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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2023.1229682</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Summer distribution of the Mediterranean sperm whale: insights from the acoustic Accobams survey initiative</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Lerebourg</surname><given-names>Clara</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2207671"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Boisseau</surname><given-names>Oliver</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1294936"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ridoux</surname><given-names>Vincent</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1265356"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Virgili</surname><given-names>Auriane</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1401821"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Observatoire Pelagis, Unit&#xe9; d&#x2019;appui et de recherche (UAR) 3462 Centre national de la recherche scientifique (CNRS) - La Rochelle Universit&#xe9;</institution>, <addr-line>La Rochelle</addr-line>, <country>France</country></aff>
<aff id="aff2"><sup>2</sup><institution>Marine Conservation Research (MCR)</institution>, <addr-line>Kelvedon</addr-line>, <country>United Kingdom</country></aff>
<aff id="aff3"><sup>3</sup><institution>Centre d&#x2019;Etudes Biologiques de Chiz&#xe9; - La Rochelle, Unit&#xe9; mixte de recherche (UMR) 7372 Centre national de la recherche scientifique (CNRS) - La Rochelle Universit&#xe9;</institution>, <addr-line>Villiers-en-Bois</addr-line>, <country>France</country></aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Roberto Carlucci, University of Bari Aldo Moro, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Giulia Cipriano, University of Bari Aldo Moro, Italy; Zhitao Wang, Ningbo University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Clara Lerebourg, <email xlink:href="mailto:claraa.lerebourg@gmail.com">claraa.lerebourg@gmail.com</email>
</p>
</fn>
<fn fn-type="present-address" id="fn002">
<p>&#x2020;Present address: Auriane Virgili, Share the Ocean, Larmor Baden, France</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>20</day>
<month>10</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1229682</elocation-id>
<history>
<date date-type="received">
<day>26</day>
<month>05</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>10</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Lerebourg, Boisseau, Ridoux and Virgili</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Lerebourg, Boisseau, Ridoux and Virgili</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The Mediterranean sperm whale population, <italic>Physeter macrocephalus</italic>, is listed as endangered due to population decline caused by human activities. To mitigate the impact of these activities, accurate knowledge of their distribution and abundance is crucial. During their long dives, sperm whales are not available to visual observation, but since they produce sounds when they dive, they are available to acoustic detection. Therefore, we aimed to use towed acoustic data to model their habitat and fill the knowledge gap on Mediterranean sperm whale distribution. Generalised additive models were used to link the number of sperm whales detected acoustically during the ACCOBAMS Survey Initiative in 2018 with different environmental variables integrated over different depth classes, encompassing the depth range used by the species for foraging. Sperm whale distribution was influenced by water temperature at the bottom, eddy kinetic energy between 200 and 600 m, as well as gradients of sea surface temperature and chlorophyll-a concentrations. The abundance of sperm whales was estimated at 2,959 individuals [2,077 - 4,265] in the sampled areas of the Mediterranean Sea. We predicted that sperm whales were mainly distributed in summer along the continental slope of the north-western Mediterranean basin from the Balearic Islands to the Ligurian Sea and off the Algerian coast. They were present throughout the western Mediterranean Sea and in the northern Ionian Sea. In contrast, predicted densities were low in the eastern part of the Mediterranean Sea. The use of acoustic data compensated for the main difficulty in studying sperm whales, the unavailability of animals at the surface during visual observation and the paucity of visual data. We thus encourage more systematic use of passive acoustics to study sperm whale distribution. The model highlighted a higher concentration of sperm whales in the western Mediterranean basin than in the eastern basin in summer, opening up avenues to improve the conservation of this endangered Mediterranean sub-population.</p>
</abstract>
<kwd-group>
<kwd>species distribution model</kwd>
<kwd>Mediterranean Sea</kwd>
<kwd>passive acoustic monitoring</kwd>
<kwd>sperm whale distribution</kwd>
<kwd><italic>Physeter macrocephalus</italic>
</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="75"/>
<page-count count="14"/>
<word-count count="7733"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Marine Megafauna</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>The Mediterranean sperm whale population, <italic>Physeter macrocephalus</italic> (<xref ref-type="bibr" rid="B38">Linnaeus, 1758</xref>), genetically different from the Atlantic populations, has been listed as endangered since 1982, due to apparent population decline and habitat loss caused by human activities (<xref ref-type="bibr" rid="B49">Notarbartolo di Sciara et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B58">Rendell and Frantzis, 2016</xref>). The Mediterranean sperm whale population is particularly exposed to various anthropogenic pressures, such as activities generating high-intensity noise (e.g., military sonar, maritime works or construction), fisheries that can lead to entanglements in drift nets, ship strikes, plastic ingestion, or exposure to chemical pollution (<xref ref-type="bibr" rid="B1">Aguilar et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B57">Reeves and Notarbartolo di Sciara, 2006</xref>; <xref ref-type="bibr" rid="B48">Notarbartolo-Di-Sciara, 2014</xref>). To mitigate the impact of these activities, accurate knowledge of sperm whale and other cetacean distribution and abundance is crucial for planning activities in the marine environment and implementing management measures (<xref ref-type="bibr" rid="B18">Douvere, 2008</xref>). Previous studies have provided some information on the distribution and relative abundance of sperm whales in the Mediterranean Sea, but knowledge gaps on their distribution persist (<xref ref-type="bibr" rid="B37">Lewis et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>). More generally, heterogeneous data collection in marine environments has resulted in large gaps in our understanding of cetacean distributions in the Mediterranean Sea (<xref ref-type="bibr" rid="B40">Mannocci et&#xa0;al., 2018</xref>).</p>
<p>Species distribution models (SDMs) are powerful tools for identifying mechanisms influencing species distribution (<xref ref-type="bibr" rid="B20">Elith and Leathwick, 2009</xref>). They allow establishing relationships between the number of detected animals and different environmental variables. They also allow predicting hotspots of densities (<xref ref-type="bibr" rid="B20">Elith and Leathwick, 2009</xref>). Among SDMs, generalised additive models (GAMs) are commonly used to model marine mammal distributions and study their habitat preferences as they are able to capture non-linear animal-habitat relationships (<xref ref-type="bibr" rid="B39">Mannocci et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B64">Tepsich et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B59">Roberts et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B70">Virgili et&#xa0;al., 2022</xref>). Static variables (e.g., bathymetry, slope) and surface dynamic variables (e.g., chlorophyll-a concentration, net primary production, surface temperature, sea surface height) are commonly considered (<xref ref-type="bibr" rid="B56">Praca et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B69">Virgili et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>). For species that spend much of their time underwater and feed at great depths on mesopelagic and bathypelagic prey, as is the case for sperm whales, it would seem more relevant to use environmental variables integrated over the water column (<xref ref-type="bibr" rid="B10">Brodie et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B70">Virgili et&#xa0;al., 2022</xref>). In <xref ref-type="bibr" rid="B70">Virgili et&#xa0;al. (2022)</xref>, the use of such variables increased the performance and the explanatory power of the models and improved the understanding of the distribution of sperm and beaked whales in the Bay of Biscay. <xref ref-type="bibr" rid="B10">Brodie et&#xa0;al. (2018)</xref> found that subsurface dynamic variables (isothermal layer depth, a proxy for the depth of surface mixing, and buoyancy frequency, a proxy for the stratification level of the water column) increased the explanatory power and predictive performance of the models for most species (sharks and swordfishes in the study). Therefore, environmental variables other than surface variables, such as those describing deep oceanographic processes, should also be used.</p>
<p>Most SDMs applied to deep-diving cetaceans are fitted to visual sightings (<xref ref-type="bibr" rid="B59">Roberts et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>). The sperm whale, however, can be difficult to observe at the surface because it spends much of its time at depth to forage. Sperm whales produce loud vocalisation, emitting series of regular echolocation clicks during dives (with a repetition rate between 0.5 and 2 clicks per second; <xref ref-type="bibr" rid="B27">Goold, 1995</xref>) and while foraging (<xref ref-type="bibr" rid="B74">Whitehead and Weilgart, 1991</xref>; <xref ref-type="bibr" rid="B3">Andreas et&#xa0;al., 2022</xref>). These clicks can be detected using passive acoustic monitoring (PAM) methods. These methods have been used since the First World War to detect underwater sounds, and it is a technology that has been developed, improved, and used by the scientific community to detect and identify marine mammals (<xref ref-type="bibr" rid="B11">Browning et&#xa0;al., 2017</xref>). <xref ref-type="bibr" rid="B54">Pirotta et&#xa0;al. (2020)</xref> used PAM methods and acoustic monitoring and showed that passive acoustic methods are valuable for studying the distribution of sperm whales. <xref ref-type="bibr" rid="B55">Poupard et&#xa0;al. (2022)</xref> were able to obtain sperm whale acoustic data over several seasons and years, showing the year-round presence of the species in the northwestern Pelagos sanctuary. They also highlight the importance of acoustic monitoring in understanding the distribution and activity of sperm whales in the region. PAM can thus be used to study species that have low availability during visual surveys.</p>
<p>Unlike visual sightings, animals can be detected acoustically in any light and weather conditions (e.g., day or night, or in fog; <xref ref-type="bibr" rid="B41">Marques et&#xa0;al., 2013</xref>). Hence, it seems more relevant to use acoustic data than visual data to study sperm whale distribution, as it has been done by <xref ref-type="bibr" rid="B54">Pirotta et&#xa0;al. (2020)</xref> in the Balearic Sea.</p>
<p>From June to September 2018, the Agreement on the Conservation of Cetaceans of the Black Sea, Mediterranean Sea and Contiguous Atlantic Area (ACCOBAMS) Survey Initiative (ASI) was conducted throughout the Mediterranean Sea. The aim of the ASI was to obtain new information on the distribution and abundance of cetaceans in the Mediterranean Sea in order to improve and strengthen measures to reduce the impacts of human activities on cetaceans. The survey had an aerial and a boat-based component. The boat-based component used towed hydrophones allowing the study of sperm whale distribution at a large-scale using PAM methods. The aerial component of the ASI also collected sightings of sperm whales but in limited numbers (Panigada et al., this special issue; Ca&#xf1;adas et al., this special issue).</p>
<p>In the present work, we aimed to study the sperm whale summer distribution in the Mediterranean Sea. We modelled sperm whale habitats using towed passive acoustic data and static variables, such as bathymetry, along with dynamic environmental variables integrated over the water column, including <italic>inter alia</italic> temperature, salinity, currents and chlorophyll-a. First, the detection function and the Effective Strip Widths (ESW) were estimated. Then, we extracted environmental variables and associated them with the effort data. We used GAMs to describe relationships between the number of sperm whales detected acoustically and the different environmental variables as well as to explain the mechanisms leading to a concentration of individuals. We finally predicted sperm whale densities over the whole Mediterranean Sea.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Study area</title>
<p>The study area encompassed the entire Mediterranean Sea (from 6&#xb0;W to 36&#xb0;E and from 30&#xb0;N to 46&#xb0;N). The Mediterranean Sea is a distinctive ecosystem with a relatively small continental shelf and a mostly cyclonic circulation. The water column in the Mediterranean Sea is divided into distinct water masses: (1) the surface waters, which extend between 0 and 200 m in depth, originate from the Atlantic and enter the Mediterranean Sea via the Strait of Gibraltar; (2) underneath, the intermediate Levantine water circulates, on average between 200 and 600 m, this is the warmest and saltiest water of the Mediterranean Sea; (3) below 600 m, the deep waters originate in part from the intermediate Levantine water (<xref ref-type="bibr" rid="B46">Millot and Taupier-Letage, 2005</xref>). Even if dives made by sperm whales do not generally exceed 1,500&#x2013;2,000 m (<xref ref-type="bibr" rid="B2">Amano and Yoshioka, 2003</xref>; <xref ref-type="bibr" rid="B31">Irvine et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B65">Towers et&#xa0;al., 2019</xref>), we chose to consider the entire water column, down to a depth of 4,100 m.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Data collection</title>
<p>The ASI survey is the first survey carried out at the Mediterranean basin scale for all cetacean species. Acoustic surveys were conducted using hydrophone arrays towed by the <italic>R/V Song-of-the-Whale</italic> (<xref ref-type="fig" rid="f1"><bold>Figure&#xa0;1</bold></xref>), a 21 m auxiliary-powered cutter-rigged sailing research vessel. A 400 m tow cable, close to the surface at a depth of less than 10 m, was used to isolate the array from any noise generated by the vessel. Acoustic data were collected 24 hours a day to maximise survey effort when water depth was appropriate (greater than 50 m). The vessel maintained a speed of 5 to 8 knots when surveying sperm whales to avoid bias due to animal movement by exceeding the speed of the target animals by 2-3 times (<xref ref-type="bibr" rid="B13">Buckland et&#xa0;al., 2015</xref>). The speed of sperm whales can vary between 2 and 6 knots (<xref ref-type="bibr" rid="B4">Arnbom et&#xa0;al., 1987</xref>), but they generally maintain an average speed of 2.1 knots (<xref ref-type="bibr" rid="B73">Whitehead, 2018</xref>). A pair of AQ-4 elements (Teledyne Benthos) was incorporated into the hydrophone array. They were characterised by a receiving sensitivity of -201 dB re 1V/&#xb5;Pa and a flat frequency response ( &#xb1; 1.5 dB) from 1 Hz to 30 kHz. Pre-amplifiers (29 dB gain) were use to prevent voltage-drop between the array and the vessel. A distance of 3 m separated each hydrophone element. A SAIL DAQ card (SA Instrumentation) digitised the array outputs at 48 kHz using a 10 Hz high pass filter and a 12 dB gain added to the signal. A click detector module was used to detect candidate sperm whale clicks in real time using PAMGuard (<xref ref-type="bibr" rid="B26">Gillespie et&#xa0;al., 2008</xref>). The click detector identified spectral properties, with most energy at or below 12 kHz (<xref ref-type="bibr" rid="B71">Watkins, 1980</xref>; <xref ref-type="bibr" rid="B47">M&#xf8;hl et&#xa0;al., 2003</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Performed effort transects and acoustic detections of sperm whales collected during the ASI survey in the Mediterranean Sea in 2018. The background map represents the bathymetry (in meters; <uri xlink:href="https://www.emodnet-bathymetry.eu/">https://www.emodnet-bathymetry.eu/</uri>), black lines represent the transects and pink points the acoustic detections. The numbers are the names of the different regions in the Mediterranean Sea: 1 Alboran Sea; 2 Algerian Basin; 3 Liguro-Proven&#xe7;al Basin; 4 Tyrrhenian Sea; 5 Ionian Basin; 6 Levantine Basin.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g001.tif"/>
</fig>
<p>A line transect distance sampling protocol was used during the survey and the perpendicular distances for each detection were estimated in PAMGuard using the target motion analysis tool. Sperm whale clicks were identified, analysed and validated by the Marine Conservation Research (MCR; Boisseau et&#xa0;al., this special issue).</p>
<p>The effort transects were linearised and segmented into 10 km segments for which the detection conditions were homogeneous. Each acoustic detection was then attributed to the effort segment on which the animals were detected (<xref ref-type="fig" rid="f1"><bold>Figure&#xa0;1</bold></xref>).</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Detection functions and ESWs</title>
<p>During an at-sea survey, not all animals are detected acoustically; the probability of detecting an animal decreases with the distance from the transect and as detection conditions degrade. A detection function was therefore fitted to the acoustic data using Multiple Covariate Distance Sampling models (MCDS; <xref ref-type="bibr" rid="B45">Miller et&#xa0;al., 2019</xref>). The models were fitted considering two key distributions, half normal (hr) and hazard rate (hz) and different detection conditions (sea state, wave height in meters and wind speed in knots). The best model was selected according to the Kolmogorov-Smirnov and Cramer-von Mises goodness-of-fit tests and the Akaike information criterion (AIC; <xref ref-type="bibr" rid="B12">Buckland et&#xa0;al., 1993</xref>). The models were fitted using the &#x2018;dfuncEstim&#x2019; function of the &#x2018;Rdistance&#x2019; package (<xref ref-type="bibr" rid="B42">McDonald et&#xa0;al., 2019</xref>) and the two tests mentioned above were performed using the &#x2018;gof_ds&#x2019; function of the &#x2018;Distance&#x2019; package (<xref ref-type="bibr" rid="B45">Miller et&#xa0;al., 2019</xref>). Based on the detection function, ESWs were estimated for each class of the selected detection variable. An ESW is defined so that the number of objects detected beyond this distance is equal to the number of objects not detected before this limit (<xref ref-type="bibr" rid="B12">Buckland et&#xa0;al., 1993</xref>). ESWs were calculated using the &#x2018;ESW&#x2019; function of the &#x2018;Rdistance&#x2019; package (<xref ref-type="bibr" rid="B42">McDonald et&#xa0;al., 2019</xref>).</p>
<p>The number of individuals detected was determined by using a click detector module in PAMGuard (<xref ref-type="bibr" rid="B26">Gillespie et&#xa0;al., 2008</xref>) which was configured to identify potential sperm whale clicks. Field recordings were independently assessed in PAMGuard by two experienced analysts to identify potential sperm whale click sequences. Candidate clicks were identified when they formed part of a click sequence, characterised by consistent bearings and regularly spaced click intervals. Variations in bearing information were used to distinguish individual click sequences (<xref ref-type="bibr" rid="B36">Lewis et&#xa0;al., 2018</xref>). Consequently, acoustic detections were made at the individual level rather than at the group level, allowing the number of detected animals to be determined.</p>
<p>Knowing the ESWs and the number of individuals detected, it was possible to estimate the density of individuals along the transects. This density was then multiplied by the total area sampled during the survey (here 1,312,625 km&#xb2;) to obtain the total abundance of sperm whales and the associated confidence intervals (<xref ref-type="bibr" rid="B12">Buckland et&#xa0;al., 1993</xref>).</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Environmental data processing</title>
<sec id="s2_4_1">
<label>2.4.1</label>
<title>Delimitation of depth classes</title>
<p>In order to determine whether the presence of sperm whales would be related to processes at the surface or in the water column, four depth classes were delimited according to the water masses of the Mediterranean Sea: the surface, between 0 and 200 m, 200 and 600 m, 600 m and 4,100 m. Environmental variables were extracted for each depth class.</p>
</sec>
<sec id="s2_4_2">
<label>2.4.2</label>
<title>Static and oceanographic variables</title>
<p>We extracted static and dynamic variables from January 1<sup>st</sup>, 2000 to December 31<sup>st</sup>, 2021 over the entire Mediterranean Sea with a spatial resolution of 0.042&#xb0;x0.042&#xb0; and a monthly temporal resolution (<xref ref-type="table" rid="T1"><bold>Table&#xa0;1</bold></xref>). We considered variables that can putatively affect the distribution of sperm whales by mediating food availability. Static variables remain stable over time and are independent of depth classes while dynamic variables, which vary with time, were extracted for the four depth classes previously defined.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Environmental variables used for sperm whale density modelling in the Mediterranean Sea.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Environmental variables (unit)</th>
<th valign="top" align="left">Source</th>
<th valign="top" align="left">Interest of variables (<xref ref-type="bibr" rid="B67">Virgili et al., 2019</xref>)</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="top" colspan="3" align="left">Statics</th>
</tr>
<tr>
<td valign="top" align="left">Bathymetry</td>
<td valign="top" align="left">A</td>
<td valign="top" align="left">Shallow waters can be associated with high primary production</td>
</tr>
<tr>
<td valign="top" align="left">Slope (&#xb0;)</td>
<td valign="top" align="left">A</td>
<td valign="top" rowspan="3" align="left">In combination with currents, high slopes induce aggregation of prey or primary production</td>
</tr>
<tr>
<td valign="top" align="left">Topographical complexity index</td>
<td valign="top" align="left">A</td>
</tr>
<tr>
<td valign="top" align="left">Slope orientation (m)</td>
<td valign="top" align="left">A</td>
</tr>
<tr>
<td valign="top" align="left">Roughness (m)</td>
<td valign="top" align="left">A</td>
<td valign="top" align="left">High roughness indicates a large escarpment and greater prey richness</td>
</tr>
<tr>
<th valign="top" colspan="3" align="left">Dynamics</th>
</tr>
<tr>
<td valign="top" align="left">temperature (&#xb0;C)</td>
<td valign="top" align="left">B</td>
<td valign="top" rowspan="2" align="left">The variability in horizontal temperature gradients over time reveals the location of fronts, potentially associated with prey aggregation or increased primary production.</td>
</tr>
<tr>
<td valign="top" align="left">Gradients of temperature (&#xb0;C)</td>
<td valign="top" align="left">B</td>
</tr>
<tr>
<td valign="top" align="left">Currents (m<sup>2</sup>.s<sup>-2</sup>)</td>
<td valign="top" align="left">B</td>
<td valign="top" rowspan="2" align="left">Strong currents induce the mixing of waters and aggregation of prey.</td>
</tr>
<tr>
<td valign="top" align="left">gradients of currents (m<sup>2</sup>.s<sup>-2</sup>)</td>
<td valign="top" align="left">B</td>
</tr>
<tr>
<td valign="top" align="left">EKE &#x2013; Eddy Kinetic energy (m<sup>2</sup>.s<sup>-2</sup>)</td>
<td valign="top" align="left">B</td>
<td valign="top" rowspan="2" align="left">High EKE is related to the development of eddies and sediment resuspension leading to prey aggregation</td>
</tr>
<tr>
<td valign="top" align="left">Gradient of the eddy kinetic (m<sup>2</sup>.s<sup>-2</sup>)</td>
<td valign="top" align="left">B</td>
</tr>
<tr>
<td valign="top" align="left">Chlorophyll-a concentration (mg.m<sup>-3</sup>)</td>
<td valign="top" align="left">B</td>
<td valign="top" rowspan="2" align="left">Chlorophyll concentration is an indicator of the resources available for prey, and thus of the availability of prey.</td>
</tr>
<tr>
<td valign="top" align="left">Chlorophyll-a concentration gradient (mg.m<sup>-3</sup>)</td>
<td valign="top" align="left">B</td>
</tr>
<tr>
<td valign="top" align="left">Net primary production (mg.m<sup>-3</sup>.j<sup>-1</sup>)</td>
<td valign="top" align="left">B</td>
<td valign="top" rowspan="2" align="left">Net primary production is an indicator of prey availability.</td>
</tr>
<tr>
<td valign="top" align="left">Net primary production gradient (mg.m<sup>-3</sup>.j<sup>-1</sup>)</td>
<td valign="top" align="left">B</td>
</tr>
<tr>
<td valign="top" align="left">Height from sea level (m)</td>
<td valign="top" align="left">B</td>
<td valign="top" align="left">High sea level is associated with high mesoscale activity and increased prey aggregation or primary production.</td>
</tr>
<tr>
<td valign="top" align="left">Depth of the mixing layer (m)</td>
<td valign="top" align="left">B</td>
<td valign="top" align="left">Indicator of prey availability.</td>
</tr>
<tr>
<td valign="top" align="left">Potential temperature at the bottom of the sea (&#xb0;C)</td>
<td valign="top" align="left">B</td>
<td valign="top" align="left">The hunting depth of deep divers is not really known, the temperature of the sea floor may have an impact on their distribution</td>
</tr>
<tr>
<td valign="top" align="left">Salinity</td>
<td valign="top" align="left">B</td>
<td valign="top" align="left">Sudden changes in salinity reveal the location of fronts, potentially associated with prey aggregation or increased primary production.</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>All dynamic variables were extracted or calculated for each depth class (surface, 0-200 m, 200-600 m and 600-2000 m), from January 1<sup>st</sup>, 2000 to December 31<sup>st</sup>, 2021, at a spatial resolution of 0.042&#xb0;x0.042&#xb0;. Monthly means and standard deviations were calculated. Source A: Emodnet (<ext-link ext-link-type="uri" xlink:href="https://www.emodnet-bathymetry.eu/">https://www.emodnet-bathymetry.eu/</ext-link>); Source B: Copernicus (<ext-link ext-link-type="uri" xlink:href="https://data.marine.copernicus.eu/products?facets=areas%7EMediterranean+Sea">https://data.marine.copernicus.eu/products?facets=areas%7EMediterranean+Sea</ext-link>).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>For static variables, bathymetry was initially extracted from the Emodnet database (<ext-link ext-link-type="uri" xlink:href="https://www.emodnet-bathymetry.eu/">https://www.emodnet-bathymetry.eu/</ext-link>). From bathymetry, the slope (in degrees), roughness (in m), slope orientation (in m), and topographic complexity index were calculated using the &#x2018;terrain&#x2019; function from the &#x2018;Raster&#x2019; package (<xref ref-type="bibr" rid="B30">Hijmans and Van Etten, 2012</xref>).</p>
<p>Regarding dynamic variables, temperature, salinity, current velocity, sea surface height, mixing layer depth, chlorophyll-a concentration and net primary production were extracted from Copernicus (<ext-link ext-link-type="uri" xlink:href="https://data.marine.copernicus.eu/products?facets=areas%7EMediterranean+Sea">https://data.marine.copernicus.eu/products?facets=areas%7EMediterranean+Sea</ext-link>). From these variables, we computed spatial gradients of temperatures and currents, and eddy kinetic energy (EKE = 0.5*(U&#xb2;&#x2009;+&#x2009;V&#xb2;), where U and V are the current components). Gradients of temperatures and currents were calculated as the difference between the minimum and maximum temperature values found in the eight pixels surrounding any given pixel of the grid (function &#x2018;detectFronts&#x2019; from the R package &#x2018;grec&#x2019;; <xref ref-type="bibr" rid="B35">Lau-Medrano, 2020</xref>). For each depth layer and each variable, climatological means over the 22 years of extracted data and standard deviations were calculated to assess the relevance of the variability of the variables. It means that for each month of the survey, the mean and standard deviation of the month over all years were calculated. Finally, each variable of each depth class was associated with the effort segments (<xref ref-type="supplementary-material" rid="SM1"><bold>Appendix 1</bold></xref>).</p>
</sec>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>Habitat-based density modelling</title>
<sec id="s2_5_1">
<label>2.5.1</label>
<title>Model selection</title>
<p>In order to determine which environmental variables best explained the distribution of sperm whales in the Mediterranean Sea, GAMs were fitted using the &#x2018;gam&#x2019; function of the &#x2018;mgcv&#x2019; package (<xref ref-type="bibr" rid="B75">Wood, 2017</xref>) with a Tweedie distribution (very close to a Poisson distribution but allowing for some over-dispersion of the data; <xref ref-type="bibr" rid="B22">Foster and Bravington, 2013</xref>). We removed combinations of variables with Pearson correlation coefficients higher than |0.5| and tested all models with combinations of one to four variables to avoid excessive complexity (<xref ref-type="bibr" rid="B39">Mannocci et&#xa0;al., 2014</xref>). The mean number of individuals per segment was linked to the additive predictors with a log function with four degrees of freedom. An offset equal to segment length multiplied by twice the ESW was included. For each tested model, AIC, explained deviance and Akaike weight were calculated (<xref ref-type="bibr" rid="B14">Burnham and Anderson, 2004</xref>; <xref ref-type="bibr" rid="B63">Symonds and Moussalli, 2011</xref>). The model with the lowest AIC and the highest explained deviance and Akaike weight was selected.</p>
</sec>
<sec id="s2_5_2">
<label>2.5.2</label>
<title>Prediction and extrapolation</title>
<p>A prediction grid, which covered the entire Mediterranean Sea, was created for each month of the summer (May to September) with a 0.042&#xb0; spatial resolution. The selected model was used to predict the density of sperm whales in the whole study area with the &#x2018;predict&#x2019; function of the &#x2018;mgcv&#x2019; package (<xref ref-type="bibr" rid="B75">Wood, 2017</xref>). Finally, the monthly predictions were averaged over the entire survey period and standard error associated with the prediction was calculated to estimate the uncertainty of our prediction.</p>
<p>We conducted a gap analysis on environmental space coverage to identify areas where habitat models could produce reliable predictions outside survey blocks, that is, geographical extrapolation, whilst remaining within the ranges of surveyed conditions for the combinations of covariates selected by the models, that is, areas of environmental interpolation (<xref ref-type="bibr" rid="B40">Mannocci et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B9">Bouchet et&#xa0;al., 2020</xref>). We used the &#x2018;map_extrapolation&#x2019; function of the &#x2018;dsmextra&#x2019; package (<xref ref-type="bibr" rid="B9">Bouchet et&#xa0;al., 2020</xref>). The obtained map was represented according to two conditions, the interpolated data (which varied between 0 and 1) and the extrapolated data (which were lower than -1). The concept of nearest neighbour (percentage of data in close proximity) provides an additional measure of the reliability of extrapolations in a multivariate environmental space (<xref ref-type="bibr" rid="B40">Mannocci et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B9">Bouchet et&#xa0;al., 2020</xref>). The higher the percentage, the better the prediction.</p>
<p>Finally, for the selected model, the Normalised Root Mean Square Error (NRMSE) was calculated. The NRMSE is an index of the quality of the prediction, it represents the percentage of error related to the prediction (<xref ref-type="bibr" rid="B17">Dirwai et&#xa0;al., 2021</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Raw data</title>
<p>In total, 13,806 km of transects were conducted by boat during the ASI survey, of which 97.17% were carried out in good conditions (Beaufort sea state &#x2264; 4). The final dataset included 284 acoustic detections of sperm whales. The majority of these detections were recorded in the western Mediterranean basin and along the Hellenic Trench.</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Estimation of the detection function and ESWs</title>
<p>The wind speed variable associated with a hazard rate key function best explained the distribution of sperm whale detections as a function of distance from the transect (<xref ref-type="supplementary-material" rid="SM1"><bold>Appendix 2</bold></xref>, <xref ref-type="supplementary-material" rid="SM1"><bold>3</bold></xref>). The qqplot suggested a good fit.</p>
<p>As the distance from the transect increased, the probability of detecting sperm whales decreased more rapidly as wind speed increased (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>). Consequently, as the wind speed increased, the estimated ESWs decreased (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3</bold></xref>). When the wind speed was &lt; 5 knots, the estimated ESW was 4.88 km, while when the wind was &gt; 25 knots the estimated ESW was 3.14 km.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Probability of detection as a function of the distance from the transect (in km). A hazard rate distribution was fitted to all detection data and a detection function was estimated for each class of wind speed. class 0: from 0 to 5 knots, class 1: from 5 to 10 knots, class 2: from 10 to 15 knots, class 3: from 15 to 20 knots, class 4: from 20 to 25 knots, class 5: above 25 knots.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Effective strip widths and associated 95% confidence intervals estimated for each class of wind speed. Class 0: from 0 to 5 knots, class 1: from 5 to 10 knots, class 2: from 10 to 15 knots, class 3: from 15 to 20 knots, class 4: from 20 to 25 knots, class 5: above 25 knots.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g003.tif"/>
</fig>
<p>Based on the detection function and the ESWs, the abundance of sperm whales in the surveyed blocks was estimated at 2,959 individuals [2,077 - 4,265]. It was a global estimate produced for the sampled areas of the Mediterranean Sea (i.e., in the Western Mediterranean Sea and in the Ionian Basin).</p>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Habitat modelling</title>
<sec id="s3_3_1">
<label>3.3.1</label>
<title>GAM selection</title>
<p>The selected model explained 38.8% of the deviance and the NRMSE calculation resulted in an error of 5.4%. The highest relative densities were estimated for average gradients of temperature at the surface greater than 0.1&#xb0;C, a standard deviation of eddy kinetic energy between 200 and 600 m around 0.004 m&#xb2;.s<sup>-2</sup>, a chlorophyll-a concentration around 0.06 mg.m<sup>-3</sup> and a low variation in the standard deviation of the bottom temperature (around 0.1&#xb0;C; <xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Relationships obtained between the relative density of sperm whales (individuals per km&#xb2;) and the explanatory variables of the selected GAM. Solid lines represent the estimated smooth functions and blue shaded regions show the approximate 95% confidence intervals. Sd-BottomT: standard deviation of the bottom temperature; m-CHL-surface: mean concentration of chlorophyll-a in the surface layer; sd-EKE-200-600: standard deviation of the eddy kinetic energy between 200 and 600m; m-GrT-surface: mean temperature gradient at the surface.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g004.tif"/>
</fig>
</sec>
<sec id="s3_3_2">
<label>3.3.2</label>
<title>Prediction and extrapolation</title>
<p>The model predicted higher densities of sperm whales in the western Mediterranean basin than in the eastern basin. In the western basin, the most favourable environmental conditions for sperm whales were found in the east of the Corsican coast and in the north of the Balearic Sea, but also in the Liguro-Proven&#xe7;al, Ionian, and Algerian basins where sperm whale densities reached 0.05 individuals.km<sup>-</sup>&#xb2;. The model predicted average sperm whale densities of around 0.03 individuals.km<sup>-</sup>&#xb2; in the entire western Mediterranean basin. Almost no individuals were predicted in the Alboran Sea, the Gulf of Lions and along the Spanish coast (<xref ref-type="fig" rid="f5"><bold>Figure&#xa0;5</bold></xref>). In the eastern basin, the highest densities of sperm whales were predicted in the Ionian basin and along the Hellenic Trench and no individuals were predicted in the Adriatic Sea, the Aegean Sea and the south and the east of the basin. The values of the uncertainties associated with the prediction were very low, mainly around 0.0005 individuals.km<sup>-2</sup> in the Liguro-Proven&#xe7;al and Algerian basins where the predictions were the highest.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Mean predicted summer densities of sperm whales over the entire sampling period in individuals.km<sup>-</sup>&#xb2; (June to September; <bold>A</bold>) and the uncertainty associated with the predictions <bold>(B)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g005.tif"/>
</fig>
<p>Predictions were environmentally extrapolated, and should therefore be taken with caution, in the Adriatic Sea, the Levantine Basin and east of Tunisia (<xref ref-type="fig" rid="f6"><bold>Figure&#xa0;6</bold></xref>). They were interpolated everywhere else. The percentage of nearby data reached 25% in the whole of the western Mediterranean Sea and the Ionian Sea south of Italy (<xref ref-type="fig" rid="f7"><bold>Figure&#xa0;7</bold></xref>). The model performs well in all these areas.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Map of extrapolation (in red; the more negative the value, the greater the extrapolation) and interpolation of predictions (in green; the closer the value is to 1, the greater the interpolation). Red areas represent the extrapolation areas where predictions are considered less reliable than in green areas because they were not sampled during the survey. The blue areas represent the absence of information on the extrapolation or interpolation of the data.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g006.tif"/>
</fig>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Map showing the percentage of nearby data. The areas with the highest percentage of nearby neighbour are the areas with the most reliable predictions because they were properly sampled during the survey. For cells outside the sampled areas, data from neighbouring cells that were sampled are used to inform predictions in the extrapolation areas.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1229682-g007.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>Methodological considerations</title>
<p>The ASI survey filled gaps in the overall summer distribution of sperm whales in the Mediterranean Sea, as it was the first to be conducted at such a large scale (<xref ref-type="bibr" rid="B40">Mannocci et&#xa0;al., 2018</xref>). We obtained maps of the summer distribution with a low error rate.</p>
<p>As sperm whales are deep divers that spend most of their time underwater foraging (dives of up to 138 minutes during foraging; <xref ref-type="bibr" rid="B72">Watwood et&#xa0;al., 2006</xref>), they are more easily detected by passive acoustics thanks to the echolocation clicks they emit almost permanently while diving. Indeed, during the vessel survey, only 26 visual detections were recorded compared to 284 acoustic detections. Although the detection rate was ten times higher using acoustic techniques, all animals were not detected because sperm whales typically do not vocalise when at the surface (<xref ref-type="bibr" rid="B72">Watwood et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B21">Fais et&#xa0;al., 2016</xref>) and/or individuals may have been beyond the detection range of the hydrophone array. On average, sperm whales dive for 45 minutes and emit sounds and clicks for 81% of the dive, making them easy to detect acoustically (<xref ref-type="bibr" rid="B72">Watwood et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B21">Fais et&#xa0;al., 2016</xref>). Furthermore, as they emit clicks at relatively low frequencies (&#x2264;12 kHz), they can be detected over long distances. The ESW was estimated to be between 0.5 and 1.7 km visually (<xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>), whereas acoustically it was estimated to be between 3.14 and 4.88 km. The detection capabilities of the acoustic platform are significantly higher.</p>
<p>The total abundance of sperm whales was estimated at 2,959 individuals [2,077 - 4,265] in the surveyed blocks (i.e., in the Western Mediterranean Sea and in the Ionian Basin). It was similar to or greater than the estimates obtained in previous studies. <xref ref-type="bibr" rid="B36">Lewis et&#xa0;al. (2018)</xref> have acoustically detected 194 sperm whales in the entire Mediterranean Sea. The various surveys took place in 2004 in the western basin and spread over several years, 2003, 2007 and 2013 in the entire eastern basin. They estimated an abundance of 1,842 sperm whales [842 &#x2013; 2,842] in the entire Mediterranean Sea. <xref ref-type="bibr" rid="B55">Poupard et&#xa0;al. (2022)</xref> have acoustically detected 422 sperm whales in the Pelagos sanctuary over 147 days of recording. They estimated a density of 0.00169 individuals.km<sup>-2</sup> in the sanctuary. Our model predicted average sperm whale densities of 0.03 individuals.km<sup>-</sup>&#xb2; throughout the western Mediterranean basin. <xref ref-type="bibr" rid="B25">Gannier (2018)</xref> have visually (from 1988 to 2012) and acoustically (since 1994) recorded 157 detections of sperm whales in the western Mediterranean basin. They estimated a population size between 200 and 1,000 individuals in the North-Western Mediterranean Sea.</p>
<p>Using acoustics to detect sperm whales is therefore an effective method to estimate their abundance. In the future, it would be interesting to develop more systematic acoustic surveys when targeting deep divers (mainly sperm whales and Cuvier&#x2019;s beaked whale <italic>Ziphius cavirostris</italic>), while continuing to use visual observation for other species.</p>
<p>However, the main limitation associated with the use of acoustic detection is the estimation of the number of individuals (<xref ref-type="bibr" rid="B32">Kimura et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B41">Marques et&#xa0;al., 2013</xref>). It is difficult to distinguish individuals that emit sounds at similar frequencies in an acoustic recording unless they emit a sound simultaneously. This can lead to an underestimation of the abundance.</p>
<p>In this study, we were able to predict the summer sperm whale distribution throughout the Mediterranean Sea. However, to highlight a change in species distribution throughout the year, the same survey should be conducted at least in winter. Lack of data is a recurrent problem in cetacean habitat modelling; there are very few surveys conducted outside the summer periods creating seasonal gaps (<xref ref-type="bibr" rid="B40">Mannocci et&#xa0;al., 2018</xref>). Although we showed that sperm whale detection was influenced by wind speed, the estimated ESW with a wind speed of 25 knots was high (3.14 km), so sperm whales would probably be well detected even in winter conditions. However, detection rates for other species, such as dolphins, may decrease in elevated sea states. <xref ref-type="bibr" rid="B61">Shabangu et&#xa0;al. (2022)</xref>, for example, suggest that high wind speeds induce a decrease in cetacean acoustic detectability due to increased ambient noise. Such a large-scale survey targeting only sperm whales would therefore not be cost-effective. However, other possibilities exist, such as deploying passive acoustic hydrophones on moorings, buoys, or vessels, which would record sounds throughout the year. Fixed buoys are very effective at assessing the seasonal presence of species at local scales (<xref ref-type="bibr" rid="B44">Mellinger et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B62">Stafford et&#xa0;al., 2007</xref>). However, they are less suitable for studying animal habitat use, at least at a large scale. This would require the installation of extensive buoy networks, which are very costly and require regular calibration to ensure accurate results (<xref ref-type="bibr" rid="B60">Shabangu and Findlay, 2014</xref>). In this case, a large-scale survey using towed acoustics seems more appropriate.</p>
<p>Although we predicted the sperm whale distribution in the entire Mediterranean Sea, the sampling effort was not uniform throughout the area. The gap analysis identified the eastern part of the Mediterranean basin, especially the Levantine basin, as an extrapolation area. This suggests that the sampling effort was not sufficient in this area and a more intensive sampling effort could help better describe the habitat used by sperm whales in the eastern Mediterranean Sea. More research is needed in the east as anthropogenic pressures are high for sperm whales (e.g., ship strike risk in the Hellenic Trench) and therefore we need to improve our understanding of distribution and seasonal variation.</p>
<p>We expected Beaufort sea state to be selected in the detection function because cetacean detection, notably visual detection, is often affected by sea state. Here, the wind speed was selected as the variable most affecting the acoustic detection; the higher the wind speed the lower the detection probability. This is consistent with the fact that Beaufort sea state is a subjective measure of wind speed as perceived by a visual appreciation of the effect of wind on the water surface (<xref ref-type="bibr" rid="B6">Barlow, 2015</xref>). Ambient noise, generated by the boat, but also by all processes other than cetacean sounds, would probably be a more important factor to consider when assessing the acoustic detectability of cetaceans. We encourage the systematic recording of ambient noise levels in future acoustic surveys.</p>
<p>We choose to use GAMs in this study because of their ability to handle non-linear and non-monotonic relationships; GAMs are relevant for modelling ecological relationships (<xref ref-type="bibr" rid="B8">Booth and Hammond, 2014</xref>). In GAMS, the explained deviance is an indicator of model quality. Deviance is rarely high for cetaceans because the variables used do not fully explain the distribution of animals, as they are proxies of prey distribution. In contrast, a high deviance would have indicated an over-fitting of the relationships to the data. The value of the selected model was 38.8%, which is a good result, similar to other studies (<xref ref-type="bibr" rid="B5">Bailey and Thompson, 2009</xref>; <xref ref-type="bibr" rid="B64">Tepsich et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B69">Virgili et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B66">Virgili, 2018</xref>; <xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>). We were rather confident in the model as the explained deviance was quite high but not too high and the NRMSE calculation gave a result of 5.4% error, indicating a low prediction error rate.</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Model improvement</title>
<p>The good performance of the model may be related to the use of proxies that are probably more direct than the commonly used surface variables. Environmental variables were separated according to the water masses of the Mediterranean Sea, which were assumed to be homogeneous. However, as sperm whales can dive much deeper than 1,000 m (<xref ref-type="bibr" rid="B73">Whitehead, 2018</xref>), we might have considered other depth classes. Particularly, the 600-4,100 m layer may not have been sufficiently precise for a deep-diver that feeds in this layer depth. We might consider splitting the deepest layer to be consistent with the depths used by the sperm whales. However, this would lead to a considerable increase in the number of variables and calculation time, as well as a possible lack of variation between depth classes, as water masses tend to be more homogeneous at greater depths.</p>
<p>In addition, other environmental and biological variables could have been considered. Some studies use other variables to study cetacean distribution such as the distribution and concentration of prey species (<xref ref-type="bibr" rid="B51">Pendleton et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B68">Virgili et&#xa0;al., 2021</xref>) or canyon areas, because submarine canyons are widely recognised as hotspots in cetacean distribution (<xref ref-type="bibr" rid="B64">Tepsich et&#xa0;al., 2014</xref>). <xref ref-type="bibr" rid="B51">Pendleton et&#xa0;al. (2020)</xref> suggested that using modelled prey availability, rather than oceanographic proxies, could be important to forecast species distributions. In contrast, in <xref ref-type="bibr" rid="B68">Virgili et&#xa0;al. (2021)</xref>, the model that used prey distributions obtained from the SEAPODYM model did not accurately model the prey of deep-diving cetaceans, the simulated prey mostly corresponded to the prey of the prey targeted by deep-divers. The SEAPODYM model is a tool for simulating the three-dimensional distributions of prey species in marine ecosystems. It considers various factors such as physical oceanography, prey behaviour, and predator-prey interactions to estimate the spatial distribution of prey. To study the distribution of deep divers, it therefore seems more relevant to use proxies that characterise the water column rather than the distribution of their prey, which is not modelled well enough.</p>
<p>Similarly, it might have been relevant to study anthropogenic pressures such as the impact of noise pollution on sperm whale distribution in order to find out whether these have a direct negative effect on sperm whale distribution. <xref ref-type="bibr" rid="B55">Poupard et&#xa0;al. (2022)</xref> analysed the ambient noise recorded by two hydrophones on a 25 m depth buoy to identify the impact of noise pollution (high or low ambient noise) on sperm whales. They showed that sperm whales were present all year round in the Mediterranean Sea, but their abundance decreased when the ambient noise was high due to the presence of ships such as ferries. This is particularly true near the coast where the anthropogenic noise is very high (<xref ref-type="bibr" rid="B15">Buscaino et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B52">Pieretti et&#xa0;al., 2020</xref>). <xref ref-type="bibr" rid="B55">Poupard et&#xa0;al. (2022)</xref> suggested that sperm whales do not come close to ships because ambient noise masks their echolocation when foraging. In addition, many studies have shown that cetaceans would modify their vocalisations in the vicinity of vessels and increase their sound level to maintain acoustic contact with other individuals (<xref ref-type="bibr" rid="B16">Castellote et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B43">Melc&#xf3;n et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B61">Shabangu et&#xa0;al., 2022</xref>).</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Sperm whale summer distribution in the Mediterranean Sea</title>
<p>Sperm whales were predicted in areas associated with high gradients of temperatures at the surface, strong variations in the current velocity between 200 and 600 m, low variations in sea bottom temperatures and rather low chlorophyll-a concentrations in the surface layer. In the literature, sperm whales have often been associated with bathymetric features, such as depth, continental slopes or canyons and seamounts, as well as frontal systems and other mesoscale features such as cyclonic eddies (<xref ref-type="bibr" rid="B67">Virgili et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B54">Pirotta et&#xa0;al., 2020</xref>). Recently, <xref ref-type="bibr" rid="B70">Virgili et&#xa0;al. (2022)</xref> have shown that other parameters influence the distribution of sperm whales at the surface and at depth, such as temperatures and eddies at depth. We also showed that two of the selected variables in the model characterised the water column and not the surface (the standard deviation of the sea floor temperature and the standard deviation of the eddy kinetic energy between 200 and 600 m). For species such as sperm whales, it is therefore relevant to consider the whole environment and not only the surface.</p>
<p>The model predicted average sperm whale densities around 0.03 individuals.km<sup>-</sup>&#xb2; in the entire western Mediterranean basin, with maximum densities predicted in the Algerian and Ligurian-Proven&#xe7;al basins, more precisely in the Ligurian Sea and off the Gulf of Lion continental slope. The highest densities were predicted in the protected area of the Pelagos sanctuary (Ligurian Sea). In comparison, <xref ref-type="bibr" rid="B36">Lewis et&#xa0;al. (2018)</xref> predicted 2,12.10<sup>-3</sup> individuals per km&#xb2; in the southern part of the western Mediterranean Sea and 0,12.10<sup>-3</sup> individuals per km&#xb2; in the eastern Mediterranean Sea (with, however, high densities in the Aegean Sea, the Hellenic Trench and the northern Ionian Sea). Our predictions in the southern part of the western Mediterranean Sea coincide with their results.</p>
<p>In summer, sperm whales seemed to concentrate mainly in continental slope areas, whether off the Gulf of Lion, the Liguro-Proven&#xe7;al Sea, the Algerian Coast or around Corsica, frequenting depths above 2,000 m (<xref ref-type="bibr" rid="B25">Gannier, 2018</xref>; <xref ref-type="bibr" rid="B34">Laran et&#xa0;al., 2018</xref>). This suggests the existence of an east-west gradient of sperm whale densities, with higher abundances in the west. Indeed, from summer to autumn, the northern part of the western basin is a major concentration and feeding area for sperm whales (<xref ref-type="bibr" rid="B19">Drouot et&#xa0;al., 2004</xref>). Other studies indicate that the presence of sperm whales extends further east along the Hellenic Trench from south-west Kefallonia Island to central south Crete (<xref ref-type="bibr" rid="B23">Frantzis et&#xa0;al., 2014</xref>) and even to the Turkish coast as far as the western part of Antalya Bay (<xref ref-type="bibr" rid="B50">&#xd6;zt&#xfc;rk et&#xa0;al., 2010</xref>). From a single survey performed at the scale of the Mediterranean Sea, we were able to predict hotspots observed at more local scales.</p>
<p>The high presence of sperm whales in the southeast of the Gulf of Lions and in the Ligurian Sea could be explained by the presence of numerous canyons (<xref ref-type="bibr" rid="B29">Harris et&#xa0;al., 2014</xref>). Submarine canyons act as a connecting corridor between continental shelf areas and deep waters. As a result, they are widely recognised as cetacean concentration areas (<xref ref-type="bibr" rid="B64">Tepsich et&#xa0;al., 2014</xref>). The high densities of sperm whales in the Ligurian Sea can be explained by the presence of numerous canyons in this geographical area. A large-scale study revealed the presence of sperm whales along the Hellenic Trench and the west coast of Greece, and in the north-western Mediterranean Sea from the Gulf of Lion to the Ligurian Sea (<xref ref-type="bibr" rid="B36">Lewis et&#xa0;al., 2018</xref>), providing support for the model results.</p>
<p>In addition, sperm whales are often observed in the channel between Mallorca and Ibiza, an area characterised by the presence of three seamounts. The Balearic Archipelago is one of the few areas in the Mediterranean Sea where females, juveniles and single males are regularly observed (<xref ref-type="bibr" rid="B54">Pirotta et&#xa0;al., 2020</xref>). This is due to the critical role of the area as a breeding and feeding ground for the threatened Mediterranean population (<xref ref-type="bibr" rid="B58">Rendell and Frantzis, 2016</xref>).</p>
<p>Sperm whales were predicted to occur in the Ionian Sea (0.03 individuals.km<sup>-</sup>&#xb2;, mainly off the Italian and Greek coasts), which was consistent with the literature. For example, <xref ref-type="bibr" rid="B37">Lewis et&#xa0;al. (2007)</xref>; <xref ref-type="bibr" rid="B36">Lewis et&#xa0;al. (2018)</xref> found densities 0.24.10<sup>-3</sup> individuals.km<sup>-</sup>&#xb2; in the Ionian Sea and 0.12.10<sup>-3</sup> individuals.km<sup>-&#xb2;</sup> in the eastern Mediterranean Sea (similar results to <xref ref-type="bibr" rid="B23">Frantzis et&#xa0;al., 2014</xref>). Sperm whales appear to prefer the underwater relief of the sides of the Hellenic Trench at depths between 500 and 1,500 metres (<xref ref-type="bibr" rid="B24">Frantzis et&#xa0;al., 2003</xref>). However, densities were comparatively lower than in the western basin. There were two possible explanations for this: either there was less effort in the Ionian Sea, or, as suggested by <xref ref-type="bibr" rid="B37">Lewis et&#xa0;al. (2007)</xref>, density estimates in the Ionian Sea were underestimated because sperm whales tend to congregate in large groups along the Hellenic Trench, skewing the count results. Even if densities were underestimated, the Ionian Sea appeared to be important for the species as it may be a breeding ground according to <xref ref-type="bibr" rid="B19">Drouot et&#xa0;al. (2004)</xref>.</p>
<p>The eddy kinetic energy was one of the main variables that explained the distribution of sperm whales in our model. <xref ref-type="bibr" rid="B7">Biggs et&#xa0;al. (2000)</xref> showed that sperm whales are mainly distributed in cyclonic eddies, which are proxies for prey distribution. Cyclonic eddies are mesoscale structures that induce a locally increased concentration of plankton in response to the upwelling of nutrient-rich water. The abundance of plankton would induce the strong presence of prey for deep-diving cetaceans, through a trophic cascade mediated by vertically migrating micronekton. Sperm whales are large warm-blooded mammals not physiologically limited by water temperature or other hydrographic features; hence their spatial distribution would be primarily driven by the distribution of their prey, such as squid, supposedly concentrated in cyclonic oases (<xref ref-type="bibr" rid="B7">Biggs et&#xa0;al., 2000</xref>). The eddies present at a depth of 200 m can strongly modify the mixing and dispersion of organic matter and thus lead to a concentration of many prey species (<xref ref-type="bibr" rid="B53">Pingree and Le Cann, 1992</xref>; <xref ref-type="bibr" rid="B33">Koutsikopoulos and Le Cann, 1996</xref>).</p>
</sec>
<sec id="s4_4">
<label>4.4</label>
<title>Conservation implications</title>
<p>Statistic modelling allows the prediction of the number and distribution of animals, their physiological status, demographic rates and interactions between individuals and species (<xref ref-type="bibr" rid="B28">Grimm and Railsback, 2013</xref>). This information allows more effective conservation measures to be taken.</p>
<p>The Mediterranean sperm whale population is particularly exposed to various anthropogenic pressures, such as high-intensity noise activities, fishing activities, ship strikes, plastic ingestion, or exposure to chemical pollution (<xref ref-type="bibr" rid="B1">Aguilar et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B57">Reeves and Notarbartolo di Sciara, 2006</xref>; <xref ref-type="bibr" rid="B48">Notarbartolo-Di-Sciara, 2014</xref>). To mitigate the impact of these activities, management measures need to be implemented, based on knowledge of the distribution of sperm whales. Our study shows that in the western basin, sperm whales are found in the east of the Corsican coast and in the north of the Balearic Sea, but also in the Liguro-Proven&#xe7;al, Ionian, and Algerian basins where sperm whale densities reached 0.05 individuals.km<sup>-</sup>&#xb2;. A high density of sperm whales has been estimated in the Pelagos sanctuary, mainly in the east of Corsica but also in the south of France in the Ligurian Sea, but a large area where sperm whales were predicted is not protected by the sanctuary, mainly south-east of Gulf of Lion. Since this species has been considered endangered by the International Union for Conservation of Nature&#x2019;s Red List (IUCN; <xref ref-type="bibr" rid="B49">Notarbartolo di Sciara et&#xa0;al., 2012</xref>) for several years, it may be relevant to extend this marine protected area to provide better protection. High densities of sperm whales were also predicted in the Balearic Sea. This area became a marine protected area (MPA) in 2018, as it has been recognised as a corridor for cetaceans. In the model, about 0.06 individuals.km<sup>-</sup>&#xb2; were predicted in the north of the MPA, which is higher than the average density in the whole area (0.03 individuals.km<sup>-</sup>&#xb2;). It would be necessary to extend this MPA to the east to protect sperm whales more effectively.</p>
<p>Even though the MPAs do not fully encompass the distribution areas of sperm whales, three Important Marine Mammals areas (IMMAs) have been identified within these regions: the Northwest Mediterranean Sea IMMA, the Shelf of the Gulf of Lion IMMA, and the Western Ligurian Sea and Genoa Canyon IMMA. These protected areas represent a discrete portion of crucial marine mammal habitat and have the potential to be earmarked and administered for conservation purposes. The identification of IMMAs is intended to raise awareness among policy and decision makers regarding the urgent need to ensure the favourable conservation status of marine mammals in these specific regions through the implementation of appropriate management measures.</p>
<p>However, the model only predicts the summer distribution and not the annual distribution, which may be different in other seasons. It is therefore essential to conduct winter surveys and incorporate the results from these surveys into our results.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusion">
<label>5</label>
<title>Conclusion</title>
<p>We aimed to fill the knowledge gap on sperm whale distribution in the Mediterranean Sea by modelling their habitat using towed acoustic data and static and dynamic environmental variables integrated over the water column. We predicted that sperm whales were mainly distributed in summer off the coast of the north-western Mediterranean basin from the Balearic Islands to the Ligurian Sea and off the Algerian coast. They were present throughout the western Mediterranean Sea and in the northern Ionian Sea. Predicted densities in the eastern part of the Mediterranean Sea were low. This distribution was influenced by several factors, such as the bottom water temperature, eddy kinetic energy at depth, surface temperature gradients and chlorophyll-a concentration. Comparison with the literature showed that their distribution coincides with the presence of canyons. Existing marine protected areas, such as the Pelagos sanctuary, the Balearic MPA and the Strait of Bonifacio generally coincide with predicted hotspots of sperm whale density. These protection zones could be extended to provide optimal protection for the species.</p>
<p>The use of acoustic data compensated for the main difficulty in studying sperm whales, the unavailability of animals at the surface during visual observation and the subsequent lack of data. We encourage more systematic use of towed acoustic data to study the distribution of sperm whales. As the Mediterranean sperm whale sub-population is considered to be closed as a whole, a new survey at the Mediterranean scale in winter could reveal possible changes in the species distribution during the year and enable more appropriate conservation measures to be implemented.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s7" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>Ethical approval was not required for the study involving animals in accordance with the local legislation and institutional requirements because sperm whales were studied using acoustics only.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>The present work was designed by CL, AV and VR. OB provided the data. CL and AV conducted the analyses. CL wrote the manuscript. All revision were done by OB, VR and AV. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>We are grateful to Marine Research Conservation and the team aboard <italic>R/V Song of the Whale</italic> who participated in the ASI survey and collected all the data. We thank ACCOBAMS for having organised such a survey and for having provided, with MCR, the data used in the study. We finally thank the Direction G&#xe9;n&#xe9;rale de l&#x2019;Armement Techniques Navales (DGA TN), for funding CL and AV&#x2019;s research grant. We thank the two reviewers for their helpful comments on the manuscript.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2023.1229682/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2023.1229682/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.zip" id="SM1" mimetype="application/zip"/>
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