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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Med.</journal-id>
<journal-title-group>
<journal-title>Frontiers in Medicine</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Med.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">2296-858X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmed.2025.1737184</article-id>
<article-version article-version-type="Version of Record" vocab="NISO-RP-8-2008"/>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Original Research</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Novel variants of monogenic diabetes and impact of genetic diagnosis on treatment strategies</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Stankute</surname> <given-names>Ingrida</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
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</contrib>
<contrib contrib-type="author">
<name><surname>Cemerkaite</surname> <given-names>Aiste</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
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<contrib contrib-type="author">
<name><surname>Leonaviciute</surname> <given-names>Gryte</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Data curation" vocab-term-identifier="https://credit.niso.org/contributor-roles/data-curation/">Data curation</role>
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</contrib>
<contrib contrib-type="author">
<name><surname>Sukys</surname> <given-names>Marius</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Data curation" vocab-term-identifier="https://credit.niso.org/contributor-roles/data-curation/">Data curation</role>
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<contrib contrib-type="author">
<name><surname>Aleknaviciene</surname> <given-names>Kristina</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Data curation" vocab-term-identifier="https://credit.niso.org/contributor-roles/data-curation/">Data curation</role>
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</contrib>
<contrib contrib-type="author">
<name><surname>Ugenskiene</surname> <given-names>Rasa</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Formal analysis" vocab-term-identifier="https://credit.niso.org/contributor-roles/formal-analysis/">Formal analysis</role>
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<uri xlink:href="https://loop.frontiersin.org/people/2382505"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Verkauskiene</surname> <given-names>Rasa</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Conceptualization" vocab-term-identifier="https://credit.niso.org/contributor-roles/conceptualization/">Conceptualization</role>
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</contrib>
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<aff id="aff1"><label>1</label><institution>Institute of Endocrinology, Medical Academy, Lithuanian University of Health Sciences</institution>, <city>Kaunas</city>, <country country="lt">Lithuania</country></aff>
<aff id="aff2"><label>2</label><institution>Medical Academy, Lithuanian University of Health Sciences</institution>, <city>Kaunas</city>, <country country="lt">Lithuania</country></aff>
<aff id="aff3"><label>3</label><institution>Department of Genetics and Molecular Medicine, Medical Academy, Lithuanian University of Health Sciences</institution>, <city>Kaunas</city>, <country country="lt">Lithuania</country></aff>
<author-notes>
<corresp id="c001"><label>&#x0002A;</label>Correspondence: Ingrida Stankute, <email xlink:href="mailto:ingrida.stankute@lsmuni.lt">ingrida.stankute@lsmuni.lt</email></corresp>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-01-16">
<day>16</day>
<month>01</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2025</year>
</pub-date>
<volume>12</volume>
<elocation-id>1737184</elocation-id>
<history>
<date date-type="received">
<day>01</day>
<month>11</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>14</day>
<month>12</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>12</month>
<year>2025</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2026 Stankute, Cemerkaite, Leonaviciute, Sukys, Aleknaviciene, Ugenskiene and Verkauskiene.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Stankute, Cemerkaite, Leonaviciute, Sukys, Aleknaviciene, Ugenskiene and Verkauskiene</copyright-holder>
<license>
<ali:license_ref start_date="2026-01-16">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<p>Monogenic diabetes (MD) is a rare form of diabetes resulting from single-gene defects. While diagnostic guidelines are well established for young patients, individuals &#x0003E;25 years are frequently overlooked, despite the clinical value of molecular diagnosis for personalized therapy.</p>
<sec>
<title>Aim</title>
<p>To evaluate genetic sequencing outcomes and their implications for treatment optimization in patients diagnosed with diabetes between 2017 and 2024 across all age groups.</p></sec>
<sec>
<title>Methods</title>
<p>Among 509 individuals tested for suspected MD, 78 (60.3% female) had a confirmed molecular diagnosis. Genetic testing was performed in patients with negative pancreatic autoantibodies, a family history of diabetes, or stable hyperglycemia without insulin requirement.</p></sec>
<sec>
<title>Results</title>
<p>The median age at MD diagnosis was 18.3 (4&#x02013;68.1) years, with a median diabetes duration of 4.5 (0&#x02013;50) years. Forty-three patients (55.1%) were diagnosed before age 25 and thirty-five (45.6%) after 25 years. GCK variants predominated in both groups (81.4% and 74.3%, respectively), followed by HNF1A, HNF4A, and HNF1B. After molecular confirmation, 75% (18/24) of eligible patients underwent actionable treatment changes according to genotype, while six did not benefit from therapy adjustment.</p></sec>
<sec>
<title>Conclusion</title>
<p>These findings demonstrate a high diagnostic yield (15.3%) for MD and emphasize the need to broaden testing criteria to enable precise, gene-guided and on time treatment decisions.</p></sec></abstract>
<kwd-group>
<kwd>MODY</kwd>
<kwd>monogenic diabetes</kwd>
<kwd>novel variants</kwd>
<kwd>precision therapy</kwd>
<kwd>WES&#x02014;whole-exome sequencing</kwd>
</kwd-group>
<funding-group>
<funding-statement>The author(s) declared that financial support was not received for this work and/or its publication.</funding-statement>
</funding-group>
<counts>
<fig-count count="1"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="19"/>
<page-count count="8"/>
<word-count count="4567"/>
</counts>
<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Precision Medicine</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Monogenic diabetes (MD) is a rare form of diabetes caused by one or more defects in a single gene (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>). Up to date, 43 genes have been linked to MD pathogenesis. Despite the fact that MD accounts for up to 5% of all diabetes cases, it is often misdiagnosed either due to phenotypical overlap with other types of diabetes or absence of clinical suspicion (<xref ref-type="bibr" rid="B1">1</xref>&#x02013;<xref ref-type="bibr" rid="B3">3</xref>).</p>
<p>MD is a heterogeneous group of disorders, the most common being maturity-onset diabetes of the young (MODY) and neonatal diabetes. MODY has well-established diagnostic guidelines in children and young adults, however, individuals over 25 are often overlooked despite the importance of genetic diagnosis for personalized treatment and family risk assessment (<xref ref-type="bibr" rid="B4">4</xref>). At least 14 genes have been confirmed to cause MODY, and eight of them (<italic>GCK, HNF1A, HNF4A, HNF1B, ABCC8, KCNJ11</italic>, 6q24, and <italic>INS</italic>) have clear clinical and therapeutic implications (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B3">3</xref>).</p>
<p>The aim of this study was to highlight the burden of undiagnosed MD and analyze genetic sequencing results and their implications for treatment optimizations during 2017&#x02013;2024.</p></sec>
<sec id="s2">
<title>Research design and methods</title>
<sec>
<title>Study participants</title>
<p>Overall, 509 patients were sequenced because of strong clinical suspicion of MD over a period of 8 years. Following consultation with a pediatric endocrinologist (for individuals &#x0003C; 18 years) or an adult endocrinologist (for individuals &#x02265;18 years) for the diagnosis and/or management of hyperglycemia or diabetes at the diabetes reference center at the Hospital of Lithuanian University of Health Sciences (LUHS), individuals meeting at least one criterion: negative diabetes autoimmune markers, measurable C-peptide secretion with type 1 diabetes (T1D) after 5 years of diagnosis, low/no-need for insulin treatment in presumed T1D, or positive family history of diabetes in the first line relatives or multiple cases in three generations, were referred for genetic counseling. Patient&#x00027;s age was not considered a selection criterion. Seventy-eight confirmed MD cases were included into further statistical analysis. The main clinical data analyzed were the age at MD diagnosis, diabetes duration, family history of diabetes, treatment before and after the molecular diagnosis, fasting C-peptide concentration. Patients were included into the study after giving an informed consent. The study was carried out in accordance with the 1964 Helsinki declaration and bioethics approvals by Kaunas Regional Biomedical Research Ethics Committee (No. BE-2-5 and BE-2-51).</p>
</sec>
<sec>
<title>Genetic analysis</title>
<sec>
<title>Genetic workflow overview</title>
<p>Peripheral blood samples were collected in EDTA tubes, and genomic DNA was extracted from peripheral blood leukocytes using the QIAamp DNA Mini Kit (Qiagen, Germany). DNA quantity and purity were assessed using the QIAxpert spectrophotometer (by measuring absorbance at 260 and 280 nm) (Qiagen, Germany). All samples were entered into a standardized diagnostic workflow consisting of (1) DNA extraction and quality control, (2) targeted Sanger sequencing (performed between 2017&#x02013;2021) or whole-exome sequencing (WES) (applied from 2022 onward), (3) primary and secondary bioinformatic analysis, and (4) tertiary clinical interpretation following ACMG, ACGS, and ClinGen guidelines. Schematic MD diagnostic workflow is presented in <xref ref-type="fig" rid="F1">Figure 1</xref>.</p>
<fig position="float" id="F1">
<label>Figure 1</label>
<caption><p>Schematic MD diagnostic workflow. MD, monogenic diabetes.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmed-12-1737184-g0001.tif">
<alt-text content-type="machine-generated">Flowchart showing the process of diagnosing monogenic diabetes. Starts with 509 individuals meeting specific criteria, such as negative autoimmune markers and positive family history. DNA extraction and quality control are performed, followed by either targeted Sanger sequencing (2017-2021) or whole-exome sequencing (from 2022). Bioinformatic analysis leads to final genetic interpretation using ACMG, ACGS, and ClinGen guidelines. Results confirm 78 individuals with a monogenic diabetes diagnosis.</alt-text>
</graphic>
</fig>
</sec>
<sec>
<title>Criteria for selecting sequencing method</title>
<p><bold>From 2017 till 2021:</bold></p>
<p>Targeted Sanger sequencing was used as the first-line approach for individuals with a strong clinical suspicion of MODY:</p>
<list list-type="bullet">
<list-item><p>autosomal dominant pattern in family history,</p></list-item>
<list-item><p>negative diabetes autoimmune markers,</p></list-item>
<list-item><p>preserved endogenous insulin secretion (measured by C-peptide), and</p></list-item>
<list-item><p>absence of features suggesting secondary or syndromic diabetes.</p></list-item>
</list>
<p><bold>From 2022 onward:</bold></p>
<p>After implementation of next-generation sequencing diagnostics, Sanger sequencing was no longer used, and WES became the sole first-line method for all newly referred patients and those who previously had inconclusive testing. WES was chosen to:</p>
<list list-type="bullet">
<list-item><p>enable broad multigene screening,</p></list-item>
<list-item><p>detect rare or atypical MD forms,</p></list-item>
<list-item><p>improve diagnostic yield, and</p></list-item>
<list-item><p>detect SNVs, indels, and CNVs in a single assay.</p></list-item>
</list></sec>
<sec>
<title>Targeted Sanger sequencing (2017&#x02013;2021)</title>
<p>From 2017 to 2021, targeted Sanger sequencing focused on the most common MODY-related genes: <italic>GCK, HNF1A</italic>, and <italic>HNF4A</italic>. Polymerase chain reaction (PCR) amplification of all coding exons and exon-intron boundaries was performed using gene-specific primers. PCR products were purified and sequenced bidirectionally on the Applied Biosystems 3,500 Genetic Analyzer. Chromatograms were compared with reference genomic sequences (NM_000162.5, NM_000545.8, NM_175914.4). Detected variants were interpreted using ACMG/ACGS/ClinGen guidelines. Copy number variation (CNV) was not assesed.</p></sec>
<sec>
<title>Whole-exome sequencing (2022&#x02013;present)</title>
<p>WES was performed for all samples starting in 2022. WES was conducted by CeGaT GmbH (T&#x000FC;bingen, Germany), including both primary and secondary bioinformatic analysis. Protein-coding exons, adjacent intronic regions, and selected disease-relevant non-coding regions were enriched using in-solution hybridization technology. Sequencing was performed on an Illumina platform, with an average diagnostic coverage of approximately 110 &#x000D7; . The analysis pipeline allowed detection of SNVs, small indels, and CNVs.</p>
<p>Tertiary bioinformatics analysis, including annotation, classification, and interpretation of variants in the <italic>HNF1A, PDX1, HNF4A, PDX1, HNF1B, GCK, NEUROD1, KLF11, CEL, PAX4, INS, BLK, AKT2, ABCC8, KCNJ11, APPL1, CP, CISD2, EIF2AK3, FOXP3, G6PC2, HADH, ZFP57, GLIS3, GLUD1, INSR, IER3IP1, PPARG, RFX6, SLC16A1, SLC2A2, NEUROG3, WFS1, UCP2</italic> genes, was conducted at the Department of Genetics and Molecular Medicine, LUHS. Variants were classified based on established criteria from ACMG, ACGS, and ClinGen.</p></sec>
<sec>
<title>Variant filtering and prioritization</title>
<p>For WES data, initial variant filtering and prioritization were performed using the Franklin (Genoox) clinical interpretation platform. The filtering strategy included:</p>
<list list-type="order">
<list-item><p>Quality-based filtering: removal of low-quality variants (coverage &#x0003C; 10 &#x000D7; , allele balance &#x0003C; 20%, or Phred quality &#x0003C; 20).</p></list-item>
<list-item><p>Frequency filtering: exclusion of variants with a minor allele frequency (MAF) &#x0003E;1% in gnomAD and internal population database, unless previously established as pathogenic.</p></list-item>
<list-item><p>Functional filtering: prioritization of variants predicted to have a functional impact, including missense, nonsense, canonical splice-site variants, frameshift indels, and exon-level deletions/duplications.</p></list-item>
<list-item><p>Gene-based filtering: retention of variants located within a predefined list of MODY and MD genes (full gene list provided upwards).</p></list-item>
<list-item><p><italic>In silico</italic> evaluation: assessment of predicted impact using integrated tools (e.g., REVEL, SpliceAI).</p></list-item>
</list>
<p>Although Franklin provided automated preliminary classification, each variant was manually reviewed, and classified by medical geneticists at the Department of Genetics and Molecular Medicine, LUHS, according to ACMG, ACGS, and ClinGen guidelines. Manual curation included evaluation of segregation data (when available), reported clinical phenotypes, literature review, published functional data, and comparison with clinical databases entries.</p>
</sec>
</sec>
<sec>
<title>Statistical analysis</title>
<p>Data were analyzed using IBM SPSS Statistics software, version 30.0.0. Continuous variables are presented as median values with minimum and maximum in parentheses, unless otherwise specified. Categorical variables are expressed as counts and percentages. The distribution of continuous variables was assessed using the Shapiro&#x02013;Wilk test. Since most variables were not normally distributed, comparisons between two independent groups were performed using the Mann&#x02013;Whitney <italic>U</italic>-test. Categorical variables were compared using the Chi-square test or Fisher&#x00027;s exact test when expected cell counts were &#x0003C; 5. A two-tailed <italic>p</italic>-value &#x0003C; 0.05 was considered statistically significant.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>General characteristics of the cohort</title>
<p>Seventy-eight (15.3%) individuals out of 509 were confirmed to have MD diagnosis after genetic testing. Forty-seven (60.3%) were females. General characteristics of the cohort are presented in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>General characteristics of the cohort with confirmed MD diagnosis.</p></caption>
<table frame="box" rules="all">
<tbody>
<tr style="background-color:#dee1e1;">
<td valign="top" align="left" colspan="2"><bold>General characteristic (Median (Min;Max))</bold></td>
</tr>
<tr>
<td valign="top" align="left">Age at MD diagnosis (years)</td>
<td valign="top" align="center">18.3 (4; 68.1)</td>
</tr>
<tr>
<td valign="top" align="left">&#x0003C; 25 years of age at MD diagnosis [<italic>N</italic> (%)]</td>
<td valign="top" align="center">43 (55.1%)</td>
</tr>
<tr>
<td valign="top" align="left">Hyperglycemia/diabetes duration until molecular diagnosis (years)</td>
<td valign="top" align="center">4.5 (0; 50)</td>
</tr>
<tr>
<td valign="top" align="left">Diabetes duration in subgroup &#x0003C; 25 years (years)</td>
<td valign="top" align="center">1 (0;14)</td>
</tr>
<tr>
<td valign="top" align="left">Diabetes duration in subgroup &#x02265;25 years (years)</td>
<td valign="top" align="center">6 (0;50)</td>
</tr>
<tr style="background-color:#dee1e1;">
<td valign="top" align="left" colspan="2"><bold>Autoimmunity status [</bold><italic><bold>N</bold></italic> <bold>(%)]</bold></td>
</tr>
<tr>
<td valign="top" align="left">Negative GAD</td>
<td valign="top" align="center">77 (98.7%)<sup>&#x0002A;</sup></td>
</tr>
<tr>
<td valign="top" align="left">Negative IA2</td>
<td valign="top" align="center">78 (100%)</td>
</tr>
<tr>
<td valign="top" align="left">Negative IAA</td>
<td valign="top" align="center">75 (96.2%)<sup>&#x0002A;&#x0002A;</sup></td>
</tr>
<tr>
<td valign="top" align="left">Positive family history (relative with diabetes in first-line or multiple cases in three generations)</td>
<td valign="top" align="center">30 (38.5%)</td>
</tr></tbody>
</table>
<table-wrap-foot>
<p>MD, monogenic diabetes; GAD, Glutamic acid decarboxylase; IA2, tyrosine phosphatase; IAA, insulin autoantibodies. <sup>&#x0002A;</sup>One patient with positive GAD antibodies was included in genetic testing because of strong clinical suspicion of MD (daughter was diagnosed with <italic>HNF4A</italic> MODY). <sup>&#x0002A;&#x0002A;</sup>Three patients tested positive for IAA after introduction of exogenous insulin.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Genetic data&#x02014;confirmed MD diagnosis</title>
<p>Overall, 78.2% (61/78) of patients were diagnosed with <italic>GCK</italic> mutation, causing stable hyperglycemia, 14.1% (11/78) had <italic>HNF1A</italic> diabetes, 3.8% (3/78)&#x02014;<italic>HNF4A</italic>, and 3.8% (3/78)&#x02014;<italic>HNF1B</italic>. The frequencies of affected gene by patients&#x00027; age group (under 25 or &#x02265;25 years of age) are presented in <xref ref-type="table" rid="T2">Table 2</xref>. The distribution of MD genes did not differ significantly between the two age groups (&#x003C7;<sup>2</sup> = 1.13, <italic>p</italic> = 0.77).</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>The frequencies of affected gene by age subgroups.</p></caption>
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496;color:#ffffff">
<th valign="top" align="left"><bold>Affected gene</bold></th>
<th valign="top" align="center" colspan="2"><bold>Age group</bold></th>
</tr>
<tr style="background-color:#8f9496;color:#ffffff">
<th/>
<th valign="top" align="center">&#x0003C;<bold>25 years of age (</bold><italic><bold>n</bold></italic> = <bold>43)</bold></th>
<th valign="top" align="center">&#x02265;<bold>25 years of age (</bold><italic><bold>n</bold></italic> = <bold>35)</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>GCK</italic></td>
<td valign="top" align="center">35 (81.4%)</td>
<td valign="top" align="center">26 (74.3%)</td>
</tr>
<tr>
<td valign="top" align="left"><italic>HNF1A</italic></td>
<td valign="top" align="center">5 (11.6%)</td>
<td valign="top" align="center">6 (17.1%)</td>
</tr>
<tr>
<td valign="top" align="left"><italic>HNF4A</italic></td>
<td valign="top" align="center">1 (2.3%)</td>
<td valign="top" align="center">2 (5.7%)</td>
</tr>
<tr>
<td valign="top" align="left"><italic>HNF1B</italic></td>
<td valign="top" align="center">2 (4.7%)</td>
<td valign="top" align="center">1 (2.9%)</td>
</tr></tbody>
</table>
</table-wrap>
</sec>
<sec>
<title>Novel variants</title>
<p>Nine patient out of 78 (11.5%) were identified with novel variants in MODY genes. Three novel variants were detected in the <italic>GCK</italic> gene, of which 2 were familial diabetes. One novel variant was identified in <italic>HNF4A</italic> gene, referred as familial case. A single novel variant was found in two siblings in the <italic>HNF1B</italic> gene, referred due to a family history of renal anomalies. Additionally, two novel variants were detected in <italic>HNF1A</italic> gene. A more detailed overview of all novel variants is provided in <xref ref-type="table" rid="T3">Table 3</xref>.</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Description of novel variants.</p></caption>
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496;color:#ffffff">
<th valign="top" align="left"><bold>Gender</bold></th>
<th valign="top" align="left"><bold>Age at MD diagnosis (years)</bold></th>
<th valign="top" align="left"><bold>Affected gene</bold></th>
<th valign="top" align="left"><bold>Variant</bold></th>
<th valign="top" align="left"><bold>Protein change</bold></th>
<th valign="top" align="left"><bold>Zygosity</bold></th>
<th valign="top" align="left"><bold>Testing technique</bold></th>
<th valign="top" align="left"><bold>ACMG variant classification criteria</bold></th>
<th valign="top" align="left"><bold>Classification</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">f</td>
<td valign="top" align="left">57,6</td>
<td valign="top" align="left"><italic>HNF4A</italic></td>
<td valign="top" align="left">c.704G&#x0003E;T</td>
<td valign="top" align="left">p.Arg235Ile</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td valign="top" align="left">PM2_supporting, PP3, PM1_supporting, PP1_strong, PP4_moderate</td>
<td valign="top" align="left">Likely pathogenic</td>
</tr>
<tr>
<td valign="top" align="left">m<sup>&#x0002A;</sup></td>
<td valign="top" align="left">9,1</td>
<td valign="top" align="left"><italic>GCK</italic></td>
<td valign="top" align="left">c.1266del</td>
<td valign="top" align="left">p.Phe423SerfsTer8</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">NGS</td>
<td valign="top" align="left">PVS1, PM2_supporting, PP4_moderate, PS2_moderate</td>
<td valign="top" align="left">Pathogenic</td>
</tr>
<tr>
<td valign="top" align="left">f<sup>&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">19,5</td>
<td valign="top" align="left"><italic>GCK</italic></td>
<td valign="top" align="left">c.471_473delAGA</td>
<td valign="top" align="left">p.Glu157del</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td valign="top" align="left">PM2_supporting, PM4_supporting, PP3, PS1_supporting, PP4_moderate</td>
<td valign="top" align="left">Likely pathogenic</td>
</tr>
<tr>
<td valign="top" align="left">m<sup>&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">52</td>
<td valign="top" align="left"><italic>GCK</italic></td>
<td valign="top" align="left">c.471_473delAGA</td>
<td valign="top" align="left">p.Glu157del</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">m</td>
<td valign="top" align="left">48,7</td>
<td valign="top" align="left"><italic>GCK</italic></td>
<td valign="top" align="left">c.513C&#x0003E;A</td>
<td valign="top" align="left">p.Phe171Leu</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td valign="top" align="left">PM2_supporting, PM5_supporting, PP2, PP3, PP4_moderate</td>
<td valign="top" align="left">Likely pathogenic</td>
</tr>
<tr>
<td valign="top" align="left">f<sup>&#x0002A;&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">12,8</td>
<td valign="top" align="left"><italic>HNF1B</italic></td>
<td valign="top" align="left">c.701dupA</td>
<td valign="top" align="left">p.Asn234LysfsTer60</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td valign="top" align="left">PVS1, PM2_supporting, PP1, PP4</td>
<td valign="top" align="left">Likely pathogenic</td>
</tr>
<tr>
<td valign="top" align="left">m<sup>&#x0002A;&#x0002A;&#x0002A;</sup></td>
<td valign="top" align="left">6,11</td>
<td valign="top" align="left"><italic>HNF1B</italic></td>
<td valign="top" align="left">c.701dupA</td>
<td valign="top" align="left">p.Asn234LysfsTer60</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">NGS</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">f</td>
<td valign="top" align="left">16</td>
<td valign="top" align="left"><italic>HNF1A</italic></td>
<td valign="top" align="left">c.809A&#x0003E;C</td>
<td valign="top" align="left">p.Asn270Thr</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td valign="top" align="left">PM2_supporting, PM1, PP3, PP1, PP4_moderate</td>
<td valign="top" align="left">Likely pathogenic</td>
</tr>
<tr>
<td valign="top" align="left">f</td>
<td valign="top" align="left">47,9</td>
<td valign="top" align="left"><italic>HNF1A</italic></td>
<td valign="top" align="left">c.1763_1781insACCGGCTCAGCCCCAGCCC</td>
<td valign="top" align="left">p.Thr589Profs<sup>&#x0002A;</sup>66</td>
<td valign="top" align="left">Het</td>
<td valign="top" align="left">Sanger seq</td>
<td valign="top" align="left">PVS1, PM2_supporting, PP4</td>
<td valign="top" align="left">Likely pathogenic</td>
</tr></tbody>
</table>
<table-wrap-foot>
<p>f, female; m, male; Het, heterozygous, seq, sequencing; NGS, next-generation sequencing.</p>
<p><sup>&#x0002A;</sup>Male patient with <italic>GCK</italic> variant c.1266del, negative autoimmune markers, though requiring insulin injections for the treatment to reach stable glycemias, described below.</p>
<p><sup>&#x0002A;&#x0002A;</sup>Daughter and father.</p>
<p><sup>&#x0002A;&#x0002A;&#x0002A;</sup>Siblings.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>The molecular diagnosis and treatment adjustment</title>
<p>Seventeen (22.1%) patients had successful treatment optimization to therapy aligned with the genetic etiology. Ten of them were patients with <italic>GCK</italic> diabetes: 4 discontinued insulin injections after the diagnosis, 5&#x02014;discontinued Metformin, 1&#x02014;discontinued Gliclazide. One patient (9 years old boy) with novel <italic>GCK</italic> variant continued with insulin treatment, after several unsuccessful attempts, though all pancreatic antibodies were negative, and C-peptide was normal. Seven patient with <italic>HNF1A</italic> diabetes were successfully switched to sulfonylurea agents: 5 from insulin, 2&#x02014;from Metformin. Four patients with <italic>HNF1A</italic> diabetes stayed with insulin treatment, because unresponsive to sulfonylurea treatment. <italic>HNF1B</italic> patients did not require any treatment before or after molecular diagnosis. Two patients with <italic>HNF4A</italic> continued insulin therapy, and a one patient did not require any treatment. Treatment optimization according to affected gene is presented in <xref ref-type="table" rid="T4">Table 4</xref>.</p>
<table-wrap position="float" id="T4">
<label>Table 4</label>
<caption><p>Treatment adjustment according to affected gene in monogenic diabetes patients.</p></caption>
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496;color:#ffffff">
<th valign="top" align="left"><bold>Affected gene</bold></th>
<th valign="top" align="center"><bold>Treatment was appropriate (<italic>N</italic>)</bold></th>
<th valign="top" align="center"><bold>Changed to first-line therapy (<italic>N</italic>)</bold></th>
<th valign="top" align="center"><bold>Unsuccessful treatment optimization (<italic>N</italic>)</bold></th>
<th valign="top" align="center"><bold>Total patients (<italic>N</italic>)</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>GCK</italic></td>
<td valign="top" align="center">50</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">61</td>
</tr>
<tr>
<td valign="top" align="left"><italic>HNF1A</italic></td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td valign="top" align="left"><italic>HNF4A</italic></td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td valign="top" align="left"><italic>HNF1B</italic></td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">3</td>
</tr>
<tr>
<td valign="top" align="left">Total</td>
<td valign="top" align="center">54</td>
<td valign="top" align="center">18</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">78</td>
</tr></tbody>
</table>
</table-wrap>
</sec>
<sec>
<title>Clinical factors associated with the persistence of non-first-line therapy</title>
<p>Main clinical characteristics of seven patients with <italic>HNF1A</italic> diabetes and successful treatment optimization were compared to 6 patients (4 <italic>HNF1A</italic> and 2 <italic>HNF4A</italic>) with sustained non-first-line treatment (all with insulin injections), comparison is presented in <xref ref-type="table" rid="T5">Table 5</xref>.</p>
<table-wrap position="float" id="T5">
<label>Table 5</label>
<caption><p>Comparison between optimized and sustained treatment group in <italic>HNF1A</italic> and <italic>HNF4A</italic> patients.</p></caption>
<table frame="box" rules="all">
<thead>
<tr style="background-color:#8f9496;color:#ffffff">
<th valign="top" align="left"><bold>Variable</bold></th>
<th valign="top" align="left"><bold>Optimized treatment (<italic>n</italic> = 7)</bold></th>
<th valign="top" align="left"><bold>Sustained non-first-line treatment (<italic>n</italic> = 6)</bold></th>
<th valign="top" align="left"><bold><italic>p</italic>-value</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Age at MD diagnosis (years)</td>
<td valign="top" align="left">16 (12.5; 56.3)</td>
<td valign="top" align="left">46 (23.8; 65.3)</td>
<td valign="top" align="left">0.073</td>
</tr>
<tr>
<td valign="top" align="left">Diabetes duration until MD diagnosis (years)</td>
<td valign="top" align="left">4 (0.1; 25)</td>
<td valign="top" align="left">21.5 (0.1; 50)</td>
<td valign="top" align="left">0.197</td>
</tr>
<tr>
<td valign="top" align="left">C-peptide at MD diagnosis<sup>&#x0002A;</sup> (nmol/L)</td>
<td valign="top" align="left">0.48 (0.21; 1.04)</td>
<td valign="top" align="left">0.35 (0.23; 1)</td>
<td valign="top" align="left">0.537</td>
</tr></tbody>
</table>
<table-wrap-foot>
<p>MD, monogenic diabetes.</p>
<p><sup>&#x0002A;</sup>Fasting C-peptide normal range 0.23-0.81 nmol/L.</p>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>A key strength of our study is real data from a national diabetes reference center and the inclusion of MD cases across all age groups, extending beyond the younger cohorts. We believe these findings may encourage greater attention to the genetic investigation of patients well into their 30s, 40s, and even 50s.</p>
<p>The frequency of <italic>GCK, HNF1A, HNF1B</italic>, and <italic>HNF4A</italic> variants were comparable in patients &#x0003C; 25 years and &#x02265;25 years in our study, underscoring the importance of considering MD screening across all age groups. In pediatric cohorts, GCK-MODY typically predominates. For example, an Italian multicenter study of 172 families reported that &#x0007E;80% of cases were due to <italic>GCK</italic> mutations, with relatively few <italic>HNF1A</italic> diabetes (<xref ref-type="bibr" rid="B5">5</xref>). Similarly, targeted sequencing in UK pediatric and young adult populations has confirmed that <italic>GCK</italic> and <italic>HNF1A</italic> together account for most MD cases (<xref ref-type="bibr" rid="B6">6</xref>). Studies of broader age spectrum cohorts also indicate that <italic>GCK, HNF1A</italic>, and <italic>HNF4A</italic> together account for at least 85% of MODY cases (<xref ref-type="bibr" rid="B7">7</xref>). Importantly, the penetrance of <italic>HNF1A</italic> is strongly age-dependent, with diabetes present in &#x0007E;63% of carriers by age 25, &#x0007E;94% by age 50, and &#x0007E;99% by age 75 (<xref ref-type="bibr" rid="B8">8</xref>). Furthermore, population-based analyses suggest that HNF1A-MODY represents up to 70% of European cases, with the majority of affected individuals manifesting before the age of 25 (<xref ref-type="bibr" rid="B9">9</xref>). Taken together, these findings are consistent with our observation reinforcing the importance of offering MD genetic testing beyond pediatric and young adults&#x00027; settings.</p>
<p>MD is frequently misdiagnosed, with many patients initially classified as having type 1 or type 2 diabetes due to overlapping clinical features and limitations of standard diagnostic algorithms, especially in patients over 25 years of age (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>). It is estimated that up to 80% of MODY cases are not correctly identified, resulting in significant diagnostic delays that often exceed a decade from the onset of hyperglycemia to the confirmation of a molecular diagnosis (<xref ref-type="bibr" rid="B10">10</xref>). Studies demonstrate that the time between the initial manifestation of hyperglycemia and genetic confirmation is prolonged, leading to extended periods of inappropriate management and missed opportunities for pathogenetically targeted therapy (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B11">11</xref>&#x02013;<xref ref-type="bibr" rid="B13">13</xref>). In our cohort, although the diagnostic interval was shorter than previously reported, with a mean duration of approximately up to 5 years from the initial diabetes diagnosis to genetic confirmation, substantial delays were still observed in some cases.</p>
<p>Delayed diagnosis in MD, particularly in <italic>HNF1A</italic> and <italic>HNF4A</italic>, compromises the efficacy of targeted treatments. Prolonged exposure to hyperglycemia accelerates &#x003B2;-cell failure through glucotoxicity, resulting in reduced endogenous insulin secretion (<xref ref-type="bibr" rid="B14">14</xref>, <xref ref-type="bibr" rid="B15">15</xref>). Patients with <italic>HNF1A</italic> diabetes and longstanding diabetes exceeding a decade rarely achieve optimal glycemic targets [HbA1c &#x0003C; 7.5% (58 mmol/mol)] after initiating sulfonylurea monotherapy, in contrast to those diagnosed earlier who demonstrate success rates above 80% (<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B14">14</xref>). Diminishing &#x003B2;-cell function over time also necessitates adjunctive therapies despite genetically appropriate treatment. Importantly, early commencement of sulfonylureas has been associated with improved metabolic outcomes, greater preservation of insulin secretory capacity, and delayed onset of diabetes-related complications (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B15">15</xref>). These findings emphasize that the therapeutic window for effective sulfonylurea monotherapy narrows considerably as diagnostic delays increase, highlighting the critical importance of early genetic identification in optimizing long-term management. A similar pattern was identified in our cohort, where individuals with a longer duration of diabetes demonstrated a reduced likelihood of achieving successful transition to sulfonylurea monotherapy, though we did not find statistical significance, likely influenced by the small sample sizes, limiting the study&#x00027;s statistical power.</p>
<p>The main limitation of our study is that comprehensive genetic testing, such as WES was not systematically performed in all patients. Instead, molecular diagnosis was largely based on targeted gene analysis, which may have led to an underestimation of the prevalence of rarer or atypical forms of MD. This approach also carries the risk of missing pathogenic variants in genes not included in the targeted panel, as well as non-coding or structural variants detectable only by broader sequencing methods. Consequently, the genetic spectrum described in our cohort may not fully capture the heterogeneity of MD. Future studies employing exome or genome sequencing across entire cohorts are warranted to provide a more complete picture of the underlying genetic architecture and to refine genotype&#x02013;phenotype correlations.</p>
<p>The other limitaion is that this study identified several novel variants, however, no experimental functional studies (e.g., <italic>in vitro</italic> assays, splicing analysis, or protein function experiments) were performed to confirm their pathogenicity. This represents a limitation, as <italic>in silico</italic> prediction tools alone have restricted accuracy. However, segregation analysis was performed in families where additional samples were available, and segregation results contributed supporting evidence for variant interpretation. Final classification was based on a combination of ACMG/ACGS/ClinGen criteria, variant type, population frequency, predicted functional effect, and the consistency between the genotype and the patient&#x00027;s clinical phenotype. Nevertheless, we acknowledge that future studies including functional assays will be essential to strengthen the evidence for pathogenicity, particularly for the novel variants reported here.</p>
<p>Traditional screening criteria for MD&#x02014;based on diagnosis before the age of 25 years, a non-obese phenotype, and a strong family history&#x02014;have been widely applied increasingly recognized as overly restrictive (<xref ref-type="bibr" rid="B10">10</xref>, <xref ref-type="bibr" rid="B16">16</xref>). Recent studies show that a substantial proportion of MD cases are diagnosed beyond the classical age threshold. In a Chinese cohort, 72.2% of patients with genetically confirmed MD were diagnosed after the age of 35, and only 38.9% had a family history of diabetes, highlighting the limitations of traditional screening criteria (<xref ref-type="bibr" rid="B17">17</xref>). Furthermore, a 2023 systematic review by Murphy et al. found that relying on the conventional age cutoff (&#x0003C; 25 years with family history) would miss about 63% of actual MD cases (<xref ref-type="bibr" rid="B16">16</xref>). These findings underscore the necessity to broaden current diagnostic criteria, extending genetic testing to adults diagnosed after the age of 25 who present with atypical diabetes features. Such an approach would facilitate earlier detection of MD and the timely implementation of pathogenetically appropriate therapies, thereby optimizing long-term clinical outcomes.</p>
<p>Finally, our data emphasize that accurate differentiation of MD from other more common types of diabetes is clinically essential, as it directly influences treatment decisions, long-term outcomes, and healthcare costs. In contrast to polygenic forms of diabetes, specific MD types have well established, gene-specific strategies. Misclassification of diabetes may lead to unnecessary or inappropriate treatment, including lifelong insulin therapy, increased risk of hypoglycemia, psychological burden, and avoidable healthcare costs. In this context, genetic testing&#x02014;when applied to carefully selected patients&#x02014;is cost-effective, as it enables precise diagnosis, optimization of therapy, and prevention of long-term complications related to overtreatment (<xref ref-type="bibr" rid="B2">2</xref>, <xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B19">19</xref>). Furthermore, it facilitates cascade screening of family members, allows early identification of affected relatives. Therefore, timely and accurate identification of MD is a key component of precision medicine in diabetes care, improving both individual patient management and broader family-based risk assessment.</p></sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusion</title>
<p>Diagnostic delays in MD remain common, contributing to extended periods of non-optimized management. Our findings underscore the clinical value of genetic testing for MD across all age groups and support its role in guiding individualized, evidence-based treatment strategies.</p></sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec sec-type="ethics-statement" id="s7">
<title>Ethics statement</title>
<p>The studies involving humans were approved by Kaunas Regional Biomedical Research Ethics Committee (No. BE-2-5 and BE-2-51). The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent for participation in this study was provided by the participants&#x00027; legal guardians/next of kin.</p>
</sec>
<sec sec-type="author-contributions" id="s8">
<title>Author contributions</title>
<p>IS: Conceptualization, Data curation, Formal analysis, Investigation, Writing &#x02013; original draft. AC: Data curation, Formal analysis, Writing &#x02013; original draft. GL: Data curation, Writing &#x02013; original draft. MS: Data curation, Formal analysis, Investigation, Methodology, Writing &#x02013; original draft. KA: Data curation, Formal analysis, Investigation, Methodology, Writing &#x02013; original draft. RU: Formal analysis, Investigation, Methodology, Supervision, Writing &#x02013; review &#x00026; editing. RV: Conceptualization, Supervision, Writing &#x02013; review &#x00026; editing.</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s10">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was not used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p></sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
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