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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Med.</journal-id>
<journal-title>Frontiers in Medicine</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Med.</abbrev-journal-title>
<issn pub-type="epub">2296-858X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmed.2017.00187</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Medicine</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Changes in Expression of the <italic>CLOCK</italic> Gene in Obstructive Sleep Apnea Syndrome Patients Are Not Reverted by Continuous Positive Airway Pressure Treatment</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Moreira</surname> <given-names>Susana</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Rodrigues</surname> <given-names>Raquel</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x02021;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Barros</surname> <given-names>Andr&#x000E9; B.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Pejanovic</surname> <given-names>Nadja</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Neves-Costa</surname> <given-names>Ana</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Pedroso</surname> <given-names>Dora</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Pereira</surname> <given-names>Cl&#x000E1;udia</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Fernandes</surname> <given-names>Dina</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Rodrigues</surname> <given-names>Jo&#x000E3;o Valen&#x000E7;a</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Barbara</surname> <given-names>Cristina</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Moita</surname> <given-names>Lu&#x000ED;s Ferreira</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="cor1">&#x0002A;</xref>
<uri xlink:href="http://frontiersin.org/people/u/335918"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Departamento de Pneumologia, Centro Hospitalar Lisboa Norte, EPE</institution>, <addr-line>Lisboa</addr-line>, <country>Portugal</country></aff>
<aff id="aff2"><sup>2</sup><institution>Instituto Gulbenkian de Ci&#x000EA;ncia</institution>, <addr-line>Oeiras</addr-line>, <country>Portugal</country></aff>
<aff id="aff3"><sup>3</sup><institution>Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa</institution>, <addr-line>Lisboa</addr-line>, <country>Portugal</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Rapha&#x000EB;l Heinzer, Centre Hospitalier Universitaire Vaudois (CHUV), Switzerland</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Jos&#x000E9; Haba-Rubio, Centre Hospitalier Universitaire Vaudois (CHUV), Switzerland; Timo Partonen, National Institute for Health and Welfare, Finland</p></fn>
<corresp content-type="corresp" id="cor1">&#x0002A;Correspondence: Lu&#x000ED;s Ferreira Moita, <email>lmoita&#x00040;igc.gulbenkian.pt</email></corresp>
<fn fn-type="present-address" id="fn001"><p><sup>&#x02020;</sup>These authors have contributed equally to this work.</p></fn>
<fn fn-type="present-address" id="fn002"><p><sup>&#x02021;</sup>Present address: Raquel Rodrigues, Hospital de Santa Maria, Departamento de Pediatria, Servi&#x000E7;o de Gen&#x000E9;tica M&#x000E9;dica, Lisboa, Portugal</p></fn>
<fn fn-type="other" id="fn003"><p>Specialty section: This article was submitted to Pulmonary Medicine, a section of the journal Frontiers in Medicine</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>11</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>187</elocation-id>
<history>
<date date-type="received">
<day>02</day>
<month>06</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>16</day>
<month>10</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Moreira, Rodrigues, Barros, Pejanovic, Neves-Costa, Pedroso, Pereira, Fernandes, Rodrigues, Barbara and Moita.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Moreira, Rodrigues, Barros, Pejanovic, Neves-Costa, Pedroso, Pereira, Fernandes, Rodrigues, Barbara and Moita</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract abstract-type="executive-summary">
<sec id="ST1">
<title>Purpose</title>
<p>Metabolic syndrome and cardiovascular disease are strongly associated with obstructive sleep apnea syndrome (OSAS), which causes substantial changes to normal circadian physiological functions, including metabolic pathways. Because core clock genes are known to be modulated by sleep/vigilance cycles, we asked whether the expression level of mRNA coding for clock genes is altered in non-treated OSAS patients and if it can be corrected by standard continuous positive airway pressure (CPAP) treatment.</p>
</sec>
<sec id="ST2">
<title>Methods</title>
<p>Peripheral blood was collected from male patients diagnosed with severe OSAS (apnea-hypopnea index&#x02009;&#x02265;&#x02009;30/h) before and after treatment initiation. qPCR was used to measure mRNA levels of genes associated with the central circadian pacemaker including <italic>CLOCK, BMAL1, Cry1, Cry2</italic>, and three <italic>Period</italic> genes (<italic>Per 1, 2, 3</italic>) in peripheral blood mononuclear cells (PBMCs).</p>
</sec>
<sec id="ST3">
<title>Results</title>
<p>We found statistically significant differences for <italic>CLOCK</italic> (<italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.022) expression in PBMCs of OSAS patients which were not reverted by treatment with CPAP. We have also found a substantial decrease in the slow wave sleep (SWS) content in OSAS patients (<italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.001) that, contrary to REM sleep, was not corrected by CPAP (<italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.875).</p>
</sec>
<sec id="ST4">
<title>Conclusion</title>
<p>CPAP treatment does not correct substantial changes in expression of core clock genes in OSAS patients. Because CPAP treatment is also unable to normalize the SWS in these patients, it is likely that additional therapeutic interventions that increase SWS content and complement the benefits of CPAP are required to more effectively reduce the known increased cardiovascular risk associated with OSAS patients.</p>
</sec>
</abstract>
<kwd-group>
<kwd>obstructive sleep apnea syndrome</kwd>
<kwd>clock genes</kwd>
<kwd>continuous positive airway pressure</kwd>
<kwd>slow wave sleep</kwd>
<kwd>Metabolic Syndrome</kwd>
<kwd>Circadian Rhythms</kwd>
</kwd-group>
<contract-num rid="cn01">PIC/IC/82991/2007</contract-num>
<contract-sponsor id="cn01">Funda&#x000E7;&#x000E3;o para a Ci&#x000EA;ncia e a Tecnologia<named-content content-type="fundref-id">10.13039/501100001871</named-content></contract-sponsor>
<counts>
<fig-count count="0"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="15"/>
<page-count count="5"/>
<word-count count="3258"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="introduction">
<title>Introduction</title>
<p>The obstructive sleep apnea syndrome (OSAS) is a frequent sleep disorder that constitutes an independent risk factor for the development of metabolic syndrome and cardiovascular disease (<xref ref-type="bibr" rid="B1">1</xref>). Most of the gene components of critical metabolic pathways and their regulators exhibit circadian variation at the mRNA and protein levels (<xref ref-type="bibr" rid="B2">2</xref>). They are regulated by core clock genes, which in turn are modulated by sleep/vigilance cycles (<xref ref-type="bibr" rid="B3">3</xref>). Importantly, single genetic disruption of the core clock genes <italic>CLOCK</italic> (<xref ref-type="bibr" rid="B4">4</xref>) and <italic>BMAL1</italic> (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B6">6</xref>) cause full-blown metabolic syndrome phenotypes in mice. Milder metabolic syndrome phenotypes have also been observed in double or triple, but not single, inactivation of additional core clock genes, including <italic>Per1, 2, 3</italic>, and <italic>Cry1 and 2</italic> (<xref ref-type="bibr" rid="B7">7</xref>). In this work, we investigated whether the expression level of mRNA coding for clock genes is altered in non-treated OSAS patients and if it can be corrected by continuous positive airway pressure (CPAP) treatment.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2-1">
<title>Study Population</title>
<p>Using polysomnography (Alice 5, Respironics, Inc., Murrysville, PA, USA) scored according to the 2007 AASM manual for the scoring of sleep and associated events and stringent clinical criteria (patients with addiction habits, cancer, hematological disorders, active infection, or shift work were excluded), we have identified a group of 13 male patients with severe OSAS [average apnea-hypopnea index (AHI) of 66.7/h, all&#x02009;&#x02265;&#x02009;30/h] and 7 matched controls for sex (average AHI of 2, all&#x02009;&#x0003C;&#x02009;5/h). Patients and controls, without the exclusion criteria, were recruited at the sleep consultation of Santa Maria Hospital (Lisbon, Portugal), from those with a high degree of suspicion to have Sleep Apnea, based on their clinical history. Patients and controls were distinguished on the basis of the PSG results. Sleepiness was evaluated using the Stanford Sleepiness Scale and the Epworth Sleepiness Scale (ESS). See Table <xref ref-type="table" rid="T1">1</xref> for sleep study results in the healthy and OSAS group. Cortisol levels were within normal limits for all subjects (data not shown). For a subset of patients, PSG was repeated after treatment with CPAP to assess its impact on REM and slow wave sleep (SWS) content. This study was approved by the Ethics Committee Review Board of Centro Hospitalar Lisboa Norte, EPE (Lisboa, Portugal), and written consent obtained for every patient and control sample included in this study.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Polysomnography characterization of healthy controls and obstructive sleep apnea syndrome patients, before continuous positive airway pressure treatment.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center" colspan="4">Control group</th>
<th valign="top" align="center" colspan="4">Patient group</th>
</tr>
<tr>
<th valign="top" align="center" colspan="9"><hr/></th>
</tr>
<tr>
<th valign="top" align="left"><italic>N</italic></th>
<th valign="top" align="center" colspan="4">7<hr/></th>
<th valign="top" align="center" colspan="4">13<hr/></th>
</tr>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">1st Quartile</th>
<th valign="top" align="center">Median</th>
<th valign="top" align="center">Mean</th>
<th valign="top" align="center">3rd Quartile</th>
<th valign="top" align="center">1st Quartile</th>
<th valign="top" align="center">Median</th>
<th valign="top" align="center">Mean</th>
<th valign="top" align="center">3rd Quartile</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Age (years)</td>
<td align="center" valign="top">35.50</td>
<td align="center" valign="top">40.00</td>
<td align="center" valign="top">44.57</td>
<td align="center" valign="top">54.50</td>
<td align="center" valign="top">46.00</td>
<td align="center" valign="top">51.00</td>
<td align="center" valign="top">49.46</td>
<td align="center" valign="top">54.00</td>
</tr>
<tr>
<td align="left" valign="top">Oxygen desaturation index</td>
<td align="center" valign="top">0.10</td>
<td align="center" valign="top">0.30</td>
<td align="center" valign="top">1.16</td>
<td align="center" valign="top">1.60</td>
<td align="center" valign="top">40.60</td>
<td align="center" valign="top">59.70</td>
<td align="center" valign="top">57.92</td>
<td align="center" valign="top">71.40</td>
</tr>
<tr>
<td align="left" valign="top">Time spent with SpO<sub>2</sub>&#x02009;&#x0003C;&#x02009;90%, (min)</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">0.21</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">17.80</td>
<td align="center" valign="top">84.40</td>
<td align="center" valign="top">103.10</td>
<td align="center" valign="top">146.00</td>
</tr>
<tr>
<td align="left" valign="top">Lowest SpO<sub>2</sub> (%)</td>
<td align="center" valign="top">91.25</td>
<td align="center" valign="top">92.50</td>
<td align="center" valign="top">91.50</td>
<td align="center" valign="top">93.00</td>
<td align="center" valign="top">68.00</td>
<td align="center" valign="top">75.00</td>
<td align="center" valign="top">72.69</td>
<td align="center" valign="top">78.00</td>
</tr>
<tr>
<td align="left" valign="top">Mean SpO<sub>2</sub> (%)</td>
<td align="center" valign="top">96.00</td>
<td align="center" valign="top">96.00</td>
<td align="center" valign="top">96.00</td>
<td align="center" valign="top">96.00</td>
<td align="center" valign="top">91.00</td>
<td align="center" valign="top">91.00</td>
<td align="center" valign="top">91.23</td>
<td align="center" valign="top">93.00</td>
</tr>
<tr>
<td align="left" valign="top">ESS</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">2.00</td>
<td align="center" valign="top">2.60</td>
<td align="center" valign="top">3.00</td>
<td align="center" valign="top">9.00</td>
<td align="center" valign="top">12.00</td>
<td align="center" valign="top">11.45</td>
<td align="center" valign="top">15.00</td>
</tr>
<tr>
<td align="left" valign="top">Sleep efficiency (%)</td>
<td align="center" valign="top">76.70</td>
<td align="center" valign="top">90.00</td>
<td align="center" valign="top">84.69</td>
<td align="center" valign="top">94.30</td>
<td align="center" valign="top">72.72</td>
<td align="center" valign="top">82.60</td>
<td align="center" valign="top">80.34</td>
<td align="center" valign="top">88.92</td>
</tr>
<tr>
<td align="left" valign="top">Total sleep time (min)</td>
<td align="center" valign="top">366.40</td>
<td align="center" valign="top">377.20</td>
<td align="center" valign="top">368.70</td>
<td align="center" valign="top">389.20</td>
<td align="center" valign="top">295.80</td>
<td align="center" valign="top">353.20</td>
<td align="center" valign="top">350.00</td>
<td align="center" valign="top">399.50</td>
</tr>
<tr>
<td align="left" valign="top">REM (min)</td>
<td align="center" valign="top">40.12</td>
<td align="center" valign="top">60.25</td>
<td align="center" valign="top">58.48</td>
<td align="center" valign="top">76.62</td>
<td align="center" valign="top">3.65</td>
<td align="center" valign="top">8.45</td>
<td align="center" valign="top">9.40</td>
<td align="center" valign="top">15.62</td>
</tr>
<tr>
<td align="left" valign="top">Slow wave sleep (min)</td>
<td align="center" valign="top">53.50</td>
<td align="center" valign="top">58.25</td>
<td align="center" valign="top">58.75</td>
<td align="center" valign="top">75.38</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">1.55</td>
<td align="center" valign="top">3.86</td>
<td align="center" valign="top">4.63</td>
</tr>
<tr>
<td align="left" valign="top">Arousal index (events/h)</td>
<td align="center" valign="top">2.70</td>
<td align="center" valign="top">7.20</td>
<td align="center" valign="top">5.32</td>
<td align="center" valign="top">7.20</td>
<td align="center" valign="top">37.25</td>
<td align="center" valign="top">55.05</td>
<td align="center" valign="top">57.52</td>
<td align="center" valign="top">72.35</td>
</tr>
<tr>
<td align="left" valign="top">Apnea-hypopnea index (events/h)</td>
<td align="center" valign="top">0.85</td>
<td align="center" valign="top">1.50</td>
<td align="center" valign="top">2.00</td>
<td align="center" valign="top">3.05</td>
<td align="center" valign="top">41.50</td>
<td align="center" valign="top">67.10</td>
<td align="center" valign="top">61.88</td>
<td align="center" valign="top">78.40</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="S2-2">
<title>Measurement of Gene Expression</title>
<p>We have used quantitative RT-PCR to systematically quantify the expression of the core clock genes in peripheral blood cells of severe OSAS patients in comparison with that of matched non-affected control volunteers, before and after 1&#x02009;month of treatment with CPAP. Several studies have demonstrated that clock gene expression profiles in human peripheral blood mononuclear cells (PBMCs) can be used as surrogate measures of central circadian rhythm expression changes in patients and healthy subjects (<xref ref-type="bibr" rid="B8">8</xref>&#x02013;<xref ref-type="bibr" rid="B11">11</xref>). Therefore, peripheral blood was collected from the study subjects before and after 1&#x02009;month of treatment initiation. Collections were always performed between 8 and 10 a.m. Blood was then used to perform routine biochemical analyses (including cortisol levels) and to isolate PBMCs. The following hematologic and biochemical parameters were investigated in all participants: full peripheral blood cell count; hepatic enzymes (aspartate transaminase, alanine transaminase, and gamma-glutamyltransferase); renal parameters (creatinine, blood urea nitrogen); standard metabolic parameters (uric acid, glucose, total cholesterol, low density lipoprotein, high density lipoprotein, triglycerides, and C-reactive protein). RNA was isolated and quantitative RT-PCR used to measure mRNA levels of genes associated with the central circadian pacemaker including <italic>CLOCK, BMAL1</italic>, two <italic>Cry</italic> (<italic>Cry 1, 2</italic>), and three <italic>Period</italic> genes (<italic>Per 1, 2, 3</italic>). The selected patients were then evaluated 1&#x02009;month after therapy initiation with CPAP and the mRNA level of the same genes tested. The sequence of the oligos used for RT-PCR can be found Table S2 in the Supplementary Material.</p>
</sec>
<sec id="S2-3">
<title>Statistical Analysis</title>
<p>A non-parametric approach was chosen for the data analysis. We used median and quartiles for the descriptive statistical analysis. To test hypotheses related to differences between the control group and the patient group, we used the Wilcoxon signed-rank test. To investigate relationships between gene expression and other parameters, we implemented a correlation analysis based on Spearman&#x02019;s rank correlation coefficient.</p>
</sec>
</sec>
<sec id="S3">
<title>Results</title>
<p>Using Wilcoxon signed-rank test, we found statistically significant differences between patients and control volunteers in the ESS (<italic>W</italic>&#x02009;&#x0003D;&#x02009;51.5, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.007) and in polysomnography parameters (Table <xref ref-type="table" rid="T1">1</xref>) including in AHI (<italic>W</italic>&#x02009;&#x0003D;&#x02009;91, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.0001), oxygen desaturation index (<italic>W</italic>&#x02009;&#x0003D;&#x02009;91, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.001), SpO<sub>2</sub> time&#x02009;&#x0003C;&#x02009;90% in minutes (<italic>W</italic>&#x02009;&#x0003D;&#x02009;90, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.001), minimal SpO<sub>2</sub> (<italic>W</italic>&#x02009;&#x0003D;&#x02009;1, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.0001), and average SpO<sub>2</sub> (<italic>W</italic>&#x02009;&#x0003D;&#x02009;1.5, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.001). Statistically significant differences were also found for SWS in minutes (<italic>W</italic>&#x02009;&#x0003D;&#x02009;0, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.001), REM sleep in minutes (<italic>W</italic>&#x02009;&#x0003D;&#x02009;0, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.0001), and arousal index (<italic>W</italic>&#x02009;&#x0003D;&#x02009;60, <italic>p</italic>-value&#x02009;&#x0003C;&#x02009;0.002), but not for sleep efficiency (<italic>W</italic>&#x02009;&#x0003D;&#x02009;29.5, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.310) or total sleep time (<italic>W</italic>&#x02009;&#x0003D;&#x02009;34, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.892).</p>
<p>On the comparison between control volunteers and patients before treatment initiation, we found statistically significant differences for <italic>CLOCK</italic> (<italic>W</italic>&#x02009;&#x0003D;&#x02009;15, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.022) expression in PBMCs of patients, but not for <italic>Cry 1</italic> and <italic>2</italic> or the three <italic>Period</italic> genes tested (Table <xref ref-type="table" rid="T2">2</xref>). The differences of <italic>BMAL1</italic> expression between control volunteers and patients nearly reached statistical significance (<italic>W</italic>&#x02009;&#x0003D;&#x02009;20, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.068), an outcome that is likely, should the population size be larger.</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Characterization of the gene expression between the control group (C) and the patient group at t1 (P<sub>t1</sub>), as well as the results of hypothesis tests for comparison of gene expression between these groups.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center">Min</th>
<th valign="top" align="center">1st Quartile</th>
<th valign="top" align="center">Median</th>
<th valign="top" align="center">3rd Quartile</th>
<th valign="top" align="center">Max</th>
<th valign="top" align="center">Mean</th>
<th valign="top" align="center">SD</th>
<th valign="top" align="center">Hypothesis test</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" rowspan="2">BMAL1</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.54</td>
<td align="center" valign="top">0.72</td>
<td align="center" valign="top">0.81</td>
<td align="center" valign="top">1.27</td>
<td align="center" valign="top">5.01</td>
<td align="center" valign="top">1.26</td>
<td align="center" valign="top">1.22</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;20, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.068</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">0.91</td>
<td align="center" valign="top">1.09</td>
<td align="center" valign="top">1.38</td>
<td align="center" valign="top">1.95</td>
<td align="center" valign="top">2.27</td>
<td align="center" valign="top">1.52</td>
<td align="center" valign="top">0.54</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CLOCK</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.16</td>
<td align="center" valign="top">0.42</td>
<td align="center" valign="top">0.99</td>
<td align="center" valign="top">1.32</td>
<td align="center" valign="top">2.53</td>
<td align="center" valign="top">1.03</td>
<td align="center" valign="top">0.69</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;15, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.022</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">1.18</td>
<td align="center" valign="top">1.29</td>
<td align="center" valign="top">2.20</td>
<td align="center" valign="top">2.31</td>
<td align="center" valign="top">3.72</td>
<td align="center" valign="top">2.04</td>
<td align="center" valign="top">0.90</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CRY1</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.96</td>
<td align="center" valign="top">1.18</td>
<td align="center" valign="top">1.52</td>
<td align="center" valign="top">2.12</td>
<td align="center" valign="top">2.85</td>
<td align="center" valign="top">1.68</td>
<td align="center" valign="top">0.65</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;22, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.230</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">1.26</td>
<td align="center" valign="top">1.58</td>
<td align="center" valign="top">2.13</td>
<td align="center" valign="top">2.57</td>
<td align="center" valign="top">3.31</td>
<td align="center" valign="top">2.14</td>
<td align="center" valign="top">0.73</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CRY2</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.19</td>
<td align="center" valign="top">1.30</td>
<td align="center" valign="top">1.53</td>
<td align="center" valign="top">1.95</td>
<td align="center" valign="top">3.08</td>
<td align="center" valign="top">1.58</td>
<td align="center" valign="top">0.79</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;41, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.601</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">0.82</td>
<td align="center" valign="top">1.01</td>
<td align="center" valign="top">1.33</td>
<td align="center" valign="top">1.81</td>
<td align="center" valign="top">1.97</td>
<td align="center" valign="top">1.39</td>
<td align="center" valign="top">0.47</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">PER1</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.05</td>
<td align="center" valign="top">0.32</td>
<td align="center" valign="top">0.40</td>
<td align="center" valign="top">0.59</td>
<td align="center" valign="top">0.98</td>
<td align="center" valign="top">0.48</td>
<td align="center" valign="top">0.29</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;27, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.591</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">0.26</td>
<td align="center" valign="top">0.37</td>
<td align="center" valign="top">0.61</td>
<td align="center" valign="top">0.80</td>
<td align="center" valign="top">0.85</td>
<td align="center" valign="top">0.58</td>
<td align="center" valign="top">0.25</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">PER2</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.83</td>
<td align="center" valign="top">1.58</td>
<td align="center" valign="top">2.61</td>
<td align="center" valign="top">2.88</td>
<td align="center" valign="top">3.51</td>
<td align="center" valign="top">2.35</td>
<td align="center" valign="top">0.88</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;35, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.438</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">2.06</td>
<td align="center" valign="top">2.26</td>
<td align="center" valign="top">2.52</td>
<td align="center" valign="top">3.98</td>
<td align="center" valign="top">6.20</td>
<td align="center" valign="top">3.32</td>
<td align="center" valign="top">1.63</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">PER3</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">1.20</td>
<td align="center" valign="top">2.45</td>
<td align="center" valign="top">2.83</td>
<td align="center" valign="top">4.42</td>
<td align="center" valign="top">11.46</td>
<td align="center" valign="top">4.52</td>
<td align="center" valign="top">3.70</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;53, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.088</td>
</tr>
<tr>
<td align="center" valign="top">C</td>
<td align="center" valign="top">1.77</td>
<td align="center" valign="top">2.22</td>
<td align="center" valign="top">2.27</td>
<td align="center" valign="top">2.59</td>
<td align="center" valign="top">3.74</td>
<td align="center" valign="top">2.48</td>
<td align="center" valign="top">0.62</td>
</tr>
</tbody>
</table>
<table-wrap-foot><p><italic>Only the CLOCK gene showed statistically significant changes</italic>.</p>
</table-wrap-foot>
</table-wrap>
<p>Patient treatment with CPAP did not change abnormal expression of clock genes (Table <xref ref-type="table" rid="T3">3</xref>). It also did not improve the reduced levels of SWS observed in non-treated OSAS patients (<italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.875, Table <xref ref-type="table" rid="T4">4</xref>), contrary to REM sleep. The persistence of the abnormal expression pattern of the <italic>CLOCK</italic> gene cannot be attributed to the lack or sub-optimal adherence levels to CPAP treatment as demonstrated by the metrics of CPAP adherence of our patients (Table <xref ref-type="table" rid="T5">5</xref>; Table S1 in Supplementary Material). Our data show that adherence to CPAP treatment is well above the minimum required level recommended by the most recent proposal of the American Thoracic Society (<xref ref-type="bibr" rid="B12">12</xref>) that points to the need of CPAP use in more than 70% of nights and for more than 4&#x02009;h per night.</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Characterization of the gene expression within the patient group between the values recorded at t1 (P<sub>t1</sub>) and the ones recorded at t2 (P<sub>t2</sub>), as well as the results of hypothesis tests for comparison of gene expression between these time-points.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center">Min</th>
<th valign="top" align="center">1st Quartile</th>
<th valign="top" align="center">Median</th>
<th valign="top" align="center">3rd Quartile</th>
<th valign="top" align="center">Max</th>
<th valign="top" align="center">Mean</th>
<th valign="top" align="center">SD</th>
<th valign="top" align="center">Hypothesis test</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" rowspan="2">BMAL1</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.54</td>
<td align="center" valign="top">0.72</td>
<td align="center" valign="top">0.81</td>
<td align="center" valign="top">1.27</td>
<td align="center" valign="top">5.01</td>
<td align="center" valign="top">1.26</td>
<td align="center" valign="top">1.22</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;57, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.872</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">0.21</td>
<td align="center" valign="top">0.87</td>
<td align="center" valign="top">1.13</td>
<td align="center" valign="top">1.28</td>
<td align="center" valign="top">1.65</td>
<td align="center" valign="top">1.03</td>
<td align="center" valign="top">0.45</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CLOCK</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.16</td>
<td align="center" valign="top">0.42</td>
<td align="center" valign="top">0.99</td>
<td align="center" valign="top">1.32</td>
<td align="center" valign="top">2.53</td>
<td align="center" valign="top">1.03</td>
<td align="center" valign="top">0.69</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;58, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.923</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">0.14</td>
<td align="center" valign="top">0.87</td>
<td align="center" valign="top">0.98</td>
<td align="center" valign="top">1.20</td>
<td align="center" valign="top">1.95</td>
<td align="center" valign="top">1.07</td>
<td align="center" valign="top">0.54</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CRY1</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.96</td>
<td align="center" valign="top">1.18</td>
<td align="center" valign="top">1.52</td>
<td align="center" valign="top">2.12</td>
<td align="center" valign="top">2.85</td>
<td align="center" valign="top">1.68</td>
<td align="center" valign="top">0.65</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;32, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.813</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">0.85</td>
<td align="center" valign="top">1.20</td>
<td align="center" valign="top">1.55</td>
<td align="center" valign="top">2.38</td>
<td align="center" valign="top">3.86</td>
<td align="center" valign="top">1.92</td>
<td align="center" valign="top">1.06</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">CRY2</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.19</td>
<td align="center" valign="top">1.30</td>
<td align="center" valign="top">1.53</td>
<td align="center" valign="top">1.95</td>
<td align="center" valign="top">3.08</td>
<td align="center" valign="top">1.58</td>
<td align="center" valign="top">0.79</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;36, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.756</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">0.87</td>
<td align="center" valign="top">1.23</td>
<td align="center" valign="top">1.46</td>
<td align="center" valign="top">2.65</td>
<td align="center" valign="top">4.03</td>
<td align="center" valign="top">2.04</td>
<td align="center" valign="top">1.29</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">PER1</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.05</td>
<td align="center" valign="top">0.32</td>
<td align="center" valign="top">0.40</td>
<td align="center" valign="top">0.59</td>
<td align="center" valign="top">0.98</td>
<td align="center" valign="top">0.48</td>
<td align="center" valign="top">0.29</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;50, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;1.000</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">0.21</td>
<td align="center" valign="top">0.37</td>
<td align="center" valign="top">0.39</td>
<td align="center" valign="top">0.50</td>
<td align="center" valign="top">0.74</td>
<td align="center" valign="top">0.43</td>
<td align="center" valign="top">0.17</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">PER2</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">0.83</td>
<td align="center" valign="top">1.58</td>
<td align="center" valign="top">2.61</td>
<td align="center" valign="top">2.88</td>
<td align="center" valign="top">3.51</td>
<td align="center" valign="top">2.35</td>
<td align="center" valign="top">0.88</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;65, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.733</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">1.07</td>
<td align="center" valign="top">2.24</td>
<td align="center" valign="top">2.74</td>
<td align="center" valign="top">2.79</td>
<td align="center" valign="top">5.42</td>
<td align="center" valign="top">2.70</td>
<td align="center" valign="top">1.11</td>
</tr>
<tr>
<td align="left" valign="top" rowspan="2">PER3</td>
<td align="center" valign="top">P<sub>t1</sub></td>
<td align="center" valign="top">1.20</td>
<td align="center" valign="top">2.45</td>
<td align="center" valign="top">2.83</td>
<td align="center" valign="top">4.42</td>
<td align="center" valign="top">11.46</td>
<td align="center" valign="top">4.52</td>
<td align="center" valign="top">3.70</td>
<td align="center" valign="top" rowspan="2"><italic>W</italic>&#x02009;&#x0003D;&#x02009;27, <italic>p</italic>-value&#x02009;&#x0003D;&#x02009;0.475</td>
</tr>
<tr>
<td align="center" valign="top">P<sub>t2</sub></td>
<td align="center" valign="top">2.42</td>
<td align="center" valign="top">2.94</td>
<td align="center" valign="top">4.36</td>
<td align="center" valign="top">4.96</td>
<td align="center" valign="top">8.44</td>
<td align="center" valign="top">4.43</td>
<td align="center" valign="top">2.07</td>
</tr>
</tbody>
</table>
<table-wrap-foot><p><italic>These comparisons did not reveal any significant differences</italic>.</p></table-wrap-foot></table-wrap>
<table-wrap position="float" id="T4">
<label>Table 4</label>
<caption><p>Slow wave sleep (SWS) and REM content, shown in percentage (%), in controls and patients (at diagnosis and after continuous positive airway pressure treatment).</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="center" rowspan="4"/>
<th valign="top" align="center" colspan="4">Patients<hr/></th>
<th valign="top" align="center" rowspan="2" colspan="2">Controls</th>
</tr>
<tr>
<th valign="top" align="center" colspan="2">No treatment</th>
<th valign="top" align="center" colspan="2">Treatment</th>
</tr>
<tr>
<th valign="top" align="center" colspan="6"><hr/></th>
</tr>
<tr>
<th valign="top" align="center">REM</th>
<th valign="top" align="center">SWS</th>
<th valign="top" align="center">REM</th>
<th valign="top" align="center">SWS</th>
<th valign="top" align="center">REM</th>
<th valign="top" align="center">SWS</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Min</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">0.00</td>
<td align="center" valign="top">9.60</td>
<td align="center" valign="top">1.40</td>
<td align="center" valign="top">9.50</td>
<td align="center" valign="top">3.80</td>
</tr>
<tr>
<td align="left" valign="top">1st Q</td>
<td align="center" valign="top">3.68</td>
<td align="center" valign="top">2.25</td>
<td align="center" valign="top">12.53</td>
<td align="center" valign="top">3.28</td>
<td align="center" valign="top">12.05</td>
<td align="center" valign="top">10.20</td>
</tr>
<tr>
<td align="left" valign="top">Median</td>
<td align="center" valign="top">6.70</td>
<td align="center" valign="top">4.45</td>
<td align="center" valign="top">15.30</td>
<td align="center" valign="top">4.35</td>
<td align="center" valign="top">15.90</td>
<td align="center" valign="top">15.60</td>
</tr>
<tr>
<td align="left" valign="top">Mean</td>
<td align="center" valign="top">7.85</td>
<td align="center" valign="top">5.48</td>
<td align="center" valign="top">16.85</td>
<td align="center" valign="top">4.95</td>
<td align="center" valign="top">15.53</td>
<td align="center" valign="top">14.86</td>
</tr>
<tr>
<td align="left" valign="top">3rd Q</td>
<td align="center" valign="top">10.88</td>
<td align="center" valign="top">7.68</td>
<td align="center" valign="top">19.62</td>
<td align="center" valign="top">6.03</td>
<td align="center" valign="top">17.95</td>
<td align="center" valign="top">20.00</td>
</tr>
<tr>
<td align="left" valign="top">Max</td>
<td align="center" valign="top">18.00</td>
<td align="center" valign="top">13.00</td>
<td align="center" valign="top">27.20</td>
<td align="center" valign="top">9.70</td>
<td align="center" valign="top">23.30</td>
<td align="center" valign="top">24.20</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="T5">
<label>Table 5</label>
<caption><p>Statistical Characterization of the continuous positive airway pressure adherence.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Min</th>
<th valign="top" align="center">1st Quartile</th>
<th valign="top" align="center">Median</th>
<th valign="top" align="center">Mean</th>
<th valign="top" align="center">3rd Quartile</th>
<th valign="top" align="center">Max</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Days of use (%)</td>
<td align="center" valign="top">76</td>
<td align="center" valign="top">86.8</td>
<td align="center" valign="top">96.8</td>
<td align="center" valign="top">93.1</td>
<td align="center" valign="top">100.0</td>
<td align="center" valign="top">100.0</td>
</tr>
<tr>
<td align="left" valign="top">Average number of hours of use per day (h)</td>
<td align="center" valign="top">1.1</td>
<td align="center" valign="top">3.35</td>
<td align="center" valign="top">5.42</td>
<td align="center" valign="top">4.97</td>
<td align="center" valign="top">6.60</td>
<td align="center" valign="top">7.37</td>
</tr>
<tr>
<td align="left" valign="top">IAH flow</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top">1.15</td>
<td align="center" valign="top">1.95</td>
<td align="center" valign="top">3.07</td>
<td align="center" valign="top">3.55</td>
<td align="center" valign="top">10.40</td>
</tr>
<tr>
<td align="left" valign="top">IA flow</td>
<td align="center" valign="top">0.3</td>
<td align="center" valign="top">0.45</td>
<td align="center" valign="top">0.70</td>
<td align="center" valign="top">1.43</td>
<td align="center" valign="top">1.68</td>
<td align="center" valign="top">6.70</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>In our study, as expected, control volunteers and OSAS patients could be easily distinguished by the statistical analysis of the ESS results and polysomnography parameters. They could also be distinguished on the basis of expression levels of <italic>CLOCK</italic>, but not any of the other core clock genes, with the possible exception of <italic>BMAL1</italic>. Interestingly, these results are strikingly reminiscent of metabolic syndrome phenotypes found in the knockout of the corresponding genes in mice as described earlier. The levels of expression of the <italic>CLOCK</italic> gene were altered in OSAS patients before and after CPAP treatment, suggesting that either the standard therapeutic management of these patients is insufficient to correct the disruption of the circadian patterns of genes with expression conditioned by cycles of sleep/vigilance or changes in severe sleep apnea patients are structural, for example, as a consequence of irreversible cerebral vascular lesions.</p>
<p>Before patients were treated, we observed consistently and substantially reduced levels of REM and SWS content as compared to healthy controls. Perhaps significantly, while all the patients who initiated CPAP recovered to normal levels of REM sleep, SWS content remained invariably abnormal, at much lower levels than controls (Table <xref ref-type="table" rid="T4">4</xref>). It was previously shown that even in young healthy adults, selective suppression of SWS causes pronounced decrease of insulin sensitivity, reduced glucose tolerance, and higher diabetes risk (<xref ref-type="bibr" rid="B13">13</xref>).</p>
<p>While it is clear that CPAP substantially improves cognitive and behavioral aspects of the disease (<xref ref-type="bibr" rid="B14">14</xref>), metabolic parameters and other OSAS-related risk factors are only partially modified (<xref ref-type="bibr" rid="B15">15</xref>), which might explain the incomplete reduction of cardiovascular risk in OSAS. These facts point to the need to complement CPAP therapy with other therapy interventions that are aimed at the sleep structure and circadian rhythm normalization and are likely to have a substantial impact on the natural history of the disease. Drugs that effectively improve the SWS content of patients might constitute prime candidates for this goal.</p>
<sec id="S4-1">
<title>Study Limitations</title>
<p>While our major conclusions are supported by robust statistically significant results, our study would benefit from increasing the size of the population of both patients and controls. It is likely that with more samples, statistically significant associations will be found for additional clock genes, especially in the case of <italic>BMAL1</italic>, where a trend is already clear with the current analysis.</p>
</sec>
</sec>
<sec id="S5">
<title>Informed Consent</title>
<p>Informed consent was obtained from all individual participants included in the study.</p>
</sec>
<sec id="S6">
<title>Ethics Statement</title>
<p>All procedures performed in studies involving human participants were in accordance with the ethical standards of the institutional (Centro Hospitalar Lisboa Norte, EPE) and national research committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards.</p>
</sec>
<sec id="S7" sec-type="author-contributor">
<title>Author Contributions</title>
<p>SM and LM conceived and designed the study; SM, RR, NP, ANC, DP, CP, DF, JR, and CB collected the data. RR, AB, and LM analyzed the data. LM wrote the manuscript.</p>
</sec>
<sec id="S8">
<title>Conflict of Interest Statement</title>
<p>All authors certify that they have no affiliations with or involvement in any organization or entity with any financial interest (such as honoraria; educational grants; participation in speakers&#x02019; bureaus; membership, employment, consultancies, stock ownership, or other equity interest; and expert testimony or patent-licensing arrangements), or non-financial interest (such as personal or professional relationships, affiliations, knowledge or beliefs) in the subject matter or materials discussed in this manuscript. The reviewer J H-R and handling editor declared their shared affiliation.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> LM directs the Innate Immunity and Inflammation Laboratory at IGC, is an FCT Investigator and receives financial support from Funda&#x000E7;&#x000E3;o para a Ci&#x000EA;ncia e Tecnologia (FCT) and the European Research Council (ERC-2014-CoG 647888-iPROTECTION). The sponsors had no role in the design or conduct of this research.</p></fn>
</fn-group>
<sec id="S9" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at <uri xlink:href="http://www.frontiersin.org/article/10.3389/fmed.2017.00187/full&#x00023;supplementary-material">http://www.frontiersin.org/article/10.3389/fmed.2017.00187/full&#x00023;supplementary-material</uri>.</p>
<supplementary-material xlink:href="data_sheet_1.docx" id="SM1" mimetype="applicationn/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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