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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2024.1214449</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The effects of atmospheric nitrogen deposition in coral-algal phase shifts on remote coral reefs</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Fu</surname>
<given-names>Yichen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2261526"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Chen</surname>
<given-names>Xiaoyan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2265868"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Yuchen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Yuxiao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/resources/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yu</surname>
<given-names>Kefu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/406117"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
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</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University</institution>, <addr-line>Nanning</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Hajime Kayanne, The University of Tokyo, Japan</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Thamasak Yeemin, Ramkhamhaeng University, Thailand</p>
<p>Brian Lapointe, Florida Atlantic University, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Xiaoyan Chen, <email xlink:href="mailto:xychen@gxu.edu.cn">xychen@gxu.edu.cn</email>; Kefu Yu, <email xlink:href="mailto:kefuyu@scsio.ac.cn">kefuyu@scsio.ac.cn</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>15</day>
<month>02</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>11</volume>
<elocation-id>1214449</elocation-id>
<history>
<date date-type="received">
<day>02</day>
<month>05</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>23</day>
<month>01</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Fu, Chen, Liu, Li and Yu</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Fu, Chen, Liu, Li and Yu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Remote seawater has been considered a potential refuge for corals in the face of anthropogenic disturbances. However, these remote areas may receive increased atmospheric N deposition, and the ecological consequences remain unclear. This field survey revealed coral-algal phase shifts in the mid-north of the South China Sea. These shifts were observed in 44%, 13.6%, and 26.5% of the sampled reef sites at depths of 1-4&#xa0;m, 5-8&#xa0;m, and 10-15&#xa0;m, respectively. Over 50% of sections in the deeper depths hosted fewer corals compared to shallower areas, coinciding with a higher abundance of macroalgae in the deeper layers. Furthermore, based on long-term observation of atmospheric N flux, laboratory experiments were conducted to explore the cause of coral declines. The results indicate that N supply efficiently promoted macroalgae growth. The saturation of N absorption by macroalgae occurred within 2 weeks, leading to nutrient accumulation in seawater, especially nitrate, which had a direct impact on corals. While moderate N fluxes appeared to mitigate coral bleaching, high N fluxes, even with a balanced P supply or medium level of nutrients with an imbalanced N/P ratio, can both increase the susceptibility of corals to heat bleaching. This study explains the coral-algal phase shift in remote and relatively deep seawater and improves understanding of the cause-and-effect relationship between atmospheric N deposition and coral reef decline.</p>
</abstract>
<kwd-group>
<kwd>atmospheric N</kwd>
<kwd>coral reefs</kwd>
<kwd>coral-algal symbiont</kwd>
<kwd>macroalgae</kwd>
<kwd>coral bleaching</kwd>
<kwd>South China Sea</kwd>
</kwd-group>
<counts>
<fig-count count="11"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="75"/>
<page-count count="16"/>
<word-count count="8655"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Coral Reef Research</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Coral reef ecosystems have extremely high biodiversity (<xref ref-type="bibr" rid="B73">Zhao et&#xa0;al., 2006</xref>). However, in recent decades, many of these ecosystems have experienced significant declines due to climate warming and human disturbances (<xref ref-type="bibr" rid="B23">Gardner et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B5">Bellwood et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B71">Yu, 2012</xref>). Remote coral reefs, often considered isolated from coastal human activities, have been thought to potentially serve as refuges for corals (<xref ref-type="bibr" rid="B47">MacDonald et&#xa0;al., 2016</xref>). Nevertheless, a considerable amount of land-derived nutrients has entered the open ocean (<xref ref-type="bibr" rid="B59">Safai et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B14">Dentener et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B30">Kanakidou et&#xa0;al., 2012</xref>). Model estimates suggest that atmospheric N (AN) deposition has doubled over the past century and now accounts for one-third of the external N supply for the open ocean (<xref ref-type="bibr" rid="B15">Duce et&#xa0;al., 2008</xref>). Previous studies have indicated that coral reefs face pressures from AN. Wet deposition of inorganic nitrogen has led to macroalgae enrichment on remote coral reefs near Green Turtle Cay (<xref ref-type="bibr" rid="B1">Barile and Lapointe, 2005</xref>). Overgrowth of macroalgae correlated with AN deposition flux has also been observed in the South China Sea (SCS), and the AN flux could be significant in many coral reefs worldwide (<xref ref-type="bibr" rid="B10">Chen et&#xa0;al., 2019</xref>). However, the cause-and-effect relationship between AN deposition and coral reef decline remains unclear.</p>
<p>Negative effects of nutrient enrichment on corals have been demonstrated in many studies (<xref ref-type="bibr" rid="B66">Tomascik and Sander, 1985</xref>; <xref ref-type="bibr" rid="B4">Bell, 1992</xref>; <xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B39">Lapointe et&#xa0;al., 2019</xref>). An increase in NO<sub>3</sub>
<sup>-</sup> concentration, from 0.41 to 5.13 &#xb5;M, reduced coral growth rate by 53% within 1 month (<xref ref-type="bibr" rid="B56">Renegar and Riegl, 2005</xref>). N enrichment (NO<sub>3</sub>
<sup>-</sup>, 6-7 &#xb5;M; NH<sub>4</sub>
<sup>+</sup>, 5-6 &#xb5;M) reduced symbiotic algae density and gross photosynthesis within 6 weeks at normal temperatures in the Mediterranean (<xref ref-type="bibr" rid="B25">Hadjioannou et&#xa0;al., 2019</xref>). In contrast, treatment with dissolved inorganic nitrogen (DIN, 0.36 &#xb5;M) and dissolved inorganic phosphorus (DIP, 0.14 &#xb5;M) for 15 months led to a 50% increase in zooxanthellae density compared to that in lower levels of DIN and DIP (both ~ 0.1 &#xb5;M; <xref ref-type="bibr" rid="B2">Becker et&#xa0;al., 2021</xref>). However, the excess zooxanthellae may affect symbiotic stability, potentially reducing the translocation of organic carbon from the symbiont to the coral host (<xref ref-type="bibr" rid="B13">Cunning and Baker, 2013</xref>; <xref ref-type="bibr" rid="B16">Ezzat et&#xa0;al., 2015</xref>).</p>
<p>The diverse effects of enrichment on corals are likely related to the level, forms, or ratio of nutrient loading. Globally, there are spatial differences in AN deposition flux. More than two-thirds of the world&#x2019;s coral reefs receive medium to high levels of AN fluxes (400-2100 mg N&#xb7;m<sup>-2</sup>&#xb7;year<sup>-1</sup>), e.g., in the regions of Asia, Southeast Asia, East and North Asia, and the U.S. Caribbean islands, while others (Australia and Pacific Ocean) are exposed to much lower amounts (43-280 mg N&#xb7;m<sup>-2</sup>&#xb7;year<sup>-1</sup>; <xref ref-type="bibr" rid="B10">Chen et&#xa0;al., 2019</xref>). Rainwater DIN is usually 55.88 &#xb5;M in the SCS (<xref ref-type="bibr" rid="B12">Cui et&#xa0;al., 2016</xref>). Under extreme conditions, such as dust storms and biomass burning, atmospheric deposition flux can increase tens to hundreds of times beyond the usual levels (<xref ref-type="bibr" rid="B62">Sundarambal et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2012</xref>). Data from the Acid Deposition Monitoring Network in East Asia (EANET) revealed that rainwater DIN reached 7890 &#xb5;M in Kototabang in May, 2015, while it was 277 &#xb5;M in Tanah Rata in June, 2011. These wet deposition fluxes can be estimated to elevate seawater DIN levels by 1.2-30 &#xb5;M after thorough mixing (precipitation, 30&#xa0;mm per day; water depth, 7&#xa0;m). AN has become the primary external N input in the open areas of the SCS (<xref ref-type="bibr" rid="B55">Ren et&#xa0;al., 2017</xref>), and the deposition flux has been increasing (<xref ref-type="bibr" rid="B15">Duce et&#xa0;al., 2008</xref>).</p>
<p>As a considerable amount of AN continuously enters the ocean, the imbalance of N and P supply tends to be exacerbated, especially in the coral reef regions with weak water exchange, such as lagoons, or shallow semi-closed bays. Laboratory studies have suggested that this imbalance in N and P supply, rather than N enrichment, increases the susceptibility of corals to bleaching. This is because imbalanced nutrients induce P starvation of symbiotic algae, reducing coral tolerance to light and heat stress (<xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B58">Rosset et&#xa0;al., 2017</xref>). Field studies have also provided evidence that DIN enrichment exacerbates P limitation, leading to increased stress on corals at the Looe Key reef over three decades (<xref ref-type="bibr" rid="B39">Lapointe et&#xa0;al., 2019</xref>). In 2019, the N/P ratios of macroalgae were more than two-fold higher than in the 1980s, and P limitation was also observed to stress corals at the Belize Barrier Reef (<xref ref-type="bibr" rid="B40">Lapointe et&#xa0;al., 2021</xref>). On the other hand, some areas may receive excessive P supply from sources such as phosphate rock, seabird excrement, or volcanic eruption (<xref ref-type="bibr" rid="B54">Olgun et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B60">Shatova et&#xa0;al., 2017</xref>). P loading can alleviate P limitation for corals, but the combined effects of N and P have also been documented. For example, NH<sub>4</sub>
<sup>+</sup> (8.5 &#xb5;M) and P (2.4 &#xb5;M) treatment reduced the coral growth rate by 50% within 4 weeks, while NH<sub>4</sub>
<sup>+</sup> (9 &#xb5;M) treatment only reduced growth by 8~10% (<xref ref-type="bibr" rid="B20">Ferrier-Pag&#xe8;s et&#xa0;al., 2000</xref>). Moreover, the effects of enrichment may be associated with different forms of nitrogen, with nitrate found to have greater negative effects on corals than ammonium (<xref ref-type="bibr" rid="B74">Zhao et&#xa0;al., 2021</xref>). Further, enrichment not only leads to coral loss but also promotes the growth of coral competitors, such as macroalgae, which can result in coral-algal phase shifts (<xref ref-type="bibr" rid="B38">Lapointe et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B37">Lapointe et&#xa0;al., 2005a</xref>; <xref ref-type="bibr" rid="B36">Lapointe et&#xa0;al., 2005b</xref>). However, the responses of corals or macroalgae to AN and their roles in coral bleaching and coral-algal phase shifts, which are key processes in coral reef ecosystems, are still not well understood.</p>
<p>This study aimed to assess the ecological state of remote coral reefs in the SCS, estimate AN deposition flux into these reefs based on 20 years of observations, and conduct laboratory experiments to investigate how corals and macroalgae respond to different AN deposition scenarios, including variations in AN levels and balanced or imbalanced N and P supplies.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Study area</title>
<p>The study area (15&#xb0;07&#x2032;-17&#xb0;10&#x2032;N, 111&#xb0;-117&#xb0;50&#x2032;E) was situated in the mid-northern SCS. The ecological survey was conducted between May and July, 2015, covering nine islands. These islands encompass four within the Yongle Atoll (Panshiyu, Huaguang, Yuzhuo, and Beijiao), four within the Xuande Atoll in the Xisha Islands (Dongdao, Yongxing, Qilianyu, and Langhua), and one in the Zhongsha Islands (Huangyan; <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). For brevity, the islands are abbreviated as PS, HG, YZ, BJ, DD, YX, QL, LH, and HY, respectively (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). Satellite images of the sampling sites were derived from the Geospatial Data Cloud of the Chinese Academy of Sciences in 2015 (<ext-link ext-link-type="uri" xlink:href="http://www.gscloud.cn">http://www.gscloud.cn</ext-link>). The average annual sea surface temperature (SST) in this region is 27.4&#xb0;C, with variations from 24.7&#xb0;C (December-February) to 30.0&#xb0;C (May-September).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Map of the study area. <bold>(A)</bold> The study coral reefs in nine islands and monitoring stations of atmospheric N. The numbers 1-10 denote the stations, i.e., 1-Da Nang, 2-PhnomPenh, 3-Tanah Rata, 4-Petaling Jaya, 5-Kototabang, 6-Serpong, 7-Jakarta, 8-Bandung, 9-Kuching, and 10-Danum Valley. <bold>(B)</bold> Sampling reef sites. The dots in blue, yellow, and red indicate the sites in water depths of 1-4&#xa0;m, 5-8&#xa0;m, and 10-15&#xa0;m, respectively.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g001.tif"/>
</fig>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Ecological survey on coral reefs</title>
<p>This survey was conducted at 81 reef sites, spanning four habitats (i.e., lower reef slope, upper reef slope, reef flat, and lagoon) and encompassing water depths of 1-4&#xa0;m, 5-8&#xa0;m, and 10-15&#xa0;m (referred to as shallow, middle, and deep layers; <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). The survey utilized the line intercept method recommended by the Australian Institute of Marine Science and the Global Coral Reef Monitoring Network. For each station, data on water depth and GPS coordinates were recorded. Scuba divers then deployed a 50&#xa0;m fiberglass skin gauge along the isobath and employed an Olympus TG&#x2010;3 Zoom digital waterproof camera, capturing continuous vertical videos.</p>
<p>Information on benthic categories was extracted from the videos by referencing literature sources, including <italic>Corals of the World</italic> (<xref ref-type="bibr" rid="B67">Veron, 2000</xref>) and the <italic>Coral Reef Atlas of Xisha Islands</italic> (<xref ref-type="bibr" rid="B27">Huang, 2018</xref>). Live coral cover and macroalgae cover were measured by calculating the fraction of the line&#x2019;s length intercepted by each category, using the formula <inline-formula>
<mml:math display="inline" id="im1">
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mi>X</mml:mi>
<mml:mi>L</mml:mi>
</mml:mfrac>
<mml:mo>&#xd7;</mml:mo>
<mml:mn>100</mml:mn>
<mml:mo>%</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, where <italic>X</italic> is the length of live coral or macroalgae, and <italic>L</italic> is the length of the transect. The ratio of the macroalgae cover to coral cover at each survey site was recorded as the algae-coral ratio. Statistical analyses, one-way ANOVA, and descriptive statistics were performed using SPSS Statistics 22 software for live coral cover, macroalgae cover, and algae-coral ratio. The coral composition data were sourced from <xref ref-type="bibr" rid="B45">Liao (2021)</xref> and are listed in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>.</p>
<p>Following previous conventions (<xref ref-type="bibr" rid="B51">McManus and Polsenberg, 2004</xref>; <xref ref-type="bibr" rid="B7">Bruno et&#xa0;al., 2009</xref>), we defined macroalgae as the &#x201c;larger algal forms with canopy heights usually exceeding 10&#xa0;mm, characterized by greater rigidity and anatomical complexity.&#x201d; We focused on erect calcareous or fleshy frondose species but did not include microalgae, filamentous algae, or crustose algae.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Estimation of AN deposition flux</title>
<p>The N deposition data were derived from the EANET (<ext-link ext-link-type="uri" xlink:href="https://monitoring.eanet.asia/document/public/index">https://monitoring.eanet.asia/document/public/index</ext-link>). EANET has been recording the monthly concentrations of NH<sub>4</sub>
<sup>+</sup> and NO<sub>3</sub>
<sup>-</sup> in rainwater at 31 monitoring stations in East Asia since 2000. Wet deposition samples were collected using wet-only samplers and then stored at 4&#xb0;C. Ion chromatography was the primary analytical method employed for NH<sub>4</sub>
<sup>+</sup> and NO<sub>3</sub>
<sup>-</sup>, with spectrophotometry as an alternative method.</p>
<p>This study analyzed N deposition data from 10 monitoring stations, i.e., Jakarta, Serpong, Kototabang, Bandung, Petaling Jaya, Tanah Rata, Danum Valley, Kuching, Da Nang, and Phnom Penh. These stations are situated upwind of the study region during the summer monsoon season (April-September), and the AN could be transported by southwest monsoon winds into the study region. The analysis of monsoon winds was based on monthly climatological wind data spanning from 1960 to 2015 (<ext-link ext-link-type="uri" xlink:href="https://www.esrl.noaa.gov">https://www.esrl.noaa.gov</ext-link>).</p>
<p>Temporal variations in AN were analyzed using SPSS Statistics 22 and Origin 2021b software. To calculate the AN deposition flux in SCS, we multiplied the NH<sub>4</sub>
<sup>+</sup> and NO<sub>3</sub>
<sup>-</sup> concentrations in the wet deposition by the rainfall recorded at each monitoring station. It was assumed that there was a 30% loss of AN during transport from the stations to the study region, based on previous literature (<xref ref-type="bibr" rid="B33">Kim et&#xa0;al., 2014</xref>).</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Experiment of nitrogen deposition on coral reefs</title>
<p>Five experimental scenarios were designed as below:</p>
<list list-type="simple">
<list-item>
<p>(1) The control treatment: no nitrogen input, with the temperature increasing from 26&#xb0;C to 32&#xb0;C (1&#xb0;C per day) and then maintained at 32&#xb0;C. This treatment aimed to investigate the response of coral reefs to thermal stress in offshore waters without AN deposition. The concentration of DIN and NO<sub>3</sub>
<sup>-</sup> in seawater was 7.15 &#xb5;M and 7.03 &#xb5;M, respectively, the concentration of NH<sub>4</sub>
<sup>+</sup> ranged from undetectable to 1.42 &#xb5;M, and PO<sub>4</sub>
<sup>3-</sup> ranged from undetectable to 1.70 &#xb5;M. The N/P ratio was 6.7. The highest temperature (32&#xb0;C) represents the thermal bleaching threshold of corals in the study area, exceeding the mean temperature of the hottest month by 1-2&#xb0;C.</p>
</list-item>
<list-item>
<p>(2) Ambient N and ambient P treatment (ANAP): this treatment was designed to investigate the response of coral reefs to thermal stress in the open ocean, with a medium level of AN deposition. P supply was sufficient due to better water exchange, maintaining an optimal N/P ratio of 16. DIN in rainwater ranged from 0~8000 &#xb5;M in this region (EANET dataset), and for this treatment, the medium level of AN was set at 1500 &#xb5;M. Rainwater in SCS reaches 600&#xa0;mm per month (<xref ref-type="bibr" rid="B8">Chen et&#xa0;al., 2005</xref>), and rainfall was taken as 30&#xa0;mm per day. It was assumed that AN was carried by rainwater and deposited into coral reefs at a depth of 7&#xa0;m, with AN loading evenly mixed throughout the water column. Then DIN in seawater increased by 7 &#xb5;M (2.5 &#xb5;M NO<sub>3</sub>
<sup>-</sup> and 4.5 &#xb5;M NH<sub>4</sub>
<sup>+</sup>), and PO<sub>4</sub>
<sup>3-</sup> was 0.45 &#xb5;M. The temperature conditions were the same as those in the control treatment.</p>
</list-item>
<list-item>
<p>(3) High N and high P treatment (HNHP): this treatment aimed to examine the response of coral reefs to thermal stress in the open ocean, under a high level of AN deposition (8000 &#xb5;M in rainwater). This concentration was derived from the extreme DIN concentration observed in rainwater by ENAET (7890 &#xb5;M DIN in Kototabang in May, 2015). The treatment retained the same parameters as the ANAP treatment, including rainfall, water depth, N/P ratio, and temperature. But in this scenario, DIN in seawater increased by 30 &#xb5;M (13 &#xb5;M NO<sub>3</sub>
<sup>-</sup> and 17 &#xb5;M NH<sub>4</sub>
<sup>+</sup>), with PO<sub>4</sub>
<sup>3-</sup> reaching 1.9 &#xb5;M.</p>
</list-item>
<list-item>
<p>(4) Ambient N and low P treatment (ANLP): this treatment aimed to investigate coral responses to thermal stress in semi-closed areas such as lagoons, where there is a medium level of AN deposition and an imbalance of N and P supply. The rainfall, water depth, DIN in seawater, and temperature were the same as that in ANAP treatment. However, P supply was limited due to weak water exchange. The PO<sub>4</sub>
<sup>3-</sup> concentration was set as 0.19 &#xb5;M and the ratio of N/P was 36.</p>
</list-item>
<list-item>
<p>(5) Ambient N and high P treatment (ANHP): this treatment aimed to investigate the coral responses to thermal stress in the relatively closed area. It involved a medium level of AN deposition and an excessive P input (e.g., from seabird droppings or domestic sewage). The PO<sub>4</sub>
<sup>3-</sup> concentration was set at 0.9 &#xb5;M, and the N/P ratio was 8. Other environmental parameters, including rainfall, water depth, DIN in seawater, and temperature were the same as that in ANAP treatment.</p>
</list-item>
</list>
<p>Live corals were collected from the study area and then cultured in the laboratory. The coral species included <italic>Porites lutea</italic>, <italic>Favites pentagona</italic>, <italic>Acropora crateriformis</italic>, <italic>Acropora austera</italic>, <italic>Acropora divaricata</italic>, <italic>Montipora caliculata</italic>, <italic>Lithophyllon undulatum</italic>, and <italic>Oulophyllia bennettae</italic>. The first three species were relatively abundant, while the others were rare in the coral community (<xref ref-type="bibr" rid="B45">Liao, 2021</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>), so they were selected to explore AN impact on corals, as well as the community. They may also reflect the responses of corals in various morphologies, i.e., branching <italic>Acropora</italic>, foliose <italic>Montipora</italic> and <italic>Lithophyllon</italic>, and massive <italic>Porites</italic>, <italic>Favites</italic> and <italic>Oulophyllia</italic>. After 15-day cultivation, the corals were divided into fragments (5 &#xd7; 5 &#xd7; 5 cm<sup>3</sup>), with three coral fragments for each treatment. Then they were transferred to experimental tanks for pre-cultivation for 14 days. Artificial seawater was used in both control and treatment groups, and the artificial seawater was also filled with live rock (mainly calcium carbonate rock formed by the skeletons of dead corals) collected from the SCS to artificially simulate coral reef ecosystems.</p>
<p>The pulse-amplitude modulated fluorometer (Monitoring-PAM, WALZ Germany) was used to measure the photochemical quantum yield of photosystem II (PSII) of coral-algal symbionts at 20:00-21:00 (after-dark treatment for 30&#xa0;min), and the value was recorded as maximum photosynthetic efficiency (Fv/Fm). Photos of corals in each treatment and macroalgae in three treatments (Control, ANAP, and HNHP) were taken to trace their ecological status. The Symbiodiniaceae (zooxanthellae) were separated from the symbiont by a washer with the high-pressure washing of artificial seawater, and the zooxanthellae density was measured according to the concentration of zooxanthellae and the surface area of the coral skeleton (<xref ref-type="bibr" rid="B43">Li et&#xa0;al., 2011</xref>).</p>
<p>The high-purity ammonium chloride (NH<sub>4</sub>Cl), sodium nitrate (NaNO<sub>3</sub>), and potassium dihydrogen phosphate (KH<sub>2</sub>PO<sub>4</sub>) solids were used to prepare the nutrient solution. The concentrations of NH<sub>4</sub>
<sup>+</sup>, NO<sub>3</sub>
<sup>-</sup>, and PO<sub>4</sub>
<sup>3-</sup> in the seawater of each treatment were monitored daily, following the seawater analysis standard of China (GB, 17378.4-2007). These analyses were conducted using Indophenol blue Spectrophotometry (NH<sub>4</sub>
<sup>+</sup>), Reduction of the cadmium column-Spectrophotometry of N-(1-naphthyl) ethylene diamine hydrochloride (NO<sub>3</sub>
<sup>-</sup>), and Phosphomolybdenum blue spectrophotometry (PO<sub>4</sub>
<sup>3-</sup>). All nutrient analyses were conducted using an ultraviolet spectrophotometer (Shimadzu, UV-2600i). The minimum detection limits (MDLs) were 0.082 &#xb5;M NH<sub>4</sub>
<sup>+</sup>, 0.032 &#xb5;M NO<sub>3</sub>
<sup>-</sup>, and 0.2 &#xb5;M PO<sub>4</sub>
<sup>3-</sup>.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Ecological status of coral reefs</title>
<sec id="s3_1_1">
<label>3.1.1</label>
<title>Live coral cover</title>
<p>Horizontally, the Xuande Atoll exhibited the highest average coral cover at 25.2% (&#xb1; 2.8%), while Yongle Atoll had the lowest at 8.8% ( &#xb1; 1.7%). Vertically, the shallow layer (1-4&#xa0;m) had the lowest average coral cover (13.9%) in contrast to the middle layer (5-8&#xa0;m) at 17.4% and the deep layer (10-15&#xa0;m) at 17.5% (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). No statistically significant difference was found among the average coral cover values of these three layers (<italic>p</italic> = 0.852). In 50% of the sampling sections (n = 20), coral cover in the shallow and/or middle layer exceeded that in the deep layer (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Coral cover in the deep layer surpassed that in the shallower layer in 20% of sections. In the remaining sections, the coral cover was similar among the three layers. In the deep layer, 44.1% of the sites had coral coverage less than 10%, which was higher than the 36.4% observed in the middle layer. Additionally, 40.9% of sites in the middle layer had coral cover exceeding 20%, surpassing the proportions in the shallow layer (28%) and deep layer (32.4%). This survey revealed a reduced coral cover level in certain parts of this remote region, with no consistent advantage in coral cover for the deeper layers.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Benthic composition of the South China Sea reefs under various water depths. <bold>(A)</bold> live coral cover and <bold>(B)</bold> macroalgae cover (mean &#xb1; SE).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Benthic composition of reef sites under various water depths. Gray histogram bars denote less coral/more macroalgae in deeper waters than in shallower waters; the reverse is shown by the blank bars.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g003.tif"/>
</fig>
</sec>
<sec id="s3_1_2">
<label>3.1.2</label>
<title>Macroalgae cover</title>
<p>Horizontally, the highest average macroalgae cover (14.5%) was observed in Xuande Atoll, and the lowest (4.9%) was recorded in Huangyan. Across the shallow, middle, and deep layers, the average macroalgae cover was 10.7% (0-49.6%), 7.5% (0-59.5%), and 11.3% (0-57.1%), respectively (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). No statistically significant difference was found in the average macroalgae cover among these three layers (<italic>p</italic> = 0.895). However, at 40% of the sections, the macroalgae cover in the deep layer exceeded that in the shallower layers, while at only 25% of sites, the cover was lower than in the shallower layers (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). In the deep layer, 26.5% of the sites exhibited macroalgae cover exceeding 10%, which was higher than the proportion observed in the middle layer (18.2%). This survey suggested that macroalgae present a substantial challenge to corals in this remote region, including the relatively deep layers.</p>
</sec>
<sec id="s3_1_3">
<label>3.1.3</label>
<title>Algae-coral ratio</title>
<p>The algae-coral ratio in all the reef sites averaged 0.62 (SE = 2.3%). The average algae-coral ratios in the Yongle Atoll, Xuande Atoll, and Zhongsha Islands were 0.83, 0.58, and 0.40, respectively. In the shallow layer, the ratio averaged 0.8 (0-136), and 44% of the reef sites had a ratio greater than 1, indicating a coral-algae phase shift. The middle layer hosted the lowest algae-coral ratio (0.4), with values ranging from 0 to 2.1. However, 13.6% of the reef sites had a ratio greater than 1. In the deep layer, the algae-coral ratio averaged 0.7 (0-105.7), and 26.5% of reef sites had a ratio greater than 1. The results suggested that corals have a limited advantage over macroalgae in this remote coral reef region.</p>
</sec>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>AN deposition flux</title>
<p>The monthly concentration of NH<sub>4</sub>
<sup>+</sup> in each station ranged from 0 to 7890 &#xb5;M, and NO<sub>3</sub>
<sup>-</sup> ranged from 0 to 277.27 &#xb5;M during the summer monsoon period (April-September; <xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A, B</bold>
</xref>). The monthly average concentration of DIN ranged from 256.47 to 2705.11 &#xb5;M during the summer monsoon season, with NH<sub>4</sub>
<sup>+</sup> and NO<sub>3</sub>
<sup>-</sup> ranging from 119.04 to 2484.29 &#xb5;M and 89.29 to 251.56 &#xb5;M, respectively. The monthly DIN concentration increased from 218.48 &#xb5;M in, 2000 to 436.81 &#xb5;M in, 2008, peaking at 1568.90 &#xb5;M in 2015. NH<sub>4</sub>
<sup>+</sup> and DIN had similar trends, while NO<sub>3</sub>
<sup>-</sup> showed no significant trend (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>). Throughout the year, high levels of NH<sub>4</sub>
<sup>+</sup> and NO<sub>3</sub>
<sup>-</sup> (646.51 and 821.70 &#xb5;M) were found in April and May. Additionally, March-October constituted the higher value period (418.86-502.24 &#xb5;M), while November-February constituted the lower value period (237.99-352.30 &#xb5;M; <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). During the summer monsoon season, NH<sub>4</sub>
<sup>+</sup> accounted for 42-92% of the DIN, and NO<sub>3</sub>
<sup>-</sup> accounted for 8-58%. Assuming an average annual rainfall of 1500&#xa0;mm for the Xisha Islands, the deposition of DIN was 15.8 mmol N&#xb7;m<sup>-2</sup>&#xb7;month<sup>-2</sup> during the summer monsoon season. If 30% is lost in transit, the deposition of DIN would be 11 mmol N&#xb7;m<sup>-2</sup>&#xb7;month<sup>-2</sup>.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Atmospheric N deposition onto the South China Sea reefs. Monthly <bold>(A)</bold> NH<sub>4</sub>
<sup>+</sup> concentration and <bold>(B)</bold> NO<sub>3</sub>
<sup>-</sup> concentration in rainwater at sites upwind of the SCS Reefs in the summer monsoon season (April-September) from 2000 to 2018 <bold>(C)</bold> seasonal and <bold>(D)</bold> annual variation of monthly concentration of DIN, NH<sub>4</sub>
<sup>+</sup>, and NO<sub>3</sub>
<sup>-</sup>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g004.tif"/>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Response of coral reefs to AN deposition</title>
<sec id="s3_3_1">
<label>3.3.1</label>
<title>Accumulated nutrients in seawater</title>
<p>In the control treatment, the average concentration of DIN and NO<sub>3</sub>
<sup>-</sup> in seawater was 7.15 and 7.03 &#xb5;M, respectively, while the levels of NH<sub>4</sub>
<sup>+</sup> ranged from undetectable to 1.42 &#xb5;M, and PO<sub>4</sub>
<sup>3-</sup> ranged from undetectable to 1.70 &#xb5;M (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). The N/P ratio was calculated as 6.7 based on the available data. In the ANAP treatment, DIN showed fluctuations, ranging from 8.09 to 14.80 &#xb5;M and peaking at 36.24 &#xb5;M on day 11 (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). NO<sub>3</sub>
<sup>-</sup> concentrations ranged from 2.56 to 25.63 &#xb5;M (days 1-17), decreased to 2.24 &#xb5;M (days 18-33), and then increased to 17.24 &#xb5;M (days 34-43). However, NH<sub>4</sub>
<sup>+</sup> concentration remained relatively low, fluctuating between undetectable values and 10.62 &#xb5;M, while PO<sub>4</sub>
<sup>3-</sup> ranged from undetectable to 3.12 &#xb5;M, resulting in an N/P ratio of 14.6. The results suggested that the loading of NH<sub>4</sub>
<sup>+</sup> and PO<sub>4</sub>
<sup>3-</sup> was rapidly consumed by algae, while excessive NO<sub>3</sub>
<sup>-</sup> accumulated in seawater, leading to an increase in the N/P ratio. To explore the potential dynamics of the N/P ratio, multiple imputation methods were employed to replace the missing values (below the MDLs). By integrating the detected and imputed data, the N/P ratio was estimated to be 44 for the control group and 62 for the ANAP group (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S2</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Variations of nutrient concentration in seawater during the experiment. <bold>(A)</bold> control, <bold>(B)</bold> ANAP, and <bold>(C)</bold> HNHP treatment.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g005.tif"/>
</fig>
<p>In the HNHP treatment, DIN and NO<sub>3</sub>
<sup>-</sup> rapidly exceeded 100 &#xb5;M (days 6-20), then increased from 113.64 to 954.23 &#xb5;M, reaching 641.91 &#xb5;M by the end (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). NH<sub>4</sub>
<sup>+</sup> fluctuated slightly from 0.15 to 10 &#xb5;M, with only two peaks on day 22 (87.16 &#xb5;M) and day 25 (25.14 &#xb5;M). PO<sub>4</sub>
<sup>3-</sup> remained at relatively low levels, ranging from 1.62 to 5.64 &#xb5;M (days 0-20), before experiencing a sharp increase to 169.36 &#xb5;M on day 21. The N/P ratio in this treatment was 24.5. These results suggested that the loading of DIN and PO<sub>4</sub>
<sup>3-</sup> exceeded the absorption capacity of algae, leading to the accumulation of excessive nutrients at extremely high levels in seawater, which shifted the system from N-limited conditions to P limitation.</p>
</sec>
<sec id="s3_3_2">
<label>3.3.2</label>
<title>Rapidly growing macroalgae</title>
<p>The cover of macroalgae (<italic>Caulerpa serrulata</italic>, <italic>Caulerpa racemosa</italic>, <italic>Caulerpa racemosa</italic> var. <italic>turbinata</italic>, and <italic>Caulerpa sertularioides</italic>) increased by 155% in the ANAP treatment (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6A, B</bold>
</xref>). The cover increased from 18.3% to 40% (days 0-14) and peaked at 65% on day 42. In the HNHP treatment, the cover of macroalgae increased by 123%. The cover rose from 21.7% to 68.3% (days 0-14) and remained at 70% (days 15-42). In contrast, macroalgae cover in the control treatment ranged from 0 to 2%. The results indicated that macroalgae can be greatly promoted by AN within a short time frame (2 weeks), suggesting that once nutrient absorption by algae rapidly reaches saturation, excessive loading of AN may stress corals.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Response of macroalgae to different nutrient supplies. <bold>(A)</bold> The changes in macroalgae cover over time; <bold>(B)</bold> macroalgae pattern.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g006.tif"/>
</fig>
</sec>
<sec id="s3_3_3">
<label>3.3.3</label>
<title>Responses of coral-algal symbionts</title>
<p>(1) Photosynthetic efficiency and survival rate</p>
<p>In the control treatment, when compared to the ANAP and HNHP treatments, most corals declined, and 75% of them died under thermal stress without AN loading (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). The N/P ratio in this treatment was 6.7 in seawater. Among the <italic>A. austera</italic> corals, the Fv/Fm values remained above 0.5, but they bleached and died on days 18-26 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8A</bold>
</xref>). The Fv/Fm values of <italic>P. lutea</italic> dropped below 0.5 on day 6, and they bleached and died on days 23-25 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8C</bold>
</xref>). For <italic>F. pentagona</italic>, the Fv/Fm values decreased below 0.5 on day 38 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8B</bold>
</xref>), and for <italic>L. undulatum</italic>, they remained below 0.5 for most of the experiment period (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8D</bold>
</xref>), but no visible bleaching was observed on them during the experiment (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>). Additionally, in the control treatment, when compared to the ANLP and ANHP treatments, all the corals of <italic>O. bennettae</italic>, <italic>A. crateriformis</italic>, <italic>A. divaricata</italic>, and <italic>M. caliculata</italic> remained in a healthy state, with Fv/Fm values above 0.5 (<xref ref-type="fig" rid="f10">
<bold>Figure&#xa0;10</bold>
</xref>). There were no visible signs of coral bleaching or death observed in the experiment (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>).</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Survival rates of coral colonies at different nutrient supplies.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g007.tif"/>
</fig>
<fig id="f8" position="float">
<label>Figure&#xa0;8</label>
<caption>
<p>Photosynthetic efficiency of coral colonies exposed to different concentrations of balanced nutrient supplies. <bold>(A)</bold> <italic>A</italic>. <italic>austera</italic>, <bold>(B)</bold> <italic>F</italic>. <italic>pentagona</italic>, <bold>(C)</bold> <italic>P. lutea</italic>, <bold>(D)</bold> <italic>L. undulatum</italic>. The horizontal dashed line indicates the threshold above which Fv/Fm values are considered to be in a healthy range.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g008.tif"/>
</fig>
<fig id="f9" position="float">
<label>Figure&#xa0;9</label>
<caption>
<p>Bleaching pattern of corals under different nutrient supplies.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g009.tif"/>
</fig>
<fig id="f10" position="float">
<label>Figure&#xa0;10</label>
<caption>
<p>Photosynthetic efficiency of coral colonies exposed to different concentrations of imbalanced nutrient supplies. <bold>(A)</bold> <italic>A</italic>. <italic>divaricata</italic>, <bold>(B)</bold> <italic>A</italic>. <italic>crateriformis</italic>, <bold>(C)</bold> <italic>O. bennettae</italic>, <bold>(D)</bold> <italic>M. caliculata</italic>. The horizontal dashed line is the same as <xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g010.tif"/>
</fig>
<p>In the ANAP treatment, the Fv/Fm values of <italic>A. austera</italic> remained above 0.5 for 41 days (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8A</bold>
</xref>), and those of <italic>F. pentagona</italic> decreased below 0.5 on day 35 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8B</bold>
</xref>), which was similar to what was observed in the control. The Fv/Fm values of <italic>P. lutea</italic> dropped below 0.5 on day 27 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8C</bold>
</xref>), and <italic>L. undulatum</italic> on day 29 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8D</bold>
</xref>). This is an improvement compared to the control, where Fv/Fm values decreased below 0.5 on day 6 for <italic>P. lutea</italic> and day 1 for <italic>L. undulatum</italic>. None of the corals exhibited bleaching, and they survived for 41 days (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>). The survival rate of the corals was significantly higher than that of the control treatment (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>).</p>
<p>In the HNHP treatment, the corals, with the exception of <italic>L. undulatum</italic>, experienced more severe declines compared to the control. The Fv/Fm values of <italic>A. austera</italic> remained above 0.5, but they underwent bleaching and died between days 16 and 24 (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8A</bold>
</xref>). The Fv/Fm values of <italic>P. lutea</italic> and <italic>F. pentagona</italic> dropped below 0.5 on day 11 and day 19, respectively, resulting in bleaching and mortality between days 21 and 26 and between days 20 and 39 (<xref ref-type="fig" rid="f8">
<bold>Figures&#xa0;8B, C</bold>
</xref>). The survival period was shorter than that observed in the control. However, the Fv/Fm of <italic>L. undulatum</italic> remained above 0.5 and no visible bleaching was observed in them during the experiment (<xref ref-type="fig" rid="f8">
<bold>Figures 8D</bold>
</xref>, <xref ref-type="fig" rid="f9">
<bold>9</bold>
</xref>).</p>
<p>In the ANLP treatment, the Fv/Fm values of <italic>A. crateriformis</italic> and <italic>O. bennettae</italic> remained above 0.5 (<xref ref-type="fig" rid="f10">
<bold>Figures&#xa0;10B, C</bold>
</xref>). The Fv/Fm values of <italic>A. divaricata</italic> stayed above 0.5, while that of <italic>M. caliculata</italic> decreased below 0.5 on day 2 (28&#xb0;C; <xref ref-type="fig" rid="f10">
<bold>Figures&#xa0;10A, D</bold>
</xref>). However, the former began to bleach and die on days 4-6 and the latter on days 2-5 (<xref ref-type="fig" rid="f7">
<bold>Figures&#xa0;7</bold>
</xref>, <xref ref-type="fig" rid="f9">
<bold>9</bold>
</xref>). In the ANHP treatment, the Fv/Fm values and survival rates of <italic>A. crateriformis</italic> and <italic>O. bennettae</italic> showed similar trends to those in the ANLP treatment (<xref ref-type="fig" rid="f10">
<bold>Figures&#xa0;10B, C</bold>
</xref>). However, the Fv/Fm values of <italic>A. divaricata</italic> and <italic>M. caliculata</italic> dropped below 0.5 on day 7 (<xref ref-type="fig" rid="f10">
<bold>Figures&#xa0;10A, D</bold>
</xref>), and the former bleached and died on day 8, while the latter on days 5-8 (<xref ref-type="fig" rid="f7">
<bold>Figures&#xa0;7</bold>
</xref>, <xref ref-type="fig" rid="f9">
<bold>9</bold>
</xref>).</p>
<p>(2) Density of Symbiotic Zooxanthellae</p>
<p>The density of zooxanthellae was analyzed in <italic>A. austera</italic> in ANAP and HNHP treatments, as well as <italic>A. crateriformis</italic> and <italic>O. bennettae</italic> in ANLP and ANHP treatments as these corals had remaining tissue at the end of the experiment (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11</bold>
</xref>). At the beginning of the experiment, the zooxanthellae density for the three corals were 1.03&#xd7;10<sup>6</sup>, 1.03&#xd7;10<sup>6</sup>, and 5.33&#xd7;10<sup>6</sup> cells/cm<sup>-2</sup>, respectively.</p>
<fig id="f11" position="float">
<label>Figure&#xa0;11</label>
<caption>
<p>Response of zooxanthellae density of coral colonies to different nutrient supplies. <bold>(A)</bold> <italic>A</italic>. <italic>austera</italic>, <bold>(B)</bold> <italic>A</italic>. <italic>crateriformis</italic>, and <bold>(C)</bold> <italic>O. bennettae</italic>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-11-1214449-g011.tif"/>
</fig>
<p>By the end of the control treatment, the zooxanthellae density for <italic>A. austera</italic>, <italic>A. crateriformis</italic>, and <italic>O. bennettae</italic> decreased to 0.33&#xd7;10<sup>6</sup>, 0.98&#xd7;10<sup>6</sup>, and 1.21&#xd7;10<sup>6</sup> cells/cm<sup>-2</sup>, respectively. The heating treatment, without nutrient loading, led to a loss of 5.0~77.0% of the initial zooxanthellae.</p>
<p>The zooxanthellae density of <italic>A. austera</italic> was 0.88&#xd7;10<sup>6</sup> cells/cm<sup>-2</sup> in ANAP and 0.60&#xd7;10<sup>6</sup> cells cm<sup>-2</sup> in HNHP by the end of the experiment. These densities represented a reduction of 15.0% and 42.0% from the initial levels, respectively (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11A</bold>
</xref>). However, the density in ANAP was 2.5 times higher than that in the control. The results suggested that AN deposition may promote the growth of zooxanthellae, potentially alleviating the breakdown of symbiosis between corals and their algal symbionts under thermal stress and thereby mitigating coral bleaching.</p>
<p>The zooxanthellae density of <italic>O. bennettae</italic> decreased to 2.79&#xd7;10<sup>6</sup> cells/cm<sup>-2</sup> in ANHP by the end (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11C</bold>
</xref>). This represents a decrease of 47.6% from its initial level and an increase of 130.6% compared to the control treatment. Moreover, in ANLP treatment, the density decreased to 2.16&#xd7;10<sup>6</sup> cells/cm<sup>-2</sup>, which is 59.5% lower than the initial level and 78.3% higher than that in the control. On the other hand, <italic>A. crateriformis</italic> maintained a similar density of zooxanthellae at both the beginning and the end of the control treatment, indicating that this coral species exhibits relatively strong thermotolerance. However, the zooxanthellae density of <italic>A. crateriformis</italic> decreased to 0.76&#xd7;10<sup>6</sup> cells/cm<sup>-2</sup> in ANHP and 0.46&#xd7;10<sup>6</sup> cells cm<sup>-2</sup> in ANLP, respectively, which is 26.2% and 55.8% lower than the initial level and 22.1% and 53.4% lower than that in the control (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11B</bold>
</xref>). These results, as supplementary evidence, indicate that an imbalanced supply of N and P exacerbates the breakdown of the coral-algal symbionts, with P restriction playing a more significant role in contributing to coral bleaching.</p>
</sec>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>Relationship between coral thermotolerance and balanced nutrient supply</title>
<p>The moderate and balanced supply of nutrients (DIN, 7 &#xb5;M; N/P, 16) enables the survival of the majority (93.8%) of the sampled coral colonies in the ANAP treatment under thermal stress (32&#xb0;C). The survival period (41 days) of these corals was longer than that of the control (heating without nutrient loading), which began bleaching on day 16. While many studies have indicated that enrichment can inhabit coral growth as they usually favor oligotrophic waters (<xref ref-type="bibr" rid="B42">Lei et&#xa0;al., 2009</xref>), an increasing number of studies have found that moderate levels of nutrients have positive effects on corals. Particularly, enrichment may enhance coral thermotolerance when they are exposed to thermal stress. For instance, after a 23-day period of 31.2&#xb0;C, the survival rate of <italic>Acropora millepora</italic> in a moderate nutrient environment (3.63 &#xb5;M NO<sub>3</sub>
<sup>-</sup>) reached approximately 80%, which is double the survival rate in a low-nutrient environment (NO<sub>3</sub>
<sup>-</sup>, 2.50 &#xb5;M; <xref ref-type="bibr" rid="B19">Fabricius et&#xa0;al., 2013</xref>). No visible sign of bleaching was observed for <italic>Pocillopora damicornis</italic> in the treatment of 2.1 &#xb5;M DIN and 0.78 &#xb5;M PO<sub>4</sub>
<sup>3-</sup> during 28-day heating, but they bleached without nutrient adding (<xref ref-type="bibr" rid="B49">Mcclanahan et&#xa0;al., 2003</xref>). In the control treatment, the N/P ratio (6.7, calculated on detected data) closely resembled that of many coral reef regions, including the central SCS, Great Barrier Reef, and Bonaire islands, which experienced N limitation, with N/P ratios ranging from 4.3 to 12.3 (<xref ref-type="bibr" rid="B31">Ke et&#xa0;al., 2018</xref>). This nutrient imbalance makes corals more susceptible to heat-induced bleaching. However, the moderate N loading (7 &#xb5;M DIN), equivalent to a moderate level of AN deposition in the SCS, may help alleviate seawater nutrient limitation, thereby mitigating coral bleaching under thermal stress.</p>
<p>The improved coral thermotolerance may be attributed to the enhanced photosynthetic efficiency of coral-algal symbionts due to nutrient supply. With nutrient supplementation, the loss of zooxanthellae from the corals (<italic>A. austera</italic>) under thermal stress was significantly reduced (~ 10%), whereas in the control, the loss was much more severe (~ 68%). Sustained photosynthesis by coral-algal symbionts ensured an energy supply for corals to withstand thermal stress. As a result, <italic>A. austera</italic> corals survived for an additional 21 days compared to those in the control, and the Fv/Fm values of the former remained at approximately 0.5 on day 27, indicating a relatively healthy status (<xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>). Similar results have been reported in other laboratory studies. With the addition of 3 &#xb5;M NO<sub>3</sub>
<sup>-</sup> and 1 &#xb5;M P, the net photosynthesis of <italic>Pocillopora damicornis</italic> increased almost two-fold at 25&#xb0;C (<xref ref-type="bibr" rid="B11">Courtial et&#xa0;al., 2018</xref>). Chlorophyll a and total protein content in <italic>Stylophora pistillata</italic> increased in the presence of 4 &#xb5;M NH<sub>4</sub>
<sup>+</sup> after 6 weeks (<xref ref-type="bibr" rid="B3">Bednarz et&#xa0;al., 2020</xref>). Additionally, pigment concentrations decreased by 60% under 30&#xb0;C without nutrient adding but only decreased by 25% with NH<sub>4</sub>
<sup>+</sup> supply (<xref ref-type="bibr" rid="B6">Beraud et&#xa0;al., 2013</xref>). Therefore, it is reasonable to conclude that moderate AN supply may mitigate the susceptibility of corals to heat bleaching.</p>
<p>Despite a balanced nutrient input, seawater N/P ratios may fluctuate due to the dynamic uptake by corals (<xref ref-type="bibr" rid="B61">Steven and Atkinson, 2003</xref>). As shown in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S2</bold>
</xref>, in the ANAP treatment, NH<sub>4</sub>
<sup>+</sup> and PO<sub>4</sub>
<sup>3-</sup> were depleted (undetectable) for 74% and 33% of the experiment period, respectively. It seemed that the nutrients had been consumed, and the corals may have experienced temporary spikes in N/P ratios (imputed as an average of 62). Nevertheless, sustained nutrient input was restored to a relatively balanced condition, e.g., N/P = 17 on day 29. The supplemented nutrients may contribute to sustaining symbiont density and photosynthesis, thereby enhancing coral thermal tolerance (<xref ref-type="bibr" rid="B17">Ezzat et&#xa0;al., 2016</xref>). In contrast, the control group had an imputed N/P ratio of 44. The lack of nutrient input extended the periods of nutrient depletion, with proportions reaching 92% (PO<sub>4</sub>
<sup>3-</sup>) and 80% (NH<sub>4</sub>
<sup>+</sup>). The prolonged nutrient deficiency may reduce coral resilience to heat stress (<xref ref-type="bibr" rid="B58">Rosset et&#xa0;al., 2017</xref>).</p>
<p>By contrast, the HNHP treatment showed that a high level of N input weakened coral thermotolerance, even with a balanced supply of nutrients (DIN, 30 &#xb5;M; N/P, 16; 32&#xb0;C). Three out of four coral species in the HNHP exhibited shorter survival times than those without nutrient loading. For instance, the survival time of <italic>A. austera</italic> (16-24 days) was 2 days shorter than in the control. Negative effects of nutrient enrichment on corals have been documented, including inhibition of coral growth and increase in coral thermal susceptibility. The growth rate of <italic>Acropora cervicornis</italic> decreased by 61% after 1 month with the supply of N and P (NO<sub>3</sub>
<sup>-</sup>, 10 &#xb5;M; PO<sub>4</sub>
<sup>3-</sup>, 4 &#xb5;M; N/P, 2.5; <xref ref-type="bibr" rid="B56">Renegar and Riegl, 2005</xref>). Recent studies have shown that coral bleaching was minimal when nutrient levels were high but balanced between N and P. This is true for a relatively modest nutrient enrichment (6.5 &#xb5;M N, 0.3 &#xb5;M P; <xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>). However, the treatment in this study, reflecting the response of corals to a wet deposition of 8000 &#xb5;M DIN into the SCS, suggests the negative effect of high concentrations of nutrients on corals.</p>
<p>The accelerated coral bleaching may be attributed to the loss of zooxanthellae and the reduced energy supply available to corals to withstand thermal stress. The zooxanthellae density of <italic>A. austera</italic> in the HAHP was only two-thirds of that in the ANAP. It has been reported that high concentrations of nutrients stimulate the division rate of intracellular symbionts, affecting the physiological interaction between corals and zooxanthellae by accelerating the cell division rates of the intracellular symbionts (<xref ref-type="bibr" rid="B63">Szmant, 2002</xref>). However, excessive enrichment or an imbalanced N/P ratio can hinder zooxanthellae growth. Enrichment of NO<sub>3</sub>
<sup>-</sup> (&gt; 20 &#xb5;M) led to a 20% loss of zooxanthellae density and a 30% decrease in chlorophyll concentration (<xref ref-type="bibr" rid="B42">Lei et&#xa0;al., 2009</xref>). Moreover, the continued nutrient loading led to nutrient accumulation in seawater. NH<sub>4</sub>
<sup>+</sup> ranged from 0 to 10 &#xb5;M, while NO<sub>3</sub>
<sup>-</sup> exceeded 100 &#xb5;M, peaking at ~ 1 mmol L<sup>-1</sup> during the HNHP treatment. This indicates that NH<sub>4</sub>
<sup>+</sup> was preferentially absorbed by algae, but NO<sub>3</sub>
<sup>-</sup> gradually accumulated in the seawater. Compared to NH<sub>4</sub>
<sup>+</sup>, NO<sub>3</sub>
<sup>-</sup> enrichment often imposes more stress on coral growth (<xref ref-type="bibr" rid="B18">Fabricius, 2005</xref>) and makes corals more sensitive to thermal stress. This is because nitrate needs to be reduced to ammonium by nitrate reductase and nitrite reductase before it can be assimilated by symbiotic algae. The reduction process requires photosynthetic electrons and energy, thus further promoting oxidative stress in coral halobiont under thermal stress (<xref ref-type="bibr" rid="B74">Zhao et&#xa0;al., 2021</xref>). Moreover, the N/P ratio increased from 16 to 24.5 during the HNHP treatment. This is likely because the proportion of nutrient uptake by corals is dynamic (<xref ref-type="bibr" rid="B61">Steven and Atkinson, 2003</xref>). This N/P ratio (24.5) may represent a mild P limitation, although it exceeds the Redfield ratio, which is considered an ideal reference point for the healthy growth of many marine organisms. However, previous research has indicated that low N and P levels with a similar N/P ratio (N/P = 21.7, 6.5 &#xb5;M DIN, 0.3 &#xb5;M P) did not trigger coral bleaching (<xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>). This implies that the primary cause of the severe coral bleaching in the HNHP is likely the high levels of accumulated nutrients in seawater (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). This study highlights that an extremely high amount of AN, even with a balanced nutrient supply, could increase coral susceptibility to bleaching.</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Imbalance of N/P exacerbated coral bleaching</title>
<p>Our results revealed that corals had a short survival duration (2-8 days) in both ANHP and ANLP treatments. It seemed that an imbalanced nutrient supply posed a greater challenge in meeting the nutrient demand of corals under heat stress compared to a balanced supply. This highlights the potential risks associated with an imbalance of N and P levels in coral ecosystems, which may be the result of continuous AN deposition. In coastal waters off Singapore, for instance, during the haze period, the average wet deposition fluxes of water-soluble NO<sub>x</sub>
<sup>-</sup> and PO<sub>4</sub>
<sup>3-</sup> were 75.57 &#xb1; 7.31 mg&#xb7;m<sup>-2</sup>&#xb7;day<sup>-1</sup> and 2.25 &#xb1; 1.75 mg&#xb7;m<sup>-2</sup>&#xb7;day<sup>-1</sup>, respectively (<xref ref-type="bibr" rid="B62">Sundarambal et&#xa0;al., 2010</xref>). Conversely, excessive P often comes from seabird emissions or volcanic eruptions (<xref ref-type="bibr" rid="B54">Olgun et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B26">Hentati-Sundberg et&#xa0;al., 2020</xref>). Guano stock solutions, for instance, have been recorded to contain as much as 1960 &#xb5;M of P and 4800 &#xb5;M of N (<xref ref-type="bibr" rid="B60">Shatova et&#xa0;al., 2017</xref>). The excessive supply of either N or P can lead to a nutrient imbalance in seawater, especially in regions with weak water exchange.</p>
<p>The corals declined dramatically in response to imbalanced nutrient conditions, primarily due to the breakdown of the symbiotic relationship between the corals and zooxanthellae. In the N-limited treatment (ANHP, N/P = 8), the Fv/Fm values of <italic>A. divaricata</italic> and <italic>M. caliculata</italic> on day 7 both dropped below 0.5, constituting a decline of 96.5% and 44.4%, respectively. Additionally, the zooxanthellae density in the N-limited treatment was reduced by 26.2-47.6% compared to the initial levels. In response to P-limited stress, photosynthetic organisms often adapt by substituting phospholipids with sulpholipids. This adaptation allows them to maintain the proper functioning of photosynthetic membranes and the embedded photosystems. The elevated sulpholipids can result in a shift in lipid ratios, presumably altering the normal ionic character of photosynthetic membranes (<xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>). Conversely, under heat stress (30&#xb0;C), the uptake rates of PO<sub>4</sub>
<sup>3-</sup> by corals can increase compared to ambient conditions (25&#xb0;C; <xref ref-type="bibr" rid="B17">Ezzat et&#xa0;al., 2016</xref>). This increased availability of phosphorus may enhance the deposition of phospholipids in membranes, as well as the biosynthesis and storage of acylated glycerol derivatives and wax esters in vesicles, possibly at the expense of terpene biosynthesis (<xref ref-type="bibr" rid="B21">Fleury et&#xa0;al., 2000</xref>). Recent research has highlighted the negative effects of an imbalance of N/P on coral susceptibility (<xref ref-type="bibr" rid="B74">Zhao et&#xa0;al., 2021</xref>). The survival times of corals were reduced by over 50% under P-limited conditions (N/P, 43; 33&#xb0;C). <italic>Montipora foliosa</italic> lost ~50% of its zooxanthellae, and chlorophyll-a concentration decreased by over 50% after 3 weeks (<xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>). Similarly, the growth rate of <italic>Acropora cervicornis</italic> decreased by 61% when the N/P ratio was 0.25 after 5 weeks. The decline was even more severe (116%) when corals were subjected to separate N (N/P, 141.86) and P (N/P, 0.18) treatments (<xref ref-type="bibr" rid="B56">Renegar and Riegl, 2005</xref>). These independent experiments provide further support for our conclusion that imbalances, both N and P limitations, increase the vulnerability of corals to thermal bleaching.</p>
<p>Our experiments revealed notable interspecific differences in how corals respond to nutrient enrichment and heating. <italic>A. austera</italic>, <italic>A. divaricata</italic>, <italic>M. caliculata</italic>, and <italic>F. pentagona</italic> exhibited relatively weak tolerance to these stressors, while <italic>P. lutea</italic>, <italic>L. undulatum</italic>, <italic>A. crateriformis</italic>, and <italic>O. bennettae</italic> had a comparatively stronger tolerance. A review that summarized nutrient thresholds for maintaining healthy coral in laboratory experiments highlighted these variations. For instance, <italic>Montipora</italic>, <italic>Favites</italic>, <italic>Porities</italic>, and <italic>Platygyra</italic> have health thresholds of 9 &#xb5;M N and 0.22 &#xb5;M P, whereas <italic>Acropora</italic> has a lower threshold (4.6 &#xb5;M N; 0.13 &#xb5;M P; <xref ref-type="bibr" rid="B74">Zhao et&#xa0;al., 2021</xref>). The Fv/Fm values of <italic>Montipora foliosa</italic> remained within the normal range under both eutrophic (6.5 &#xb5;M N; 0.3 &#xb5;M P) and oligotrophic (0.7 &#xb5;M N; 0.006 &#xb5;M P) conditions after 12 weeks (<xref ref-type="bibr" rid="B69">Wiedenmann et&#xa0;al., 2013</xref>). In contrast, <italic>Acropora tenuis</italic> lost 21-61% of zooxanthellae after a 7-day treatment with 5.05 &#xb5;M DIN, 0.28 &#xb5;M P, and a temperature of 31&#xb0;C (<xref ref-type="bibr" rid="B64">Tanaka et&#xa0;al., 2014</xref>). Among the coral species in this study, it appeared that relatively abundant species (e.g., <italic>F</italic>. <italic>pentagona</italic>) and some rare species (e.g., <italic>A. austera</italic>, <italic>A. divaricata</italic>, and <italic>M. caliculata</italic>) of this coral community were more susceptible to enrichment. Therefore, it can be speculated that AN deposition into coral reefs may not only reduce coral biomass but also alter coral community composition. These changes could involve shifts in dominant species or the loss of rare species.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Increased coral-algal phase shifts by AN deposition</title>
<p>Macroalgae have a competitive advantage over corals, covering 13.6% to 44% of reef sites across different depths (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The phenomenon of coral-algal phase shifts observed in remote coral reefs may be attributed to coral declines and the overgrowth of macroalgae caused by AN deposition. This hypothesis is supported by our experiment. In both the ANAP and HNHP treatments, we observed a significant increase in macroalgae cover. By day 42, the macroalgae cover of <italic>C. serrulata, C. racemosa, C. racemosa</italic> var. <italic>turbinata, and C. sertularioides</italic> reached 65% in the ANAP, while in the HNHP, it reached 70% by day 22. The treatments were designed to simulate the response of benthic macroalgae on coral reefs when exposed to AN deposition levels ranging from 450 &#xb5;M to 2000 &#xb5;M. These levels of N supply correspond to the wet deposition of AN in the upwind regions of the SCS Reefs in April and May, 2015. For instance, AN concentrations were recorded at 2174.9 &#xb5;M in locations such as Tanah Rata and Petaling Jaya in Malaysia and Kototabang in Indonesia. Our experimental observations help explain the observed overgrown macroalgae (up to 60%) on the SCS reefs from May to July, 2015. This macroalgae cover far exceeded that found on healthy reefs, which typically have less than 2% macroalgae cover (<xref ref-type="bibr" rid="B28">Hughes et&#xa0;al., 2010</xref>). Additionally, we noted that macroalgae cover tended to be greater in deeper layers compared to shallower areas.</p>
<p>The overgrowth of algae, promoted by AN, could potentially be controlled by herbivores such as fish and sea urchins. Research conducted in Main Hawaiian Islands found that gazing functions on turf algae were more effectively maintained by grazers, browsers, or scrapers in the deeper waters (6-30&#xa0;m) compared to shallower areas (&lt; 6&#xa0;m; <xref ref-type="bibr" rid="B22">Foo and Asner, 2021</xref>). However, the effectiveness of herbivore consumption is often limited, primarily due to overfishing of coral reefs (<xref ref-type="bibr" rid="B53">Mumby et&#xa0;al., 2006</xref>). Moreover, dietary preferences of herbivores can affect grazing behavior (<xref ref-type="bibr" rid="B38">Lapointe et&#xa0;al., 2004</xref>). Many herbivorous fishes tend to preferentially feed on noncalcareous turf algae while showing a general disinterest in calcareous macroalgae (<xref ref-type="bibr" rid="B46">Littler and Littler, 1984</xref>). This dietary preference is also observed in dominant herbivores in the SCS, such as Scarus genera, <italic>Acanthurus triostegus</italic>, and Chaetodon species. Consequently, despite the higher fish density and relative abundance of herbivores in the Xisha Islands compared to the Luhuitou in northern SCS (<xref ref-type="bibr" rid="B70">Wu et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B44">Li et&#xa0;al., 2017</xref>), macroalgae cover tends to be greater in the former than the latter (<xref ref-type="bibr" rid="B10">Chen et&#xa0;al., 2019</xref>). In many cases, grazers struggle to effectively regulate macroalgae growth. Even slight changes in seawater nutrient levels can trigger macroalgal blooms, as found in Jamaica and southeast Florida, for example, where blooms occurred with as little as 1.0 &#xb5;M DIN and 0.1 &#xb5;M PO<sub>4</sub>
<sup>3-</sup> (<xref ref-type="bibr" rid="B35">Lapointe, 1997</xref>). It is important to note that the AN flux in this region often exceeds the nutrient thresholds required for macroalgal blooms.</p>
<p>To serve as potential refuges for corals, habitats with fewer disturbances and reduced thermal stress are essential (<xref ref-type="bibr" rid="B34">Kramer et&#xa0;al., 2019</xref>). For instance, in cases where shallow-water corals were subjected to elevated temperature or ultraviolet rays and suffered mortality, deep-water corals often survived, turning deep waters (&gt; 10&#xa0;m) into refuges for corals (<xref ref-type="bibr" rid="B57">Riegl and Piller, 2003</xref>). Moreover, research conducted on the Weizhou Island of China revealed that the shallow layer (1-3&#xa0;m) had lower live coral cover (1.7%) compared to the deeper layer (3-10&#xa0;m) with higher cover (10.4%; <xref ref-type="bibr" rid="B72">Yu et&#xa0;al., 2019</xref>). Our survey results supported this concept as we observed lower water temperatures (29.5-31.6&#xb0;C) in the deep layer compared to the shallower areas (where temperature ranged from 30.2&#xb0;C to 32.7&#xb0;C). However, this cooler environment in the deep layer may also make it suitable for the proliferation of macroalgae due to reduced exposure to solar radiation, ultraviolet radiation, and photoinhibition. As the euphotic layer in the SCS extends down to 80&#xa0;m (<xref ref-type="bibr" rid="B65">Tang et&#xa0;al., 2007</xref>), there is sufficient light penetration for algae photosynthesis even in deeper waters. Importantly, the influx of AN carried by monsoon winds into the SCS (<xref ref-type="bibr" rid="B75">Zhao et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B10">Chen et&#xa0;al., 2019</xref>) alleviates N limitation in the euphotic layer, thereby stimulating the growth of macroalgae.</p>
<p>Macroalgae are known for their diverse survival strategies, including predation tolerance, opportunism, or stress tolerance, which make them highly competitive in various benthic environments (<xref ref-type="bibr" rid="B46">Littler and Littler, 1984</xref>). They often pose a significant competition challenge to corals by inhibiting coral growth, calcification, reproduction, or colonization (<xref ref-type="bibr" rid="B50">Mccook, 1999</xref>; <xref ref-type="bibr" rid="B29">Hughes et&#xa0;al., 2007</xref>). Our survey of Yongle Atoll showed that live coral cover averaged only 8.8%, falling below the coral cover warning line of 10% (<xref ref-type="bibr" rid="B32">Kennedy et&#xa0;al., 2013</xref>). This status is comparable to some coastal coral reefs that experience heavy human disturbances, such as those in Daya Bay (15.3%; <xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2009</xref>), and Weizhou Island (10-15%) in the northern SCS (<xref ref-type="bibr" rid="B68">Wang et&#xa0;al., 2016</xref>). Moreover, our findings indicate that over 50% of survey sections had lower coral abundance in deeper waters compared to shallower areas, coinciding with the presence of abundant macroalgae in deeper regions. These results suggest that excessive AN supply may contribute to coral-algal phase shifts, restricting the potential for remote or deep-water areas to serve as refuges for corals in a warming ocean.</p>
<p>Many factors have been investigated as causes of coral reef declines, including climate warming, tropical cyclones, crown-of-thorns starfish outbreaks (<xref ref-type="bibr" rid="B52">Mellin et&#xa0;al., 2019</xref>), bottom trawling, and land-sourced pollutants entering the ocean through river runoff (<xref ref-type="bibr" rid="B48">Mallela et&#xa0;al., 2010</xref>). However, the influence of AN on coral reefs has received limited attention. AN deposition in our study region, estimated at 66 mmol N&#xb7;m<sup>-2</sup> during the summer monsoon season (April-September; 2000-2020) from the southwest of SCS, surpasses the estimates from all 31 monitoring stations around the SCS (55 mmol N&#xb7;m<sup>-2</sup>&#xb7;yr<sup>-1</sup>; 2000-2010; <xref ref-type="bibr" rid="B33">Kim et&#xa0;al., 2014</xref>). The higher AN flux is related to various factors, including fertilization and biomass burning in Southwest Asia (<xref ref-type="bibr" rid="B41">Latif et&#xa0;al., 2018</xref>). It has been noted that approximately two-thirds of the world&#x2019;s coral reefs are exposed to AN deposition levels similar to those in our study area. Moreover, coral reef regions in Asia, Southeast Asia, East and North Asia, and the U.S. Caribbean experience even higher AN deposition rates. Projections indicate a 50-100% increase in AN deposition into the SCS between, 2000 and, 2030, with a particularly severe increase (&gt; 200%) in the Coral Triangle, as well as the Red Sea, the Gulfs, and the SW Indian Ocean (<xref ref-type="bibr" rid="B10">Chen et&#xa0;al., 2019</xref>). The response of coral reefs worldwide to this substantial AN needs further research and attention.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusion</title>
<p>This study has identified coral-algae phase shifts in the remote coral reefs of SCS. Interestingly, we observed that the stress imposed by macroalgae on corals was more pronounced in deeper waters. Through laboratory experiments, we explained the cause-and-effect relationship between the AN deposition and coral-algae phase shifts. The findings indicate that AN supply efficiently promotes macroalgae growth. While a moderate amount of AN loading can mitigate coral bleaching, excessive AN, especially when the supply of N and P is imbalanced, significantly increases coral susceptibility to bleaching.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>YF: Writing &#x2013; Original, Formal analysis, Visualization. XC: Conceptualization, Methodology, Writing &#x2013; Original, Funding acquisition. YCL: Investigation, Data Curation, Writing &#x2013; Original. YXL: Investigation, Resources, Data curation. KY: Writing &#x2013; Review &amp; Editing, Funding acquisition. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was funded by the National Science Foundation of China (42076157 and, 42030502).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>The authors wish to acknowledge Prof. Huiwang Gao for his constructive suggestions for the study on atmospheric nitrogen deposition to the ocean.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2024.1214449/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2024.1214449/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.pdf" id="SM1" mimetype="application/pdf"/>
</sec>
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