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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2024.1358899</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Detecting centennial changes in the clarity and colour of the Red and Eastern Mediterranean Seas by retracing the &#x201c;Pola&#x201d; expeditions</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Heath</surname>
<given-names>Jonathan R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
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</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Brewin</surname>
<given-names>Robert J. W.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
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<contrib contrib-type="author">
<name>
<surname>Pitarch</surname>
<given-names>Jaime</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
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<contrib contrib-type="author">
<name>
<surname>Raitsos</surname>
<given-names>Dionysios E.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
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<aff id="aff1">
<sup>1</sup>
<institution>Centre for Ecology and Conservation, University of Exeter</institution>, <addr-line>Penryn</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Centre for Geography and Environmental Science, University of Exeter</institution>, <addr-line>Penryn</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Consiglio Nazionale delle Ricerche (CNR), Istituto di Scienze Marine (ISMAR)</institution>, <addr-line>Rome</addr-line>, <country>Italy</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of Biology, National and Kapodistrian University of Athens</institution>, <addr-line>Athens</addr-line>, <country>Greece</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Astrid Bracher, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI), Germany</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Ana B. Ruescas, University of Valencia, Spain</p>
<p>Andrew Banks, Hellenic Centre for Marine Research (HCMR), Greece</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Robert J. W. Brewin, <email xlink:href="mailto:r.brewin@exeter.ac.uk">r.brewin@exeter.ac.uk</email>
</p>
</fn>
<fn fn-type="present-address" id="fn003">
<p>&#x2020;Present address: Jonathan R. Heath, School of Ocean Sciences, Bangor University, Menai Bridge, United Kingdom</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>22</day>
<month>08</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>11</volume>
<elocation-id>1358899</elocation-id>
<history>
<date date-type="received">
<day>20</day>
<month>12</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>07</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Heath, Brewin, Pitarch and Raitsos</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Heath, Brewin, Pitarch and Raitsos</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The world&#x2019;s oceans and seas are changing rapidly due to several natural and anthropogenic reasons. Among these, the largest and likely most threatening to marine life being the climate crisis and rising sea temperatures. Studying the dominant primary producers of most marine ecosystems, phytoplankton, and their response to these alterations is challenging, yet essential due to the critical role phytoplankton play in both the oceans and wider biosphere. Satellites are a crucial tool used to study phytoplankton but lack the timespan needed to accurately observe abundance patterns in response to climate change. Historical oceanographic data are increasingly being used to understand changes in the abundance of phytoplankton over the last century. Here, we retrace Secchi depth and Forel-Ule colour scale surveys performed during the &#x201c;Pola&#x201d; expeditions between 1890-1898 using contemporary satellite data, to assess changes in water colour and clarity (and by extension phytoplankton abundance) in the Red Sea and the Eastern Mediterranean Sea over the past century. The results show a significant greening of both regions investigated as well as a decrease in water clarity. The Red Sea Forel-Ule colour increased by 0.83 (&#xb1; 0.08) with an average decrease in Secchi depth of 5.07 m (&#xb1; 0.44). The Forel-Ule colour in the Eastern Mediterranean increased by 0.50 (&#xb1; 0.07) and the historic Secchi depth readings were an average of 8.85 m (&#xb1; 0.47) deeper than present day. Changes in Secchi depth between periods were greater than that which may have been caused by differences in the size of the Secchi disk used on the &#x201c;Pola&#x201d; expeditions, estimated using traditional Secchi depth theory. There was no clear change in seasonality of phytoplankton abundance and blooms, although winter months saw many of the largest changes in both measured variables. We discuss potential drivers for this change and the challenges and limitations of combining historical and modern datasets of water clarity and colour.</p>
</abstract>
<kwd-group>
<kwd>phytoplankton</kwd>
<kwd>Forel-Ule colour scale</kwd>
<kwd>Secchi disk</kwd>
<kwd>ocean colour</kwd>
<kwd>climate change</kwd>
</kwd-group>
<contract-num rid="cn001">MR/V022792/1</contract-num>
<contract-sponsor id="cn001">UK Research and Innovation<named-content content-type="fundref-id">10.13039/100014013</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">Gordon and Betty Moore Foundation<named-content content-type="fundref-id">10.13039/100000936</named-content>
</contract-sponsor>
<counts>
<fig-count count="5"/>
<table-count count="3"/>
<equation-count count="5"/>
<ref-count count="84"/>
<page-count count="15"/>
<word-count count="8552"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Ocean Observation</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Phytoplankton play a crucial role in both the marine environment and the wider biosphere. They contribute to approximately half of global organic net carbon uptake and oxygen production through photosynthesis and are essential for supporting marine life and fisheries (<xref ref-type="bibr" rid="B20">Field et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B16">Chassot et&#xa0;al., 2010</xref>). Climate change poses a significant threat to life on Earth and has wide ranging impacts in the marine environment (<xref ref-type="bibr" rid="B18">Doney et&#xa0;al., 2012</xref>). Human-induced greenhouse gases have been linked to increasing sea surface temperatures and acidity, expansion of oxygen minimum zones and increasing stratification, severely affecting marine life (<xref ref-type="bibr" rid="B29">IPCC, 2019</xref>). These changes are projected to continue through the 21<sup>st</sup> century, with further impacts on marine biomass and the global water cycle (<xref ref-type="bibr" rid="B79">Wilson et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B11">Bryndum-Buchholz et&#xa0;al., 2019</xref>). Climate change can affect phytoplankton in numerous ways. For example, through changes in the timing and magnitude of spring phytoplankton blooms, shifts in their community composition, both in terms of species and size structures, and changes in geographical and vertical distribution (<xref ref-type="bibr" rid="B80">Winder and Sommer, 2012</xref>; <xref ref-type="bibr" rid="B8">Brewin et&#xa0;al., 2022</xref>). Recording phytoplankton abundance is crucial for understanding these impacts and their effect on primary production and the marine ecosystem. The total chlorophyll-a concentration (Chl-<italic>a</italic>) is regularly used as an approximation of phytoplankton biomass owing to its ubiquitousness in phytoplankton and that it can be measured in both field and satellite applications (<xref ref-type="bibr" rid="B62">Sathyendranath et&#xa0;al., 2023</xref>).</p>
<p>Despite many studies investigating the impact of climate change on marine phytoplankton (e.g., <xref ref-type="bibr" rid="B19">Falkowski and Wilson, 1992</xref>; <xref ref-type="bibr" rid="B5">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B76">Wernand and van der Woerd, 2010a</xref>; <xref ref-type="bibr" rid="B78">Wernand et&#xa0;al., 2013a</xref>; <xref ref-type="bibr" rid="B26">Henson et&#xa0;al., 2021</xref>) there is little consensus among the results. This lack of agreement is likely attributed to variations in data collection and analysis methodologies, as well as differences in spatial and temporal ranges that can result in certain biases (<xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref>). An essential requirement for the investigation of phytoplankton biomass and productivity in response to climate change is the presence of a dataset with substantial time length. The time span required to accurately separate anthropogenic climate drivers from natural variability is estimated to be over 40 years (<xref ref-type="bibr" rid="B27">Henson et&#xa0;al., 2010</xref>). Although satellites can provide a global dataset of Chl-a measurements, derived from algorithms that relate radiometric measurements to Chl-a empirically or semi-analytically with an uncertainty in the open ocean (relative percentage difference when compared with <italic>in situ</italic> data) of around 30% (<xref ref-type="bibr" rid="B68">Tilstone et&#xa0;al., 2021</xref>), their recent employment renders them insufficient to provide the required temporal coverage (<xref ref-type="bibr" rid="B61">Sathyendranath et&#xa0;al., 2019</xref>). Thus, a combination of contemporary measurements with historical <italic>in-situ</italic> visual measurements, retrieved as a Chl-a proxy from apparatuses such as the Secchi disk, Forel-Ule colour scale or Continuous Plankton Recorder (<xref ref-type="bibr" rid="B58">Raitsos et al., 2013b</xref>; <xref ref-type="bibr" rid="B78">Wernand et&#xa0;al., 2013a</xref>), is needed to create a suitably long time series.</p>
<p>Secchi disk depth and Forel-Ule colour scale are two of the longest oceanographic datasets available, following bathymetry and sea surface temperature (<xref ref-type="bibr" rid="B7">Boyer et&#xa0;al., 2018</xref>). A Secchi disk is (typically) a 30 cm white disk which is lowered into the water and the depth at which the disk is no longer visible is proportional to the water clarity. This measurement is recorded as the Secchi disk depth (<xref ref-type="bibr" rid="B64">Secchi, 1865</xref>; <xref ref-type="bibr" rid="B70">Tyler, 1968</xref>; <xref ref-type="bibr" rid="B73">Wernand, 2010</xref>; <xref ref-type="bibr" rid="B49">Pitarch, 2020</xref>). The Forel-Ule colour scale was devised in the late 19<sup>th</sup> century by Fran&#xe7;ois Forel and amended by Willi Ule (<xref ref-type="bibr" rid="B21">Forel, 1890</xref>; <xref ref-type="bibr" rid="B77">Wernand and van der Woerd, 2010b</xref>). The scale consists of 21 different indexed colours, ranging from blue through green and yellow to brown. The measurement is recorded as the index of the colour in the scale that best matches that of the water. These historical techniques can provide information on many different components of marine waters and provide important biological information such as Chl<italic>-a</italic> concentrations and the depth of the euphotic zone (<xref ref-type="bibr" rid="B34">Lee et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B72">Wang et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B83">Ye and Sun, 2022</xref>). Specifically, Secchi depth and Forel Ule colour data are significant measurements to the oceanographic community, as they are among only a few techniques that have provided data on optical oceanography that is over a century in length. Furthermore, when the concentration of phytoplankton increases in the ocean, the water turns greener and becomes less transparent. Consequently, visual tools like the Secchi disk and Forel Ule colour scale can be used to estimate the concentration of Chl-<italic>a</italic> in the water.</p>
<p>A large amount of work has been performed to interrogate the effectiveness of these historical techniques and the robustness of the data obtained, for use in modern studies. Overall, studies agree that Secchi depth is a powerful predictor of Chl<italic>-a</italic> concentration, comparable to <italic>in-situ</italic> or satellite derived estimates (<xref ref-type="bibr" rid="B6">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B34">Lee et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref>). This is particularly true in open-ocean waters where optical variability is controlled principally by phytoplankton and its covarying material (<xref ref-type="bibr" rid="B41">Morel and Prieur, 1977</xref>). However, in more optically complex waters, optical variability is controlled by a variety of components that do not always covary in a predictable manner, such that the relationship between Secchi depth and Chl-<italic>a</italic> becomes more complex. The Forel-Ule colour scale has been examined spectrally and shown to have sufficient variation for capturing seasonal cycles at global scales (<xref ref-type="bibr" rid="B77">Wernand and van der Woerd, 2010b</xref>; <xref ref-type="bibr" rid="B42">Novoa et&#xa0;al., 2013</xref>), although the introduction of a value of zero for the clearest open oceans such as oligotrophic ocean gyres has been suggested (<xref ref-type="bibr" rid="B51">Pitarch et&#xa0;al., 2019a</xref>). This scale is also shown to be closely related to Chl-<italic>a</italic>, for all but the highest values and most complex waters (<xref ref-type="bibr" rid="B51">Pitarch et&#xa0;al., 2019a</xref>). These historical variables can be estimated using modern satellite-derived products with a high degree of confidence (uncertainty in Secchi depth of ~20% and Forel-Ule&lt;1 for the dimensionless scale unit) providing a means to bridge historic and modern data (<xref ref-type="bibr" rid="B35">Lee et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B51">Pitarch et&#xa0;al., 2019a</xref>; <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref>). Together, the different methods provide a crucial, yet currently underutilised, tool for long term oceanographic studies.</p>
<p>Most studies that have used these data have focused on large spatial scales, often encompassing the entire global oceans (<xref ref-type="bibr" rid="B5">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B78">Wernand et&#xa0;al., 2013a</xref>), reporting unclear trends, or differing localised trends within the global trend. This study aims to investigate changes over a smaller spatial scale, aiming to determine clearer local trends in well-sampled seas. The Eastern Mediterranean and Red Sea were two of the first marine regions to be systematically sampled during the 1890s by the Austro-Hungarian &#x201c;Pola&#x201d; expeditions (<xref ref-type="bibr" rid="B38">Luksch, 1901</xref>; <xref ref-type="bibr" rid="B73">Wernand, 2010</xref>). These marginal seas have warmed at a rapid rate during the last few decades (<xref ref-type="bibr" rid="B44">Nykjaer, 2009</xref>; <xref ref-type="bibr" rid="B14">Cantin et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B54">Raitsos et&#xa0;al., 2010</xref>, <xref ref-type="bibr" rid="B56">2011</xref>; <xref ref-type="bibr" rid="B67">Sisma-Ventura et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B15">Chaidez et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B40">Mohamed et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B45">Pastor et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B47">Pisano et&#xa0;al., 2020</xref>), however, there is limited work performed on trends in phytoplankton abundance since the 19<sup>th</sup> century, widely used as the start of anthropogenic climate change. This work therefore provides an important opportunity to investigate potential changes to the base of these ecosystems over the last 120 years.</p>
<p>In this work, we compare the large historic dataset of Secchi depth and Forel-Ule measurements collected in the 1890s on the Austro-Hungarian &#x201c;Pola&#x201d; expeditions, with modern measurements derived from remotely sensed satellite data. To minimise differences between the two datasets and optimise data utilisation, samples are matched in space and season. This dataset is used to answer the following two questions: 1) Has the clarity and colour of the water changed in the Eastern Mediterranean and Red Sea over the past century? And 2) Are there any distinct spatial and seasonal shifts in the clarity and colour of these marginal seas?</p>
</sec>
<sec id="s2">
<title>Methods</title>
<sec id="s2_1">
<title>Study region</title>
<p>The Red Sea is an elongated basin connected to the open ocean at its southern point, through the Strait of Bab-el-Mandeb, interacting with the Gulf of Aden where seasonal water exchange occurs (<xref ref-type="bibr" rid="B82">Yao et&#xa0;al., 2014</xref>). The Red Sea experiences strong stratification in the hot summer months and undergoes increased vertical mixing during the winter months. This change in nutrient availability is a key driver in the seasonal cycles of phytoplankton (<xref ref-type="bibr" rid="B57">Raitsos et&#xa0;al., 2013a</xref>). Despite its ecological significance and the presence of threatened habitats and species, the Red Sea remains a largely understudied region of the world&#x2019;s oceans due to challenging environmental and political conditions (<xref ref-type="bibr" rid="B4">Berumen et&#xa0;al., 2013</xref>). The Eastern Mediterranean is a highly oligotrophic region, showcasing the lowest Chl-<italic>a</italic> concentrations recorded within the Mediterranean Sea (<xref ref-type="bibr" rid="B65">Simboura et&#xa0;al., 2019</xref>). Regardless of its oligotrophic nature, the area is characterized by a high level of species richness and habitat diversity, particularly in the Aegean Sea. Similar to the Red Sea, the seasonal primary productivity cycle is driven by the deepening of the mixed layer depth during winter, bringing nutrients upwards from deeper water into the sunlit layer (<xref ref-type="bibr" rid="B65">Simboura et&#xa0;al., 2019</xref>). Both these regions are facing many new and historic anthropogenic pressures, such as ship traffic, large coastal settlements and pollutants (<xref ref-type="bibr" rid="B1">Alahmadi et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B65">Simboura et&#xa0;al., 2019</xref>).</p>
<p>Measurements (both <italic>in situ</italic> and satellite) were collected from locations across the Eastern Mediterranean and Red Seas, ranging from the Ionian Sea and the coast of Salento to the southern end of the Red Sea (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>A map of all sample sites (black dots) included in the historic dataset, covering the Red Sea and Eastern Mediterranean.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1358899-g001.tif"/>
</fig>
</sec>
<sec id="s2_2">
<title>Data sources</title>
<p>The historical dataset was collected aboard the navy transport vessel &#x201c;Pola&#x201d; during its cruises around the Eastern Mediterranean and Red Sea. This expedition was organised as an alternative to a circumnavigation and sampling from a range of waters, to instead focus on the systematic investigation of a particular region (<xref ref-type="bibr" rid="B63">Schefbeck, 1996</xref>). The ship was equipped with state-of-the-art survey equipment with scientists from the Viennese Academy of Sciences onboard, leading multiple oceanographic cruises in the waters of the Eastern Mediterranean between 1890 and 1894. However, following the success of these cruises, the area was expanded to include the Red Sea which was sampled during the years 1895-1898. The ship sampled a range of different oceanographic variables from depth soundings to isotherm and isohaline charts, as well as dredging samples of deep-sea life. The data used for this study were recorded by Josef Luksch, a marine physicist on board the expeditions. The methodology used for obtaining the Secchi Depth differed from the modern standardised method and instrument as standardisation didn&#x2019;t occur until decades after the Pola cruises. As such, the Secchi depths were recorded using a slightly larger disk of 45 cm diameter (with occasional use of a 2 m disk) deployed from the shady side of the ship. To measure ocean colour a scale of coloured liquid vials was created, ranging from 0 to 11, and the water colour was compared to these coloured vials. The recorded vial colour measurements were later compiled and digitised, and Forel-Ule colour values were estimated from the recorded vial numbers by Marcel Wernand. The final dataset covers the period 1890-1898 and comprises the translated Forel-Ule colour scale values, Secchi depth measurements, latitude and longitude coordinates, as well as the year, month, and day for each recorded observation.</p>
<p>Satellite data were obtained from the dataset created by <xref ref-type="bibr" rid="B50">Pitarch et&#xa0;al. (2021)</xref>, containing monthly averaged maps of Forel-Ule scale and Secchi depth from 1998 to 2018 (<xref ref-type="bibr" rid="B52">Pitarch et&#xa0;al., 2019b</xref>). These values were calculated from satellite-obtained remote sensing reflectance with a monthly frequency and projected on a 2.5 arcmin rectangular grid, corresponding to approximately a 4 km spatial resolution at the equator and decreasing towards the poles (<xref ref-type="bibr" rid="B50">Pitarch et&#xa0;al., 2021</xref>). Full technical details about the algorithms used for this retrieval are found in <xref ref-type="bibr" rid="B71">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B35">Lee et&#xa0;al. (2015)</xref>. From this dataset Forel-Ule and Secchi depth values were extracted with the minimum distance to each historical observations&#x2019; coordinates and from the same month. This process aimed to ensure the closest spatial and temporal match possible, thereby minimising any effect this difference may have on the analysis. This matching was performed using a monthly scale instead of a coarser yearly or finer weekly for several reasons. Firstly, due to the lack of uniform sampling across the expedition a finer temporal scale would have resulted in fewer matched observations (as there are more gaps in satellite data due to clouds and swath coverage at weekly scales) making it more challenging to observe clear trends. Secondly, considering the large temporal difference of around 120 years between the datasets, matching them at any finer time scale than monthly is likely to have limited impact on our analysis.</p>
<p>The year 2008 was chosen for the retrieval of remote sensing data, in order to minimize the effect of other large scale global circumstances that are known to influence the regions, such as the El Ni&#xf1;o-Southern Oscillation (ENSO) (<xref ref-type="bibr" rid="B59">Raitsos et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B2">Basterretxea et&#xa0;al., 2018</xref>). The period in which the original dataset was collected (1890-1899) was during a period of strong La Ni&#xf1;a (<xref ref-type="bibr" rid="B81">Wolter and Timlin, 2011</xref>), similar to conditions experienced in 2008 (<ext-link ext-link-type="uri" xlink:href="https://psl.noaa.gov/enso/mei/">https://psl.noaa.gov/enso/mei/</ext-link>). The year 2008 also had very good satellite spatial coverage, with three ocean colour satellites (SeaWiFS, MERIS and MODIS-Aqua) all running (<xref ref-type="bibr" rid="B84">Yu et&#xa0;al., 2023</xref>), maximising potential coverage available in the Ocean Colour Climate Change Initiative (OC-CCI) merged ocean colour product used in <xref ref-type="bibr" rid="B52">Pitarch et&#xa0;al. (2019b)</xref>. As a confirmation step, the analysis was also replicated on other years between 1998 and 2018, to investigate whether any significant trends observed in 2008 persisted across different years. Additionally, a monthly climatology of the data between 1998 and 2018 was created and analysed as an alternative option to using a single year.</p>
<p>Sun elevation is known to affect Secchi disk measurements in blue waters (<xref ref-type="bibr" rid="B49">Pitarch, 2020</xref>), and so to ensure this was not significantly affecting the results, sun angle values were calculated using the time of day and year data. The analysis was repeated by removing any values in blue waters (Forel-Ule&lt; 2) with a sun angle greater than 70 degrees.</p>
</sec>
<sec id="s2_3">
<title>Statistical tests</title>
<p>To investigate the differences between the observed historical measurements and remote sensing estimates the following statistical tests were adopted. These tests are commonly used for comparisons between models and <italic>in-situ</italic> data (<xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref>), and therefore the satellite data were treated as modelled data, and the historical measurements were treated as <italic>in-situ</italic> data.</p>
<p>The absolute Root Mean Square Difference (RMSD) was calculated according to</p>
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<p>where, <italic>X</italic> is the variable and <italic>N</italic> is the number of samples. The superscript <italic>S</italic> denotes the satellite estimated variable and the superscript <italic>M</italic> denotes the measured historical variable.</p>
<p>The bias (&#x3b4;) between the satellite estimation and measurement can be expressed according to</p>
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<p>The absolute centre-pattern (or unbiased) Root Mean Square Difference (RMSD<sub>CP</sub>) was calculated according to</p>
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<p>This describes the difference of the satellite values with respect to the measured values regardless of the average bias (i.e. the standard deviation). It can also be expressed as RMSD<sub>CP</sub> = (RMSD<sup>2</sup> &#x2212; &#x3b4;<sup>2</sup>)<sup>0.5</sup>.</p>
<p>These statistical tests (<xref ref-type="disp-formula" rid="eq1">Equations 1</xref>&#x2013;<xref ref-type="disp-formula" rid="eq3">3</xref>) represent the difference between the two means (&#x3b4;) and the differences in variability between the two distributions (RMSD<sub>CP</sub>). Together, they provide substantial insights into the similarities between the two distributions.</p>
<p>The historic dataset was also checked for any irregular or unexpected results. Given the previously established inverse relationship between Secchi depth and Forel-Ule colour (<xref ref-type="bibr" rid="B74">Wernand, 2011</xref>; <xref ref-type="bibr" rid="B51">Pitarch et&#xa0;al., 2019a</xref>), the presence of this relationship was verified in both the satellite and historical dataset. Paired t-tests were used throughout the study as the datapoints in both the historic and satellite data were obtained from the same location and were being directly compared to one another.</p>
<p>To examine monthly changes in Secchi depth, a climatology was calculated for both datasets, plotting the distribution and mean value for each month. This climatology was created using the total datasets instead of the direct comparisons used for the statistical testing. This was done to avoid losing any historical data from lack of remote sensing data availability. Climatology results are presented in &#x201c;box and whisker&#x201d; diagrams, chosen for their simplicity in representing the properties of the datasets investigated. Statistical tests were also run for each month, calculating &#x3b4;, RMSD, RMSD<sub>CP</sub> values, as well as performing paired t-tests between the historical and satellite observations. T-tests were used as some months have a low number of samples and the t-test is designed for investigating differences in means between small sample sizes. This process was then repeated for the Forel-Ule colour scale.</p>
<p>Spatial differences were investigated by dividing the datapoints between the Red Sea and the Mediterranean Sea. Any data point recorded at a latitude greater than 31.26&#xb0; North was treated as being in the Mediterranean Sea as this is the northernmost point of the Suez Canal, and those at a latitude lower than 29.9&#xb0; North were treated as being in the Red Sea as this is the southern tip of the Suez Canal. Datapoints within the narrow Suez Canal were removed from the analysis due to a lack of satellite coverage (<italic>n</italic> = 26). The distribution of values was plotted on box plots along with the mean value. The statistical values &#x3b4;, RMSD, RMSD<sub>CP</sub> were then calculated for each location for both Secchi depth and Forel-Ule scale, alongside paired t-tests. To test the effectiveness of the dataset in describing spatial patterns within the study area, spatially interpolated plots of the data were created (see <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figures S1, S2</bold>
</xref>).</p>
</sec>
<sec id="s2_4">
<title>Analysis of uncertainty</title>
<p>To compute uncertainties in the differences in Secchi depth and Forel-Ule colour between the two historical periods, we first require estimates of uncertainty in the individual data points. Not a trivial task, but we could make some basic decisions on this. For the <italic>in-situ</italic> data (historical), we can estimate uncertainty based on our current understanding of uncertainty when collecting data at the same location by multiple individuals.</p>
<p>- For <italic>in-situ</italic> Secchi depth measurements, we used an uncertainty of 10%. This is based on the average percent deviation among individuals collecting data at locations at a series of stations in the Atlantic Ocean (see Section 2.3.2 of <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref>). This relative error was converted to an absolute error for each <italic>in-situ</italic> measurement.</p>
<p>- For <italic>in-situ</italic> Forel-Ule colour measurements, we used an absolute uncertainty of 1.0 (scale unit). This was based on typical uncertainties in Forel-Ule colour reported in <xref ref-type="bibr" rid="B12">Burggraaff et&#xa0;al. (2021)</xref>. Though <xref ref-type="bibr" rid="B12">Burggraaff et&#xa0;al. (2021)</xref> report uncertainties can be higher than 1.0, this value seems reasonable considering studies quantifying standard deviations in Forel-Ule colour among individuals collecting data at a set location in the ocean, typically report lower values of around 0.5 (<xref ref-type="bibr" rid="B77">Wernand and van der Woerd, 2010b</xref>; <xref ref-type="bibr" rid="B10">Brewin et&#xa0;al., 2023b</xref>).</p>
<p>For the modern satellite data, we can estimate uncertainty based on satellite validation studies.</p>
<p>- For satellite Secchi depth measurements, we used an uncertainty of 19.3%. This was based on a validation of the Secchi depth algorithm used by <xref ref-type="bibr" rid="B50">Pitarch et&#xa0;al. (2021)</xref> in <xref ref-type="bibr" rid="B35">Lee et&#xa0;al. (2015)</xref>. This relative error was converted to an absolute error for each satellite Secchi depth measurement.</p>
<p>- For satellite Forel-Ule colour measurements, we used an uncertainty of 0.81. This value (0.81) was derived from the root-mean-square-deviation in a comparison of remote-sensing reflectance-based estimates of Forel-Ule colour (using the same method of <xref ref-type="bibr" rid="B71">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B43">Novoa et&#xa0;al. (2014)</xref>) with <italic>in-situ</italic> data in the Atlantic. Specifically, we computed this as the square root of the sum of the squared bias (-0.38) and unbiased- root-mean-square-deviation (0.71), reported in Figure&#xa0;7A of <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al. (2023)</xref>.</p>
<p>Making these assumptions, we computed the absolute uncertainties for each data point. We then estimated the absolute uncertainty in the difference (<inline-formula>
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<p>Given the uncertainties in the differences (<inline-formula>
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</mml:math>
</disp-formula>
<p>
<xref ref-type="disp-formula" rid="eq4">Equations 4</xref> and <xref ref-type="disp-formula" rid="eq5">5</xref> were used to estimate the uncertainty (<inline-formula>
<mml:math display="inline" id="im6">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3f5;</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>) in the mean differences between the two historical periods, for the two variables (Secchi depth and Forel-Ule colour). It is important to note that this approach assumes that the uncertainties associated with each data point are independent and normally distributed.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Suitability of data</title>
<p>The &#x3b4;, RMSD and RMSD<sub>CP</sub> values for Forel-Ule and Secchi depth data were calculated for each year (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>) to test whether results from the year 2008 differed from other years (1998-2018). Any value outside the range of 1<sup>st</sup> quartile - 1.5IQR to the 3<sup>rd</sup> quartile + 1.5IQR was treated as an outlier. For both Forel-Ule and Secchi depth the result for the year 2008 fall within this range (Secchi depth: 1<sup>st</sup> quartile = -7.495, median = -7.090, 3<sup>rd</sup> quartile = -6.611, IQR = 0.884; Forel-Ule: 1<sup>st</sup> quartile = 0.489, median = 0.564, 3<sup>rd</sup> quartile = 0.661, IQR = 0.171). Overall, the &#x3b4; results are tightly distributed suggesting that the results from the comparison were not sensitive to the selection of reference year (2008) from other years during the recent period (1998-2018). This analysis also shows that the climatology does not differ from the year selected for analysis. Filtered data (removing any values with a sun angle greater than 70 degrees and Forel-Ule&lt; 2) also showed similar trends (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>The results of analysis on each year of satellite data, showing the &#x3b4;, RMSD and RMSD<sub>CP</sub> for both Secchi depth and the Forel-Ule colour scale.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" colspan="3" align="center">Secchi Depth</th>
<th valign="top" colspan="2" align="center"/>
<th valign="top" colspan="4" align="center">Forel-Ule Scale</th>
</tr>
<tr>
<th valign="top" align="center">Year</th>
<th valign="top" align="center">&#x3b4;</th>
<th valign="top" align="center">RMSD</th>
<th valign="top" align="center">RMSD<sub>CP</sub>
</th>
<th valign="top" align="center">Uncertainty in &#x3b4;</th>
<th valign="top" align="center">&#x3b4;</th>
<th valign="top" align="center">RMSD</th>
<th valign="top" align="center">RMSD<sub>CP</sub>
</th>
<th valign="top" align="center">Uncertainty in &#x3b4;</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">1998</td>
<td valign="top" align="center">-6.77</td>
<td valign="top" align="center">9.62</td>
<td valign="top" align="center">6.83</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.49</td>
<td valign="top" align="center">1.13</td>
<td valign="top" align="center">1.02</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">1999</td>
<td valign="top" align="center">-6.01</td>
<td valign="top" align="center">9.16</td>
<td valign="top" align="center">6.91</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.40</td>
<td valign="top" align="center">1.09</td>
<td valign="top" align="center">1.01</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2000</td>
<td valign="top" align="center">-7.60</td>
<td valign="top" align="center">10.09</td>
<td valign="top" align="center">6.63</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.60</td>
<td valign="top" align="center">1.22</td>
<td valign="top" align="center">1.07</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2001</td>
<td valign="top" align="center">-6.22</td>
<td valign="top" align="center">9.27</td>
<td valign="top" align="center">6.87</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.49</td>
<td valign="top" align="center">1.14</td>
<td valign="top" align="center">1.03</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2002</td>
<td valign="top" align="center">-7.36</td>
<td valign="top" align="center">10.30</td>
<td valign="top" align="center">7.21</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.66</td>
<td valign="top" align="center">1.33</td>
<td valign="top" align="center">1.16</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2003</td>
<td valign="top" align="center">-7.65</td>
<td valign="top" align="center">10.01</td>
<td valign="top" align="center">6.46</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">0.70</td>
<td valign="top" align="center">1.31</td>
<td valign="top" align="center">1.11</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2004</td>
<td valign="top" align="center">-7.09</td>
<td valign="top" align="center">9.71</td>
<td valign="top" align="center">6.63</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.68</td>
<td valign="top" align="center">1.33</td>
<td valign="top" align="center">1.14</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2005</td>
<td valign="top" align="center">-7.35</td>
<td valign="top" align="center">9.87</td>
<td valign="top" align="center">6.58</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.73</td>
<td valign="top" align="center">1.34</td>
<td valign="top" align="center">1.12</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2006</td>
<td valign="top" align="center">-7.63</td>
<td valign="top" align="center">10.35</td>
<td valign="top" align="center">6.99</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">0.64</td>
<td valign="top" align="center">1.25</td>
<td valign="top" align="center">1.07</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2007</td>
<td valign="top" align="center">-8.01</td>
<td valign="top" align="center">10.34</td>
<td valign="top" align="center">6.53</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">0.78</td>
<td valign="top" align="center">1.40</td>
<td valign="top" align="center">1.16</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2008</td>
<td valign="top" align="center">-7.50</td>
<td valign="top" align="center">10.13</td>
<td valign="top" align="center">6.82</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.63</td>
<td valign="top" align="center">1.29</td>
<td valign="top" align="center">1.12</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">Filtered</td>
<td valign="top" align="center">-8.26</td>
<td valign="top" align="center">10.87</td>
<td valign="top" align="center">7.06</td>
<td valign="top" align="center">0.39</td>
<td valign="top" align="center">0.58</td>
<td valign="top" align="center">1.28</td>
<td valign="top" align="center">1.14</td>
<td valign="top" align="center">0.06</td>
</tr>
<tr>
<td valign="top" align="center">2009</td>
<td valign="top" align="center">-6.90</td>
<td valign="top" align="center">9.77</td>
<td valign="top" align="center">6.91</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.68</td>
<td valign="top" align="center">1.31</td>
<td valign="top" align="center">1.12</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2010</td>
<td valign="top" align="center">-5.84</td>
<td valign="top" align="center">9.30</td>
<td valign="top" align="center">7.24</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.53</td>
<td valign="top" align="center">1.26</td>
<td valign="top" align="center">1.14</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2011</td>
<td valign="top" align="center">-6.57</td>
<td valign="top" align="center">9.31</td>
<td valign="top" align="center">6.59</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.55</td>
<td valign="top" align="center">1.23</td>
<td valign="top" align="center">1.09</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2012</td>
<td valign="top" align="center">-7.72</td>
<td valign="top" align="center">10.21</td>
<td valign="top" align="center">6.68</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.62</td>
<td valign="top" align="center">1.30</td>
<td valign="top" align="center">1.14</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2013</td>
<td valign="top" align="center">-6.61</td>
<td valign="top" align="center">9.69</td>
<td valign="top" align="center">7.09</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">1.07</td>
<td valign="top" align="center">0.96</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2014</td>
<td valign="top" align="center">-6.49</td>
<td valign="top" align="center">9.57</td>
<td valign="top" align="center">7.03</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.49</td>
<td valign="top" align="center">1.11</td>
<td valign="top" align="center">1.00</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2015</td>
<td valign="top" align="center">-7.38</td>
<td valign="top" align="center">10.15</td>
<td valign="top" align="center">6.97</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.52</td>
<td valign="top" align="center">1.09</td>
<td valign="top" align="center">0.96</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2016</td>
<td valign="top" align="center">-6.94</td>
<td valign="top" align="center">9.58</td>
<td valign="top" align="center">6.60</td>
<td valign="top" align="center">0.35</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">1.09</td>
<td valign="top" align="center">0.97</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2017</td>
<td valign="top" align="center">-7.25</td>
<td valign="top" align="center">9.97</td>
<td valign="top" align="center">6.85</td>
<td valign="top" align="center">0.34</td>
<td valign="top" align="center">0.56</td>
<td valign="top" align="center">1.12</td>
<td valign="top" align="center">0.97</td>
<td valign="top" align="center">0.05</td>
</tr>
<tr>
<td valign="top" align="center">2018</td>
<td valign="top" align="center">-7.03</td>
<td valign="top" align="center">10.24</td>
<td valign="top" align="center">7.45</td>
<td valign="top" align="center">0.38</td>
<td valign="top" align="center">0.53</td>
<td valign="top" align="center">1.11</td>
<td valign="top" align="center">0.98</td>
<td valign="top" align="center">0.06</td>
</tr>
<tr>
<td valign="top" align="center">Climatology</td>
<td valign="top" align="center">-6.96</td>
<td valign="top" align="center">9.54</td>
<td valign="top" align="center">6.52</td>
<td valign="top" align="center">0.33</td>
<td valign="top" align="center">0.64</td>
<td valign="top" align="center">1.28</td>
<td valign="top" align="center">1.11</td>
<td valign="top" align="center">0.05</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Also included are the results of analysis on the calculated climatology and the chosen 2008 dataset with data affected by sun angle removed (denoted by row after 2008 named Filtered).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Spatially interpolated plots of the data (see <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figures S1, S2</bold>
</xref>) revealed the presence of known oceanographic features (oligotrophic and mesotrophic biomes) that were consistent with the 2008 climatology. Some unusual finer scale differences were present in the interpolated products, suggesting the spatial coverage of the data was not well suited to make conclusions at sub-basin scales.</p>
</sec>
<sec id="s3_2">
<title>Total dataset</title>
<p>After removing datapoints from the Suez Canal, a total of 385 historical Secchi Disk measurements and 723 Forel-Ule colour recordings were present, and a total of 643 satellite estimations for each variable. This enabled a total of 343 comparisons for the Secchi Disk data and 643 for the colour scale. Paired t-tests performed for the whole dataset revealed a significant decrease in Secchi depth and an increase in the Forel-Ule between the historic and modern data (Secchi depth: t=-20.38, d.f. = 342, <italic>p</italic>&lt; 0.01, Forel-Ule: t=15.00, df=642, <italic>p</italic>&lt; 0.01). The total bias for Secchi depth was found to be -7.50 m (uncertainty of &#xb1;0.34 m) and the bias for the Forel-Ule scale 0.64 (uncertainty of &#xb1;0.05), suggesting a decrease in Secchi depth of approximately 0.06 m y<sup>-1</sup> and an increase in the Forel-Ule scale of 0.005 y<sup>-1</sup> over the ~123-year period.</p>
<p>Relationships between Secchi depth and Forel-Ule were investigated separately for the historical data and for the satellite data used in this study, and a log-linear model was found to fit the data closest (R<sup>2</sup> = 0.767 for the historical data, R<sup>2</sup> = 0.940 for the satellite dataset, see <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The model fits were broadly consistent (similar parameters) between the two datasets, and consistent with those reported in previous works (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>The relationship between observed Secchi disk and Forel-Ule scale. Boxes in red represent the historic data, and blue represents the satellite derived data. The relationship calculated by <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref> is plotted in black (SD = 36.56FU<sup>-0.61</sup> where SD represents Secchi depth and FU represents the Forel-Ule scale score). This relationship was calculated for Forel-Ule values up to 7 and is plotted for this range. Relationships were calculated for both the historical and satellite data used in this study and are plotted in red and blue respectively.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1358899-g002.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Changes by month</title>
<p>A total of 343 matchups of Secchi Depth were obtained, containing both historical and satellite measurements. Comparisons were possible for every month except May and June due to the lack of historical Secchi depth measurements. The distribution of measurements was uneven throughout the year, with some months having more samples than others (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). The historic Secchi depth measurements were greater for every month measured (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The greatest value was recorded in September, and the highest mean was in August. Overall, the trend across the year is similar between the modern and historical measurements, with lower values observed in the early and late months, and greater values in the late summer and early autumn.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>p &#x2013; values, t &#x2013; score, degrees of freedom, bias, lower and upper 95% confidence interval of the bias, RMSD, RMSD<sub>CP</sub> and uncertainties in the bias calculated for Secchi depths grouped by month.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center">Month</th>
<th valign="top" align="center">p</th>
<th valign="top" align="center">t</th>
<th valign="top" align="center">d.f.</th>
<th valign="top" align="center">&#x3b4;</th>
<th valign="top" align="center">95% CI</th>
<th valign="top" align="center">RMSD</th>
<th valign="top" align="center">RMSD<sub>CP</sub>
</th>
<th valign="top" align="center">Uncertainty in &#x3b4;</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">Jan</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-7.80</td>
<td valign="top" align="center">11</td>
<td valign="top" align="center">-11.46</td>
<td valign="top" align="center">[-8.22, -14.69]</td>
<td valign="top" align="center">12.45</td>
<td valign="top" align="center">4.87</td>
<td valign="top" align="center">1.24</td>
</tr>
<tr>
<td valign="top" align="center">Feb</td>
<td valign="top" align="center">0.034</td>
<td valign="top" align="center">-2.32</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">-2.96</td>
<td valign="top" align="center">[-0.25, -5.67]</td>
<td valign="top" align="center">5.91</td>
<td valign="top" align="center">5.11</td>
<td valign="top" align="center">1.00</td>
</tr>
<tr>
<td valign="top" align="center">Mar</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-4.21</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">-10.73</td>
<td valign="top" align="center">[-4.50, -16.96]</td>
<td valign="top" align="center">12.41</td>
<td valign="top" align="center">6.24</td>
<td valign="top" align="center">1.83</td>
</tr>
<tr>
<td valign="top" align="center">Apr</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-4.58</td>
<td valign="top" align="center">21</td>
<td valign="top" align="center">-4.31</td>
<td valign="top" align="center">[-2.35, -6.26]</td>
<td valign="top" align="center">6.09</td>
<td valign="top" align="center">4.31</td>
<td valign="top" align="center">0.99</td>
</tr>
<tr>
<td valign="top" align="center">May</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td valign="top" align="center">Jun</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td valign="top" align="center">Jul</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-7.26</td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">-7.38</td>
<td valign="top" align="center">[-5.29, -9.47]</td>
<td valign="top" align="center">9.02</td>
<td valign="top" align="center">5.19</td>
<td valign="top" align="center">1.34</td>
</tr>
<tr>
<td valign="top" align="center">Aug</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-15.31</td>
<td valign="top" align="center">86</td>
<td valign="top" align="center">-9.36</td>
<td valign="top" align="center">[-8.15, -10.58]</td>
<td valign="top" align="center">10.94</td>
<td valign="top" align="center">5.67</td>
<td valign="top" align="center">0.76</td>
</tr>
<tr>
<td valign="top" align="center">Sep</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-12.44</td>
<td valign="top" align="center">104</td>
<td valign="top" align="center">-8.77</td>
<td valign="top" align="center">[-7.37, -10.17]</td>
<td valign="top" align="center">11.34</td>
<td valign="top" align="center">7.19</td>
<td valign="top" align="center">0.67</td>
</tr>
<tr>
<td valign="top" align="center">Oct</td>
<td valign="top" align="center">0.044</td>
<td valign="top" align="center">-2.11</td>
<td valign="top" align="center">29</td>
<td valign="top" align="center">-1.90</td>
<td valign="top" align="center">[-0.06, -3.75]</td>
<td valign="top" align="center">5.22</td>
<td valign="top" align="center">4.86</td>
<td valign="top" align="center">1.00</td>
</tr>
<tr>
<td valign="top" align="center">Nov</td>
<td valign="top" align="center">0.118</td>
<td valign="top" align="center">-1.66</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">-3.39</td>
<td valign="top" align="center">[0.96, -7.74]</td>
<td valign="top" align="center">8.60</td>
<td valign="top" align="center">7.91</td>
<td valign="top" align="center">1.32</td>
</tr>
<tr>
<td valign="top" align="center">Dec</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">-4.45</td>
<td valign="top" align="center">19</td>
<td valign="top" align="center">-8.39</td>
<td valign="top" align="center">[-4.45, -12.34]</td>
<td valign="top" align="center">11.75</td>
<td valign="top" align="center">8.22</td>
<td valign="top" align="center">1.01</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Results were calculated from paired t-test, except the bias, RMSD,RMSD<sub>CP</sub> and uncertainties in the bias. There is a significant difference between the two datasets in every month except November. Negative bias represents a decrease in Secchi depth between the historic and satellite data. NA refers to Not Applicable, d.f represents the number of possible comparisons.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Boxplot comparing Secchi depth seasonal distribution between modern satellite data and <italic>in-situ</italic> historical data. Mean values are plotted as crosses on each box plot, and variations between the mean values are represented by coloured lines matching the box fill. Outliers are represented by empty circles above the limits represented by the lines outside the boxes. Dashed trendlines are drawn for months with no data. The mean and trendline are consistently higher in the historic data than in the satellite estimations.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1358899-g003.tif"/>
</fig>
<p>Paired t-tests were performed between the datasets for each month, as well as &#x3b4;, RMSD and RMSD<sub>CP</sub> calculations (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). There was a significant negative bias in the Secchi depth between the historic and satellite measurements in every month except November, although a decrease was still present. The greatest bias was observed in January, with historic measurements over 10 m deeper on average than the satellite calculated observations. The greatest RMSD<sub>CP</sub> values were during December, meaning that these observations had the highest range (widest distribution).</p>
<p>Of the 749 historical measurements of Forel Ule, 650 satellite retrieved estimates were obtained for the modern era. The monthly distribution of these results across a year are plotted in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>. The distribution of Forel-Ule data was more even across the year than with the Secchi depth data. Over 25 comparisons were feasible for all months except May and June. A similar trend is observed over the year for the two datasets, with the variation plotted revealing the same peaks and troughs over the seasons. The months of May and June were poorly sampled due to a low number of historical measurements (<italic>n</italic> = 4) and no matched satellite sampling (<italic>n</italic> = 0).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>The distribution of Forel-Ule colour measurements grouped by month for both datasets. The means for each box are represented by a black cross, variations between the mean values are represented by coloured lines matching the box fill. The means for the satellite data are higher for every month and the highest mean results are recorded in the winter months, peaking in December. The lowest Forel-Ule values were observed during July and August for both datasets.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1358899-g004.tif"/>
</fig>
<p>Because of the discrete nature of the Forel-Ule scale, and the extreme positive skewness of the values recorded (2.12 and 2.01 for the historic and satellite results respectively), the bias was less distinct over the year than the Secchi disk results. However, there is still a significantly positive difference present for every month compared except March and November (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). The greatest bias was observed in January, with the latter along with April and December displaying a bias exceeding 1, meaning that the satellite retrieved data was on average at least 1 higher in the historical Forel-Ule scale data.</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>p &#x2013; values, t &#x2013; score, degrees of freedom, bias, lower and upper 95% confidence interval of the bias, RMSD, RMSD<sub>CP</sub> and uncertainties in the bias calculated for the Forel-Ule scale grouped by month.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center">Month</th>
<th valign="top" align="center">p</th>
<th valign="top" align="center">t</th>
<th valign="top" align="center">d.f.</th>
<th valign="top" align="center">&#x3b4;</th>
<th valign="top" align="center">95% CI</th>
<th valign="top" align="center">RMSD</th>
<th valign="top" align="center">RMSD<sub>CP</sub>
</th>
<th valign="top" align="center">Uncertainty in &#x3b4;</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">Jan</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">6.44</td>
<td valign="top" align="center">32</td>
<td valign="top" align="center">1.47</td>
<td valign="top" align="center">[1.00, 1.93]</td>
<td valign="top" align="center">1.96</td>
<td valign="top" align="center">1.29</td>
<td valign="top" align="center">0.22</td>
</tr>
<tr>
<td valign="top" align="center">Feb</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">4.74</td>
<td valign="top" align="center">39</td>
<td valign="top" align="center">0.80</td>
<td valign="top" align="center">[0.46, 1.14]</td>
<td valign="top" align="center">1.32</td>
<td valign="top" align="center">1.05</td>
<td valign="top" align="center">0.20</td>
</tr>
<tr>
<td valign="top" align="center">Mar</td>
<td valign="top" align="center">0.07</td>
<td valign="top" align="center">1.91</td>
<td valign="top" align="center">25</td>
<td valign="top" align="center">0.65</td>
<td valign="top" align="center">[-0.05, 1.36]</td>
<td valign="top" align="center">1.83</td>
<td valign="top" align="center">1.71</td>
<td valign="top" align="center">0.26</td>
</tr>
<tr>
<td valign="top" align="center">Apr</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">6.88</td>
<td valign="top" align="center">38</td>
<td valign="top" align="center">1.03</td>
<td valign="top" align="center">[0.72, 1.33]</td>
<td valign="top" align="center">1.38</td>
<td valign="top" align="center">0.92</td>
<td valign="top" align="center">0.20</td>
</tr>
<tr>
<td valign="top" align="center">May</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td valign="top" align="center">Jun</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
<td valign="top" align="center">NA</td>
</tr>
<tr>
<td valign="top" align="center">Jul</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">5.67</td>
<td valign="top" align="center">44</td>
<td valign="top" align="center">0.42</td>
<td valign="top" align="center">[0.27, 0.57]</td>
<td valign="top" align="center">0.65</td>
<td valign="top" align="center">0.49</td>
<td valign="top" align="center">0.19</td>
</tr>
<tr>
<td valign="top" align="center">Aug</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">7.87</td>
<td valign="top" align="center">144</td>
<td valign="top" align="center">0.52</td>
<td valign="top" align="center">[0.39, 0.65]</td>
<td valign="top" align="center">0.94</td>
<td valign="top" align="center">0.79</td>
<td valign="top" align="center">0.11</td>
</tr>
<tr>
<td valign="top" align="center">Sep</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">7.65</td>
<td valign="top" align="center">182</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">[0.36, 0.60]</td>
<td valign="top" align="center">0.98</td>
<td valign="top" align="center">0.85</td>
<td valign="top" align="center">0.10</td>
</tr>
<tr>
<td valign="top" align="center">Oct</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">3.35</td>
<td valign="top" align="center">55</td>
<td valign="top" align="center">0.73</td>
<td valign="top" align="center">[0.29, 1.17]</td>
<td valign="top" align="center">1.78</td>
<td valign="top" align="center">1.62</td>
<td valign="top" align="center">0.18</td>
</tr>
<tr>
<td valign="top" align="center">Nov</td>
<td valign="top" align="center">0.45</td>
<td valign="top" align="center">0.77</td>
<td valign="top" align="center">41</td>
<td valign="top" align="center">0.21</td>
<td valign="top" align="center">[-0.35, 0.78]</td>
<td valign="top" align="center">1.81</td>
<td valign="top" align="center">1.79</td>
<td valign="top" align="center">0.20</td>
</tr>
<tr>
<td valign="top" align="center">Dec</td>
<td valign="top" align="center">&lt;0.01</td>
<td valign="top" align="center">6.18</td>
<td valign="top" align="center">39</td>
<td valign="top" align="center">1.03</td>
<td valign="top" align="center">[0.69, 1.36]</td>
<td valign="top" align="center">1.46</td>
<td valign="top" align="center">1.04</td>
<td valign="top" align="center">0.20</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>d.f. represents the number of possible comparisons.</p>
</fn>
<fn>
<p>Results were calculated from paired t-test, except the bias, RMSD, RMSD<sub>CP</sub> and uncertainty in the bias. A significant difference between the datasets was found for every month except March and November. NA refers to Not Applicable.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Overall, similar trends are seen across the year for both the Secchi depth and Forel-Ule scale across the two datasets, with the highest and lowest values seen in the same months for both satellite and historical data. The trends between the two variables are also similar, with the deepest Secchi depths corresponding to lower values in the Forel-Ule scale, observed in the late summer/early autumn.</p>
</sec>
<sec id="s3_4">
<title>Changes by location</title>
<p>The comparison between historical and satellite data revealed a significant decrease in Secchi depth recorded in both the Mediterranean and the Red Sea between the historic and satellite data (Med: t=-20.59, df=219, <italic>p</italic>&lt; 0.01, paired t-test; Red Sea: t=-8.08, df=122, p&lt;0.01, paired t-test) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). The mean absolute bias value was greater in the Mediterranean (|<italic>&#x3b4;</italic>| = 8.85 m, uncertainty 0.47 m), indicating that, on average, the decrease in Secchi depth was more pronounced in this region than in the Red Sea (|<italic>&#x3b4;</italic>| = 5.07 m, uncertainty 0.44 m), though both regions indicate a significant reduction in Secchi depth, and by proxy, phytoplankton Chl-a concentration. A wide range of bias scores were recorded for both locations, shown in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>, suggesting increases in Secchi depth varied within the two regions (see also <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figures S1, S2</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Boxplots of the distribution of measurements and biases for the two variables. Plots <bold>(A, B)</bold> display the distribution of measurements of Secchi depth and Forel-Ule scale respectively, with the boxplots grouped by location and subdivided by the data source. Plots <bold>(C, D)</bold> represent the distribution of bias scores for Secchi depth and Forel-Ule respectively. Subscript SD indicates the values displayed are calculated for Secchi depth, and subscript FU represents values calculated for the Forel-Ule scale. Across the plots the red diamond represents the mean of values plotted, and crosses plotted outside the boxes represent outliers excluding plot <bold>(B)</bold>. For plot <bold>(B)</bold> points were used to represent outliers, with the size of the point equivalent to the number of points. This was to avoid not representing any data due to the discrete nature of the Forel-Ule scale. Error bars on plots <bold>(C, D)</bold> represent the uncertainty around the bias calculations.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1358899-g005.tif"/>
</fig>
<p>There was a significant increase in the mean Forel-Ule recorded between the two sets of data for both the locations (Med: t=11.23, df=382, <italic>p</italic>&lt; 0.01, paired t-test; Red Sea: t=9.74, df=266, p&lt;0.01, paired t-test). The mean Forel-Ule values for the Mediterranean were 1.39 and 1.89 for the historical and satellite data respectively. In the Red Sea the mean Forel-Ule values were 2.67 and 3.50 for the historic and satellite data. The calculated bias value was greater for the Red Sea (<italic>&#x3b4;</italic> = 0.83, uncertainty &#xb1;0.08) compared to the Mediterranean (<italic>&#x3b4;</italic> = 0.50, uncertainty &#xb1;0.07). The greatest Forel-Ule increase recorded was 10, in the Red Sea, and the greatest decrease in the Forel-Ule scale was -7, in the Mediterranean.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>Overall, and considering our estimates of uncertainty, our results suggest a greening of the Mediterranean and Red Sea, in support of previous results (<xref ref-type="bibr" rid="B78">Wernand et&#xa0;al., 2013a</xref>), and a decrease in water clarity. This greening, although more pronounced in the Red Sea, was present in both regions. The seasonality in both the colour and clarity of the water was relatively consistent between the historical and modern datasets, as was the relationship between Secchi depth and Forel-Ule (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The presence of similar differences between the historical and modern datasets, irrespective of the satellite reference years tested, provides confidence in the veracity of the trends reported.</p>
<sec id="s4_1">
<title>Changes in colour (Forel-Ule)</title>
<p>The increase in the mean Forel-Ule calculated for the Mediterranean in this study is lower than reported previously in <xref ref-type="bibr" rid="B78">Wernand et&#xa0;al. (2013a)</xref>. However, this may be due to the strict spatial data filtering process used in their study (samples within 100 km of the coast were excluded) which also included a low amount of data from intermediate years.</p>
<p>Although the absolute increases for the Forel-Ule scale in both locations are small, they can indicate a large change in Chl-<italic>a</italic>. For open, oligotrophic waters with lower Forel-Ule values there is an exponential relationship between the colour scale and Chl-<italic>a</italic> (<xref ref-type="bibr" rid="B75">Wernand et&#xa0;al., 2013b</xref>; <xref ref-type="bibr" rid="B51">Pitarch et&#xa0;al., 2019a</xref>). Using the equation from <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al. (2023)</xref>, to convert Forel-Ule to Chl-a, the mean Chl-<italic>a</italic> concentration may have increased on average from 0.24 mg m<sup>-3</sup> to 0.34 mg m<sup>-3</sup>. The lack of high Forel-Ule scale values, typically observed in coastal or estuarine regions and shelf seas (<xref ref-type="bibr" rid="B22">Garaba et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B36">Li et&#xa0;al., 2021</xref>), indicate that phytoplankton are likely the dominate factor driving the change in ocean colour and clarity in our dataset. However, further verification is required to ascertain if such a large increase in Chl-a over this period is real.</p>
</sec>
<sec id="s4_2">
<title>Changes in clarity (Secchi depth)</title>
<p>The Secchi depth data broadly supports the trends revealed in the colour scale data. The decrease in water clarity observed in the modern dataset provides further evidence for an increase in optically active components in the water, and, when considered along with the Forel-Ule results, implies an increase in phytoplankton abundance and Chl-<italic>a</italic>. Using a blend of Secchi depth measurements and <italic>in-situ</italic> Chl-<italic>a</italic>, <xref ref-type="bibr" rid="B5">Boyce et&#xa0;al. (2010)</xref> reported a decrease in Chl-<italic>a</italic> in the easternmost Mediterranean Levantine Sea and Northern Red Sea, in contrast to our results, and an increase in the Southern Red Sea and the Aegean Sea. Differences between studies may possibility be caused by differences in the spatial grouping of data, with the <xref ref-type="bibr" rid="B5">Boyce et&#xa0;al. (2010)</xref> study including the Gulf of Aden not sampled in our study, as well as differences in the datasets used (their study did not utilise the historical dataset used here). <xref ref-type="bibr" rid="B5">Boyce et&#xa0;al. (2010)</xref> also applied one blanket relationship between Secchi depth and Chl-<italic>a</italic> for all the world&#x2019;s seas, when this relationship differs between regions. Later work by <xref ref-type="bibr" rid="B6">Boyce et&#xa0;al. (2012)</xref> included Forel-Ule colour scale values, and a larger sample of Secchi depth and Chl-<italic>a</italic> measurements, however, excluded Forel-Ule values below 2 due to the saturation of the scale at this point. This led to the exclusion of a substantial portion of historical data for regions such as the Eastern Mediterranean and Red Sea and so trends were not reported in either region.</p>
</sec>
<sec id="s4_3">
<title>Seasonality</title>
<p>We observed no clear evidence for a change in phytoplankton phenology, with both the historical and satellite data following a similar seasonal trend. Both the Red Sea and Eastern Mediterranean experience the highest phytoplankton and Chl-<italic>a</italic> concentrations between December and April (<xref ref-type="bibr" rid="B23">Gittings et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B60">Salgado-Hernanz et&#xa0;al., 2019</xref>) consistent with the high Forel-Ule values and lower Secchi depths observed in those months. However, the greatest differences between historical and modern datasets were observed in these months, suggesting a possible increase in the magnitude of blooms, disproportionate to the increase seen across the dataset. It is worth considering that studies that have reported a change in timing in phytoplankton blooms report changes in the scale of weeks rather than months (<xref ref-type="bibr" rid="B23">Gittings et&#xa0;al., 2018</xref>) and so any change may potentially be masked by the coarser temporal scale used in this study. Furthermore, our uncertainty analysis does not consider uncertainty in seasonal changes in atmospheric properties that could be influencing atmospheric correction and consequently, satellite estimates of Secchi depth and Forel-Ule colour.</p>
</sec>
<sec id="s4_4">
<title>Spatial differences</title>
<p>Whilst both the Red Sea and Eastern Mediterranean are known to be oligotrophic, the southern Red Sea is characterised by a higher productivity than the northern area, due to the intrusion of nutrient-rich water masses from the Indian Ocean (<xref ref-type="bibr" rid="B59">Raitsos et&#xa0;al., 2015</xref>). Nonetheless, the Secchi depth data from the Mediterranean did include some lower values, suggesting that whilst predominantly unproductive, there are hotspots of productivity. The northern Aegean Sea and southern coastline of the Levantine Basin at the mouth of the Nile Delta are two areas of the Mediterranean sampled that typically have a high Chl-<italic>a</italic> concentration (<xref ref-type="bibr" rid="B69">Tsiaras et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B31">Kotta and Kitsou, 2019</xref>). The changes between the historic and satellite data for both variables show broadly the same trend, however, the decrease in Secchi depth was found to be greater in the Mediterranean than in the Red Sea, whilst the Forel-Ule score increased slightly more in the Red Sea than the Mediterranean (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). Finer spatial scale analysis revealed some spatial differences within the two regions (see <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figures S1, S2</bold>
</xref>) but was limited by lower numbers of observations.</p>
</sec>
<sec id="s4_5">
<title>Potential drivers</title>
<p>Both the Red Sea and Eastern Mediterranean Sea are largely oligotrophic systems, highly stratified with plenty of light, meaning phytoplankton abundance at the surface is limited primarily by the availability of nutrients (<xref ref-type="bibr" rid="B32">Krom et&#xa0;al., 1991</xref>; <xref ref-type="bibr" rid="B57">Raitsos et&#xa0;al., 2013a</xref>), though light limitation can occur during some periods (<xref ref-type="bibr" rid="B3">Bellacicco et&#xa0;al., 2016</xref>). As a result of these conditions, an increase in phytoplankton is often associated with an increase in nutrient availability (<xref ref-type="bibr" rid="B39">Mara&#xf1;&#xf3;n et&#xa0;al., 2018</xref>). This increase in nutrients can come from several sources, including an increased degree of mixing of the water column by physical forcing, enabling access to nutrient-rich deep water, or horizontal advection of coastal nutrients from eddies (<xref ref-type="bibr" rid="B57">Raitsos et&#xa0;al., 2013a</xref>; <xref ref-type="bibr" rid="B55">2017</xref>), or other external inputs on nutrients (<xref ref-type="bibr" rid="B17">Churchill et&#xa0;al., 2014</xref>), for example, from aeolian deposition or increased nitrogen fixation. In the Red Sea, a decrease in wind and wave heights have been reported (<xref ref-type="bibr" rid="B33">Langodan et&#xa0;al., 2017</xref>) as well as increases in temperature (<xref ref-type="bibr" rid="B56">Raitsos et&#xa0;al., 2011</xref>), which are likely to drive further stratification. Thus, increasing vertical mixing is unlikely to be the key driver behind the Forel-Ule increased values in the Red Sea. However, <xref ref-type="bibr" rid="B59">Raitsos et&#xa0;al. (2015)</xref> revealed that ENSO positive phases (and its extreme i.e., El Ni&#xf1;o) lead to an increase in wind-driven advection of fertile waters from the Indian Ocean into the Red Sea, ultimately showing an increase in phytoplankton biomass during positive ENSO years (usually warmer years). In addition, <xref ref-type="bibr" rid="B13">Cai et&#xa0;al. (2014)</xref> reported that greenhouse warming has led to more frequent and abrupt occurrence of extreme El Ni&#xf1;o events. Thus, changes in this climate index could potentially provide an explanation for the increase in phytoplankton abundance observed in this study in the Red Sea. Nonetheless, such links with El Ni&#xf1;o are speculative and require further substantiation, since the data used in this study is not of sufficient temporal resolution to quantify El Ni&#xf1;o related effects.</p>
<p>Another potential mechanism for the increase in nutrient availability in the Eastern Mediterranean is runoff from human activity and coastal settlements and subsequent nutrient enrichment. Additionally, aquaculture in the northern and southern Red Sea has been linked to nutrient enrichment in this area (<xref ref-type="bibr" rid="B37">Loya et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B24">Gokul et&#xa0;al., 2020</xref>), as have untreated effluent discharges due to inefficient or above capacity treatment plants (<xref ref-type="bibr" rid="B30">Jessen et&#xa0;al., 2013</xref>). In nutrient limited systems, this discharge may result in an increase in phytoplankton abundance, and in extreme cases eutrophication. Drivers of this observed change are likely to be similar in the Eastern Mediterranean due to similar oceanographic and nutrient conditions (<xref ref-type="bibr" rid="B66">Siokou-Frangou et&#xa0;al., 2010</xref>). In some areas of the sampled Mediterranean, eutrophication has been reported, primarily in coastal areas close to large urban centres (<xref ref-type="bibr" rid="B46">Pavlidou et&#xa0;al., 2015</xref>).</p>
</sec>
<sec id="s4_6">
<title>Limitations of historical methods</title>
<p>There are limitations in the usage of historic Forel-Ule data. The first is the saturation of the scale at a value of one, which makes it difficult to observe small variations in colour in oligotrophic systems. Recent analysis has recommended the creation and addition of a zero value to the scale (<xref ref-type="bibr" rid="B51">Pitarch et&#xa0;al., 2019a</xref>), enabling better identification of trends even in the bluest waters such as the oligotrophic gyres. This is not possible using historical data as we are limited to what was sampled originally. The second factor is the presence of differences when recording the Forel-Ule colour over a Secchi disk (as is often used in historic or <italic>in-situ</italic> measurements), or against the water column alone, as retrieved from satellites (<xref ref-type="bibr" rid="B48">Pitarch, 2017</xref>). This is not an issue in this study as the original cruise reports describe comparing the coloured solutions directly to the water column, rather than over a Secchi disk. The historical data used here also contains more observations of the Forel-Ule scale than Secchi depth, confirming that the colour scale is likely to have been observed over the water column directly. Recent optical modelling applied to data from the Atlantic Ocean has suggested that most historical Forel-Ule data were likely collected over the water column alone, and not over a Secchi disk (<xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2023</xref>).</p>
<p>There may also be systematic differences in the historical methods used in these studies. The Secchi depth collected by Josef Luksch was collected primarily using a disk of 45 cm, as opposed to the standard 30 cm disk used in modern studies (<xref ref-type="bibr" rid="B73">Wernand, 2010</xref>). The original cruise performed by Secchi examined differences in visibility of disks measuring 43 cm and 237 cm and revealed that larger disks are visible at deeper depths, particularly in clear waters such as in this study (<xref ref-type="bibr" rid="B64">Secchi, 1865</xref>; <xref ref-type="bibr" rid="B49">Pitarch, 2020</xref>). Traditional Secchi depth theory (<xref ref-type="bibr" rid="B53">Preisendorfer, 1986</xref>) includes the influence of disk size on Secchi depth. Using a standard set of parameters as reported by <xref ref-type="bibr" rid="B53">Preisendorfer (1986)</xref>, and for a Secchi depth of 24 m using a 30 cm disk (average Secchi depth of satellite data in this study for the modern period) and assuming a solar zenith angle of 10 degrees and wind speed of 10 ms<sup>-1</sup>, we estimate the Secchi depth to be around 4.2 m deeper using a 45 cm disk (size used on the &#x201c;Pola&#x201d; expeditions). Though significant, and certainly accounting for some of the decreasing Secchi depth trend between period, it does not account for the large differences observed (average of 7.7m +/- 0.34). Furthermore, more recent work has suggested the influence of disk size on Secchi depth can be much smaller than traditional theory suggests (<xref ref-type="bibr" rid="B28">Hou et&#xa0;al., 2007</xref>). Further work evaluating the difference in visibility of Secchi disks of variable sizes is recommended.</p>
</sec>
<sec id="s4_7">
<title>Implications of this study</title>
<p>This study is unique in analysing direct pairs of observations from historic and satellite estimations, by &#x2018;resampling&#x2019; the original locations sampled by Luksch in the 19<sup>th</sup> century. Whilst this means that less data were used than in studies using spatially grouped means (<xref ref-type="bibr" rid="B5">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B75">Wernand et&#xa0;al., 2013b</xref>) it allowed a more direct comparison by minimising spatial and temporal differences in sampling between historical and modern data. Overall, our analysis provides some evidence for an increase in phytoplankton abundance over the past century in the Red and Eastern Mediterranean Seas.</p>
<p>The observed decrease in Secchi depth has further ecological implications beyond an increase in phytoplankton. This decrease in Secchi depth would mean that light is more concentrated in the upper layer, which may have caused warming and an increase of stratification. Lower water transparency has direct implications for benthic habitats through changes in light availability for photosynthesis. The bodies of water examined contain coral reef systems (<xref ref-type="bibr" rid="B4">Berumen et&#xa0;al., 2013</xref>) and seagrass beds which may have been impacted (<xref ref-type="bibr" rid="B65">Simboura et&#xa0;al., 2019</xref>). Decreasing light availability, in conjunction with other stressors, such as rising temperatures or anthropogenic disturbances, may inhibit the growth and detrimentally affect the health of these benthic ecosystems (<xref ref-type="bibr" rid="B25">Grech et&#xa0;al., 2012</xref>).</p>
<p>Our results suggest changes may have happened to the baseline of the ecosystems of the Red Sea and Eastern Mediterranean over the past century through an increase in productivity. Increased sampling is required to continue monitoring these baselines and allow for effective management decisions to limit negative ecosystem impacts. Satellite sensing is believed to be the future for monitoring large bodies of water, yet studies such as this prove the need for further utilisation of the wealth of historical oceanographic data buried in archives. As such, the discovery, digitisation, and analysis of these historical datasets, alongside the evaluation of their power to estimate crucial variables such as Chl-<italic>a</italic>, including rigorous estimates of measurement uncertainty, may help understand long-term anthropogenic impacts on our seas.</p>
</sec>
</sec>
</body>
<back>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>JH: Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. RB: Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing &#x2013; review &amp; editing. JP: Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Resources, Supervision, Writing &#x2013; review &amp; editing. DR: Funding acquisition, Supervision, Writing &#x2013; review &amp; editing.</p>
</sec>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. RB is supported by a UKRI Future Leader Fellowship (MR/V022792/1) and by the the Gordon and Betty Moore Foundation (GBMF11171). JP acknowledges funding by the European Union through the NextGenerationEU Program, Project IR0000032 &#x2013; ITINERIS - Italian Integrated Environmental Research Infrastructures System - CUP B53C22002150006. DR acknowledges funding by the European Union HORIZON EUROPE program ACTNOW: Advancing understanding of Cumulative Impacts on European marine biodiversity, ecosystem functions and services for human wellbeing (Grant no. 101060072).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We acknowledge all those involved in the collection of data used in this study, particularly those involved in the &#x201c;Pola&#x201d; expeditions in the late 19<sup>th</sup> century. We are strongly indebted to early work by Marcel Wernand who pioneered the mining of these historical data allowing us to perform this analysis. This work was supported by a MSci project in Marine Biology at the University of Exeter, Penryn, Cornwall, and we acknowledge all the staff and students on that programme who helped make this work possible. We thank Dionysia Rigatou for reading an early version of our manuscript and providing useful textual edits. We thank the reviewers for insightful comments that helped us improve our paper.</p>
</ack>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s9" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s10" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2024.1358899/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2024.1358899/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet1.pdf" id="SM1" mimetype="application/pdf"/>
<supplementary-material xlink:href="DataSheet2.csv" id="SM2" mimetype="text/csv"/>
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