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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mater.</journal-id>
<journal-title>Frontiers in Materials</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mater.</abbrev-journal-title>
<issn pub-type="epub">2296-8016</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmats.2017.00029</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Materials</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>3D Architecture of Trabecular Bone in the Pig Mandible and Femur: Inter-Trabecular Angle Distributions</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Ben-Zvi</surname> <given-names>Yehonatan</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://frontiersin.org/people/u/454806"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Reznikov</surname> <given-names>Natalie</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x02020;</sup></xref>
<uri xlink:href="http://frontiersin.org/people/u/476546"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Shahar</surname> <given-names>Ron</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://frontiersin.org/people/u/201982"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Weiner</surname> <given-names>Steve</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="cor1">&#x0002A;</xref>
<uri xlink:href="http://frontiersin.org/people/u/467359"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Structural Biology, Weizmann Institute of Science</institution>, <addr-line>Rehovot</addr-line>, <country>Israel</country></aff>
<aff id="aff2"><sup>2</sup><institution>Imperial College London</institution>, <addr-line>London</addr-line>, <country>United Kingdom</country></aff>
<aff id="aff3"><sup>3</sup><institution>Faculty of Agriculture, Food and Environment, Koret School of Veterinary Medicine, The Hebrew University of Jerusalem</institution>, <addr-line>Rehovot</addr-line>, <country>Israel</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Gianluca Tozzi, University of Portsmouth, United Kingdom</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Peter Zioupos, Cranfield University, United Kingdom; Antonio DiCarlo, CECAM&#x02013;IT&#x02013;SIMUL Node, Italy</p></fn>
<corresp content-type="corresp" id="cor1">&#x0002A;Correspondence: Steve Weiner, <email>steve.weiner&#x00040;weizmann.ac.il</email></corresp>
<fn fn-type="other" id="fn001"><p><sup>&#x02020;</sup>These authors have contributed equally to this work.</p></fn>
<fn fn-type="other" id="fn002"><p>Specialty section: This article was submitted to Mechanics of Materials, a section of the journal Frontiers in Materials</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>27</day>
<month>09</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>29</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>06</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>11</day>
<month>09</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Ben-Zvi, Reznikov, Shahar and Weiner.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Ben-Zvi, Reznikov, Shahar and Weiner</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Cancellous bone is an intricate network of interconnected trabeculae, to which analysis of network topology can be applied. The inter-trabecular angle (ITA) analysis&#x02014;an analysis of network topological parameters and regularity of network-forming nodes&#x02014;was previously carried out on human proximal femora and showed that trabecular bone follows two main principles: sparsity of the network connectedness (prevalence of nodes with low connectivity in the network) and maximal space spanning (angular offset of connected elements is maximal for their number and approximates the values of geometrically symmetric shapes). These observations suggest that 3D organization of trabecular bone, irrespective of size and shape of individual elements, reflects a tradeoff between minimal metabolic cost of maintenance and maximal network stability under conditions of multidirectional loading. In this study, we validate the ITA application using additional 3D structures (cork and 3D-printed metal lattices), analyze the ITA parameters in porcine proximal femora and mandibles, and carry out a spatial analysis of the most common node type in the porcine mandibular condyle. The validation shows that the ITA application reliably detects designed or evolved topological parameters. The ITA parameters of porcine trabecular bones are similar to those of human bones. We demonstrate functional adaptation in the pig mandibular condyle by showing that the planar nodes with three edges are preferentially aligned in relation to the muscle forces that are applied to the condyle. We conclude that the ITA topological parameters are remarkably conserved, but locally do adapt to applied stresses.</p>
</abstract>
<kwd-group>
<kwd>trabecular bone</kwd>
<kwd>inter-trabecular angle</kwd>
<kwd>topology</kwd>
<kwd>anisotropy</kwd>
<kwd>micro-CT</kwd>
</kwd-group>
<contract-num rid="cn01">29/12 and 875/15</contract-num>
<contract-sponsor id="cn01">Israel Science Foundation<named-content content-type="fundref-id">10.13039/501100003977</named-content></contract-sponsor>
<counts>
<fig-count count="11"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="53"/>
<page-count count="15"/>
<word-count count="9625"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="introduction">
<title>Introduction</title>
<p>Trabecular bone (also known as cancellous or spongey bone) is a lightweight porous material that fills the interior spaces of most bones. In some cases, such as the vertebrae, it comprises almost the entire bone, as the outer compact bone shell is relatively thin. By contrast, in long bones such as the femur and humerus, cancellous bone is found mostly in the articulating ends. Much effort has been made to characterize the 3D architecture and network organization of trabecular bone, both to understand how trabecular bone functions normally and when it is compromised by pathology (Odgaard, <xref ref-type="bibr" rid="B39">1997</xref>; M&#x000FC;ller et al., <xref ref-type="bibr" rid="B37">1998</xref>; Keaveny et al., <xref ref-type="bibr" rid="B24">2001</xref>; Boyde, <xref ref-type="bibr" rid="B9">2003</xref>; Zysset, <xref ref-type="bibr" rid="B53">2003</xref>; Ryan and Krovitz, <xref ref-type="bibr" rid="B45">2006</xref>; Stauber and M&#x000FC;ller, <xref ref-type="bibr" rid="B47">2007</xref>; Allen et al., <xref ref-type="bibr" rid="B1">2008</xref>).</p>
<p>Many analytical techniques in trabecular bone research are based on histomorphometric (2D) procedures (Odgaard, <xref ref-type="bibr" rid="B39">1997</xref>). The utilization of three-dimensional (3D) imaging of bone makes it possible to better characterize the architecture (Odgaard, <xref ref-type="bibr" rid="B39">1997</xref>; An and Freidman, <xref ref-type="bibr" rid="B2">1998</xref>; M&#x000FC;ller, <xref ref-type="bibr" rid="B36">2009</xref>; Kivell, <xref ref-type="bibr" rid="B27">2016</xref>). Current micro-CT-based analyses of trabecular bone characterize its organization in terms of textural structural features within a region of interest [mean trabecular thickness (Tb.Th), mean inter-trabecular distance, bone volume-total volume ratio (BV/TV), and degree of anisotropy (DA)] (Odgaard, <xref ref-type="bibr" rid="B39">1997</xref>; Bouxsein et al., <xref ref-type="bibr" rid="B8">2010</xref>). BV/TV and Tb.Th parameters significantly account for the tissue stiffness and strength (Ascenzi et al., <xref ref-type="bibr" rid="B4">2011</xref>). A higher DA was found to contribute to trabecular bone strength in the case of non-uniform stress by leveling out local strains (Bayraktar and Keaveny, <xref ref-type="bibr" rid="B6">2004</xref>). However, a higher DA was also found in bone samples from donors who sustained a fragility fracture (Ciarelli et al., <xref ref-type="bibr" rid="B11">2000</xref>). The connectivity and continuity of a trabecular network is another determinant of tissue stability (Mosekilde et al., <xref ref-type="bibr" rid="B34">1987</xref>; Kinney and Ladd, <xref ref-type="bibr" rid="B26">1998</xref>). It is noteworthy; however, that network connection density is a parameter independent of bone volume fraction or Tb.Th. From an ontogenetic perspective, the network connection density and the archetypal 3D plan are established early in development&#x02014;around birth in humans (Roschger et al., <xref ref-type="bibr" rid="B44">2001</xref>). After that the process of trabecular network coarsening continues until the stage of skeletal maturity (Ryan and Krovitz, <xref ref-type="bibr" rid="B45">2006</xref>). Throughout adulthood, material texture undergoes further refinement, as seen by increased alignment of collagen fibrils and mineral crystallites along individual trabeculae (Roschger et al., <xref ref-type="bibr" rid="B44">2001</xref>).</p>
<p>Unlike morphology, the study of forms and metric spaces of objects, topology is concerned with objects&#x02019; continuity, compactness, connectedness, boundaries, etc. These are the fundamental properties of objects that do not change with deformations, transformations, and scaling (Kahn, <xref ref-type="bibr" rid="B23">1975</xref>). A network is defined as a set of <italic>nodes</italic> connected <italic>via</italic> a set of <italic>edges</italic>. A special class of networks is &#x0201C;<italic>partially connected networks</italic>,&#x0201D; in which nodes are connected only to adjacent nodes (neighbors), so that the network is fully connected without the cost of maintaining the maximal possible number of edges. Saha et al. (<xref ref-type="bibr" rid="B46">2000</xref>) paved the way for studying trabecular bone topology&#x02014;the manner in which individual elements collectively form a 3D network&#x02014;by suggesting a method of uncoupling trabecular morphology from the 3D organization of the axes, or centroids, of trabeculae in a sample (edges). The topological approach itself helps explain the mechanical properties and might well determine the 3D architectural blueprint, or archetype, of trabecular bone that has been optimized throughout evolution and allows for further functional adaptation (i.e., local Tb.Th, DA, and bone volume fraction being superimposed on topological parameters such as connectedness and continuity). Network regularity and network distortion stand apart from morphology (trabecular shape and size) and topology (trabecular network continuity and connectedness). Network regularity and network distortion, Jensen et al. (<xref ref-type="bibr" rid="B22">1990</xref>) showed that randomization of the regular lattice/network may decrease its stability by a factor of 5 or even 10, while the density (or connectedness) of the network is preserved. Although the authors clearly indicate that a regular artificial lattice is not equivalent to trabecular bone tissue, the network topology (i.e., connectedness) and network regularity (configuration of the network nodes) must be taken into account. From the engineering perspective, Deshpande et al. (<xref ref-type="bibr" rid="B14">2001</xref>) illustrates that the number of connections between the network-forming nodes is crucial for the network rigidity: in a 3D network with node connectedness exceeding 12, bending deformations are eliminated and the loading of the structure becomes stretching-dominated. This is an important observation, as most natural and artificial materials are at least an order of magnitude stronger when loaded axially (in tension or compression) in comparison to bending or shear (Wainwright et al., <xref ref-type="bibr" rid="B51">1976</xref>). The high connectedness of the 3D network provides its rigidity by &#x0201C;triangulation&#x0201D; of interconnected elements. A complete triangulation, however, is incompatible with the shock-absorbing properties of the structure, and the latter is often desirable in biological materials (Deshpande et al., <xref ref-type="bibr" rid="B14">2001</xref>). Hence, it might be reasonable to expect that the topological plan, or blueprint, of trabecular bone incorporates 3D architectural features that optimally combine both the stability of the 3D network and its physiological compliance.</p>
<p>Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>) introduced a new parameter for the analysis of &#x003BC;CT scans of trabecular bone, namely the inter-trabecular angle (ITA). The ITA is defined as the angles between two adjacent trabeculae emanating from the same node, and the angle is calculated for each pair of trabeculae connected at a node in the entire volume of interest. This parameter is, therefore, determined for a large number of pairs (typically, in 1&#x02009;cm<sup>3</sup> of trabecular bone tissue there are 10,000 to 40,000 ITAs).</p>
<p>Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>) studied different areas within the human proximal femur in adults of varying age and found remarkable similarities. First, the trabecular network is a partially connected network, which is reflected in the low connectedness of nodes. More than two-thirds of the nodes have three connecting trabeculae (three-neighbor node, 3-N), followed by one-quarter of all the nodes with four emanating trabeculae (four-neighbor node, 4-N) and about one twelfth of nodes with five connecting trabeculae (five-neighbor node, 5-N). The nodes of higher connectedness are sparse. Significantly, the proportions of 3-N, 4-N, and 5-N nodes are conserved between three areas within the proximal femur and among the individuals roughly as 12:4:1 or 10:3:1. Furthermore, the mean ITA values of nodes with three connecting trabeculae are close to 120&#x000B0; and nodes with 4 connecting trabeculae have a mean ITA close to 109.5&#x000B0;. Thus, ITA mean values are close to the angles that characterize threefold and fourfold symmetrical geometrical motifs with the maximal angular offset of the edges (Thompson, <xref ref-type="bibr" rid="B50">1942</xref>). The prevalence of nodes with low connectedness and the mean ITA values typical of the maximal angular offset possibly indicate a compromise between minimizing of metabolic cost (or achieving sufficient shock dissipation) and maximizing sufficient network stability in multidirectional loading of trabecular bone tissue (Deshpande et al., <xref ref-type="bibr" rid="B14">2001</xref>). Reznikov et al. (<xref ref-type="bibr" rid="B43">2017</xref>) have applied the ITA analysis approach to the study of functional adaptation of trabecular bone in the human calcaneus by comparing normal feet and museum specimens of feet subjected to foot binding (historical cultural practice of foot deformation). They found that while the anisotropy pattern in the calcaneus closely reflects the pattern of loading and follows the tensile and compressive force vectors, the aforementioned ITA parameters in the calcanei of the two groups were nearly identical.</p>
<p>We were surprised to find that the various ITA parameters are so similar in bones that fulfill different mechanical functions and are subjected to different loading regimes. The overall objective of this study is to better understand the biological factors that influence ITA properties. To this end, we carried out this follow-up study in which we (i) tested the validity of our custom written application for ITA analysis by using engineered space-filling lattices and a natural lattice; (ii) performed ITA analysis of pig proximal femora, as well as three different areas in the pig mandible, and compared them to the previously published ITA analysis of human proximal femora; and (iii) studied the spatial distributions of 3-N nodes in different regions within the pig mandibular condyle to determine whether or not topological parameters are affected by locally varying mechanical functions.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<p>For details see Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>).</p>
<sec id="S2-1">
<title>Materials</title>
<p>We analyzed selected parts of the mandible and the head of the femur (Figure <xref ref-type="fig" rid="F1">1</xref>) acquired from three mature 2.5-year-old domestic female pigs. The pigs were provided by Lahav C.R.O (Kibbutz Lahav, Israel). Pigs are considered to be a good non-human model for better understanding human skeletal and dental questions such as osteonecrosis of the femoral head, bone fractures, bone growth, and development, as well as for evaluating new dental implant designs (Buser et al., <xref ref-type="bibr" rid="B10">1991</xref>; An and Freidman, <xref ref-type="bibr" rid="B2">1998</xref>; Terheyden et al., <xref ref-type="bibr" rid="B49">1999</xref>; Nkenke et al., <xref ref-type="bibr" rid="B38">2003</xref>). While porcine bones in general have a denser trabecular network than human trabecular networks (Mosekilde et al., <xref ref-type="bibr" rid="B35">1993</xref>), porcine bone shows similarities to human bone in terms of bone biology (modeling and remodeling), as well as bone mineral density (Mosekilde et al., <xref ref-type="bibr" rid="B35">1993</xref>). The study was approved by Institutional Animal Care and Use Committee at the Weizmann Institute of Science. We also analyzed one cork specimen as an example of natural porous solid of non-animal origin that functions under different mechanical constraints and does not remodel. As examples of engineered 3D structures, we used two types of 3D-printed metal lattices. A rhombic dodecahedron honeycomb structure (here referred to as the D-lattice) in the form of a cylinder 15&#x02009;mm in diameter and 15&#x02009;mm in height, a strut thickness of 0.9&#x02013;1.0&#x02009;mm and the node connectedness was strictly configured by the design (unit cell of rhombic dodecahedron with three intersecting twofold axes) as 4-N, 6-N, and 12-N in an infinite array. This D-lattice contained about 1000 struts connected at 250 nodes, of which approximately 50% were partially truncated at the surface. The stochastic lattice (here referred to as the S-lattice) was also manufactured in a cylindrical shape of 15&#x02009;mm in diameter and 15&#x02009;mm in height, but contained a higher number (around 20,000) of fine connected elements of 150&#x02013;250-&#x000B5;m thick. In the stochastic lattice, the nodes were randomly positioned in 3D and were stochastically interconnected to form a partially connected network with the average number of neighbors given as 4, as described by Ghouse et al. (<xref ref-type="bibr" rid="B17">2017</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Domestic pig mandible <bold>(A)</bold> and the proximal part of the pig femur <bold>(B)</bold>. The dotted lines indicate the areas that were selected for the analysis.</p></caption>
<graphic xlink:href="fmats-04-00029-g001.tif"/>
</fig>
</sec>
<sec id="S2-2">
<title>Methods</title>
<p>The fresh porcine mandibles were cut in half at the symphyseal region using a water cooled rotary diamond saw (Buehler, IsoMet 1000 Precision saw, USA). Each hemi-mandible was sectioned further to obtain three anatomically distinct areas, namely the mandibular condyle, the angle, and the body (Figure <xref ref-type="fig" rid="F1">1</xref>). For specimens P1 and P2 both the right and the left hemi-mandibles were analyzed. In the case of P3, only the right hemi-mandible was analyzed (Table <xref ref-type="table" rid="T1">1</xref>). The proximal part of the femur from each pig was also examined.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>List of examined parts from each of the specimens.</p></caption>
<table frame="hsides" rules="groups">
<tbody>
<tr>
<td align="left" valign="top" rowspan="5">Specimen P1</td>
<td align="left" valign="top" rowspan="3">Mandible</td>
<td align="left" valign="top">Angle</td>
<td align="left" valign="top">Right, left</td>
</tr>
<tr>
<td align="left" valign="top">Body</td>
<td align="left" valign="top">Right, left</td>
</tr>
<tr>
<td align="left" valign="top">Condyle</td>
<td align="left" valign="top">Right, left</td>
</tr><tr><td align="left" valign="top" colspan="3"><hr/></td></tr>
<tr>
<td align="left" valign="top" colspan="2">Femoral head</td>
<td align="left" valign="top">Right</td>
</tr><tr><td align="left" valign="top" colspan="4"><hr/></td></tr>
<tr>
<td align="left" valign="top" rowspan="5">Specimen P2</td>
<td align="left" valign="top" rowspan="3">Mandible</td>
<td align="left" valign="top">Angle</td>
<td align="left" valign="top">Right, left</td>
</tr>
<tr>
<td align="left" valign="top">Body</td>
<td align="left" valign="top">Right, left</td>
</tr>
<tr>
<td align="left" valign="top">Condyle</td>
<td align="left" valign="top">Right, left</td>
</tr><tr><td align="left" valign="top" colspan="3"><hr/></td></tr>
<tr>
<td align="left" valign="top" colspan="2">Femoral head</td>
<td align="left" valign="top">Left</td>
</tr><tr><td align="left" valign="top" colspan="4"><hr/></td></tr>
<tr>
<td align="left" valign="top" rowspan="5">Specimen P3</td>
<td align="left" valign="top" rowspan="3">Mandible</td>
<td align="left" valign="top">Angle</td>
<td align="left" valign="top">Left</td>
</tr>
<tr>
<td align="left" valign="top">Body</td>
<td align="left" valign="top">Left</td>
</tr>
<tr>
<td align="left" valign="top">Condyle</td>
<td align="left" valign="top">Left</td>
</tr><tr><td align="left" valign="top" colspan="3"><hr/></td></tr>
<tr>
<td align="left" valign="top" colspan="2">Femoral head</td>
<td align="left" valign="top">Right</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>A cylindrical cork specimen of 5&#x02009;mm in diameter was collected by trephine drilling of the outer bark layer (phloem) of a cork oak, <italic>Quercus suber</italic>, in the direction perpendicular to the trunk natural surface. The cork specimen was not further modified. The engineered lattices were created using computer-aided design software Rhinoceros 5.0 (McNeel Europe, Barcelona, Spain) and 3D-printed using selective laser sintering of commercially pure titanium (Renishaw AM250, Renishaw Additive Manufacturing, UK) for an unrelated study.</p>
<sec id="S2-2-1">
<title>Micro-CT Analysis</title>
<p>The bones were scanned using a micro-CT (Micro XCT-400, Zeiss X-ray microscopy, CA, USA) at 40&#x02009;kV and 200&#x02009;mA with a voxel size between 38 and 42&#x02009;&#x000B5;m. The voxel size variability was due to minor differences in specimen sizes. For optimal resolution, the voxel size was selected in such a way that the average Tb.Th would incorporate at least five voxels. Once the scans were reconstructed, the cortical shell surrounding the trabecular interior was digitally removed in each of the selected parts (Avizo, FEI, OR, USA). In the case of the mandibular body, both the cortical shell and the teeth were removed digitally.</p>
<p>The cork specimen was scanned using the same set up with the voxel size of 0.8&#x02009;&#x000B5;m for the same consideration of having each structural element resolved with at least five voxels. No artificial contrasting of the cork sample was performed. The engineered lattices were imaged using Nikon Metrology HMX ST 225 scanner (Nikon, Tring, UK), tube peak voltage 180&#x02009;kV, and current 170&#x02009;mA. The voxel size was the same as for bone samples, 38&#x02009;&#x000B5;m.</p>
</sec>
<sec id="S2-2-2">
<title>Calculation of the ITA</title>
<p>Following the protocol described in detail by Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>), the reconstructed 3D images of all specimens were converted to a continuous networks of edges of one voxel thickness, using a skeletonization (thinning) algorithm (Fiji, Skeletonize3D plugin <uri xlink:href="http://fiji.sc/Skeletonize3D">http://fiji.sc/Skeletonize3D</uri>) (Lee et al., <xref ref-type="bibr" rid="B28">1994</xref>) (Figure <xref ref-type="fig" rid="F2">2</xref>). The resulting network of edges was analyzed further using the AnalyzeSkeleton plugin, Fiji, <uri xlink:href="http://fiji.sc/AnalyzeSkeleton">http://fiji.sc/AnalyzeSkeleton</uri> (Arganda-Carreras et al., <xref ref-type="bibr" rid="B3">2010</xref>). The output of AnalyzeSkeleton is a set of vectors (hence referred to as &#x0201C;edges&#x0201D;) represented by (<italic>x, y, z</italic>) coordinates of start points and end points. The junctions of three or more edges were defined as &#x0201C;nodes.&#x0201D; The matrices of edge coordinates were analyzed using the ITA application in Matlab R2015b (MathWorks, USA). The application identifies the type of each node by the number of edges emanating from it and classifies the nodes into categories of 3-N, 4-N, 5-N, or more. The ITA value is calculated for each pair of connected trabeculae and the distributions of many ITA values are reported separately for each node type. Very short edges (&#x0003C;5 pixels for all samples or 35 pixels in the coarse D-lattice) between two closely positioned nodes were replaced by a single node because such edges were shorter than the average Tb.Th. Short edges not connected at one end, which result from the skeletonization of oddly-shaped trabeculae, were also removed following the same principle of being shorter than the average Tb.Th in pixels. The abundance of different node types and the corresponding ITA distributions were exported in Excell (Microsoft, USA) and plotted.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Workflow of bone analysis using inter-trabecular angle application. <bold>(A)</bold> Fragment of the pig mandible that shows the trabecular interior of the mandible body. <bold>(B)</bold> Smaller fragment of trabecular bone in which trabeculae on the left-hand side were replaced by thin lines (edges, referred to as skeletonization). <bold>(C)</bold> Group of connected trabeculae with straight edges and nodes inscribed. <bold>(D&#x02013;F)</bold> Examples of nodes with different connectedness: <bold>(D)</bold> 3-N node, <bold>(E)</bold> 4-N node, and <bold>(F)</bold> 5-N node.</p></caption>
<graphic xlink:href="fmats-04-00029-g002.tif"/>
</fig>
<p>The ITA application for Matlab 2015b is available at the following link: <uri xlink:href="http://www.weizmann.ac.il/Structural_Biology/Weiner/ita-app">http://www.weizmann.ac.il/Structural_Biology/Weiner/ita-app</uri>.</p>
</sec>
<sec id="S2-2-3">
<title>Node Planarity Analysis</title>
<p>The previously reported angular offset between the edges of 3-N nodes suggests that many of them are planar: it is impossible to spread three connected edges by 120&#x000B0; without confining them to a single plane. However, while all maximally offset 3-N nodes are planar, not all planar nodes necessarily have their edges maximally offset (for illustration as in the planar capital letter &#x0201C;T,&#x0201D; compared to &#x0201C;Y&#x0201D;). Since the ITA distribution of 3-N nodes was rather broad (i.e., incorporating ITA values smaller or larger than 120&#x000B0;), the actual confinement of 3-N nodes to planes was analyzed. An auxiliary plane was constructed through three points on each of the three edges. Each point was located at the same unit distance from the node. We define planarity by the angle between the edges and this plane (which is the same for all three edges). We refer to a &#x0201C;planar&#x0201D; node as a 3-N node with an average angle between connecting trabeculae and the auxiliary plane of less than 4&#x000B0;. Non-planar nodes for this study are defined as those with an average angle of more than 20&#x000B0;. Next, we mapped and quantified the spatial distributions of planar and non-planar 3-N nodes in the pig mandibular condyle. We compared the number of nodes and their types per unit volume in different regions in the mandibular condyle.</p>
</sec>
<sec id="S2-2-4">
<title>Analysis of the Spatial Distributions and Orientations of the Planar and Non-Planar 3-N Nodes in the Head and Neck of the Condyle</title>
<p>The coordinates of the 3-N planar (within 4&#x000B0; of being perfectly planar) are compared to 3-N nodes that are distinctly non-planar. We, therefore, chose nodes in which the angle between the plane and the edge is greater than 20&#x000B0;. Each of the examined 3-N nodes (planar and non-planar) was also plotted in 3D space as a reciprocal vector perpendicular to the auxiliary plane that was used to define the planarity. Visualization of the vectors in 3D was done in Avizo (Avizo, FEI, OR, USA). The 3D volume of reciprocal vectors was anatomically aligned. In this orientation, the medial pterygoid muscle is approximately in the anterior-superior to inferior-posterior direction. A snapshot image of the vectors was recorded in this anatomical position. All images were then analyzed using the ImageJ (Fiji) fast Fourier transform (FFT) application. The FFT pattern of aligned elements creates a streak, the definition of which is proportional to the extent of alignment of these elements and the direction of which is orthogonal to that of the aligned elements. Therefore, the orientation of a well-defined streak in an FFT is reciprocal to the plot of the planarity vectors and, thus, coincides with the orientation of the planes of the 3-N nodes.</p>
</sec>
<sec id="S2-2-5">
<title>Analysis Using the Morphometric Bone Structure Parameters</title>
<p>For this type of analysis the plugin BoneJ in ImageJ (Fiji) application was used (Doube et al., <xref ref-type="bibr" rid="B15">2010</xref>). All examined regions of interest were of equal volume. For each volume we calculated the bone volume fraction (BV/TV), mean trabecular separation (Tb.Sp), mean Tb.Th, and DA. DA is a measure of preferential orientation of substructures in a volume <uri xlink:href="http://bonej.org/anisotropy">http://bonej.org/anisotropy</uri> (Odgaard, <xref ref-type="bibr" rid="B39">1997</xref>).</p>
</sec>
</sec>
</sec>
<sec id="S3">
<title>Results</title>
<sec id="S3-1">
<title>Validation of the ITA Application</title>
<sec id="S3-1-1">
<title>Engineered 3D Lattices</title>
<sec id="S3-1-1-1">
<title>Rhombic Dodecahedron Honeycomb Structure (D-Lattice)</title>
<p>The rhombic dodecahedron honeycomb structure design (Figure <xref ref-type="fig" rid="F3">3</xref>A) includes only even-edge nodes (such as 4-N and 6-N) by design. The odd-edge nodes are at the periphery of the specimen and are due to cropping of the infinite lattice to the cylindrical shape. The algorithm detected the mean angle of 4-N nodes as 106&#x000B0; (expected 109.5&#x000B0;) and the mean angle of 6-N nodes as 88&#x000B0; (expected 90&#x000B0;). The observed ITA distributions are sharp (Figures <xref ref-type="fig" rid="F4">4</xref>A,B). Some broadening of the peaks at their base results from the lattice truncation, from the minor imperfections of 3D-printing and of the skeletonization process. Analysis results show that the volume contains 246 nodes, while the expected number is 250. The expected number of intact 4-N nodes is 33% and the measured number is 39%. The expected number of intact 6-N nodes is 10% and the measured number is 13%. The number of expected truncated nodes (located at the specimen surface) is 50% and their measured number (the sum of 3-N, 5-N, and others) is 48%. Figure <xref ref-type="fig" rid="F4">4</xref> shows that the ITA software does calculate the most frequent angle for the 4-N and 6-N nodes very close to the designed values. Since the features identified by the ITA application are either in agreement with the design or can be fully explained by the surface cropping, we conclude that the ITA software faithfully identifies the node connectedness and correctly calculates the ITA angles. It is noteworthy that the angles detected by the application were consistently several degrees smaller than those of the <italic>in silico</italic> design.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Three-dimensional structures that were used for ITA validation, as reconstructed &#x003BC;CT images. <bold>(A)</bold> Dodecahedron-based metal lattice (D-lattice). <bold>(B)</bold> Stochastic metal lattice (S-lattice). <bold>(C)</bold> Cork viewed in the same plane as the natural surface of the tree, note hexagonal honeycomb-like structure in that projection. <bold>(D)</bold> Cork viewed in the radial direction. Note preferential alignment of cells in that projection.</p></caption>
<graphic xlink:href="fmats-04-00029-g003.tif"/>
</fig>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Topological characteristics of the three examined structures. Panel <bold>(A)</bold> shows ITA distributions of the most abundant node (4-N in D-lattice and 3-N in S-lattice and cork). In the D-lattice, the distribution is very narrow, reflecting the fact that this is a designed configuration. In the S-lattice the ITA distribution forms two distinct peaks, one at 60&#x000B0; and another, twice as tall, at 150&#x000B0;. Since the sum of such angles is 360&#x000B0;, these 3-N nodes are planar, but do not possess maximal offset of the edges. In cork, the ITA distribution is unimodal, centered around 116&#x000B0; and, therefore, these nodes in cork approximate a planar shape. Panel <bold>(B)</bold> shows the ITA distributions in the second most abundant nodes for three test samples. D-lattice demonstrates a narrow peak centered as expected based on its design. Note the higher count of ITA at the large angle values (explained in the Section &#x0201C;<xref ref-type="sec" rid="S4">Discussion</xref>&#x0201D;). The S-lattice has a bimodal distribution with equal counts of values around 60&#x000B0; and 120&#x000B0;, which is consistent with a planar structure with non-uniform offset of edges. The cork ITA distribution is similar to bone in shape and width and centers around 107&#x000B0;. That is indicative of the maximal angular offset. Panel <bold>(C)</bold> shows the node abundance as a function of the number of neighbors. The cork trend decays exponentially and is similar to bone; the S-lattice node abundance decays linearly; the D-lattice trend is consistent with the design and the surface cropping effects.</p></caption>
<graphic xlink:href="fmats-04-00029-g004.tif"/>
</fig>
</sec>
<sec id="S3-1-1-2">
<title>Stochastic 3D Lattice (S-Lattice)</title>
<p>The S-lattice is shown in Figures <xref ref-type="fig" rid="F3">3</xref>B. As per the original design, the average network connectedness was found to be 4; the abundance of nodes declines as the number of their neighbors increases. The ratio of nodes 3-N:4-N:5-N was approximately 4:3:1, which is different from 8:3:1 typically seen in bone. Both 3-N and 4-N nodes generated bimodal ITA distributions. The peak values in these distributions suggest planar node configuration: 3-N nodes resemble the capital letters &#x0201C;Y&#x0201D; (mean angles centered around 60&#x000B0; and twice as abundant around 150&#x000B0;, that sum up to 360&#x000B0;); 4-N nodes resemble the capital letter &#x0201C;X&#x0201D; (equal height of two distributions centered around 60&#x000B0; and 120&#x000B0;, that in the case of four angles sum up to 360&#x000B0;). The angles that were previously reported for trabecular bone and formed unimodal distributions were not identified. Moreover, the presence of bimodal distributions indicates that the principle of maximal angular offset for a given number of connected elements is not observed in the S-lattice. The higher connectedness of the network and the defiance of the maximal angular offset principle may indicate that there is either no metabolic cost pressure to form a &#x0201C;simpler&#x0201D; network, and/or there are no mechanical requirements for more pronounced stress dissipation within the structure, as indeed could be expected from an artificially produced construct. We, therefore, conclude that the software is sensitive to network connectedness and differences in node configurations in 3D.</p>
</sec>
</sec>
<sec id="S3-1-2">
<title>Cork</title>
<p>Cork is a component of the cork oak bark (<italic>Quercus suberus</italic>). Cork is a tough protective dead tissue, impermeable to gases and water. The honeycomb structure of cork is very fine compared to trabecular bone with an average cell wall thickness around 4&#x02013;5&#x02009;&#x000B5;m and cell size about 20&#x02013;30&#x02009;&#x000B5;m. Cork is an anisotropic structure: when viewed along the radial direction with respect to the tree trunk, a hexagonal honeycomb structure is apparent; when viewed in the tangential direction with respect to the tree trunk, the preferred radial alignment of the cell walls is clearly visible (Figures <xref ref-type="fig" rid="F3">3</xref>C,D). Although cork is a plant tissue with the size of its elements at least 20 times smaller than in bone, its ITA analysis demonstrates high similarity to bone 3D organization, namely the relatively low network connectedness and similar distributions of the ITA values. Although the node abundance declines with the increasing node connectedness, the trend is less pronounced than in trabecular bone, with the ratio of 5-N:4-N:3-N nodes being 6:3:1. This indicates a somewhat higher network connectedness than in trabecular bone, although lower than in the engineered stochastic lattice.</p>
</sec>
</sec>
<sec id="S3-2">
<title>ITA Analysis of Pig Mandibles and Femora: Possibility of Adaptation at the Topological Level</title>
<sec id="S3-2-1">
<title>Node Abundances and Proportions</title>
<p>Figure <xref ref-type="fig" rid="F5">5</xref> shows the abundances of the different node types for the pig mandible samples and the pig femoral head. In general, the proportions of the 3:4:5-N nodes are similar to those reported for the human femur, such as 10:3:1.</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>Abundances of different nodes types in the examined areas of the pig mandibular condyle (five specimens), mandibular angle (five specimens), mandibular body (five specimens), pig proximal femur (three specimens) and human proximal femur [average of five specimens is taken from Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>)].</p></caption>
<graphic xlink:href="fmats-04-00029-g005.tif"/>
</fig>
<p>Figure <xref ref-type="fig" rid="F6">6</xref> shows the ITA distribution values for each of the three most abundant node types in bins of 4&#x000B0; for the pig samples. The abundances (in percent) of ITA values (in degrees) are plotted after normalizing to the total number of measurements, which were between about 3,000 (for the least abundant node) and about 110,000 (for the most abundant node) for each volume analyzed. Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>) estimated the errors for the 3-N, 4-N, and 5-N bins. The largest error for samples with about 3,000 nodes is around 20%. We, therefore, conclude that the ITA distributions of the different porcine samples are remarkably similar to each other, and TO TH to the human femoral heads.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Inter-trabecular angle (ITA) distributions of all specimens measured per node type. Frequencies of binned ITA values are given in percent of the total number measured; horizontal axes show ITA values in degrees. <bold>(A)</bold> 3-N nodes; <bold>(B)</bold> 4-N nodes; <bold>(C)</bold> 5-N nodes. Legends: first row, all condyles; second row, all mandibular angles; third row, all mandibular bodies; fourth row, all pig femoral heads.</p></caption>
<graphic xlink:href="fmats-04-00029-g006.tif"/>
</fig>
<p>We also calculated the mean ITA distribution values for all the pig samples analyzed (Table <xref ref-type="table" rid="T2">2</xref>). These mean values are plotted for the different node types in Figure <xref ref-type="fig" rid="F7">7</xref> where they are also compared to the human femoral heads. Again the differences are small. We also note that about one-third of all the ITA values in each distribution falls within 10&#x000B0; on either side of the mean. In other words, &#x000B1;10&#x000B0;, on either side of the mean values represents a third of all the values of a sample.</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>Mean values of ITA distributions per node type, averaged for the samples measured and half width at half maximum (HWHM) of ITA distributions per node type, averaged for the samples measured.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left"/>
<th valign="top" align="center">3-N mean</th>
<th valign="top" align="center">3-N HWHM</th>
<th valign="top" align="center">4-N mean</th>
<th valign="top" align="center">4-N HWHM</th>
<th valign="top" align="center">5-N mean</th>
<th valign="top" align="center">5-N HWHM</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Angle</td>
<td align="center" valign="top">116&#x02009;&#x000B1;&#x02009;0.5</td>
<td align="center" valign="top">29&#x02009;&#x000B1;&#x02009;1.2</td>
<td align="center" valign="top">107&#x02009;&#x000B1;&#x02009;0.8</td>
<td align="center" valign="top">31&#x02009;&#x000B1;&#x02009;0.3</td>
<td align="center" valign="top">102&#x02009;&#x000B1;&#x02009;0.5</td>
<td align="center" valign="top">32&#x02009;&#x000B1;&#x02009;0.3</td>
</tr>
<tr>
<td align="left" valign="top">Body</td>
<td align="center" valign="top">114&#x02009;&#x000B1;&#x02009;0.5</td>
<td align="center" valign="top">32&#x02009;&#x000B1;&#x02009;1.1</td>
<td align="center" valign="top">105&#x02009;&#x000B1;&#x02009;0.8</td>
<td align="center" valign="top">33&#x02009;&#x000B1;&#x02009;1</td>
<td align="center" valign="top">102&#x02009;&#x000B1;&#x02009;0.5</td>
<td align="center" valign="top">34&#x02009;&#x000B1;&#x02009;1.3</td>
</tr>
<tr>
<td align="left" valign="top">Condyle</td>
<td align="center" valign="top">115&#x02009;&#x000B1;&#x02009;0.4</td>
<td align="center" valign="top">28&#x02009;&#x000B1;&#x02009;0.5</td>
<td align="center" valign="top">107&#x02009;&#x000B1;&#x02009;0.5</td>
<td align="center" valign="top">31&#x02009;&#x000B1;&#x02009;0.3</td>
<td align="center" valign="top">102&#x02009;&#x000B1;&#x02009;0.4</td>
<td align="center" valign="top">32&#x02009;&#x000B1;&#x02009;0.2</td>
</tr>
<tr>
<td align="left" valign="top">Femur</td>
<td align="center" valign="top">115&#x02009;&#x000B1;&#x02009;0.6</td>
<td align="center" valign="top">28&#x02009;&#x000B1;&#x02009;0.7</td>
<td align="center" valign="top">106&#x02009;&#x000B1;&#x02009;0.6</td>
<td align="center" valign="top">30&#x02009;&#x000B1;&#x02009;0.7</td>
<td align="center" valign="top">102&#x02009;&#x000B1;&#x02009;0.6</td>
<td align="center" valign="top">32&#x02009;&#x000B1;&#x02009;0.6</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Inter-trabecular angle mean values for the three most abundant node types. All measurements are presented: five values of porcine mandibular condyle, angle and body and three values for porcine proximal femur. Human proximal femur values are averaged (five individuals) and shown for reference (Reznikov et al., <xref ref-type="bibr" rid="B42">2016</xref>).</p></caption>
<graphic xlink:href="fmats-04-00029-g007.tif"/>
</fig>
<p>All the above observations clearly show that the ITA value abundances and distributions are remarkably similar when comparing the different regions within the pig mandible, the pig femoral head and the human femoral head (Reznikov et al., <xref ref-type="bibr" rid="B42">2016</xref>). These ITA characteristics are, thus, conserved between two different bones and two different mammals: pigs and humans. We do, however, note that based on the validation tests that we performed this conclusion is well substantiated for rod-shaped trabeculae, but because of the inherent difficulties of obtaining reliable skeletonization products for flat objects (Stauber and M&#x000FC;ller, <xref ref-type="bibr" rid="B47">2007</xref>), this conclusion may be biased to some unknown extent against plate-shaped trabeculae. We do, however, note that in the case of the cork sample, which is inherently platy as it consists mainly of cell walls, only about 12% of the edges were not connected and hence eliminated. Such unconnected edges mainly arise due to the skeletonization of plate-shaped elements. So we expect the bias in the bone samples after eliminating unconnected edges mainly from plates, to be less than 12%.</p>
</sec>
<sec id="S3-2-2">
<title>ITA Analysis of 3-N Nodes in the Mandibular Condylar Head and Neck</title>
<p>As distinct parts of the mandible are subjected to different loading patterns, we expected these differences to be reflected in the spatial distributions of the nodes within the trabecular network. We, therefore, chose to carry out a site-specific study of node spatial distributions in the condylar head and neck, as the head is subjected to strains mainly in the sagittal plane as part of the temporomandibular joint (TMJ; Liu and Herring, <xref ref-type="bibr" rid="B31">2000a</xref>,<xref ref-type="bibr" rid="B32">b</xref>; Herring et al., <xref ref-type="bibr" rid="B20">2002</xref>).</p>
<sec id="S3-2-2-1">
<title>Node Distributions within the Mandibular Condyle</title>
<p>The head and the upper part of the neck of the condyle of specimen P1 is shown in Figure <xref ref-type="fig" rid="F8">8</xref>. The dotted line shows the anatomical boundary between the head and the neck (Figure <xref ref-type="fig" rid="F8">8</xref>A), P1 condyle showing only the outer surfaces. The nomenclature for orientation is also shown. The arrows show the directions of the prevailing principal stresses following Liu and Herring (<xref ref-type="bibr" rid="B31">2000a</xref>,<xref ref-type="bibr" rid="B32">b</xref>). Sagittal section of P1 condyle is represented in Figures <xref ref-type="fig" rid="F8">8</xref>B, the white dots show the 3D distribution of all the 3-N nodes (Figures <xref ref-type="fig" rid="F8">8</xref>C). All the nodes in the volume are projected onto one plane. This projection shows that there are more 3-N nodes closer to the articular surface of the condylar head as compared to the other areas.</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p><bold>(A)</bold> &#x003BC;CT image of the condylar head and neck of the pig. The arrows show the major compressive stress trajectories, as shown by Liu and Herring (<xref ref-type="bibr" rid="B31">2000a</xref>,<xref ref-type="bibr" rid="B32">b</xref>). <bold>(B)</bold> Section through the 3D &#x003BC;CT image of the condylar head and neck and <bold>(C)</bold> is a plot of the locations of all the 3-N nodes in the whole volume of the scan projected onto this plane. <bold>(C)</bold> Visually demonstrates that there are more 3-N nodes in the condylar head as compared to the neck.</p></caption>
<graphic xlink:href="fmats-04-00029-g008.tif"/>
</fig>
<p>In order to obtain quantitative data on the density of the nodes in different regions, we analyzed the number of nodes per unit volume in the articular portion of the condylar head and compared this value to the number of nodes in the same volume in the condylar neck. The same selected equal volumes taken from the head of the condyle and the neck were used for evaluating mean Tb.Th and separation, trabecular volume fraction and the DA. Table <xref ref-type="table" rid="T3">3</xref> combines these morphometric parameters with the results of the topological analysis. It shows that the total number of nodes per unit volume in the articular portion of the condylar head is between 2.0 and 2.6 times higher than in the condylar neck. This is consistent with the visual presentation of the 3-N nodes in the condylar head and neck. As it is also visually clear, the trabecular meshwork is finer in the head than in the neck of the condyle. There are also proportionately more 4-N and 5-N nodes compared to 3-N nodes in the head compared to the neck, which is consistent with the higher network connectedness.</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Morphometric and topological parameters in the trabecular network of the pig mandible, condylar head (H), and neck (N), and their ratio.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left" rowspan="3" style="background-color:#C6C8CA;">Parameter</th>
<th valign="top" style="background-color:#C6C8CA;" align="center" colspan="3">Pig 1, Left</th>
<th valign="top" style="background-color:#C6C8CA;" align="center" colspan="3">Pig 1, Right</th>
</tr><tr>
<th valign="top" align="left" colspan="6" style="background-color:#C6C8CA;"><hr/></th>
</tr><tr>
<th valign="top" style="background-color:#DCDDDE;" align="center">Head</th>
<th valign="top" style="background-color:#DCDDDE;" align="center">Neck</th>
<th valign="top" style="background-color:#DCDDDE;" align="center">H/N</th>
<th valign="top" style="background-color:#DCDDDE;" align="center">Head</th>
<th valign="top" style="background-color:#DCDDDE;" align="center">Neck</th>
<th valign="top" style="background-color:#DCDDDE;" align="center">H/N</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N, number</td>
<td align="center" valign="top">12,668</td>
<td align="center" valign="top">6,565</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.9</td>
<td align="center" valign="top">14,765</td>
<td align="center" valign="top">6,202</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.4</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">4-N, number</td>
<td align="center" valign="top">5,916</td>
<td align="center" valign="top">2,552</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.3</td>
<td align="center" valign="top">7,547</td>
<td align="center" valign="top">2,618</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.9</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">5-N, number</td>
<td align="center" valign="top">3,047</td>
<td align="center" valign="top">997</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">3.1</td>
<td align="center" valign="top">3,364</td>
<td align="center" valign="top">959</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">3.5</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Total</td>
<td align="center" valign="top">26,708</td>
<td align="center" valign="top">13,204</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2</td>
<td align="center" valign="top">31,727</td>
<td align="center" valign="top">12,459</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.6</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N planar</td>
<td align="center" valign="top">3,445</td>
<td align="center" valign="top">1,839</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.9</td>
<td align="center" valign="top">3,989</td>
<td align="center" valign="top">1,611</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.5</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N non-planar</td>
<td align="center" valign="top">1,632</td>
<td align="center" valign="top">1,251</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.3</td>
<td align="center" valign="top">2,062</td>
<td align="center" valign="top">1,069</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.9</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Planar/non-planar</td>
<td align="center" valign="top">2.1</td>
<td align="center" valign="top">1.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;"/>
<td align="center" valign="top">1.9</td>
<td align="center" valign="top">1.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;"/>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Degree of anisotropy (DA)</td>
<td align="center" valign="top">0.8</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.6</td>
<td align="center" valign="top">0.8</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.6</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Bone volume&#x02013;total volume ratio (BV/TV)</td>
<td align="center" valign="top">0.4</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.8</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Thickness (Tb.Sp), &#x000B5;m (SD)</td>
<td align="center" valign="top">380 (144)</td>
<td align="center" valign="top">468 (268)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.8</td>
<td align="center" valign="top">387 (211)</td>
<td align="center" valign="top">499 (281)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.8</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Tb.Th, &#x003BC;m (SD)</td>
<td align="center" valign="top">247 (73)</td>
<td align="center" valign="top">468 (130)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.5</td>
<td align="center" valign="top">306 (109)</td>
<td align="center" valign="top">413 (181)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.7</td>
</tr><tr><td align="left" valign="top" colspan="7"><hr/></td></tr>
<tr>
<td align="left" valign="top" rowspan="3"/>
<td align="center" valign="top" style="background-color:#C6C8CA;" colspan="3"><bold>Pig 2, Left</bold></td>
<td align="center" valign="top" style="background-color:#C6C8CA;" colspan="3"><bold>Pig 2, Right</bold></td>
</tr><tr>
<td align="center" valign="top" colspan="6" style="background-color:#C6C8CA;"><hr/></td>
</tr><tr>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>Head</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>Neck</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>H/N</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>Head</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>Neck</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>H/N</bold></td>
</tr><tr><td align="left" valign="top" colspan="7"><hr/></td></tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N, number</td>
<td align="center" valign="top">15,342</td>
<td align="center" valign="top">6,448</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.4</td>
<td align="center" valign="top">14,721</td>
<td align="center" valign="top">6,719</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.2</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">4-N, number</td>
<td align="center" valign="top">6,489</td>
<td align="center" valign="top">2,468</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.6</td>
<td align="center" valign="top">5,827</td>
<td align="center" valign="top">2,361</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.5</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">5-N, number</td>
<td align="center" valign="top">3,958</td>
<td align="center" valign="top">959</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">4.1</td>
<td align="center" valign="top">3,354</td>
<td align="center" valign="top">747</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">4.5</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Total</td>
<td align="center" valign="top">30,464</td>
<td align="center" valign="top">12,539</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.4</td>
<td align="center" valign="top">28,727</td>
<td align="center" valign="top">12,333</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.3</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N planar</td>
<td align="center" valign="top">3,546</td>
<td align="center" valign="top">1,607</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.2</td>
<td align="center" valign="top">3,309</td>
<td align="center" valign="top">1,544</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.1</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N non-planar</td>
<td align="center" valign="top">1,489</td>
<td align="center" valign="top">1,057</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.4</td>
<td align="center" valign="top">1,516</td>
<td align="center" valign="top">962</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.6</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Planar/non-planar</td>
<td align="center" valign="top">2.4</td>
<td align="center" valign="top">1.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;"/>
<td align="center" valign="top">2.2</td>
<td align="center" valign="top">1.6</td>
<td align="center" valign="top" style="background-color:#DCDDDE;"/>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">DA</td>
<td align="center" valign="top">0.8</td>
<td align="center" valign="top">0.6</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.3</td>
<td align="center" valign="top">0.7</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.4</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">BV/TV</td>
<td align="center" valign="top">0.4</td>
<td align="center" valign="top">0.4</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1</td>
<td align="center" valign="top">0.6</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.2</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Tb.Sp, &#x003BC;m (SD)</td>
<td align="center" valign="top">348 (168)</td>
<td align="center" valign="top">420 (232)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.8</td>
<td align="center" valign="top">322 (112)</td>
<td align="center" valign="top">402 (164)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.8</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Tb.Th, &#x000B5;m (sdSD)</td>
<td align="center" valign="top">314 (116)</td>
<td align="center" valign="top">357 (147)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.9</td>
<td align="center" valign="top">359 (115)</td>
<td align="center" valign="top">470 (147)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.8</td>
</tr><tr><td align="left" valign="top" colspan="7"><hr/></td></tr>
<tr>
<td align="left" valign="top" rowspan="3"/>
<td align="center" valign="top" style="background-color:#C6C8CA;" colspan="3"><bold>Pig 3, Left</bold></td>
<td align="center" valign="top" style="background-color:#C6C8CA;" colspan="3" rowspan="3"><bold>Cork</bold></td>
</tr><tr>
<td align="center" valign="top" colspan="3" style="background-color:#C6C8CA;"><hr/></td>
</tr><tr>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>Head</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>Neck</bold></td>
<td align="center" valign="top" style="background-color:#DCDDDE;"><bold>H/N</bold></td>
</tr><tr><td align="left" valign="top" colspan="7"><hr/></td></tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N, number</td>
<td align="center" valign="top">12,453</td>
<td align="center" valign="top">6,256</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2</td>
<td align="center" valign="top" colspan="3">88,986</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">4-N, number</td>
<td align="center" valign="top">8,114</td>
<td align="center" valign="top">2,887</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.8</td>
<td align="center" valign="top" colspan="3">48,430</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">5-N, number</td>
<td align="center" valign="top">3,452</td>
<td align="center" valign="top">9,55</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">3.6</td>
<td align="center" valign="top" colspan="3">19,119</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Total</td>
<td align="center" valign="top">27,940</td>
<td align="center" valign="top">12,833</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">2.2</td>
<td align="center" valign="top" colspan="3">156,535</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N planar</td>
<td align="center" valign="top">2,605</td>
<td align="center" valign="top">1,670</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.6</td>
<td align="center" valign="top" colspan="3">30,552</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">3-N non-planar</td>
<td align="center" valign="top">1,316</td>
<td align="center" valign="top">1,065</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.2</td>
<td align="center" valign="top" colspan="3">4,435</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Planar/non-planar</td>
<td align="center" valign="top">1.9</td>
<td align="center" valign="top">1.5</td>
<td align="center" valign="top" style="background-color:#DCDDDE;"/>
<td align="center" valign="top" colspan="3">6.8</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">DA</td>
<td align="center" valign="top">0.7</td>
<td align="center" valign="top">0.6</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.2</td>
<td align="center" valign="top" colspan="3">0.6</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">BV/TV</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top">0.4</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">1.3</td>
<td align="center" valign="top" colspan="3">0.2</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Tb.Sp, &#x003BC;m (SD)</td>
<td align="center" valign="top">437 (140)</td>
<td align="center" valign="top">463 (160)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.9</td>
<td align="center" valign="top" colspan="3">18 (7)</td>
</tr>
<tr>
<td align="left" valign="top" style="background-color:#DCDDDE;">Tb.Th, &#x003BC;m (SD)</td>
<td align="center" valign="top">316 (135)</td>
<td align="center" valign="top">341 (160)</td>
<td align="center" valign="top" style="background-color:#DCDDDE;">0.9</td>
<td align="center" valign="top" colspan="3">3.7 (0.96)</td>
</tr>
</tbody>
</table>
<table-wrap-foot><p><italic>Number of different node types in the head and the neck present within equal sized volumes, as well as the parameters of morphometric analysis of trabecular bone</italic>.</p></table-wrap-foot></table-wrap>
</sec>
<sec id="S3-2-2-2">
<title>Alignment of Planar 3-N Nodes in the Condyle Head</title>
<p>We calculated the planarity of the 3-N nodes in all the pig samples analyzed here (Figure <xref ref-type="fig" rid="F9">9</xref>). Thirty to 35% of the 3-N nodes are within 4&#x000B0; of being perfectly planar. A similar observation was made for human femoral heads (Reznikov et al., <xref ref-type="bibr" rid="B42">2016</xref>).</p>
<fig id="F9" position="float">
<label>Figure 9</label>
<caption><p>Planarity of 3-N nodes. Percentage of nodes is plotted versus the angle between one of the edges and the plane. Insert: the measured angle, red; auxiliary plane, purple; edges, green.</p></caption>
<graphic xlink:href="fmats-04-00029-g009.tif"/>
</fig>
<p>Since the condylar head of the pig mandible demonstrates a higher content of planar nodes along with the higher DA, we plotted the orientation of the planar 3-N nodes in the condyle in the same projection, as shown in Figure <xref ref-type="fig" rid="F8">8</xref>, which means in the direction of principal stresses. In Figure <xref ref-type="fig" rid="F10">10</xref>, the planes of planar 3-N nodes are shown by reciprocal vectors, perpendicular to those planes. Fast Fourier transform is generated from the image of the vectors and, also reciprocally, illustrates the co-alignment of vectors. Figure <xref ref-type="fig" rid="F10">10</xref> show that the vectors from the planar 3-N nodes do have a preferred orientation. The preferential orientation of the planar nodes, as revealed from the FFT, is aligned parallel to the principal directions of loading shown in Figure <xref ref-type="fig" rid="F8">8</xref>A.</p>
<fig id="F10" position="float">
<label>Figure 10</label>
<caption><p>Vector orientations of the 3-N planar nodes from specimen P1, P2, P3 represented in the right part of the figure <bold>(A,C,E)</bold> and the FFT analyses of images are represented in the left side <bold>(B,D,F)</bold>.</p></caption>
<graphic xlink:href="fmats-04-00029-g010.tif"/>
</fig>
</sec>
</sec>
</sec>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>Here, we show that the node abundances, the angular distributions, and mean ITA values in three different parts of the pig mandible and the pig proximal femur are principally similar to other previously analyzed bone samples [of the human proximal femur (Reznikov et al., <xref ref-type="bibr" rid="B42">2016</xref>) and two differently loaded groups of human calcanei (Reznikov et al., <xref ref-type="bibr" rid="B43">2017</xref>) in terms of node type proportions and the maximal angular offset of connected elements]. These results, therefore, clearly show that ITA values are conserved even between species from different mammalian taxonomic groups and between bones that carry out different mechanical functions. We, therefore, conclude that the topological parameters reflect functionally important aspects of trabecular bone structure.</p>
<sec id="S4-1">
<title>ITA Analysis Validation</title>
<p>The results of the validation of ITA analysis show that for a reticulate network comprised of rod-shaped elements (&#x0201C;trabeculae&#x0201D;) with known ITAs, the software accurately calculates the abundance of node types, accurately detects the mean ITA angles incorporated by design and realistically estimates the number of nodes truncated at the edges and their 3D configurations. Furthermore a stochastic reticulate structure produces distributions totally different from those reported for trabecular bone by Reznikov et al. (<xref ref-type="bibr" rid="B42">2016</xref>), showing that the software does not generate the same result regardless of structure.</p>
<p>In natural structures, as opposed to engineered structures the mean ITA values tend to be very close to angles in symmetrical geometric motifs, i.e., 120&#x000B0; for 3-N nodes and 109&#x000B0; for 4-N nodes. In these symmetrical motifs, the connecting edges are offset as far as possible from each other. In this way, the trabeculae can optimally cover 3D space with the least number of connecting elements. Together with the prevalence of simple nodes in the partially connected network, this results in an optimized combination of minimal metabolic cost of the structure and maximal stability to multidirectional loading. The width of the ITA distributions accounts for inherent irregularity of biological structures. Interestingly, both living animal tissue (bone) and dead plant tissue (cork) follow the same principles of network simplicity and maximal volume spanning, despite the different size scale of their networks. This observation stems from the fact that the ITA application analyzes topological determinants of the structure, uncoupled from their size, shape, and global orientation. Since the results obtained from the cork sample were close to the ITA parameters observed in bone, one sample of cork was deemed sufficient for validation. This observation, however, requires a thorough study of plant tissues and other similar biological lattices.</p>
</sec>
<sec id="S4-2">
<title>ITA and Functional Adaptation</title>
<p>We noticed that as the number of node neighbors increases, the ITA distributions become skewed: the 3-N distribution can be accounted for with a single Gaussian curve, as is expected from a natural continuous distribution of independent values. The distributions of 4-N and 5-N nodes, however, require a minor Gaussian curve in the region of high ITA values, for a satisfactory coefficient of determination (Figure <xref ref-type="fig" rid="F11">11</xref>). The contribution of the minor Gaussian curve is higher in the case of the 5-N distribution (the height of the minor peak is 25% from the height of the 4-N general distribution, and the height of the minor peak in the 5-N distribution is around 40%). A probable explanation for the presence of the minor Gaussian curves could be that the application detects not only the angles between the near branches of a node but also between remote branches in the same node of high connectivity. Indeed, in Figures <xref ref-type="fig" rid="F4">4</xref>B, the plot of the D-lattice demonstrates higher values in the region 150&#x02013;180&#x000B0;. This is a plot of 6-N nodes. In a 6-N node of perfect threefold symmetry all 6 edges are oriented at 90&#x000B0; to one another and form 12 right angles between the near edges. However, there are also 3 angles of 180&#x000B0; between remote edges of the same node. Nodes of three neighbors can have only three near-edge angles; 4-N nodes also can have only near-edge angles (as it has six possible pairs of near edges between which an angle can be measured). However, a 5-N node necessarily incorporates one angle between remote edges, along with nine pairs of near edges. Therefore, starting from the node complexity N-5 or higher, a bimodal ITA distribution can be expected, in which the major peak corresponds to the mean angle for pairs of near edges, and the minor peak corresponds to the angle for the only pair of remote edges. The minor peak position can be expected close to 180&#x000B0;. The fact that in trabecular bone ITA distribution the minor Gaussian peak is present to some extent in the 4-N ITA distribution can be possibly explained by life-long bone remodeling, when some nodes may lose one of their original branches.</p>
<fig id="F11" position="float">
<label>Figure 11</label>
<caption><p>Skewness of the ITA distribution increases with node connectedness. While <bold>(A)</bold> 3-N distribution can be fitted with a single Gaussian distribution, the distributions of <bold>(B)</bold> 4-N and <bold>(C)</bold> 5&#x000B0;-N ITA values require a minor Gaussian curve for a good fit. The minor distributions center around 150&#x02013;160&#x000B0;.</p></caption>
<graphic xlink:href="fmats-04-00029-g011.tif"/>
</fig>
<p>The finding of highly conserved ITA properties may seem to clash with the well-established connection between trabecular bone texture and function. This connection was originally described in the work of Julius Wolff, who suggested that individual trabeculae of the proximal human femur are aligned along the principal stress directions (Wolff, <xref ref-type="bibr" rid="B52">1892</xref>). Many studies examined this premise (Enlow, <xref ref-type="bibr" rid="B16">1968</xref>; Bertram and Swartz, <xref ref-type="bibr" rid="B7">1991</xref>; Currey, <xref ref-type="bibr" rid="B13">2012</xref>), including several experimental studies that directly demonstrate this connection. Studies of trabecular bone in the knee joint of guinea fowl showed that the fine trabecular bone in the distal femur has a high degree of correspondence between the changes in joint angle and trabecular orientation (Pontzer et al., <xref ref-type="bibr" rid="B41">2006</xref>). A study of the distal radius in a sheep model also supported the finding that trabecular bone adjusts and realigns in response to change in loading direction (Barak et al., <xref ref-type="bibr" rid="B5">2011</xref>). The study of the calcaneus in normal and deformed human feet shows that consistent long-term loading results in the formation of a reproducible anisotropy pattern of trabecular bone. However, there is no real conflict between the fact that bone is capable of functional adaptation and the invariance of the ITA parameters in the analyzed samples. The difference between the traditionally analyzed morphometric parameters and the topological parameters reported here is that the ITA analysis is blind to the local thickness and form of the elements and only considers the trabecular network determinants. The universal topology of a trabecular network can be viewed as the 3D archetype on which various changes in size and shape can be superimposed. Thus, the topology observed in trabecular bone can adopt a multitude of different texture parameters such as increase in Tb.Th, without negating the principles of network simplicity and maximal spanning of the 3D space.</p>
<p>A detailed comparison of the nodes within the condylar head and neck did, however, reveal an alternative form of adaptation that does not involve trabecular shape, but also does not breach the topology. A higher DA was identified in all five condylar heads analyzed, in comparison with the condylar neck. Along with that the average Tb.Th and its SD are consistently lower in the condylar head, and the trabecular spacing and its SD are also lower. These observations are in accord with a finer and denser network. In addition, the total number of nodes and the proportions of 4-N and 5-N nodes were higher in the condylar head than in the condylar neck, further indicating that the fine trabecular network of the condylar head is densely connected. One way to achieve a higher DA is by network coarsening and thickening of the trabeculae that are co-oriented with the principal stress trajectories (Ryan and Krovitz, <xref ref-type="bibr" rid="B45">2006</xref>). But the opposite is observed in the fine and densely connected network of the condylar head. Significantly, the ratio of planar 3-N nodes to non-planar 3-N nodes is consistently larger in the head than in the neck. Moreover, the orientation of the planes of these flat 3-N nodes was found along the physiological stress trajectory. Therefore, the higher anisotropy can be achieved by local transformation of the network elements that does not amend the general topology, but also allows retaining the scale and shape of the network elements.</p>
<p>The mandibular condyle is one of the components of the TMJ. The condylar head is subjected to forces in well-defined directions (Liu and Herring, <xref ref-type="bibr" rid="B31">2000a</xref>,<xref ref-type="bibr" rid="B32">b</xref>; Herring et al., <xref ref-type="bibr" rid="B20">2002</xref>; Cornish et al., <xref ref-type="bibr" rid="B12">2006</xref>) as this is a paired joint that has limited freedom around the sagittal or vertical axes, and primarily allows movement around the transverse axis. Since consistent and repetitive loading of bones results in increasing their anisotropy, the structure of trabecular bone in the condylar head is expected to adapt accordingly, consistent with our results and with previous studies (Gosen, <xref ref-type="bibr" rid="B18">1974</xref>; Hekneby, <xref ref-type="bibr" rid="B19">1974</xref>; Teng and Herring, <xref ref-type="bibr" rid="B48">1995</xref>; Kim et al., <xref ref-type="bibr" rid="B25">2013</xref>). Interestingly, the higher anisotropy in the condylar head is achieved by transformation of the network motifs (preferred orientation of the planar 3-N nodes), and the fine scale of the network remains unaltered. We speculate that the biological rationale for that might be the preservation of a higher compliance of the fine trabecular tissue. Indeed, increased anisotropy combined with higher bone volume density provides the highest stiffness of trabecular bone (Maquer et al., <xref ref-type="bibr" rid="B33">2015</xref>). On the other hand, it was shown that higher stiffness of trabecular bone is associated with degenerative disease of articular cartilage (Li and Aspden, <xref ref-type="bibr" rid="B29">1997a</xref>,<xref ref-type="bibr" rid="B30">b</xref>; Hurwitz et al., <xref ref-type="bibr" rid="B21">2001</xref>). We also speculate that increasing trabecular bone anisotropy by network transformation (and not by trabecular coarsening and stiffening in certain orientations) might be Nature&#x02019;s strategy to preserve articular cartilage from untimely wear and tear. This observation opens new insights into two important problems in bone research, namely joint degeneration (perhaps, adaptation to stereotypical loading by increased anisotropy with trabecular network coarsening, rather than co-alignment of some topological elements) and bone fragility (i.e., inability to stably cope with loads low in magnitude, but unusual in direction).</p>
<p>The analysis presented here certainly pertains to rod-shaped trabeculae; its validity with regard to plate-shaped trabeculae needs to be studied, as the skeletonization procedure currently used in our ITA analysis code may have some difficulties in properly identifying and separately representing plate-shaped trabeculae. Analysis results will, therefore, be more valid and mechanically significant in those instances where the majority of the trabeculae are rod shaped, like the bodies of vertebrae (Parkinson and Fazzalari, <xref ref-type="bibr" rid="B40">2013</xref>).</p>
</sec>
</sec>
<sec id="S5">
<title>Conclusion</title>
<p>The ITA application reliably detects the topological characteristics of natural and artificial 3D structures.</p>
<p>The ITA parameters are remarkably conserved between two mammalian species and between different bones.</p>
<p>In the TMJ and the mandibular condyle, where conflicting requirements for higher anisotropy and finer network co-exist, the topological level of functional adaptation is preferential, as reflected by co-alignment of planar 3-N nodes.</p>
</sec>
<sec id="S6">
<title>Ethics Statement</title>
<p>The study was approved by Institutional Animal Care and Use Committee at the Weizmann Institute of Science.</p>
</sec>
<sec id="S7" sec-type="author-contributor">
<title>Author Contributions</title>
<p>Design the study&#x02014;YB-Z, NR, RS, and SW. Performed the study&#x02014;YB-Z. Analyzed the results&#x02014;YB-Z, NR, RS, and SW. Wrote the manuscript&#x02014;YB-Z, NR, RS, and SW. YB-Z and NR had equal contribution to the paper.</p>
</sec>
<sec id="S8">
<title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<ack>
<p>We thank Dr. Vlad Brumfeld, Ms. Victoria Tarle, Ms. Hila Chase, and Ms. Maria Pierantoni for their invaluable help in this project. We thank Mr. Shaaz Ghouse, Imperial College London, UK, for kindly providing the 3D-printed honeycomb lattices for validation of the ITA algorithm. This research was supported by the ISRAEL SCIENCE FOUNDATION (grant numbers 29/12 and 875/15). SW holds the Dr. Walter and Dr. Trude Borchardt Professorial Chair in Structural Biology.</p>
</ack>
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