Candida strains and mutants are listed in Table 1 and were routinely propagated on YPD agar (10 g yeast extract, 20 g peptone, 20 g glucose, 15 g agar per liter) at 30°C and stored as frozen stocks in YPD medium with 15% (v/v) glycerol at −80°C.

All strains are listed in Table 1. The uridine auxotrophic CAI4-based C. albicans strains were complemented with URA3 by integration of a StuI-linearized CIp10 vector (Murad et al., 2000). Transformations were performed following standard procedures (Walther and Wendland, 2003). Briefly, cultures were washed and treated with lithium-acetate solution, the linearized vector was added together with carrier DNA and polyethylene glycol, and the cells were exposed to a 15 min heat shock at 44°C. Uridine-positive transformants were selected on SD agar. Integration at the RPS1 locus was confirmed by PCR.

The effect of rapamycin on cell proliferation was evaluated via growth curve assays. Strains were pre-grown overnight in YPD at 30°C and after repeated washing they were diluted to OD₆₀₀ = 0.01 in YPD with and without supplementation of 5 nM rapamycin (Sigma-Aldrich and Merck KGaA, Darmstadt, Germany) solved in DMSO (Carl Roth GmbH & Co. KG, Karlsruhe, Germany) or an adequate amount of DMSO as control. Cultures were incubated at 30°C in a Magellan TECAN plate reader (Tecan I-Control Infinite® 200 Pro, Tecan Austria GmbH, Grödig, Austria) with the extinction in the wells at 600 nm determined over 48 h every 15 to 30 min after 30 s orbital shaking. Generation times as the time for one doubling of cell count was calculated in phases of exponential growth (Hall et al., 2014). Additionally, the initial time points and the extinction in the wells at 600 nm at the stationary phase were measured.

Chlamydospore production was induced on corn meal (CM)-Tween 80 agar (BD, Heidelberg, Germany), rice meal-Tween 80 agar (BD, Heidelberg, Germany), yeast nitrogen base medium (YNB) without ammonium sulfate (MP, Santa Ana, CA, USA) agar, or SLAD agar (YNB without ammonium sulfate, with 2% glucose), each supplemented as indicated. The plates were incubated at 27°C for 7 days in darkness and chlamydospore formation was monitored microscopically (Axiovert, Zeiss, Göttingen, Germany). For quantification of chlamydospores a score system (chlamydospore index, CI) was introduced with a scale ranging from none (0), intermediate (1–2) to full (3) chlamydospore production (see Supplementary Figure S1 for details).

Different substances were tested for their influence on chlamydospore formation. Additional carbon sources (glucose, maltose, lactose, sucrose, galactose, glycerol, and mannitol), ammonium sulfate, peptone, caffeine (Sigma-Aldrich and Merck KGaA, Darmstadt, Germany) or heat-inactivated fetal calf serum (Bio&SELL GmbH, Feucht, Germany) were directly added to the liquid agar at 60°C. Dibutyryl-cAMP (db-cAMP; Sigma-Aldrich and Merck KGaA, Darmstadt, Germany), rapamycin (solved in DMSO), or DMSO (vehicle control) were distributed on top of solid agar plates to avoid heat-induced degradation. Effects of inhibitors were tested with agar diffusion assays. To this end, an 8 mm diameter hole in the agar plate was filled with liquid test substances. After the liquid was completely soaked into the agar, the Candida strains were streaked radially from the agar hole.

Protein light sensors (IreA, IreB and VeA) of Aspergillus nidulans were aligned to the proteome of C. albicans SC5314 and C. dubliniensis Wü284 using the PBLAST tool at the Candida Genome Database (http://www.candidagenome.org).

Nutrient availability controls morphogenesis in a diverse range of fungi. For example, next to mating type, lack of nitrogen or fermentable carbon sources is the most important factor to induce sexual sporulation of Saccharomyces cerevisiae (Mitchell, 1994). Fungal secondary metabolism (Tudzynski, 2014) as well as many pathogenicity pathways (Limjindaporn et al., 2003) are similarly responsive to nitrogen availability. Morphological transitions that are triggered by nitrogen starvation include pseudohyphal growth of diploid S. cerevisiae (Gimeno et al., 1992) and the Gcn4-dependent filamentation by C. albicans (Tripathi et al., 2002). Some impact of nitrogen on chlamydosporulation has also been described for C. albicans (Jansons and Nickerson, 1970b; Dujardin et al., 1980b) but no such information is available for C. dubliniensis so far. Hence, we tested the effect of nutrient addition to chlamydospore-inducing corn meal tween (CM) agar and rice agar. The results are shown in Table 2 using the chlamydospore index (CI) as a semi-quantitative score system (see Figure S1 for representative micrographs of different scores). Presence of additional 0.5% ammonium sulfate had no effect on the strong chlamydospore formation of both, C. albicans and C. dubliniensis, on these media (Figure 1A). Addition of a readily available carbon source (2% glucose) specifically inhibited C. albicans chlamydosporulation. However, only the presence of both, additional carbon and nitrogen sources, reduced chlamydospore formation in C. dubliniensis.

To elucidate this effect further, we used defined synthetic media. Pure water agar as a highly nutrient-restricted medium induced chlamydospores in both, C. albicans and C. dubliniensis [(Jansons and Nickerson, 1970b) and Figure 1B]. This was not visible on standard, N- and C-source containing SD agar, suggesting that nutrient supplementation inhibits sporulation. In order to distinguish between nitrogen-, carbon-, and other nutrient-responsive effects, a minimal medium—yeast nitrogen base (YNB)—was used to provide only essential trace metals, vitamins, and minerals. This medium readily induced chlamydospores in both species (Figure 1B), and we thus excluded a major sporulation effect by the presence of micronutrients alone. The addition of 2% glucose to YNB (a medium equal to SLAD agar) blocked chlamydospore formation again specifically in C. albicans. Interestingly, SLAD agar is a medium well-known to induce hyphae-like and invasive growth in both, C. albicans and S. cerevisiae (Cutler et al., 2001; Laxman and Tu, 2011), which may indicate an evolutionary connection between pseudohypha and chlamydospore formation pathways. YNB agar supplementation with 0.5% ammonium sulfate dramatically reduced, but did not abolish sporulation by C. albicans. Similar to CM agar, only a combination of nitrogen and carbon sources inhibited sporulation of C. dubliniensis, while addition of a single macronutrient had little or no inhibiting effect.

In contrast to ammonium, the addition of even low concentrations of peptone as an organic nitrogen source (0.2%) had a strong repressive effect on chlamydospore formation, independent of the Candida species (Figure 1B). This observation indicates a crucial role of amino acid presence and catabolism rather than just total nitrogen content on sporulation. Previous transcriptome analysis under chlamydospore-inducing conditions showed a significant up-regulation of peptide starvation response genes, e.g., the oligopeptide transporter gene PTR2 (Palige et al., 2013). Ptr2 is a conserved high-affinity transporter which was shown to physically interact with the nutrient-sensing Tor1 and Tor2 complexes in S. cerevisiae (Aronova et al., 2007). This Ptr2 up-regulation and the inhibitory effect of peptone thus indicate that sensing of peptide starvation is a major chlamydospore-inducing factor. However, in CM agar, peptone inhibited chlamydospores only in C. albicans. Therefore, in comparison to YNB agar, CM agar seems to be a generally stronger trigger of chlamydospore formation, able to induce robust sporulation by both Candida species and showing less inhibition by the presence of nutrients for C. dubliniensis.

Another species-specific repressing role of peptone, here on filamentation, has been described earlier: In the presence of peptone, UME6 gene expression is low in C. dubliniensis, but high in C. albicans, allowing hyphae formation only by the latter (O'Connor et al., 2010). Artificial overexpression of UME6 consequently enables filamentation of C. dubliniensis. Interestingly, Ume6 interacts with the chromatin remodeling complex Isw2 in S. cerevisiae to repress expression of meiotic genes (Goldmark et al., 2000) and a C. albicans isw2Δ mutant fails to form chlamydospores (Nobile et al., 2003). Hence, we tested sporulation of a C. albicans ume6Δ deletion as well as a UME6^OE overexpression strain on standard and peptone-supplemented CM agar. Against our expectation, the ume6Δ mutant was not impaired in chlamydosporulation on CM agar, and UME6 overexpression did not allow chlamydospore formation on peptone- or glucose-containing media, although hyphae were formed readily (Figure S2). In contrast, deletion of the filamentation repressor NRG1 in C. albicans was epistatic to the glucose- or peptone-induced chlamydospore inhibition and its effect could only be reversed by ammonium sulfate or high peptone levels (Table 2). Therefore, we concluded that a strong link between chlamydospore and filamentation regulation exists, but that UME6 is not a key factor in the former.

Eukaryotes sense availability of nutrients like nitrogen and glucose via the highly conserved Tor1 kinase complex. Under conditions of sufficient nutrient supply, Tor1 is active and drives a signal cascade that supports cell proliferation, whereas Tor1 inhibition under starvation mediates autophagy (Kamada et al., 2004) and stimulates nitrogen uptake as well as expression of nitrogen catabolite-repressed genes (Cardenas et al., 1999). We hence supplemented chlamydospore-inducing media with the Tor1 antagonists rapamycin and caffeine to investigate a possible role of Tor1-signaling in sporulation. Sublethal rapamycin (20 nM) and caffeine (5 mM) concentrations allowed sustained growth, but efficiently abolished chlamydospore formation of C. albicans on CM agar (Figure 2A). Similarly, chlamydospore formation was also strongly reduced in C. dubliniensis, although some sporulation remained (CI 1) even under rapamycin treatment (Figure 2A). To further investigate this inhibition, we next tested the response to rapamycin and caffeine on the C. dubliniensis-specific chlamydospore inducer medium, SLAD agar (YNB + 2% glucose). Here both substances totally abolished sporulation (Figure 2B), and therefore rapamycin had an even more severe effect on C. dubliniensis than in CM agar-based assays. Similar effects were seen on chlamydospore-inducing niger seed (Guizotia abyssinica) agar (Staib and Morschhäuser, 1999) or rice agar (data not shown) which suggests a conserved TOR-related mechanism independent of the specific inducing medium.

How can the nutrient sensor TOR influence fungal morphology on low-nitrogen agar? Under nitrogen starvation, diploid S. cerevisiae cells are known to grow as pseudohyphae that invade SLAD agar surfaces (Gimeno et al., 1992), and this morphological transition can be abolished by rapamycin treatment (Cutler et al., 2001). Therefore, it has been suggested that the pseudohyphae of baker's yeast rely on a low, but stable TOR activity during nitrogen starvation (Cutler et al., 2001). According to this model, both the presence of nutrients with its increased TOR activity as well as rapamycin-mediated repression of the TOR pathway can lead to inhibition of filamentation (Cutler et al., 2001). Parallels can be drawn to our observation of a rapamycin-sensitive chlamydospore formation by Candida spp., and we thus propose that similar to S. cerevisiae pseudohyphae, a limited amount of Tor1 activity is needed to induce chlamydospores. Differences in basal TOR activity levels and distinct thresholds to supplementary nutrients and Tor1 antagonists could thus explain the species-specific response.

Analogous to pseudohyphal growth of S. cerevisiae, addition of TOR inhibitors to SLAD agar also blocks hyphal growth of C. albicans and pseudohyphal growth of Candida lusitaniae and Cryptococcus neoformans (Cutler et al., 2001). Therefore, it seems that chlamydospore formation relies on conserved morphogenesis pathways that are dependent on the nutritional state sensor TOR, but adapted to drive different growth forms during evolution.

As C. albicans nrg1Δ sporulated nearly constitutively even in presence of several good nutrient sources, the mutant strain was similarly treated with rapamycin and caffeine. However, even in the presence of inhibitors chlamydospore formation was not reduced (Figure S3), although the colonies appeared smaller. A likely explanation is that nutrient-driven pathways, including the TOR network, positively control the transcriptional repressor Nrg1. In line with this suggestion, gene expression of NRG1 was shown to be higher in C. albicans than C. dubliniensis under conditions where chlamydospore formation was observed only in the latter (Staib and Morschhäuser, 2005). In combination with our data, this suggests that a low but stable TOR activity keeps NRG1 expression at such reduced levels that allow the intense chlamydosporulation of C. dubliniensis. Analogous observations have been made during hyphae development, were both, rapamycin treatment and NRG1 deletion, in C. dubliniensis phenocopied C. albicans-like filamentation in liquid media (Sullivan and Moran, 2011).

Currently, 19 genes are known to be essential for proper chlamydosporulation in C. albicans, among them two genes encoding key components of the TOR regulatory pathway: Sch9 and Mds3 (Sonneborn et al., 1999; Davis et al., 2002; Nobile et al., 2003; Staib and Morschhäuser, 2005; Eisman et al., 2006). To follow up on the connection between TOR signaling and chlamydospore formation, we tested the resistance and growth of known chlamydospore-defective C. albicans mutants (suv3Δ, sch9Δ, mds3Δ, rim101Δ, vps11Δ, dit2Δ) as well as of the hypersporulative nrg1Δ mutant, in the presence of rapamycin as altered rapamycin resistance can serve as an indicator for a role in the TOR signaling cascade (Huang et al., 2004). All mutants were viable and most grew at roughly wild-type levels in YPD without drug, with slightly, but significantly prolonged generation times of the sch9Δ and vps11Δ mutant strains (Figures 3A,D). The nrg1Δ and the mds3Δ strains showed a more severe reduction in optical density (Figure 3E) due to and in proportion to their hyperfilamentous morphology. Moreover, nrg1Δ and vps11Δ reached stationary growth phases later than the other strains (Figures 3A,F). In presence of rapamycin, we identified three groups of mutants: The strongly resistant strains suv3Δ, mds3Δ, and dit2Δ with early stationary phases (Figure 3I); the highly susceptible strains sch9Δ, vps11Δ, and nrg1Δ showing significantly increased doubling times or even no growth (Figures 3G–I); and the strain rim101Δ, the growth of which was not influenced by rapamycin. These results mirror the key role of TOR signaling during chlamydospore formation, but additional TOR-independent pathways seem to exist, as indicated by the rapamycin-unaffected mutant lacking the transcription factor Rim101. A possible explanation may be that chlamydospore-inducing media generally have a slightly acidic pH around 5–6 (Montazeri and Hedrick, 1984), and pH-signaling is mediated by Rim101 and its activator Rim13, both of which are known to be essential for full chlamydosporulation (Nobile et al., 2003).

Our analyses thus showed a connection to TOR signaling, which comprises a complex network that controls growth and longevity in eukaryotes as well as morphology in fungi (Shertz and Cardenas, 2011). In order to better understand the function of this signaling cascade during chlamydospore formation, we went on to screen a selection of C. albicans TOR signaling deletion mutants for chlamydospore production on CM agar (Figure 4). A key target of the Tor complex is the Sit4 phosphatase, which has multiple cellular functions including regulation of cell cycle, cytoskeleton assembly, and rDNA gene expression (Angeles de la Torre-Ruiz et al., 2002). The loss of Sit4 in S. cerevisiae results in defective pseudohyphal differentiation (Cutler et al., 2001), and a C. albicans sit4Δ mutant is both afilamentous and avirulent (Lee et al., 2004). In contrast, on CM agar a C. albicans sit4Δ deletion strain showed no defect in chlamydosporulation (Figure 4), indicating no function of Sit4 during chlamydospore formation, in stark contrast to filamentation.

In the presence of sufficient nutrients, the TOR pathway blocks uptake and catabolism of nitrogenous substrates, but under nitrogen-poor conditions, it facilitates nuclear entry of the GATA factors Gat1 and Gln3 to mediate expression of nitrogen catabolite repressed (NCR) genes (Beck and Hall, 1999). In parallel, TOR represses the expression of amino acid biosynthesis genes under sufficient nutrient availability via the eIF2α kinase Gcn2 that activates the transcription factor Gcn4. Thus, regulation occurs on transcriptional, translational and post-translational levels (Cherkasova and Hinnebusch, 2003). The role of these two nitrogen-responsive cascades for chlamydospore formation was assayed using C. albicans deletion mutants of key factors on CM agar.

Both pathways seem to play an important role during chlamydospore development, because deletion of either the central activator of amino acid biosynthetic genes, Gcn4 (Tripathi et al., 2002), or the transcriptional activator of NCR genes, Gat1 (Limjindaporn et al., 2003), caused chlamydospore deficiency (Figure 4). In fact, the C. albicans gat1Δ deletion mutant is a prime example for distinct chlamydospore and hypha regulation programs, as the chlamydospore defect was independent of its filamentation capacity. In contrast to our results, a previous study on the role of C. albicans Gat1 during morphogenesis found no reduction in both, hyphae and chlamydospore formation (Limjindaporn et al., 2003), possibly due to media-specific differences. Overall, a diminished TOR activity and the resultant starvation response thus seem to mediate chlamydospore formation.

The second regulator of NCR gene expression is the transcription factor Gln3, which shares many functions with Gat1 (Liao et al., 2008). Deletion of GLN3 resulted in a reduced efficiency of chlamydospore formation combined with an extended sporulation initiation. Both GATA factors, Gln3 and Gat1, enable yeasts to selectively utilize preferential nitrogen sources via NCR, a mechanism which is indispensible for fungal pathogens like Aspergillus fumigatus and C. albicans during infections (Lee et al., 2013). Of about 100 direct NCR target genes we hence chose to investigate the role of the ammonium transporter genes, encoding Mep1 and Mep2, by testing the corresponding mutants for their chlamydosporulation capability. To exclude an effect of the functional redundancy of these transporters, a C. albicans mep1Δ/mep2Δ double knockout mutant (Biswas and Morschhäuser, 2005) was used. Sporulation was unimpaired in this mutant, in agreement with the non-repressive effect of additional ammonium in CM agar. Thus, this ammonium-specific pathway seems not to be involved in sensing a chlamydospore-inducing environment. This phenotype stands in an interesting contrast to the impact of the high affinity transporter Mep2 on hyphae formation: The N-terminal region of the transporter is essential for C. albicans filamentation on SLAD agar (Biswas and Morschhäuser, 2005).

In contrast to ammonium, amino acid homeostasis is under control of Gcn2, which activates Gcn4—a pathway that is controlled by TOR under amino acid excess (Tournu et al., 2005). Whereas, Gcn4 is known to be essential under amino acid starvation and to have a large impact on yeast-to-hypha transitions in C. albicans (Tripathi et al., 2002), Gcn2 has a minor role in filamentation processes and is only involved in N-acetylglucosamine (GlcNAc)-induced hyphae development (Tournu et al., 2005; Kamthan et al., 2012). In our experiments, the deletion of GCN4, but not GCN2, inhibited chlamydospore formation. This suggests a Gcn2-independent route of Gcn4 activation under our tested conditions. In agreement with our previously observed peptone-induced repression, the amino acid starvation response seems to be a crucial element during chlamydospore development by C. albicans.

Common chlamydospore-inducing media are based on corn or rice and are therefore rich in starch, indicating that polysaccharides have an inducing or at least non-repressing effect on chlamydospore development. Complex carbohydrates are known to influence fungal morphology: In S. cerevisiae, starch degradation is associated with the ability to grow invasively and form pseudohyphae (Vivier et al., 1997) and polymeric cyclodextrines were described to induce hyphae by C. albicans (Fekete-Forgács et al., 1997). The repressing effect of glucose on chlamydosporulation, in contrast, was described almost half a century ago for C. albicans (Jansons and Nickerson, 1970b). Here, we tested a variety of carbon sources supplemented to CM and YBN agars (Table 2 and Figure 5) and analyzed their effect on C. albicans and C. dubliniensis wild type strains as well as the C. albicans nrg1Δ mutant. A direct correlation of the presence of fermentable mono- and disaccharides (glucose, galactose, maltose, sucrose, and glucose-containing serum) and inhibition of chlamydospore development was evident only for C. albicans. Furthermore, glucose is known to be the dialysable germ tube-inducing component in serum (Hudson et al., 2004) and the addition of 2% serum to CM agar similarly blocked chlamydospore formation by C. albicans. Hence, both glucose and serum, seem to play opposing roles during hyphae formation on one side and chlamydospore development on the other. In contrast, chlamydospore formation of both, the C. dubliniensis wild type strain and the C. albicans nrg1Δ mutant, was resistant to the addition of sugars. Similar differences exist in filamentation: Serum alone is not sufficient to induce hyphae by C. dubliniensis and additional glucose inhibits hyphae formation to some extent (O'Connor et al., 2010). Together, these results point toward a rewired glucose response under chlamydospore-inducing conditions: Glucose is an important hyphae inducer and chlamydospore repressor of C. albicans, whereas the same substrate plays the opposite, albeit less pronounced role in morphogenic transitions of C. dubliniensis. Our results with the C. albicans nrg1Δ mutant furthermore indicate that the nutrient-induced chlamydospore repression of C. albicans is likely due to Nrg1-mediated repression of gene expression. A glucose-driven regulation of Nrg1 has been described in the fungal pathogen C. neoformans, where expression of the NRG1 homolog is controlled in response to carbohydrate availability (Cramer et al., 2006).

Notably, supplementation with non-fermentable carbon sources like glycerol and lactose did not inhibit, but rather enhanced sporulation by C. albicans (Figure 5), suggesting that only readily utilizable nutrients can block the chlamydospore formation in response to starvation. We found similar repressing effects by both glucose and peptone for C. albicans, but in other fungi saccharides have a significantly higher inhibitory potential than nitrogen sources. A low carbon-nitrogen ratio is, for example, the most important inductor of chlamydospore production in soil-borne Fusarium species (Griffin, 1976), where they serve as dormant structures under starvation conditions (Smolinska, 2000).

Glucose has a broad range of effects on morphogenetic switches, and, in yeasts, its downstream signaling is mediated mainly via the Ras-cAMP-protein kinase A (PKA) pathway (Feng et al., 1999; Hudson et al., 2004). TOR signaling plays also a minor role in the glucose response (Hardwick et al., 1999). Overlaps exist, e.g., in form of Tor1 effector kinase Sch9 which inhibits PKA activity (Zhang et al., 2011) and as a suppression of TOR deficiency due to constitutive stimulation of the RAS-cAMP pathway in yeast (Schmelzle et al., 2004). Therefore, a reliable association of one nutritional trigger or repressor of chlamydospore formation to a distinct pathway is difficult. We therefore investigated the possible role of the Ras-cAMP-PKA pathway during chlamydosporulation directly. A first link toward cAMP signaling was indicated by a study on the transcriptional activator Efg1. In C. albicans, Efg1 acts as a downstream effector of the cAMP-PKA pathway, and an efg1Δ deletion mutant exhibited a chlamydosporulation defect (Sonneborn et al., 1999). We thus systematically investigated more pathway members for their function in chlamydospore formation.

Different environmental stimuli, including hyphae-initiating conditions, activate the Ras1 GTPase. This initiates a cascade by the activation of the Cyr1 adenylyl cyclase, which catalyzes the formation of cyclic AMP (cAMP) (Rocha et al., 2001). High levels of cAMP in turn activate PKA, which phosphorylates and thus regulates transcription factors like Efg1 (Inglis and Sherlock, 2013). The level of cAMP is tightly regulated in response to external stimuli, and cAMP hydrolysis is driven by the high affinity phosphodiesterase Pde2 (see also Figure 8).

A mutant lacking RAS1 in C. albicans lost the ability to form chlamydospores (Figure 6). The ras1Δ mutant is also known to be afilamentous on several media, but hyphae formation can be regained by supplementation with cell-permeable dibutyryl (db-) cAMP (Rocha et al., 2001). To test its effect on sporulation, we produced CM agar plates with a concentration gradient of db-cAMP by punching a hole into the agar and filling it with a solution of 100 mM db-cAMP. High db-cAMP concentrations fully inhibited sporulation of both Candida wild type strains alike. However, at the same concentrations, we identified a zone of increased chlamydospore formation for the C. albicans ras1Δ mutant (Figure 6). A similar effect was observed using a cyr1Δ mutant (not shown). In further experiments, we found that a concentration of 10 mM db-cAMP in CM agar was sufficient to inhibit chlamydospores formation in the wild type, but induced sporulation in the ras1Δ mutant (data not shown). Moreover, addition of 10 mM db-cAMP inhibited sporulation of C. dubliniensis on SLAD agar. Reasoning that, based on the ras1Δ phenotype, a certain level of cAMP is required for chlamydosporulation, we tested additional db-cAMP under repressive conditions like nutrient-rich CM agar. However, we were not able to re-induce chlamydospores by C. albicans or C. dubliniensis (Figure S4).

The intracellular level of cAMP is tightly regulated and the Pde2 phosphodiesterase degrades cAMP (Jung and Stateva, 2003). We thus used a C. albicans pde2Δ deletion mutant to investigate the effect of cAMP overload on chlamydosporulation. As expected, on CM agar a C. albicans pde2Δ deletion mutant produced significantly more hyphae than the wild type (Jung and Stateva, 2003), but, interestingly, chlamydospore formation was normal (Figure S5). Similarly, it has previously been shown that heterologous expression of CaPDE2 in C. dubliniensis reduced filamentation, but did not modify chlamydospore production on the diagnostic niger (G. abyssinica) agar (Staib and Morschhäuser, 2005). In contrast to the nrg1Δ mutant, PDE2 deletion did not rescue sporulation in presence of rapamycin or glucose on CM agar (Figure S5). Therefore, the C. albicans pde2Δ mutant is another example where hyphae and chlamydospore formations are distinctly regulated.

Active RAS-cAMP signaling was thus shown to be essential to initiate chlamydospores, but no significant species-specific differences were evident. This is reminiscent of the fact that cAMP levels are not at the basis of the characteristically low hyphae formation of C. dubliniensis, and that neither a hyperactive Ras1 nor elevated cAMP levels can enhance its filamentation (Moran et al., 2007). Supporting this notion, comparative genomics revealed that the C. albicans and C. dubliniensis Ras-cAMP pathway are not diverged (Jackson et al., 2009).

Finally, we tested the effect of light on chlamydosporulation in Candida. Incubation in darkness has been known for a long time as an inducer of chlamydospore formation by C. albicans (Dujardin et al., 1980a), but the light-sensing mechanism or its regulators are still unidentified. We verified the light sensitivity of the C. albicans wild type strain, which mostly failed chlamydosporulation on CM upon permanent light exposure. Interestingly, although complete darkness is generally thought to be required for their production, we observed C. albicans chlamydospores in areas of high cell density even under light (Figure 7). Furthermore, in contrast to the C. albicans wild type, both C. dubliniensis and the C. albicans nrg1Δ deletion mutant readily produced unaltered (CI 3) amounts of chlamydospores regardless of light exposure and cell density (Figure 7). The restoration of chlamydosporulation by the C. albicans nrg1Δ strain suggests that light exposure may be signaled via a pathway that triggers the central repressor Nrg1. On the other hand, C. dubliniensis is often found in environmental samples (Nunn et al., 2007; McManus et al., 2009), which may have selected for a niche-adapted higher resistance to sunlight.

Other fungal species use light as a signal to regulate their life cycle and metabolism [reviewed in (Tisch and Schmoll, 2010)]. In the filamentous fungus A. nidulans, for example, light is sensed via the velvet complex, which controls sexual reproduction and production of secondary metabolites (Bayram et al., 2008). Velvet complex mutants of A. nidulans consequently fail conidiation and sexual sporulation (Kato et al., 2003). In addition, light sensing controls glucose metabolism in filamentous fungi, as illumination influences glycolysis, the pentose phosphate pathway, or the Krebs cycle (Tisch and Schmoll, 2010). All these processes are involved in glucose starvation and could therefore provide a link to the regulation of chlamydospore production in Candida. Comparative protein sequence analysis (PBLAST), however, revealed no evident homologs of phytochromes or other light sensors in Candida species. Therefore, although we found some clues to the signal transduction and the species-specific differences, the mechanism of light sensing itself remains obscure. Given the absence of evident light sensors, production of reactive oxygen species during light exposure may be suggested as an alternative mechanism, which could feasibly connect light to the chlamydospore-negative phenotypes of the C. albicans hog1Δ and goa1Δ deletion mutants, as the deleted genes are involved in stress responses (Eisman et al., 2006; Bambach et al., 2009).

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.