>Fratti</surname> <given-names>R.</given-names></name> <name><surname>Ghannoum</surname> <given-names>M.</given-names></name></person-group> (<year>1997</year>). <article-title>A new triazole, voriconazole (UK-109,496), blocks sterol biosynthesis in <italic>Candida albicans</italic> and <italic>Candida krusei</italic>.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>41</volume> <fpage>2492</fpage>&#x2013;<lpage>2496</lpage>.</citation></ref>
<ref id="B115"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schenkman</surname> <given-names>J. B.</given-names></name> <name><surname>Jansson</surname> <given-names>I.</given-names></name></person-group> (<year>2003</year>). <article-title>The many roles of cytochrome b5.</article-title> <source><italic>Pharmacol. Ther.</italic></source> <volume>97</volume> <fpage>139</fpage>&#x2013;<lpage>152</lpage>. <pub-id pub-id-type="doi">10.1016/S0163-7258(02)00327-3</pub-id></citation></ref>
<ref id="B116"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schrettl</surname> <given-names>M.</given-names></name> <name><surname>Bignell</surname> <given-names>E.</given-names></name> <name><surname>Kragl</surname> <given-names>C.</given-names></name> <name><surname>Joechl</surname> <given-names>C.</given-names></name> <name><surname>Rogers</surname> <given-names>T.</given-names></name> <name><surname>Arst</surname> <given-names>H. N.</given-names> <suffix>Jr.</suffix></name><etal/></person-group> (<year>2004</year>). <article-title>Siderophore biosynthesis but not reductive iron assimilation is essential for <italic>Aspergillus fumigatus</italic> virulence.</article-title> <source><italic>J. Exp. Med.</italic></source> <volume>200</volume> <fpage>1213</fpage>&#x2013;<lpage>1219</lpage>. <pub-id pub-id-type="doi">10.1084/jem.20041242</pub-id></citation></ref>
<ref id="B117"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schrettl</surname> <given-names>M.</given-names></name> <name><surname>Bignell</surname> <given-names>E.</given-names></name> <name><surname>Kragl</surname> <given-names>C.</given-names></name> <name><surname>Sabiha</surname> <given-names>Y.</given-names></name> <name><surname>Loss</surname> <given-names>O.</given-names></name> <name><surname>Eisendle</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2007</year>). <article-title>Distinct roles for intra- and extracellular siderophores during <italic>Aspergillus fumigatus</italic> infection.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>3</volume>:<fpage>1195</fpage>&#x2013;<lpage>1207</lpage>. <pub-id pub-id-type="doi">10.1371/journal.ppat.0030128</pub-id></citation></ref>
<ref id="B118"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schrettl</surname> <given-names>M.</given-names></name> <name><surname>Kim</surname> <given-names>H. S.</given-names></name> <name><surname>Eisendle</surname> <given-names>M.</given-names></name> <name><surname>Kragl</surname> <given-names>C.</given-names></name> <name><surname>Nierman</surname> <given-names>W. C.</given-names></name> <name><surname>Heinekamp</surname> <given-names>T.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>SreA-mediated iron regulation in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Mol. Microbiol.</italic></source> <volume>70</volume> <fpage>27</fpage>&#x2013;<lpage>43</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2958.2008.06376.x</pub-id></citation></ref>
<ref id="B119"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Segal</surname> <given-names>E.</given-names></name> <name><surname>Menhusen</surname> <given-names>M. J.</given-names></name> <name><surname>Shawn</surname> <given-names>S.</given-names></name></person-group> (<year>2007</year>). <article-title>Hyperbaric oxygen in the treatment of invasive fungal infections: a single-center experience.</article-title> <source><italic>Israel Med. Assoc. J.</italic></source> <volume>9</volume> <fpage>355</fpage>&#x2013;<lpage>357</lpage>.</citation></ref>
<ref id="B120"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Shapiro</surname> <given-names>R. S.</given-names></name> <name><surname>Robbins</surname> <given-names>N.</given-names></name> <name><surname>Cowen</surname> <given-names>L. E.</given-names></name></person-group> (<year>2011</year>). <article-title>Regulatory circuitry governing fungal development, drug resistance, and disease.</article-title> <source><italic>Microbiol. Mol. Biol. Rev.</italic></source> <volume>75</volume> <fpage>213</fpage>&#x2013;<lpage>267</lpage>. <pub-id pub-id-type="doi">10.1128/MMBR.00045-10</pub-id></citation></ref>
<ref id="B121"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Snelders</surname> <given-names>E.</given-names></name> <name><surname>Huis In &#x2019;t Veld</surname> <given-names>R. A.</given-names></name> <name><surname>Rijs</surname> <given-names>A. J.</given-names></name> <name><surname>Kema</surname> <given-names>G. H.</given-names></name> <name><surname>Melchers</surname> <given-names>W. J.</given-names></name> <name><surname>Verweij</surname> <given-names>P. E.</given-names></name></person-group> (<year>2009</year>). <article-title>Possible environmental origin of resistance of <italic>Aspergillus fumigatus</italic> to medical triazoles.</article-title> <source><italic>Appl. Environ. Microbiol.</italic></source> <volume>75</volume> <fpage>4053</fpage>&#x2013;<lpage>4057</lpage>. <pub-id pub-id-type="doi">10.1128/AEM.00231-09</pub-id></citation></ref>
<ref id="B122"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Snelders</surname> <given-names>E.</given-names></name> <name><surname>Karawajczyk</surname> <given-names>A.</given-names></name> <name><surname>Verhoeven</surname> <given-names>R.</given-names></name> <name><surname>Venselaar</surname> <given-names>H.</given-names></name> <name><surname>Schaftenaar</surname> <given-names>G.</given-names></name> <name><surname>Verweij</surname> <given-names>P. E.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>The structure-function relationship of the <italic>Aspergillus fumigatus</italic> cyp51A L98H conversion by site-directed mutagenesis: the mechanism of L98H azole resistance.</article-title> <source><italic>Fungal Genet. Biol.</italic></source> <volume>48</volume> <fpage>1062</fpage>&#x2013;<lpage>1070</lpage>. <pub-id pub-id-type="doi">10.1016/j.fgb.2011.08.002</pub-id></citation></ref>
<ref id="B123"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Song</surname> <given-names>J. X.</given-names></name> <name><surname>Zhai</surname> <given-names>P.</given-names></name> <name><surname>Zhang</surname> <given-names>Y.</given-names></name> <name><surname>Zhang</surname> <given-names>C.</given-names></name> <name><surname>Sang</surname> <given-names>H.</given-names></name> <name><surname>Han</surname> <given-names>G.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>The <italic>Aspergillus fumigatus</italic> damage resistance protein family coordinately regulates ergosterol biosynthesis and azole susceptibility.</article-title> <source><italic>mBio</italic></source> <volume>7</volume> <issue>e01919</issue>&#x2013;<issue>15</issue>. <pub-id pub-id-type="doi">10.1128/mBio.01919-15</pub-id></citation></ref>
<ref id="B124"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Stewart</surname> <given-names>E. V.</given-names></name> <name><surname>Lloyd</surname> <given-names>S. J.</given-names></name> <name><surname>Burg</surname> <given-names>J. S.</given-names></name> <name><surname>Nwosu</surname> <given-names>C. C.</given-names></name> <name><surname>Lintner</surname> <given-names>R. E.</given-names></name> <name><surname>Daza</surname> <given-names>R.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the golgi DSC E3 ligase.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>287</volume> <fpage>672</fpage>&#x2013;<lpage>681</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M111.317370</pub-id></citation></ref>
<ref id="B125"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Stewart</surname> <given-names>E. V.</given-names></name> <name><surname>Nwosu</surname> <given-names>C. C.</given-names></name> <name><surname>Tong</surname> <given-names>Z.</given-names></name> <name><surname>Roguev</surname> <given-names>A.</given-names></name> <name><surname>Cummins</surname> <given-names>T. D.</given-names></name> <name><surname>Kim</surname> <given-names>D. U.</given-names></name><etal/></person-group> (<year>2011</year>). <article-title>Yeast SREBP cleavage activation requires the golgi Dsc E3 ligase complex.</article-title> <source><italic>Mol. Cell</italic></source> <volume>42</volume> <fpage>160</fpage>&#x2013;<lpage>171</lpage>. <pub-id pub-id-type="doi">10.1016/j.molcel.2011.02.035</pub-id></citation></ref>
<ref id="B126"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Stolz</surname> <given-names>A.</given-names></name> <name><surname>Hilt</surname> <given-names>W.</given-names></name> <name><surname>Buchberger</surname> <given-names>A.</given-names></name> <name><surname>Wolf</surname> <given-names>D. H.</given-names></name></person-group> (<year>2011</year>). <article-title>Cdc48: a power machine in protein degradation.</article-title> <source><italic>Trends Biochem. Sci.</italic></source> <volume>36</volume> <fpage>515</fpage>&#x2013;<lpage>523</lpage>. <pub-id pub-id-type="doi">10.1016/j.tibs.2011.06.001</pub-id></citation></ref>
<ref id="B127"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname> <given-names>L. F.</given-names></name> <name><surname>Li</surname> <given-names>X. C.</given-names></name> <name><surname>Shi</surname> <given-names>Y.</given-names></name></person-group> (<year>2016</year>). <article-title>Structural biology of intramembrane proteases: mechanistic insights from rhomboid and S2P to gamma-secretase.</article-title> <source><italic>Curr. Opin. Struct. Biol.</italic></source> <volume>37</volume> <fpage>97</fpage>&#x2013;<lpage>107</lpage>. <pub-id pub-id-type="doi">10.1016/j.sbi.2015.12.008</pub-id></citation></ref>
<ref id="B128"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname> <given-names>L. P.</given-names></name> <name><surname>Li</surname> <given-names>L.</given-names></name> <name><surname>Goldstein</surname> <given-names>J. L.</given-names></name> <name><surname>Brown</surname> <given-names>M. S.</given-names></name></person-group> (<year>2005</year>). <article-title>Insig required for sterol-mediated inhibition of Scap/SREBP binding to COPII proteins in vitro.</article-title> <source><italic>J. Biol. Chem.</italic></source> <volume>280</volume> <fpage>26483</fpage>&#x2013;<lpage>26490</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M504041200</pub-id></citation></ref>
<ref id="B129"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sundqvist</surname> <given-names>A.</given-names></name> <name><surname>Bengoechea-Alonso</surname> <given-names>M. T.</given-names></name> <name><surname>Ye</surname> <given-names>X.</given-names></name> <name><surname>Lukiyanchuk</surname> <given-names>V.</given-names></name> <name><surname>Jin</surname> <given-names>J.</given-names></name> <name><surname>Wade Harper</surname> <given-names>J.</given-names></name><etal/></person-group> (<year>2005</year>). <article-title>Control of lipid metabolism by phosphorylation-dependent degradation of the SREBP family of transcription factors by SCFFbw7.</article-title> <source><italic>Cell Metab.</italic></source> <volume>1</volume> <fpage>379</fpage>&#x2013;<lpage>391</lpage>. <pub-id pub-id-type="doi">10.1016/j.cmet.2005.04.010</pub-id></citation></ref>
<ref id="B130"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Thom</surname> <given-names>S. R.</given-names></name></person-group> (<year>2011</year>). <article-title>Hyperbaric oxygen: its mechanisms and efficacy.</article-title> <source><italic>Plast. Reconstr. Surg.</italic></source> <volume>127</volume> <fpage>131S</fpage>&#x2013;<lpage>141S</lpage>. <pub-id pub-id-type="doi">10.1097/PRS.0b013e3181fbe2bf</pub-id></citation></ref>
<ref id="B131"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tobert</surname> <given-names>J. A.</given-names></name></person-group> (<year>2003</year>). <article-title>Lovastatin and beyond: the history of the HMG-CoA reductase inhibitors.</article-title> <source><italic>Nat. Rev. Drug Discov.</italic></source> <volume>2</volume> <fpage>517</fpage>&#x2013;<lpage>526</lpage>. <pub-id pub-id-type="doi">10.1038/nrd1112</pub-id></citation></ref>
<ref id="B132"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Todd</surname> <given-names>B. L.</given-names></name> <name><surname>Stewart</surname> <given-names>E. V.</given-names></name> <name><surname>Burg</surname> <given-names>J. S.</given-names></name> <name><surname>Hughes</surname> <given-names>A. L.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name></person-group> (<year>2006</year>). <article-title>Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.</article-title> <source><italic>Mol. Cell. Biol.</italic></source> <volume>26</volume> <fpage>2817</fpage>&#x2013;<lpage>2831</lpage>. <pub-id pub-id-type="doi">10.1128/MCB.26.7.2817-2831.2006</pub-id></citation></ref>
<ref id="B133"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Travers</surname> <given-names>K. J.</given-names></name> <name><surname>Patil</surname> <given-names>C. K.</given-names></name> <name><surname>Wodicka</surname> <given-names>L.</given-names></name> <name><surname>Lockhart</surname> <given-names>D. J.</given-names></name> <name><surname>Weissman</surname> <given-names>J. S.</given-names></name> <name><surname>Walter</surname> <given-names>P.</given-names></name></person-group> (<year>2000</year>). <article-title>Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation.</article-title> <source><italic>Cell</italic></source> <volume>101</volume> <fpage>249</fpage>&#x2013;<lpage>258</lpage>. <pub-id pub-id-type="doi">10.1016/S0092-8674(00)80835-1</pub-id></citation></ref>
<ref id="B134"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tsai</surname> <given-names>Y. C.</given-names></name> <name><surname>Weissman</surname> <given-names>A. M.</given-names></name></person-group> (<year>2010</year>). <article-title>The unfolded protein response, degradation from the endoplasmic reticulum, and cancer.</article-title> <source><italic>Genes Cancer</italic></source> <volume>1</volume> <fpage>764</fpage>&#x2013;<lpage>778</lpage>. <pub-id pub-id-type="doi">10.1177/1947601910383011</pub-id></citation></ref>
<ref id="B135"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Vaknin</surname> <given-names>Y.</given-names></name> <name><surname>Hillmann</surname> <given-names>F.</given-names></name> <name><surname>Iannitti</surname> <given-names>R.</given-names></name> <name><surname>Ben Baruch</surname> <given-names>N.</given-names></name> <name><surname>Sandovsky-Losica</surname> <given-names>H.</given-names></name> <name><surname>Shadkchan</surname> <given-names>Y.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>Identification and characterization of a novel <italic>Aspergillus fumigatus</italic> rhomboid family putative protease, RbdA, involved in hypoxia sensing and virulence.</article-title> <source><italic>Infect. Immun.</italic></source> <volume>84</volume> <fpage>1866</fpage>&#x2013;<lpage>1878</lpage>. <pub-id pub-id-type="doi">10.1128/IAI.00011-16</pub-id></citation></ref>
<ref id="B136"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Verweij</surname> <given-names>P. E.</given-names></name> <name><surname>Chowdhary</surname> <given-names>A.</given-names></name> <name><surname>Melchers</surname> <given-names>W. J.</given-names></name> <name><surname>Meis</surname> <given-names>J. F.</given-names></name></person-group> (<year>2016</year>). <article-title>Azole resistance in <italic>Aspergillus fumigatus</italic>: can we retain the clinical use of mold-active antifungal azoles?</article-title> <source><italic>Clin. Infect. Dis.</italic></source> <volume>62</volume> <fpage>362</fpage>&#x2013;<lpage>368</lpage>. <pub-id pub-id-type="doi">10.1093/cid/civ885</pub-id></citation></ref>
<ref id="B137"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Volmer</surname> <given-names>R.</given-names></name> <name><surname>Ron</surname> <given-names>D.</given-names></name></person-group> (<year>2015</year>). <article-title>Lipid-dependent regulation of the unfolded protein response.</article-title> <source><italic>Curr. Opin. Cell Biol.</italic></source> <volume>33</volume> <fpage>67</fpage>&#x2013;<lpage>73</lpage>. <pub-id pub-id-type="doi">10.1016/j.ceb.2014.12.002</pub-id></citation></ref>
<ref id="B138"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>M.</given-names></name> <name><surname>Kaufman</surname> <given-names>R. J.</given-names></name></person-group> (<year>2014</year>). <article-title>The impact of the endoplasmic reticulum protein-folding environment on cancer development.</article-title> <source><italic>Nat. Rev. Cancer</italic></source> <volume>14</volume> <fpage>581</fpage>&#x2013;<lpage>597</lpage>. <pub-id pub-id-type="doi">10.1038/nrc3800</pub-id></citation></ref>
<ref id="B139"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Warrilow</surname> <given-names>A. G.</given-names></name> <name><surname>Parker</surname> <given-names>J. E.</given-names></name> <name><surname>Kelly</surname> <given-names>D. E.</given-names></name> <name><surname>Kelly</surname> <given-names>S. L.</given-names></name></person-group> (<year>2013</year>). <article-title>Azole affinity of sterol 14 alpha-demethylase (CYP51) enzymes from <italic>Candida albicans</italic> and <italic>Homo sapiens</italic>.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>57</volume> <fpage>1352</fpage>&#x2013;<lpage>1360</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.02067-12</pub-id></citation></ref>
<ref id="B140"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Warrilow</surname> <given-names>A. G. S.</given-names></name> <name><surname>Melo</surname> <given-names>N.</given-names></name> <name><surname>Martel</surname> <given-names>C. M.</given-names></name> <name><surname>Parker</surname> <given-names>J. E.</given-names></name> <name><surname>Nes</surname> <given-names>W. D.</given-names></name> <name><surname>Kelly</surname> <given-names>S. L.</given-names></name><etal/></person-group> (<year>2010</year>). <article-title>Expression, purification, and characterization of <italic>Aspergillus fumigatus</italic> sterol 14-alpha demethylase (CYP51) Isoenzymes A and B.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>54</volume> <fpage>4225</fpage>&#x2013;<lpage>4234</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.00316-10</pub-id></citation></ref>
<ref id="B141"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wiederhold</surname> <given-names>N. P.</given-names></name> <name><surname>Gil</surname> <given-names>V. G.</given-names></name> <name><surname>Gutierrez</surname> <given-names>F.</given-names></name> <name><surname>Lindner</surname> <given-names>J. R.</given-names></name> <name><surname>Albataineh</surname> <given-names>M. T.</given-names></name> <name><surname>McCarthy</surname> <given-names>D. I.</given-names></name><etal/></person-group> (<year>2016</year>). <article-title>First detection of TR34 L98H and TR46 Y121F T289A Cyp51 mutations in <italic>Aspergillus fumigatus</italic> isolates in the United States.</article-title> <source><italic>J. Clin. Microbiol.</italic></source> <volume>54</volume> <fpage>168</fpage>&#x2013;<lpage>171</lpage>. <pub-id pub-id-type="doi">10.1128/JCM.02478-15</pub-id></citation></ref>
<ref id="B142"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Willger</surname> <given-names>S. D.</given-names></name> <name><surname>Cornish</surname> <given-names>E. J.</given-names></name> <name><surname>Chung</surname> <given-names>D.</given-names></name> <name><surname>Fleming</surname> <given-names>B. A.</given-names></name> <name><surname>Lehmann</surname> <given-names>M. M.</given-names></name> <name><surname>Puttikamonkul</surname> <given-names>S.</given-names></name></person-group> (<year>2012</year>). <article-title>Dsc orthologs are required for hypoxia adaptation, triazole drug responses, and fungal virulence in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Eukaryot. Cell</italic></source> <volume>11</volume> <fpage>1557</fpage>&#x2013;<lpage>1567</lpage>. <pub-id pub-id-type="doi">10.1128/EC.00252-12</pub-id></citation></ref>
<ref id="B143"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Willger</surname> <given-names>S. D.</given-names></name> <name><surname>Puttikamonkul</surname> <given-names>S.</given-names></name> <name><surname>Kim</surname> <given-names>K. H.</given-names></name> <name><surname>Burritt</surname> <given-names>J. B.</given-names></name> <name><surname>Grahl</surname> <given-names>N.</given-names></name> <name><surname>Metzler</surname> <given-names>L. J.</given-names></name><etal/></person-group> (<year>2008</year>). <article-title>A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>PLoS Pathog.</italic></source> <volume>4</volume>:<issue>e1000200</issue>. <pub-id pub-id-type="doi">10.1371/journal.ppat.1000200</pub-id></citation></ref>
<ref id="B144"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xiong</surname> <given-names>Q. B.</given-names></name> <name><surname>Hassan</surname> <given-names>S. A.</given-names></name> <name><surname>Wilson</surname> <given-names>W. K.</given-names></name> <name><surname>Han</surname> <given-names>X. Y.</given-names></name> <name><surname>May</surname> <given-names>G. S.</given-names></name> <name><surname>Tarrand</surname> <given-names>J. J.</given-names></name><etal/></person-group> (<year>2005</year>). <article-title>Cholesterol import by <italic>Aspergillus fumigatus</italic> and its influence on antifungal potency of sterol biosynthesis inhibitors.</article-title> <source><italic>Antimicrob. Agents Chemother.</italic></source> <volume>49</volume> <fpage>518</fpage>&#x2013;<lpage>524</lpage>. <pub-id pub-id-type="doi">10.1128/AAC.49.2.518-524.2005</pub-id></citation></ref>
<ref id="B145"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yang</surname> <given-names>T.</given-names></name> <name><surname>Espenshade</surname> <given-names>P. J.</given-names></name> <name><surname>Wright</surname> <given-names>M. E.</given-names></name> <name><surname>Yabe</surname> <given-names>D.</given-names></name> <name><surname>Gong</surname> <given-names>Y.</given-names></name> <name><surname>Aebersold</surname> <given-names>R.</given-names></name><etal/></person-group> (<year>2002</year>). <article-title>Crucial step in cholesterol homeostasis: sterols promote binding of SCAP to INSIG-1, a membrane protein that facilitates retention of SREBPs in ER.</article-title> <source><italic>Cell</italic></source> <volume>110</volume> <fpage>489</fpage>&#x2013;<lpage>500</lpage>. <pub-id pub-id-type="doi">10.1016/S0092-8674(02)00872-3</pub-id></citation></ref>
<ref id="B146"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yasmin</surname> <given-names>S.</given-names></name> <name><surname>Alcazar-Fuoli</surname> <given-names>L.</given-names></name> <name><surname>Gr&#x00FC;ndlinger</surname> <given-names>M.</given-names></name> <name><surname>Puempel</surname> <given-names>T.</given-names></name> <name><surname>Cairns</surname> <given-names>T.</given-names></name> <name><surname>Blatzer</surname> <given-names>M.</given-names></name><etal/></person-group> (<year>2012</year>). <article-title>Mevalonate governs interdependency of ergosterol and siderophore biosyntheses in the fungal pathogen <italic>Aspergillus fumigatus</italic>.</article-title> <source><italic>Proc. Natl. Acad. Sci. U.S.A.</italic></source> <volume>109</volume> <fpage>E497</fpage>&#x2013;<lpage>E504</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.1106399108</pub-id></citation></ref>
<ref id="B147"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Yokoyama</surname> <given-names>C.</given-names></name> <name><surname>Wang</surname> <given-names>X.</given-names></name> <name><surname>Briggs</surname> <given-names>M. R.</given-names></name> <name><surname>Admon</surname> <given-names>A.</given-names></name> <name><surname>Wu</surname> <given-names>J.</given-names></name> <name><surname>Hua</surname> <given-names>X.</given-names></name><etal/></person-group> (<year>1993</year>). <article-title>SREBP-1, a basic-helix-loop-helix-leucine zipper protein that controls transcription of the low-density-lipoprotein receptor gene.</article-title> <source><italic>Cell</italic></source> <volume>75</volume> <fpage>187</fpage>&#x2013;<lpage>197</lpage>. <pub-id pub-id-type="doi">10.1016/S0092-8674(05)80095-9</pub-id></citation></ref>
</ref-list>
</back>
</article>