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<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2017.00059</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title><italic>In vivo</italic> Microscale Measurements of Light and Photosynthesis during Coral Bleaching: Evidence for the Optical Feedback Loop?</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Wangpraseurt</surname> <given-names>Daniel</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/61407/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Holm</surname> <given-names>Jacob B.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Larkum</surname> <given-names>Anthony W. D.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Pernice</surname> <given-names>Mathieu</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/134449/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ralph</surname> <given-names>Peter J.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/65640/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Suggett</surname> <given-names>David J.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/189010/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>K&#x00FC;hl</surname> <given-names>Michael</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/38112/overview"/>
</contrib>
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<aff id="aff1"><sup>1</sup><institution>Marine Biological Section, Department of Biology, University of Copenhagen</institution> <country>Helsing&#x00F8;r, Denmark</country></aff>
<aff id="aff2"><sup>2</sup><institution>Climate Change Cluster, Department of Environmental Sciences, University of Sydney, Sydney</institution> <country>NSW, Australia</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: <italic>Virginia Weis, Oregon State University, USA</italic></p></fn>
<fn fn-type="edited-by"><p>Reviewed by: <italic>Melissa Susan Roth, University of California, Berkeley, USA; Elisha M. Wood-Charlson, University of Hawaii at Manoa, USA</italic></p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x002A;Correspondence: <italic>Daniel Wangpraseurt, <email>wangpraseurt@gmail.com</email> Michael K&#x00FC;hl, <email>mkuhl@bio.ku.dk</email></italic></p></fn>
<fn fn-type="other" id="fn002"><p><sup>&#x2020;</sup>Present address: <italic>Daniel Wangpraseurt Department of Chemistry, University of Cambridge, Cambridge, UK</italic></p></fn>
<fn fn-type="other" id="fn003"><p>This article was submitted to Microbial Symbioses, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>01</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>8</volume>
<elocation-id>59</elocation-id>
<history>
<date date-type="received">
<day>14</day>
<month>10</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>01</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2017 Wangpraseurt, Holm, Larkum, Pernice, Ralph, Suggett and K&#x00FC;hl.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Wangpraseurt, Holm, Larkum, Pernice, Ralph, Suggett and K&#x00FC;hl</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Climate change-related coral bleaching, i.e., the visible loss of zooxanthellae from the coral host, is increasing in frequency and extent and presents a major threat to coral reefs globally. Coral bleaching has been proposed to involve accelerating light stress of their microalgal endosymbionts via a positive feedback loop of photodamage, symbiont expulsion and excess <italic>in vivo</italic> light exposure. To test this hypothesis, we used light and O<sub>2</sub> microsensors to characterize <italic>in vivo</italic> light exposure and photosynthesis of <italic>Symbiodinium</italic> during a thermal stress experiment. We created tissue areas with different densities of <italic>Symbiodinium</italic> cells in order to understand the optical properties and light microenvironment of corals during bleaching. Our results showed that in bleached <italic>Pocillopora damicornis</italic> corals, <italic>Symbiodinium</italic> light exposure was up to fivefold enhanced relative to healthy corals, and the relationship between symbiont loss and light enhancement was well-described by a power-law function. Cell-specific rates of <italic>Symbiodinium</italic> gross photosynthesis and light respiration were enhanced in bleached <italic>P. damicornis</italic> compared to healthy corals, while areal rates of net photosynthesis decreased. <italic>Symbiodinium</italic> light exposure in <italic>Favites</italic> sp. revealed the presence of low light microniches in bleached coral tissues, suggesting that light scattering in thick coral tissues can enable photoprotection of cryptic symbionts. Our study provides evidence for the acceleration of <italic>in vivo</italic> light exposure during coral bleaching but this optical feedback mechanism differs between coral hosts. Enhanced photosynthesis in relation to accelerating light exposure shows that coral microscale optics exerts a key role on coral photophysiology and the subsequent degree of radiative stress during coral bleaching.</p>
</abstract>
<kwd-group>
<kwd>coral bleaching</kwd>
<kwd><italic>Symbiodinium</italic></kwd>
<kwd>photosynthesis</kwd>
<kwd>light scattering</kwd>
<kwd>coral optics</kwd>
<kwd>ecophysiology</kwd>
</kwd-group>
<contract-sponsor id="cn001">Carlsbergfondet<named-content content-type="fundref-id">10.13039/501100002808</named-content></contract-sponsor>
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<fig-count count="6"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="68"/>
<page-count count="12"/>
<word-count count="0"/>
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</front>
<body>
<sec><title>Introduction</title>
<p>Solar radiation governs coral photophysiology and ultimately drives the productivity and growth of coral reefs (<xref ref-type="bibr" rid="B10">Falkowski et al., 1990</xref>). Light stimulates photosynthesis of coral microalgal endosymbionts (<italic>Symbiodinium</italic> spp.), generating O<sub>2</sub> and carbohydrates that are exported to the host fueling coral animal metabolism (<xref ref-type="bibr" rid="B35">Muscatine et al., 1981</xref>). However, excess light enhances <italic>Symbiodinium</italic> photodamage (<xref ref-type="bibr" rid="B66">Warner et al., 1999</xref>; <xref ref-type="bibr" rid="B55">Takahashi et al., 2004</xref>) and, in combination with anomalous seawater temperatures, can induce the breakdown of the coral-algal symbiosis known as coral bleaching (<xref ref-type="bibr" rid="B6">Brown, 1997</xref>; <xref ref-type="bibr" rid="B14">Hoegh-Guldberg, 1999</xref>). Coral bleaching events are regarded as a major threat to the future of coral reefs (<xref ref-type="bibr" rid="B2">Ainsworth et al., 2016</xref>) and hence the physiological mechanisms triggering coral bleaching have been a major research focus for decades (<xref ref-type="bibr" rid="B67">Weis, 2008</xref>). Coral bleaching susceptibility is affected by a combination of factors that act on different spatial and temporal scales, including coral thermal history (<xref ref-type="bibr" rid="B5">Brown et al., 2002</xref>; <xref ref-type="bibr" rid="B17">Hughes et al., 2003</xref>), <italic>Symbiodinium</italic> genotype (<xref ref-type="bibr" rid="B45">Sampayo et al., 2008</xref>), as well as biochemical pathways and tissue properties of the coral host species (<xref ref-type="bibr" rid="B3">Baird et al., 2009</xref>). At the cellular scale, coral bleaching involves enhanced thermal and radiative exposure of <italic>Symbiodinium</italic> cells, resulting in photodamage and the subsequent generation of reactive oxygen species (ROS) that induce the breakdown of the symbiosis (<xref ref-type="bibr" rid="B28">Lesser, 1996</xref>; <xref ref-type="bibr" rid="B14">Hoegh-Guldberg, 1999</xref>; <xref ref-type="bibr" rid="B67">Weis, 2008</xref>). The <italic>in vivo</italic> light and temperature exposure of <italic>Symbiodinium</italic> within the host tissue ultimately controls whether <italic>Symbiodinium</italic> undergoes photodamage, and it is thus important to resolve the optical and thermal microenvironment of coral hosts (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>; <xref ref-type="bibr" rid="B19">Jimenez et al., 2008</xref>; <xref ref-type="bibr" rid="B61">Wangpraseurt et al., 2012</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>).</p>
<p>Application of light microsensors has shown that the <italic>in vivo</italic> light exposure within coral tissues can be enhanced over the incident downwelling irradiance (<xref ref-type="bibr" rid="B26">K&#x00FC;hl et al., 1995</xref>; <xref ref-type="bibr" rid="B61">Wangpraseurt et al., 2012</xref>, <xref ref-type="bibr" rid="B60">2014a</xref>,<xref ref-type="bibr" rid="B62">b</xref>; <xref ref-type="bibr" rid="B4">Brodersen et al., 2014</xref>). Such irradiance enhancement is modulated by the unique optical properties of coral tissue and skeleton (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>; <xref ref-type="bibr" rid="B56">Teran et al., 2010</xref>; <xref ref-type="bibr" rid="B21">Kahng et al., 2012</xref>; <xref ref-type="bibr" rid="B33">Marcelino et al., 2013</xref>; <xref ref-type="bibr" rid="B59">Wangpraseurt et al., 2016a</xref>) and can improve photosynthesis under low light conditions (<xref ref-type="bibr" rid="B4">Brodersen et al., 2014</xref>; <xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>) or lead to light stress under high irradiance (<xref ref-type="bibr" rid="B33">Marcelino et al., 2013</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>). The loss of <italic>Symbiodinium</italic> spp. cells from corals under environmental stress has been hypothesized to further increase irradiance exposure <italic>in hospite</italic> due to decreased shading by photopigments and increased backscattered light from the coral skeleton (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>; <xref ref-type="bibr" rid="B56">Teran et al., 2010</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>). According to this so-called optical feedback hypothesis (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>), skeleton backscattering can further stimulate symbiont loss inducing an accelerating cycle, where symbiont loss promotes light enhancement and vice versa. Several studies have speculated on the relevance of such a feedback loop exacerbating coral bleaching, arguing that the light microenvironment during a stress event could serve as a key factor in determining the severity of a bleaching event (<xref ref-type="bibr" rid="B14">Hoegh-Guldberg, 1999</xref>; <xref ref-type="bibr" rid="B11">Franklin et al., 2006</xref>; <xref ref-type="bibr" rid="B16">Hoogenboom et al., 2006</xref>; <xref ref-type="bibr" rid="B1">Abrego et al., 2008</xref>; <xref ref-type="bibr" rid="B67">Weis, 2008</xref>; <xref ref-type="bibr" rid="B3">Baird et al., 2009</xref>). However, experimental proof of such a mechanism has been lacking.</p>
<p>Here, we provide the first direct measurements of the <italic>in vivo</italic> light environment of <italic>Symbiodinium</italic> during coral bleaching. We performed a thermal stress experiment and monitored changes in the <italic>in vivo</italic> light environment using light microsensors in two coral species with contrasting optical properties in concert with O<sub>2</sub> microsensor-based measurements of gross photosynthesis, net photosynthesis and light respiration. We provide evidence for the acceleration of <italic>in vivo</italic> light exposure upon coral bleaching and show that such light enhancement differs between coral hosts. This highlights the importance of skeleton and tissue optics for coral photophysiology and stress responses.</p>
</sec>
<sec id="s1" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec><title>Coral Species</title>
<p>Light microenvironments were investigated in two shallow-water corals: the branching coral <italic>Pocillopora damicornis</italic>, and the massive coral <italic>Favites</italic> sp. The coral <italic>P. damicornis</italic> is generally a bleaching-susceptible species (<xref ref-type="bibr" rid="B31">Loya et al., 2001</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>) with thin tissues (maximum thickness &#x223C;150 and 300 &#x03BC;m for coenosarc and polyp tissues, respectively) and low tissue light attenuation (<xref ref-type="bibr" rid="B53">Szab&#x00F3; et al., 2014</xref>). <italic>P. damicornis</italic> from Heron Island is known to harbor different <italic>Symbiodinium</italic> spp. including symbiont type C42ab and C33a (<xref ref-type="bibr" rid="B57">Tonk et al., 2013</xref>). <italic>Favites</italic> sp. is a more bleaching-resistant species (<xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>) with a polyp tissue thickness of &#x223C;2 mm (<xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>) and is known to associate with symbionts of type C1, C21, and C33 (<xref ref-type="bibr" rid="B57">Tonk et al., 2013</xref>). Corals were collected at low tide from shallow waters (&#x003C;2 m depth) on the reef flat off Heron Island, Great Barrier Reef, Australia (152&#x00B0;06&#x2032; E, 20&#x00B0;29&#x2032; S) in August&#x2013;September 2014. On a cloudless day during mid-day sun, the incident downwelling photon irradiance integrated over 400&#x2013;700 nm, i.e., PAR, reached <italic>in situ</italic> values at the level of the sampled colonies of E<sub>d</sub>(PAR) > 2000 &#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup> (<xref ref-type="bibr" rid="B62">Wangpraseurt et al., 2014b</xref>). Corals were selected from the same small sample area in order to ensure that they were adapted to a comparable light and flow regime. Coral fragments from at least 10 different daughter colonies of <italic>P. damicornis</italic> and <italic>Favites</italic> sp. were collected and sub-fragmented (<italic>P. damicornis</italic> ca. 3&#x2013;10 cm in length and <italic>Favites</italic> ca. 3 cm in diameter).</p>
</sec>
<sec><title>Bleaching Experiment</title>
<p>Collected corals were allowed to recover from potential translocation stress for a minimum of 1 week in a shaded outdoor aquarium at Heron Island Research Station before transfer to the experimental incubation set-up consisting of an outdoor aquarium tank (300 L) that was exposed to natural sunlight (13 h of daylight) and continuously supplied with seawater from the reef flat at an exchange rate of about 0.2 L s<sup>-1</sup>. The set-up mimicked conditions on the Heron Island reef flat for a water depth of 20&#x2013;30 cm with high solar irradiance exposure. A water heater connected to a thermistor (accuracy: &#x00B1;1.5&#x00B0;C, Sensor type: KTY81-121, Sentien Electronics, Australia) was placed in one corner of the tank and two submersible water pumps directed the water flow (3&#x2013;5 cm s<sup>-1</sup>) toward the heater, while four additional water pumps recirculated the water in the tank at a comparable flow speed in order to avoid the build-up of temperature gradients within the tank. E<sub>d</sub>(PAR) during noon was &#x223C;2000 &#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup> as measured at the water surface with a planar quantum irradiance sensor connected to a light meter (LI-190 and LI-1400, Li-Cor, Lincoln, NE, USA). Temperature was monitored using data loggers (Onset, USA) randomly distributed within the tank and logging at a time interval of 1 min. Coral fragments were randomly distributed within the tank. In order to induce coral bleaching, we followed the protocol of <xref ref-type="bibr" rid="B34">Middlebrook et al. (2010)</xref>, whereby the water temperature was step-wise increased by about 1&#x00B0;C per day. In total the experiment ran for 13 days during September 2014, and included 3 days of baseline measurements at ambient water temperature (22&#x00B0;C) followed by 10 days ramping of temperature from 22 to 33&#x00B0;C.</p>
<p>Often experimental measurements on coral bleaching use a balanced experimental design where temperature treated corals are assessed on par with healthy corals during the course of the experiment. In the microenvironmental approach used here, the total number of samples was limited by the experimental challenges involving intra-tissue microsensor measurements with a high chance of sensor breakage. As our main aim was to assess the optical mechanisms underlying coral bleaching, we prioritized measuring coral tissues with reduced algal cell densities over a larger number of control measurements on healthy corals. It is important to note that our experimental design does thus not allow for excluding potential experimental treatment effects (e.g., coral disease) on the physiology of the algae. However, all corals were visually expected for tissue necrosis and sloughing, and corals appeared visually free of disease. During the temperature ramping experiment, visual bleaching of <italic>Favites</italic> sp. occurred much slower than in <italic>P. damicornis</italic> and we thus accelerated the bleaching process for <italic>Favites</italic> sp. through a combined temperature and light stress treatment (see Supplementary Methods). Our approach did not allow us to compare differences in photophysiology or the rate of symbiont loss between <italic>P. damicornis</italic> and <italic>Favites</italic> sp.</p>
</sec>
<sec><title>Optical Measurements</title>
<p>Spectral scalar irradiance E<sub>0</sub>(&#x03BB;) and reflectance <italic>R</italic><sub>H</sub>(&#x03BB;) measurements were performed in a flow chamber that was flushed at a flow rate of 0.5&#x2013;1 cm s<sup>-1</sup> with seawater at the same temperature as in the experimental bleaching treatment tank. Fiber-optic scalar irradiance microprobes with a spherical tip diameter of 80 &#x03BC;m (<xref ref-type="bibr" rid="B39">Rickelt et al., 2016</xref>) were used to measure the spectral light microenvironment on and within coral coenosarc and polyp tissues as described previously (<xref ref-type="bibr" rid="B61">Wangpraseurt et al., 2012</xref>; see Supplementary Methods for details).</p>
<p>Spectral reflectance measurements on intact corals (<italic>R</italic><sub>H</sub>) were performed with a flat-cut fiber-optic reflectance probe (2 mm diameter, Ocean Optics, USA) positioned at a 45&#x00B0; angle relative to the coral surface at a distance of 1 cm from the sample, using a similar measuring configuration as in <xref ref-type="bibr" rid="B41">Rodriguez-Roman et al. (2006)</xref>. Vertically incident light [E<sub>d</sub>(PAR) = 400 &#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup>] was provided by a fiber-optic tungsten halogen-lamp equipped with a collimating lens (Schott KL-2500, Germany). The coral reflected light measurements were normalized to the reflected light measured under identical optical configuration from a 99% white reflectance standard (Spectralon, Labsphere, USA). Scalar irradiance and reflectance spectra were also measured on bare skeletons (see Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S1</xref>).</p>
</sec>
<sec><title>Photosynthesis and Respiration Measurements</title>
<p>Clark-type O<sub>2</sub> microsensors (tip size of 25 &#x03BC;m, a 90% response time of &#x003C;0.5 s and a stirring sensitivity of &#x223C;1%; Unisense A/S, Aarhus, Denmark) were used to measure O<sub>2</sub> production and consumption of <italic>P. damicornis</italic> as described previously (<xref ref-type="bibr" rid="B61">Wangpraseurt et al., 2012</xref>; <xref ref-type="bibr" rid="B4">Brodersen et al., 2014</xref>). Sensor readings were linearly calibrated from measurements in air saturated water and anoxic water (flushed with N<sub>2</sub>). Percent air saturation in seawater at experimental temperature and salinity was transformed to O<sub>2</sub> concentration (&#x03BC;mol O<sub>2</sub> L<sup>-1</sup>) using gas tables (Ramsing and Gundersen, Unisense, Denmark; <ext-link ext-link-type="uri" xlink:href="http://www.unisense.com">www.unisense.com</ext-link>). All O<sub>2</sub> microsensor measurements were performed in the same configuration as the scalar irradiance microsensor measurements but with the O<sub>2</sub> microsensors approaching the coral surface at an angle of &#x223C;10&#x00B0; relative to the vertically incident light. Measurements of gross photosynthesis at the coral surface were performed using the light&#x2013;dark shift technique (see <xref ref-type="bibr" rid="B38">Revsbech and Jorgensen, 1983</xref> for detailed description) followed by measurements of steady-state O<sub>2</sub> concentration profiles from the coral tissue surface through the diffusive boundary layer (DBL) and into the mixed turbulent water phase above (<xref ref-type="bibr" rid="B4">Brodersen et al., 2014</xref>) under an incident photon irradiance of E<sub>d</sub>(PAR) = 400 &#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup>. Steady-state O<sub>2</sub> conditions were usually achieved within 5&#x2013;10 min at a constant light level and each microsensor profile took on average about 5 min. We chose E<sub>d</sub> = 400 &#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup> as a irradiance level close to the photosynthetic maximum based on previous microsensor measurements under comparable conditions (<xref ref-type="bibr" rid="B58">Ulstrup et al., 2006</xref>) and preliminary results from variable chlorophyll fluorimetry-based measurement of relative photosynthetic electron transport rates vs. irradiance (data not shown). The coral was then placed in darkness for >15 min before O<sub>2</sub> profiles measured the dark respiration of the coral holobiont (<xref ref-type="bibr" rid="B47">Schrameyer et al., 2014</xref>). Additional measurements of the dark-adapted maximum quantum yield of PSII were done with a commercial variable chlorophyll fluorescence imaging system (Imaging-PAM, Walz GmbH, Germany; see supporting information and Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S2</xref>).</p>
</sec>
<sec><title><italic>Symbiodinium</italic> Density and Pigment Dynamics</title>
<p><italic>Symbiodinium</italic> cell density was determined for small tissue areas of <italic>Favites</italic> sp. using a microsampling technique (<xref ref-type="bibr" rid="B23">Kemp et al., 2008</xref>), where individual polyps were sampled by careful separation of the coral tissue from the underlying skeleton using a syringe and needle (see supporting information and Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S3</xref>). This technique was not used for <italic>P. damicornis</italic> since the thin tissue of this coral was firmly attached to the skeleton, making it difficult to completely remove the tissue with a syringe. Instead small branch tips (maximum of 0.5&#x2013;0.8 cm in length) were collected, crushed and centrifuged to separate host tissue, skeleton and <italic>Symbiodinium</italic> (see supporting information). For both coral species, <italic>Symbiodinium</italic> density was then estimated using a haemocytometer. Additional tissue samples were collected (as described above) for HPLC (high performance liquid chromatography) analysis using standard protocols (see supporting information).</p>
</sec>
<sec><title>Data Analysis</title>
<p>Measured raw spectra were integrated between 400 and 700 nm (PAR) using the mathematical integration function of Origin Pro 9.1 (Origin, USA). The <italic>in vivo</italic> light enhancement relative to the incident downwelling irradiance was calculated as E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR). Data was averaged for measurements performed on day 1 (&#x2018;healthy,&#x2019; water temperature 22&#x00B0;C) and day 10 (&#x2018;bleached,&#x2019; water temperature 33&#x00B0;C). We also expressed the enhancement of spectral scalar irradiance, E<sub>0</sub>(&#x03BB;), of bleached corals relative to healthy corals as E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub>. Areal rates of gross photosynthesis (PG; nmol O<sub>2</sub> cm<sup>-2</sup> s<sup>-1</sup>) were calculated by depth integration of the volumetric rates assuming constant rates of photosynthesis over the entire tissue. Tissue thickness of <italic>P. damicornis</italic> was ca. 300 &#x03BC;m for polyp tissues and ca. 150 &#x03BC;m for coenosarc tissues as determined with scalar irradiance microsensors (data not shown, see <xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>). Net photosynthesis (PN) and dark respiration (RD) rates were calculated using Fick&#x2019;s first law of diffusion (see <xref ref-type="bibr" rid="B7">Chan et al., 2016</xref> for details). Light respiration of the coral holobiont (LR) was then calculated as the difference between gross and net photosynthesis (<xref ref-type="bibr" rid="B47">Schrameyer et al., 2014</xref>). In order to compare <italic>Symbiodinium</italic> dependent gross photosynthetic rates between healthy and bleached corals, we normalized our areal rates to cell density. Values of O<sub>2</sub> production in nmol O<sub>2</sub> cm<sup>-2</sup> s<sup>-1</sup> was divided by the average measured cell density (in cells per cm<sup>-2</sup>) to express gross photosynthesis in fmol O<sub>2</sub> cell<sup>-1</sup> s<sup>-1</sup>.</p>
</sec>
<sec><title>Statistical Analysis</title>
<p>Regression analyses were used to test for the relationship between <italic>Symbiodinium</italic> cell density and <italic>in vivo</italic> coral tissue scalar irradiance. A non-linear curve fitting procedure was applied to test the relationship between the <italic>in vivo</italic> E<sub>0</sub> (expressed in % of E<sub>d</sub>) measured in polyp surface, polyp aboral and coenosarc surface tissues of <italic>P. damicornis</italic> and the cell density (cells per cm<sup>-2</sup>). The fitting used the non-linear Levenberg Marquardt iteration algorithm and applied a power-law function (i.e., y = ax<sup>-b</sup>) to yield the adjusted <italic>R<sup>2</sup></italic> and reduced &#x03C7;<sup>2</sup> goodness of fit parameters. Physiological and optical parameters measured for <italic>P. damicornis</italic> and <italic>Favites</italic> sp., including F<sub>v</sub>/F<sub>m</sub>, P<sub>G</sub>, P<sub>N</sub>, R<sub>D</sub>, L<sub>R</sub>, E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) were compared between healthy (day = 1) and bleached (day = 10) conditions using a two-sample Student&#x2019;s <italic>t</italic>-test (for equal variances) or Welch&#x2019;s <italic>t</italic>-test (for unequal variances). Statistical tests were performed in Origin Pro 9.1 (Origin, USA).</p>
</sec>
</sec>
<sec><title>Results</title>
<sec><title>Effect of Bleaching on Cell Density and <italic>Symbiodinium</italic> Pigmentation</title>
<p><italic>Symbiodinium</italic> cell density was significantly reduced at the end of the experiment for both <italic>P. damicornis</italic> and <italic>Favites</italic> sp. (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>). In <italic>P. damicornis</italic>, the mean cell density was reduced 4.2-fold from 1.43 &#x00D7; 10<sup>6</sup> (&#x00B1; SE 2.8 &#x00D7; 10<sup>5</sup>) to 3.42 &#x00D7; 10<sup>5</sup> (&#x00B1; 7.5 &#x00D7; 10<sup>4</sup> SE) cells cm<sup>-2</sup> [Student&#x2019;s <italic>t</italic>-test: <italic>t</italic>(10) = 3.7, <italic>p</italic> = 0.003; Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S4</xref>]. In <italic>Favites</italic> sp., there was a comparable fourfold reduction in cell density from 2.30 &#x00D7; 10<sup>6</sup> (3.6 &#x00D7; 10<sup>5</sup>) to 5.6 &#x00D7; 10<sup>5</sup> (1.4 &#x00D7; 10<sup>5</sup> SE) cells cm<sup>-2</sup> tissue surface area [Student&#x2019;s <italic>t</italic>-test: <italic>t</italic>(10) = 3.3, <italic>p</italic> = 0.008]. Chlorophyll <italic>a</italic> density (per g of host tissue biomass) decreased by about 2.1- and 1.7-fold for <italic>P. damicornis</italic> [Student&#x2019;s <italic>t</italic>-test: <italic>t</italic>(8) = 1.6, <italic>p</italic> = 0.146] and <italic>Favites</italic> sp. [Welch&#x2019;s <italic>t</italic>-test: <italic>t</italic>(7.5) = 2.4, <italic>p</italic> = 0.047], respectively although this difference was only statistically significant for <italic>Favites</italic> sp. (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p><bold>Changes in <italic>Symbiodinium</italic> cell density (cells per cm<sup>-2</sup> surface area) and chlorophyll <italic>a</italic> density (in &#x03BC;g chlorohyll <italic>a</italic> per g dry host tissue biomass) during the bleaching experiment.</bold> Healthy corals (black symbols) and bleached corals (gray symboles) were measured at the beginning (day 1) and the end of the experiment (day 10). Data are mean &#x00B1; SEM; <italic>n</italic> = 4&#x2013;8 for cell density estimates and <italic>n</italic> = 6&#x2013;9 for chlorophyll <italic>a</italic> estimates.</p></caption>
<graphic xlink:href="fmicb-08-00059-g001.tif"/>
</fig>
</sec>
<sec><title>Effect of Bleaching on <italic>In vivo</italic> Scalar Irradiance</title>
<p>For all corals and measurement locations, <italic>in vivo</italic> photon scalar irradiance, E<sub>0</sub>(PAR), increased in bleached compared to healthy corals (<bold>Figures <xref ref-type="fig" rid="F2">2a&#x2013;e</xref></bold>). In <italic>P. damicornis</italic>, the greatest increase in E<sub>0</sub>(PAR) was measured in the aboral polyp tissues, where PAR was about 3.65-fold higher in bleached vs. healthy corals [E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 1.97 &#x00B1; 0.21 SE and 0.54 &#x00B1; 0.09 SE, respectively; Student&#x2019;s <italic>t</italic>-test: <italic>t</italic>(10) = -6.1, <italic>p</italic> &#x003C; 0.001; <bold>Figure <xref ref-type="fig" rid="F2">2d</xref></bold>]. The E<sub>0</sub>(PAR) enhancement was less pronounced for oral polyp tissues and coenosarc oral tissues with ratios of E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 1.58 and 1.66, respectively (<bold>Figure <xref ref-type="fig" rid="F2">2d</xref></bold>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p><bold>Effect of bleaching on <italic>in vivo</italic> photon scalar irradiance, E<sub>0</sub>(PAR)-enhancement.</bold> Typical measurement locations over the coenosarc and polyp tissues of <italic>Pocillopora damicornis</italic> <bold>(a)</bold> and <italic>Favites</italic> sp. <bold>(b,c)</bold>. Scale bar = 1 mm <bold>(a)</bold> and 2 mm <bold>(b,c)</bold>. Note the scalar irradiance microprobe <bold>(b)</bold> and extruded mesenterial filaments (mf) in the stressed <italic>Favites</italic> sp. coral <bold>(c)</bold>. E<sub>0</sub>(PAR)-enhancement was expressed as E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) and was measured in healthy and bleached <italic>P. damicornis</italic> <bold>(d)</bold> and <italic>Favites</italic> sp. <bold>(e)</bold>. Measurements were performed on the surface of coenosarc and polyp tissues as well as in the lowermost aboral tissue layer (vertical depths closest to the skeleton) for healthy (day 1) and bleached corals (day 10). Data are mean &#x00B1; SE (<italic>n</italic> = 6 corallite-level replicates).</p></caption>
<graphic xlink:href="fmicb-08-00059-g002.tif"/>
</fig>
<p>For <italic>Favites</italic> sp., E<sub>0</sub>(PAR) for aboral polyp tissues of bleached corals [E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 0.26 &#x00B1; 0.03 SE] was &#x223C;3.5 times higher than in respective healthy tissues [E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 0.07 &#x00B1; 0.02 SE] but this difference was not significant [Welch&#x2019;s <italic>t</italic>-test: <italic>t</italic>(3.1) = -2.3, <italic>p</italic> = 0.11]. E<sub>0</sub>(PAR) on the oral polyp tissue increased by 1.13 times upon bleaching [Welch&#x2019;s <italic>t</italic>-test: <italic>t</italic>(3.5) = -5.5, <italic>p</italic> = 0.007, <bold>Figure <xref ref-type="fig" rid="F2">2e</xref></bold>]. For coenosarc tissues, we similarly observed a proportionally greater E<sub>0</sub>(PAR) enhancement upon bleaching in aboral tissues E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 2.3 vs. oral tissues E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 1.27 (<bold>Figure <xref ref-type="fig" rid="F2">2e</xref></bold>). The magnitude of E<sub>0</sub>(PAR) enhancement in bleached relative to healthy coral tissues was similar for <italic>Favites</italic> sp. and <italic>P. damicornis</italic>, but the absolute enhancement was different as low light niches remained in <italic>Favites</italic> sp. [E<sub>0</sub>(PAR)/E<sub>d</sub>(PAR) = 0.25 &#x00B1; 0.03] (<bold>Figures <xref ref-type="fig" rid="F2">2d,e</xref></bold>).</p>
</sec>
<sec><title>Effect of Bleaching on the <italic>In vivo</italic> Spectral Light Environment</title>
<p><italic>In vivo</italic> E<sub>0</sub>(&#x03BB;) of bleached corals was increased relative to healthy corals (&#x03BB; = 400&#x2013;700 nm) for both species; however, the relative enhancement of E<sub>0</sub>(&#x03BB;), i.e., E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub>, was dependent on coral species and tissue type (<bold>Figures <xref ref-type="fig" rid="F3">3A&#x2013;D</xref></bold> and <bold><xref ref-type="fig" rid="F4">4A,B</xref></bold>). In <italic>P. damicornis</italic>, E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub> in aboral polyp tissues was highest for blue light [E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub> &#x223C; 5 for &#x03BB; = 400&#x2013;500 nm] followed by far red light [E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub> &#x223C; 4 for &#x03BB; = 670&#x2013;690 nm] and least pronounced for green to red light [E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub> &#x223C; 3 for &#x03BB; = 550&#x2013;650 nm] (<bold>Figures <xref ref-type="fig" rid="F3">3C</xref></bold> and <bold><xref ref-type="fig" rid="F4">4A</xref></bold>). In contrast, tissue surface E<sub>0</sub>(&#x03BB;) did not exhibit such pronounced spectral features and scalar irradiance was more evenly enhanced between 400 and 700 nm in both polyp and coenosarc tissues (<bold>Figures <xref ref-type="fig" rid="F3">3A,C</xref></bold> and <bold><xref ref-type="fig" rid="F4">4A</xref></bold>). A similar trend was observed in <italic>Favites</italic> sp., where maximal E<sub>0</sub>(&#x03BB;) enhancement was measured in aboral polyp tissues in the blue (&#x03BB;&#x2248;500 nm) and far-red (&#x03BB;&#x2248;650&#x2013;695 nm) (<bold>Figures <xref ref-type="fig" rid="F3">3B,D</xref></bold> and <bold><xref ref-type="fig" rid="F4">4B</xref></bold>). Note that no light enhancement factors were calculated for aboral polyp tissues for wavelengths less than 500 nm, due to a relatively low signal to noise ratio (a result of the almost completely depleted blue light in healthy corals). E<sub>0</sub>(&#x03BB;) was fairly evenly enhanced between 400 and 700 nm for surface tissues of <italic>Favites</italic> (<bold>Figure <xref ref-type="fig" rid="F4">4B</xref></bold>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p><bold>Effect of coral bleaching on <italic>in vivo</italic> spectral scalar irradiance, E<sub>0</sub>(&#x03BB;) expressed in % of the incident downwelling irradiance, E<sub>d</sub>(&#x03BB;).</bold> Measurements were performed on the coenosarc <bold>(A,B)</bold> and polyp tissue <bold>(C,D)</bold> of <italic>P. damicornis</italic> (left panel), and <italic>Favites</italic> sp. (right panel). Solid and dashed lines represent measurements performed in aboral tissues and at the tissue surface, respectively. Measurements were performed on healthy corals (day 1; black) and bleached corals (day 10; gray). Data are mean &#x00B1; SE (<italic>n</italic> = 6 corallite-level replicates).</p></caption>
<graphic xlink:href="fmicb-08-00059-g003.tif"/>
</fig>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p><bold>Spectral light enhancement in bleached relative to healthy corals.</bold> The enhancement in E<sub>0</sub>(&#x03BB;) and <italic>R</italic><sub>H</sub>(&#x03BB;) due to bleaching was calculated as E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub> and <italic>R</italic><sub>H</sub>(&#x03BB;)<sub>bleached</sub>/<italic>R</italic><sub>H</sub>(&#x03BB;)<sub>healthy</sub>. <italic>R</italic><sub>H</sub>(&#x03BB;) (dotted lines) was measured at a distance of 1 cm from the tissue surface and E<sub>0</sub>(&#x03BB;) was measured at the tissue surface (dashed lines) and in the aboral tissue layers closest to the skeleton (solid lines). Data was collected for both polyp (blue) and coenosarc tissues (red) for <italic>P. damicornis</italic> <bold>(A)</bold>, and <italic>Favites</italic> sp. <bold>(B).</bold> Note that <italic>P. damicornis R</italic><sub>H</sub>(&#x03BB;) measurements include areas covering both polyp and coenosarc tissues, and that E<sub>0</sub>(&#x03BB;) measurements were not performed in aboral coenosarc tissues of <italic>P. damicornis</italic> due to lack of sufficient tissue thickness. Original <italic>R</italic><sub>H</sub>(&#x03BB;) spectra for bleached and healthy corals are shown in Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S5</xref>.</p></caption>
<graphic xlink:href="fmicb-08-00059-g004.tif"/>
</fig>
<p>Enhancement of spectral reflectance, <italic>R</italic><sub>H</sub>(&#x03BB;)<sub>bleached</sub>/<italic>R</italic><sub>H</sub>(&#x03BB;)<sub>healthy</sub> in <italic>P. damicornis</italic> followed a similar wavelength dependency as the E<sub>0</sub>(&#x03BB;) enhancement in aboral polyp tissues, i.e., it peaked for &#x03BB; = 420&#x2013;550 nm and &#x03BB; = 650&#x2013;690 nm (<bold>Figure <xref ref-type="fig" rid="F4">4A</xref></bold>; Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S5</xref>). However, the <italic>R</italic><sub>H</sub>(&#x03BB;)<sub>bleached</sub>/<italic>R</italic><sub>H</sub>(&#x03BB;)<sub>healthy</sub> ratio was lower than the E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub> ratio, i.e., the increase in reflectance was lower than the increase in <italic>in vivo</italic> scalar irradiance of bleached tissues relative to healthy tissues (<bold>Figure <xref ref-type="fig" rid="F4">4A</xref></bold>). For polyp tissues of <italic>Favites</italic> sp., <italic>R</italic><sub>H</sub>(&#x03BB;)<sub>bleached</sub>/<italic>R</italic><sub>H</sub>(&#x03BB;)<sub>healthy</sub> was &#x223C;1 and &#x223C;1.5 for &#x03BB; = 400&#x2013;500 and 550&#x2013;690 nm, respectively (<bold>Figure <xref ref-type="fig" rid="F4">4B</xref></bold>). For coenosarc tissues, <italic>R</italic><sub>H</sub>(&#x03BB;)<sub>bleached</sub>/<italic>R</italic><sub>H</sub>(&#x03BB;)<sub>healthy</sub> was similar to polyp tissues for wavelengths >550 nm but was &#x003C;1 at 450&#x2013;510 nm (<bold>Figure <xref ref-type="fig" rid="F4">4B</xref></bold>). Thus reflectance measurements were not able to capture tissue depth- and tissue type-dependent dynamics in scalar irradiance, as can be seen by the more moderate increase in reflectance relative to the <italic>in vivo scalar</italic> irradiance during bleaching (<bold>Figure <xref ref-type="fig" rid="F4">4</xref></bold>).</p>
</sec>
<sec><title><italic>Symbiodinium</italic> Cell Density and <italic>In vivo</italic> Scalar Irradiance Dynamics in <italic>Pocillopora damicornis</italic></title>
<p><italic>In vivo</italic> E<sub>0</sub>(PAR) enhancement and <italic>Symbiodinium</italic> cell density was described by a power-law function (<bold>Figures <xref ref-type="fig" rid="F5">5A&#x2013;C</xref></bold>) from all data collected throughout the bleaching experiment. The best fit was obtained when <italic>Symbiodinium</italic> cell density was matched against E<sub>0</sub>(PAR) enhancement measured in aboral polyp tissues (<italic>R</italic><sup>2</sup> = 0.45; <bold>Figure <xref ref-type="fig" rid="F5">5C</xref></bold>) (compared to <italic>R</italic><sup>2</sup> fits of 0.43 and 0.30 for coenosarc surface and polyp surface tissues, respectively; <bold>Figures <xref ref-type="fig" rid="F5">5A,B</xref></bold>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p><bold><italic>In vivo</italic> photon scalar irradiance enhancement E<sub>0</sub>(PAR)/ E<sub>d</sub>(PAR) as a function of <italic>Symbiodinium</italic> cell density in <italic>Pocillopora damicornis</italic> for coenosarc surface tissues <bold>(A)</bold>, polyp surface tissues <bold>(B)</bold>, and polyp aboral tissues <bold>(C)</bold>.</bold> The best fit (solid red lines) in all cases was a power-law relationship (y = ax<sup>-b</sup>). Red and light red areas represent 95% confidence and prediction intervals, respectively.</p></caption>
<graphic xlink:href="fmicb-08-00059-g005.tif"/>
</fig>
</sec>
<sec><title>Photosynthesis and Respiration of <italic>Pocillopora damicornis</italic></title>
<p>Areal rates of gross photosynthesis in bleached coenosarc and polyp tissues were reduced by 70 and 25%, respectively, when compared to the corresponding healthy tissues (<bold>Figure <xref ref-type="fig" rid="F6">6A</xref></bold>), but these measurements do not account for symbiont loss after bleaching (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>). Instead, cell-specific rates of gross photosynthesis were about 1.3- and 3.2-fold higher in coenosarc and polyp tissues, respectively, for <italic>Symbiodinium</italic> remaining in the bleached corals as compared to the unbleached corals (<bold>Figure <xref ref-type="fig" rid="F6">6D</xref></bold>). Measurements of the maximum quantum yield of PSII showed that upon bleaching F<sub>v</sub>/F<sub>m</sub> was reduced by about 50% as compared to healthy corals (0.38 &#x00B1; 0.03 vs. 0.8 &#x00B1; 0.01, respectively; mean &#x00B1; SEM; Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S2</xref>).</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p><bold>Areal rates (in nmol O<sub>2</sub> cm<sup>-2</sup> s<sup>-1</sup>) of gross photosynthesis (A</bold>; PG), net photosynthesis (<bold>B</bold>; PN), and apparent light respiration (<bold>C</bold>; LR = PG-PN) and dark respiration (<bold>E</bold>; RD) in coenosarc and polyp tissues of healthy (black bars) and bleached fragments (gray bars) of <italic>Pocillopora damicornis</italic>. <bold>(D,F)</bold> same as left panels but normalized to cell density, i.e., cell specific-rates. Data are mean &#x00B1; SEM (<italic>n</italic> = 10&#x2013;12 corallite-level replicates). Significant differences (<italic>p</italic> &#x003C; 0.05) between bleached and healthy tissues are marked with an asterisk.</p></caption>
<graphic xlink:href="fmicb-08-00059-g006.tif"/>
</fig>
<p>Measurements of areal net photosynthesis generally showed net O<sub>2</sub> production except for measurements in bleached coenosarc tissues that exhibited a net O<sub>2</sub> consumption of 0.046 (&#x00B1; 0.015 SE) nmol O<sub>2</sub> cm<sup>-2</sup> s<sup>-1</sup> in the light (<bold>Figure <xref ref-type="fig" rid="F6">6B</xref></bold>). There was a trend toward increased holobiont light respiration in bleached vs. healthy coenosarc tissues (<bold>Figure <xref ref-type="fig" rid="F6">6C</xref></bold>), while a decreased light respiration was found in polyp tissues after bleaching (0.40 &#x00B1; 0.08 vs. 0.33 &#x00B1; 0.03 nmol O<sub>2</sub> cm<sup>-2</sup> s<sup>-1</sup>; mean &#x00B1; SEM). In contrast, apparent light respiration rates per <italic>Symbiodinium</italic> cell increased after bleaching by 4.2- and 2.5-fold for coenosarc and polyp tissues, respectively (<bold>Figure <xref ref-type="fig" rid="F6">6F</xref></bold>). Areal dark respiration rates did not change significantly after the bleaching experiment for both coensoarc and polyp tissues (Student&#x2019;s <italic>t</italic>-test, <italic>p</italic> > 0.05; <bold>Figure <xref ref-type="fig" rid="F6">6E</xref></bold>).</p>
</sec>
</sec>
<sec><title>Discussion</title>
<p>Microscale light measurements revealed an average E<sub>0</sub>(PAR)-enhancement of &#x223C;2 for <italic>P. damicornis</italic>, with maximal values of up to 2.6 within bleached polyp tissues (<bold>Figure <xref ref-type="fig" rid="F5">5</xref></bold>). Such measured enhancement in <italic>P. damicornis</italic> can at first approximation be explained by simple light scattering events within the coral skeleton (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>; <xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>). As <italic>Symbiodinium</italic> cell density becomes reduced (<bold>Figure <xref ref-type="fig" rid="F1">1</xref></bold>), more light penetrates toward the skeleton (<bold>Figure <xref ref-type="fig" rid="F3">3A</xref></bold>) and an increased fraction of this light is backscattered (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>). For a flat isotropically scattering skeleton with a reflectance, <italic>R</italic>, the average path length of upwelling photons is twice that of photons in the incident collimated light beam traversing a thin layer of coral tissue (ignoring tissue scattering) (<xref ref-type="bibr" rid="B27">K&#x00FC;hl and J&#x00F8;rgensen, 1994</xref>). Here, the contribution of the coral skeleton reflectance on the scalar irradiance can be calculated as (<xref ref-type="bibr" rid="B24">Kort&#x00FC;m, 2012</xref>): E<sub>o</sub> = (1 + 2R)E<sub>d</sub>, where <italic>E</italic><sub>d</sub> is the incident downwelling irradiance. The flux absorbed by <italic>Symbiodinium</italic> can thus be estimated as &#x03A6;<sub>abs</sub> = <inline-graphic xlink:href="fmicb-08-00059-i001.jpg"/> + <inline-graphic xlink:href="fmicb-08-00059-i002.jpg"/> = (1 + 2R)<inline-graphic xlink:href="fmicb-08-00059-i002.jpg"/>, where <inline-graphic xlink:href="fmicb-08-00059-i002.jpg"/> is the absorption of the incident beam, i.e., <inline-graphic xlink:href="fmicb-08-00059-i002.jpg"/> = A &#x00D7; E<sub>d</sub>, where <italic>A</italic> is the absorption cross-section of <italic>Symbiodinium</italic> (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>). Diffuse reflectance of <italic>P. damicornis</italic> skeletons in our study was on average <italic>R</italic> = 0.5 (data not shown), which is comparable to previous measurements (<italic>R</italic> = 0.36, <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>). As such, our theoretical calculations would predict an E<sub>0</sub>(PAR)-enhancement of 2, a value consistent with our direct measurements for the thin bleached coenosarc tissues of <italic>P. damicornis</italic> (<bold>Figure <xref ref-type="fig" rid="F5">5A</xref></bold>).</p>
<p>In contrast to the consistent theoretical and measured E<sub>0</sub>(PAR)-enhancement values for <italic>P. damicornis</italic> coenosarc tissues, we observed an E<sub>0</sub>(PAR) enhancement of >2 for polyp tissues (<bold>Figures <xref ref-type="fig" rid="F5">5B,C</xref></bold>). E<sub>0</sub>(PAR) enhancement of >2 suggests an additional scattering contribution from the coral tissue (<xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>) and/or from the concave corallite architecture (<xref ref-type="bibr" rid="B37">Ow and Todd, 2010</xref>). Indeed, measurements for bare skeletons (Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S1</xref>) revealed a higher E<sub>0</sub> within the corallite than over the coenosteum, suggesting that the small concave corallite for <italic>P. damicornis</italic> (width and length &#x223C;1 mm; <xref ref-type="bibr" rid="B36">Nothdurft and Webb, 2007</xref>) effectively homogenizes and redirects the incident radiation, through multiple reflections from the skeletal walls toward the center of the corallite, whereas light escapes more easily as diffuse reflectance from the rather flat coenosteum. Given the thin tissue in <italic>P. damicornis</italic>, multiple scattering by such millimeter-sized skeletal structures likely contributes to the observed higher E<sub>0</sub>(PAR)-enhancement of <italic>Symbiodinium</italic> in polyp vs. coenosarc tissues in the intact living coral (<bold>Figure <xref ref-type="fig" rid="F4">4A</xref></bold>). However, the E<sub>0</sub>(PAR)-enhancement observed in intact bleached <italic>P. damicornis</italic> was still higher than for bare skeletons indicating additional light enhancement through tissue scattering. It is possible that diffusely backscattered photons from the skeleton are trapped by the tissue (see detailed discussion in <xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>) and/or that the scattering coefficient is higher for coral tissue than for coral skeleton, as is the case for <italic>Favites</italic> sp. (<xref ref-type="bibr" rid="B59">Wangpraseurt et al., 2016a</xref>).</p>
<p>The optical feedback hypothesis predicts an inverse power-law relationship between <italic>Symbiodinium</italic> cell density and <italic>in vivo</italic> light exposure, i.e., the rate of light field &#x2018;amplification&#x2019; increases as symbiont cell density decreases (<xref ref-type="bibr" rid="B56">Teran et al., 2010</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>). For a small cup-shaped polyp, with low tissue absorption and scattering, the greatest effect of corallite architecture on light scattering is expected in close proximity to the skeletal surface at the center of the corallite (<xref ref-type="bibr" rid="B56">Teran et al., 2010</xref>; <xref ref-type="bibr" rid="B59">Wangpraseurt et al., 2016a</xref>). Our measurements for <italic>P. damicornis</italic> support these predictions since the highest rate of light enhancement was measured within aboral polyp tissues (<italic>R</italic><sup>2</sup> = 0.45, <bold>Figure <xref ref-type="fig" rid="F5">5C</xref></bold>). Scattering by (sub)millimeter-sized skeletal surface elements in such a thin-tissued coral with small polyps thus play a key role in the measured light enhancement dynamics upon bleaching.</p>
<p>Coral bleaching also involves a change in the spectral exposure of the remaining symbionts (<bold>Figure <xref ref-type="fig" rid="F4">4</xref></bold>). In a normally pigmented healthy coral, blue light (400&#x2013;450 nm) is rapidly attenuated vertically within the coral tissue due to peak light absorption by Chl <italic>a</italic>, leaving symbionts in aboral tissue layers exposed to a green to red shifted light spectrum (<bold>Figure <xref ref-type="fig" rid="F3">3</xref></bold>; <xref ref-type="bibr" rid="B53">Szab&#x00F3; et al., 2014</xref>). As coral bleaching progresses, symbionts in aboral tissues are progressively exposed to greater amounts of blue light (<bold>Figure <xref ref-type="fig" rid="F4">4</xref></bold>). It is important to note that such spectral changes could not be captured solely based on surface scalar irradiance or diffuse reflectance measurements (<bold>Figure <xref ref-type="fig" rid="F4">4</xref></bold>), highlighting the relevance of depth resolved measurement of <italic>in vivo</italic> scalar irradiance. Minor changes in the spectral composition of light can affect <italic>Symbiodinium</italic> photosynthesis <italic>in vivo</italic> (<xref ref-type="bibr" rid="B63">Wangpraseurt et al., 2014c</xref>) and it will be interesting in the future to study the effect of changing spectral exposure on symbiont photosynthesis along a vertical gradient within the tissue (<xref ref-type="bibr" rid="B30">Lichtenberg et al., 2016</xref>).</p>
<p>Our data demonstrated the presence of species-specific patterns of light modulation, whereby light gradients were alleviated in polyp tissues of <italic>P. damicornis</italic> but remained present in polyp tissues of <italic>Favites</italic> sp. after bleaching (<bold>Figures <xref ref-type="fig" rid="F3">3A&#x2013;D</xref></bold>). <italic>Favites</italic> sp. are characterized by thick, light scattering tissues (<xref ref-type="bibr" rid="B60">Wangpraseurt et al., 2014a</xref>, <xref ref-type="bibr" rid="B59">2016a</xref>) with host pigments such as GFP (<xref ref-type="bibr" rid="B44">Salih et al., 2000</xref>; <xref ref-type="bibr" rid="B32">Lyndby et al., 2016</xref>) and mycosporine-like amino acids (<xref ref-type="bibr" rid="B8">Dunlap and Shick, 1998</xref>; <xref ref-type="bibr" rid="B29">Lesser and Farrell, 2004</xref>) that often remain present during bleaching (<xref ref-type="bibr" rid="B50">Smith et al., 2013</xref>). Although, <italic>P. damicornis</italic> does also have a GFP-like pigment (<xref ref-type="bibr" rid="B54">Takabayashi and Hoegh-Guldberg, 1995</xref>), the GFP-like pigments in <italic>Favites</italic> sp. are arranged in a chromatophore system that strongly enhances light scattering (<xref ref-type="bibr" rid="B32">Lyndby et al., 2016</xref>; <xref ref-type="bibr" rid="B64">Wangpraseurt et al., 2016b</xref>) facilitating a steep light attenuation along the enhanced optical path within thick scattering coral tissue (<xref ref-type="bibr" rid="B61">Wangpraseurt et al., 2012</xref>; <xref ref-type="bibr" rid="B32">Lyndby et al., 2016</xref>). Our finding of low light levels in the aboral polyp tissues therefore suggests that tissue background scattering and absorption effectively attenuate light even in bleached tissues of <italic>Favites</italic> sp. Additionally, differences between <italic>P. damicornis</italic> and <italic>Favites</italic> sp. in skeleton optical properties are likely (<xref ref-type="bibr" rid="B33">Marcelino et al., 2013</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>; <xref ref-type="bibr" rid="B59">Wangpraseurt et al., 2016a</xref>), which would further affect the fraction of light &#x2018;amplification&#x2019; by the skeleton (<xref ref-type="bibr" rid="B33">Marcelino et al., 2013</xref>). Thus our results indicate that symbionts in <italic>P. damicornis</italic> will be more severely affected by &#x2018;optical feedback&#x2019; than symbionts in <italic>Favites</italic> sp. during coral bleaching. The moderate light environment in aboral polyp tissues of bleached <italic>Favites</italic> sp. could facilitate photoprotection of remaining cryptic <italic>Symbiodinium</italic> sp. (<xref ref-type="bibr" rid="B49">Silverstein et al., 2012</xref>), which could be a key determinant for symbiont repopulation and subsequent coral recovery from bleaching (<xref ref-type="bibr" rid="B43">Rowan et al., 1997</xref>).</p>
<p>However, it is likely that a variety of structural design solutions exist that provide photoprotection on different spatial scales (see also <xref ref-type="bibr" rid="B68">Yost et al., 2013</xref>). For a branching coral, such as <italic>P. damicornis</italic>, light attenuates along the branch due to shading by neighboring branches (<xref ref-type="bibr" rid="B22">Kaniewska et al., 2011</xref>). The magnitude of light attenuation along a single branch is similar to the light attenuation observed within the polyp tissues of <italic>Favites</italic> sp. (compare <xref ref-type="bibr" rid="B22">Kaniewska et al., 2011</xref> and <xref ref-type="bibr" rid="B61">Wangpraseurt et al., 2012</xref>). Thus the presence of moderate light microenvironments is expected for <italic>P. damicornis</italic> due to its colony-level architectural complexity, which was however, not assessed in the present study. We visually observed that corals bleached first over the coenosarc tissue area, while symbionts remained within the tentacles of <italic>P. damicornis</italic> despite the enhanced <italic>in vivo</italic> light environment in polyp tissues. It was not possible to measure the light microenvironment within the highly contractile tentacle tissue and it remains unknown, whether a more moderate light microenvironment remained within the tentacles facilitating resistance to bleaching. Additionally, it is possible that bleaching was alleviated for tentacle tissues because of tentacle movement leading to enhanced gas exchange (<xref ref-type="bibr" rid="B48">Shashar et al., 1993</xref>) and possibly reducing the build-up of high O<sub>2</sub> levels alleviating oxidative stress.</p>
<p>We observed increased symbiont cell-specific rates of gross O<sub>2</sub> evolution and light respiration in bleached relative to healthy <italic>P. damicornis</italic>, although F<sub>v</sub>/F<sub>m</sub> values and areal photosynthetic rates (gross and net) decreased (<bold>Figure <xref ref-type="fig" rid="F6">6</xref></bold>). Numerous studies have reported lowered F<sub>v</sub>/F<sub>m</sub> values (<xref ref-type="bibr" rid="B66">Warner et al., 1999</xref>; <xref ref-type="bibr" rid="B20">Jones et al., 2000</xref>; Supplementary Figure <xref ref-type="supplementary-material" rid="SM1">S2</xref>) and reduced net photosynthesis of <italic>Symbiodinium</italic> in response to thermal and/or light stress (<xref ref-type="bibr" rid="B18">Iglesias-Prieto and Trench, 1994</xref>; <xref ref-type="bibr" rid="B65">Warner et al., 1996</xref>, <xref ref-type="bibr" rid="B66">1999</xref>), but few studies have measured gross O<sub>2</sub> evolution independent of light respiration (<xref ref-type="bibr" rid="B26">K&#x00FC;hl et al., 1995</xref>; <xref ref-type="bibr" rid="B1">Abrego et al., 2008</xref>; <xref ref-type="bibr" rid="B47">Schrameyer et al., 2014</xref>). A lowering of F<sub>v</sub>/F<sub>m</sub> is often interpreted as a sign of photoinhibition of <italic>Symbiodinium</italic> and can result from the formation of non-functional PS II reaction centers, i.e., a downregulation of PSII efficiency that still allows for O<sub>2</sub> evolution to occur (<xref ref-type="bibr" rid="B13">Hill et al., 2004</xref>). The high cell-specific gross photosynthetic rate (<bold>Figure <xref ref-type="fig" rid="F6">6D</xref></bold>) could be explained as a downregulation of PSII efficiency counteracting the rapidly increasing <italic>in vivo</italic> irradiance (<bold>Figure <xref ref-type="fig" rid="F4">4</xref></bold>). It is also possible that the observed dynamics reflect photoacclimation of <italic>Symbiodinium</italic>, as high light acclimation involves an increase in the functional absorption cross section of PSII that leads to a lowering of F<sub>v</sub>/F<sub>m</sub> (<xref ref-type="bibr" rid="B12">Hennige et al., 2008</xref>; <xref ref-type="bibr" rid="B51">Suggett et al., 2009</xref>). Additionally, it is possible that bleaching affected the symbiont community, potentially favoring more efficient photosynthesisers under high temperature (<xref ref-type="bibr" rid="B42">Roth, 2014</xref>; <xref ref-type="bibr" rid="B46">Sampayo et al., 2016</xref>).</p>
<p>The relative increase of cell-specific photosynthesis for bleached relative to healthy corals will depend on the quantity of incident solar radiation. Assuming a scenario where incident radiation saturates photosynthesis in all algal cell layers of a healthy coral, the <italic>in vivo</italic> light enhancement due to bleaching would not allow for a further enhancement of photosynthesis. Likewise, a faster increase in temperature would lead to more severe photoinhibtion and ultimately reduced photosynthetic rates. Additionally, our data showed that cell density (per surface area) declined to a greater extent than chlorophyll content (per g host tissue biomass). The reason for this mismatch remains unknown but could be related to reduced tissue thickness, which would affect chlorophyll but not cell density data, and/or potentially reflect the limited capacity of the HPLC to detect the Chl <italic>a</italic> signals in our microsamples. Normalization of gross photosynthesis data per chlorophyll <italic>a</italic> content of the corals showed that gross photosynthesis was only enhanced for polyp tissues (by about 1.6-fold) of bleached vs. healthy <italic>P. damicornis</italic> corals (data not shown). The enhancement of cell-specific photosynthesis during coral bleaching should thus be interpreted with caution and needs further investigation.</p>
<p>Light respiration significantly increased during the bleaching experiment, accounting for about 35% of gross photosynthesis in healthy tissues up to about 150% of gross photosynthesis in bleached tissues (<bold>Figure <xref ref-type="fig" rid="F6">6</xref></bold>). Enhanced, apparently light-driven, O<sub>2</sub> consumption is a sign of increased electron flow through alternative electron pathways, of which the Mehler reaction is especially prevalent in <italic>Symbiodinium</italic> (<xref ref-type="bibr" rid="B40">Roberty et al., 2014</xref>). While an upregulation of the Mehler reaction has been interpreted as a photoprotective mechanism to decrease excitation pressure on PSII under high light (<xref ref-type="bibr" rid="B40">Roberty et al., 2014</xref>), the Mehler reaction generates ROS that can readily lead to oxidative stress, if antioxidants such as superoxide dismutase and ascorbate peroxidase are not upregulated as well (<xref ref-type="bibr" rid="B25">Krueger et al., 2014</xref>; <xref ref-type="bibr" rid="B40">Roberty et al., 2014</xref>). Together, the enhanced metabolic activity likely reflects a response of <italic>Symbiodinium</italic> to the strongly accelerated <italic>in vivo</italic> light environment (<bold>Figure <xref ref-type="fig" rid="F5">5</xref></bold>) showing that coral microscale optics exert a key role in coral photophysiology.</p>
<p>Climate change-related coral bleaching is arguably the prime cause of global reef decline and better predictions of coral bleaching susceptibility rest on understanding the mechanisms at play (<xref ref-type="bibr" rid="B14">Hoegh-Guldberg, 1999</xref>; <xref ref-type="bibr" rid="B15">Hoegh-Guldberg et al., 2007</xref>; <xref ref-type="bibr" rid="B67">Weis, 2008</xref>). The optical feedback hypothesis (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>), whereby <italic>Symbiodinium</italic> undergoes light exposure &#x2018;amplification&#x2019; during coral bleaching (<xref ref-type="bibr" rid="B9">Enriquez et al., 2005</xref>; <xref ref-type="bibr" rid="B52">Swain et al., 2016</xref>) has lacked experimental evidence in terms of direct measures of the tissue light field before and during coral bleaching. Here, we give the first experimental proof that the <italic>in vivo</italic> scalar irradiance in corals is enhanced during coral bleaching due to changes in the balance between absorption and scattering upon loss of <italic>Symbiodinium</italic>. Light amplification differs between coral hosts, as tissue light gradients and optical shelter remained in the massive coral <italic>Favites</italic> sp. but were alleviated in <italic>P. damicornis</italic>. The finding of optical shelter in bleached <italic>Favites</italic> sp. tissues implies a photoprotective microenvironment that could sustain coral resilience by facilitating the repopulation from cryptic <italic>Symbiodinium</italic> after stress. Our study shows that coral bleaching can in fact enhance cell-specific photosynthetic rates of remaining <italic>Symbodinium</italic>, which is interpreted as a response to the accelerated <italic>in vivo</italic> light exposure during bleaching. We conclude that coral microscale optics have a fundamental role in shaping the radiative exposure of <italic>Symbiodinium</italic> and thus photophysiological stress responses during coral bleaching.</p>
</sec>
<sec><title>Author Contributions</title>
<p>All authors designed the experiment. JH and DW analyzed the data. DW, MK, DS, and JH interpreted the data. DW performed microsensor measurements and JH performed symbiont cell density and tissue surface area estimates. DW, JH, AL performed the experimental bleaching treatment. MK and PR provided new reagents, materials and tools: DW, MK, and JH wrote the paper with editorial input and consent from all co-authors.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This study was funded by a Danielle Simmons Award grant from the Australian Coral Reef Society (DW), a Science for Management Award from the Great Barrier Reef Marine Park Authority (DW), a Distinguished Postdoctoral Fellowship from the Carlsberg Foundation (DW), and a Sapere-Aude Advanced grant from the Danish Council for Independent Research &#x007C; Natural Sciences (MK). The authors declare no competing interests.</p></fn>
</fn-group>
<ack>
<p>We thank Unnikrishnan Kuzhiumparambil for performing the HPLC analysis and Christian Evenhuis for initial discussions. Giovanni Bernal and the staff at Heron Island research station are thanked for help with coral sample collection as well as excellent assistance in the field.</p>
</ack>
<sec sec-type="supplementary material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="http://journal.frontiersin.org/article/10.3389/fmicb.2017.00059/full#supplementary-material">http://journal.frontiersin.org/article/10.3389/fmicb.2017.00059/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.DOCX" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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<glossary>
<title>Abbreviations</title>
<def-list id="DL1">
<def-item>
<term>E<sub>d</sub>(PAR)</term>
<def>
<p>incident downwelling photon irradiance (&#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup>)</p>
</def>
</def-item>
<def-item>
<term>E<sub>0</sub>(PAR)</term>
<def>
<p>photon scalar irradiance (&#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup>)</p>
</def>
</def-item>
<def-item>
<term>E<sub>0</sub>(&#x03BB;)</term>
<def>
<p>spectral scalar irradiance (&#x03BC;mol photons m<sup>-2</sup> s<sup>-1</sup> nm<sup>-1</sup>)</p>
</def>
</def-item>
<def-item>
<term>E<sub>0</sub>(PAR)<sub>bleached</sub>/E<sub>0</sub>(PAR)<sub>healthy</sub></term>
<def>
<p>photon scalar irradiance enhancement of a bleached coral relative to a healthy coral</p>
</def>
</def-item>
<def-item>
<term>E<sub>0</sub>(&#x03BB;)<sub>bleached</sub>/E<sub>0</sub>(&#x03BB;)<sub>healthy</sub></term>
<def>
<p>spectral scalar irradiance enhancement of a bleached coral relative to a healthy coral</p>
</def>
</def-item>
<def-item>
<term>L<sub>R</sub></term>
<def>
<p>light respiration</p>
</def>
</def-item>
<def-item>
<term>NIR</term>
<def>
<p>near-infrared radiation</p>
</def>
</def-item>
<def-item>
<term>PAR</term>
<def>
<p>photosynthetically active radiation (400&#x2013;700 nm)</p>
</def>
</def-item>
<def-item>
<term>P<sub>N</sub></term>
<def>
<p>net photosynthesis</p>
</def>
</def-item>
<def-item>
<term>P<sub>G</sub></term>
<def>
<p>gross photosynthesis</p>
</def>
</def-item>
<def-item>
<term>R<sub>D</sub></term>
<def>
<p>dark respiration</p>
</def>
</def-item>
<def-item>
<term>R<sub>H</sub>(&#x03BB;)</term>
<def>
<p>spectral holobiont reflectance</p>
</def>
</def-item>
<def-item>
<term>R<sub>H</sub>(&#x03BB;)<sub>bleached</sub>/R<sub>H</sub>(&#x03BB;)<sub>healthy</sub></term>
<def>
<p>holobiont reflectance enhancement of a bleached coral relative to a healthy coral</p>
</def>
</def-item>
</def-list>
</glossary>
</back>
</article>