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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2023.1111416</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Evaluating historic and modern optical techniques for monitoring phytoplankton biomass in the Atlantic Ocean</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Brewin</surname>
<given-names>Robert J. W.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/403713"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pitarch</surname>
<given-names>Jaime</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2108163"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Dall&#x2019;Olmo</surname>
<given-names>Giorgio</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/427563"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>van der Woerd</surname>
<given-names>Hendrik J.</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/422313"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lin</surname>
<given-names>Junfang</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1077929"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sun</surname>
<given-names>Xuerong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1740938"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tilstone</surname>
<given-names>Gavin H.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/444975"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Centre for Geography and Environmental Science, Faculty of Environment, Science and Economy, University of Exeter</institution>, <addr-line>Penryn</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Plymouth Marine Laboratory</institution>, <addr-line>Plymouth</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Consiglio Nazionale delle Ricerche (CNR), Istituto di Scienze Marine (ISMAR)</institution>, <addr-line>Rome</addr-line>, <country>Italy</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>National Centre for Earth Observation, Plymouth Marine Laboratory</institution>, <addr-line>Plymouth</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Istituto Nazionale di Oceanografia e di Geofisica Sperimentale - OGS</institution>, <addr-line>Trieste</addr-line>, <country>Italy</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Department of Water and Climate Risk, Institute for Environmental Studies (IVM), Vrije Universiteit</institution>, <addr-line>Amsterdam</addr-line>, <country>Netherlands</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Vanda Brotas, University of Lisbon, Portugal</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Emmanuel Boss, University of Maine, United States; Shengqiang Wang, Nanjing University of Information Science and Technology, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Robert J. W. Brewin, <email xlink:href="mailto:r.brewin@exeter.ac.uk">r.brewin@exeter.ac.uk</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Ocean Observation, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>07</day>
<month>03</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1111416</elocation-id>
<history>
<date date-type="received">
<day>29</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>01</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Brewin, Pitarch, Dall&#x2019;Olmo, van der Woerd, Lin, Sun and Tilstone</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Brewin, Pitarch, Dall&#x2019;Olmo, van der Woerd, Lin, Sun and Tilstone</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Traditional measurements of the Secchi depth (<italic>z<sub>SD</sub>
</italic>) and Forel-Ule colour were collected alongside modern radiometric measurements of ocean clarity and colour, and <italic>in-situ</italic> measurements of chlorophyll-a concentration (Chl-a), on four Atlantic Meridional Transect (AMT) cruises. These data were used to evaluate historic and modern optical techniques for monitoring Chl-a, and to evaluate remote-sensing algorithms. Historic and modern optical measurements were broadly consistent with current understanding, with Secchi depth inversely related to Forel-Ule colour and to beam and diffuse attenuation, positively related to the ratio of blue to green remote-sensing reflectance and euphotic depth. The relationship between Secchi depth and Forel-Ule on AMT was found to be in closer agreement to historical relationships when using data of the Forel-Ule colour of infinite depth, rather than the Forel-Ule colour of the water above the Secchi disk at half <italic>z<sub>SD</sub>
</italic>. Over the range of 0.03-2.95 mg m<sup>-3</sup>, Chl-a was tightly correlated with these optical variables, with the ratio of blue to green remote-sensing reflectance explaining the highest amount of variance in Chl-a (89%), closely followed by the Secchi depth (85%) and Forel-Ule colour (71-81%, depending on the scale used). Existing algorithms that predict Chl-a from these variables were evaluated, and found to perform well, albeit with some systematic differences. Remote sensing algorithms of Secchi depth were in good agreement with <italic>in-situ</italic> data over the range of values collected (8.5 - 51.8&#xa0;m, <italic>r</italic>
<sup>2</sup>&gt;0.77, unbiased root mean square differences around 4.5&#xa0;m), but with a slight positive bias (2.0 - 5.4&#xa0;m). Remote sensing algorithms of Forel-Ule agreed well with Forel-Ule colour data of infinite water (<italic>r</italic>
<sup>2</sup>&gt;0.68, mean differences &lt;1). We investigated the impact of environmental conditions and found wind speed to impact the estimation of <italic>z<sub>SD</sub>
</italic>, and propose a path forward to include the effect of wind in current Secchi depth theory. We discuss the benefits and challenges of collecting measurements of the Secchi depth and Forel-Ule colour and propose future directions for research. Our dataset is made publicly available to support the research community working on the topic.</p>
</abstract>
<kwd-group>
<kwd>Forel-Ule colour scale</kwd>
<kwd>radiometry</kwd>
<kwd>chlorophyll-a</kwd>
<kwd>Atlantic Meridional Transect</kwd>
<kwd>phytoplankton</kwd>
<kwd>Secchi disk</kwd>
</kwd-group>
<contract-num rid="cn001">MR/V022792/1</contract-num>
<contract-num rid="cn002">DECIPHER, ESRIN/RFQ/3-14457/16/I-BG, 4000125730/18/NL/FF/gp</contract-num>
<contract-num rid="cn003">NE/R015953/1</contract-num>
<contract-sponsor id="cn001">UK Research and Innovation<named-content content-type="fundref-id">10.13039/100014013</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">European Space Agency<named-content content-type="fundref-id">10.13039/501100000844</named-content>
</contract-sponsor>
<contract-sponsor id="cn003">Natural Environment Research Council<named-content content-type="fundref-id">10.13039/501100000270</named-content>
</contract-sponsor>
<counts>
<fig-count count="8"/>
<table-count count="5"/>
<equation-count count="11"/>
<ref-count count="108"/>
<page-count count="20"/>
<word-count count="13538"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Phytoplankton play a central role in the Earth System, contributing to around half the world&#x2019;s organic carbon and oxygen production (<xref ref-type="bibr" rid="B56">Longhurst et&#xa0;al., 1995</xref>; <xref ref-type="bibr" rid="B33">Field et&#xa0;al., 1998</xref>). They act as a conduit for propagating solar energy into the marine ecosystem, supporting marine life and sustaining fisheries (<xref ref-type="bibr" rid="B22">Chassot et&#xa0;al., 2010</xref>). They are intimately linked to the biogeochemical cycles of many key elements and compounds in the ocean, helping to regulate the climate of our planet (<xref ref-type="bibr" rid="B31">Falkowski, 2012</xref>).</p>
<p>Climate change is considered one of the greatest threats to life on Earth (<xref ref-type="bibr" rid="B29">Dow and Downing, 2011</xref>). Sea surface temperatures are rising, sea-level increasing, parts of the ocean are becoming more stratified, oxygen minimum zones are expanding, and the oceans are becoming more acidic (<xref ref-type="bibr" rid="B42">IPCC, 2019</xref>), with consequences for marine life. While many studies have investigated the impact of climate variability and change on marine phytoplankton (e.g., <xref ref-type="bibr" rid="B5">Behrenfeld et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B60">Martinez et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B7">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B103">Wernand and van der Woerd, 2010a</xref>; <xref ref-type="bibr" rid="B3">Behrenfeld, 2011</xref>; <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B15">Brewin et&#xa0;al., 2012b</xref>; <xref ref-type="bibr" rid="B105">Wernand et&#xa0;al., 2013b</xref>; <xref ref-type="bibr" rid="B4">Behrenfeld, 2014</xref>; <xref ref-type="bibr" rid="B6">Boyce et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B30">Dutkiewicz et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B38">Henson et&#xa0;al., 2021</xref>) results are not always in agreement, with differences thought to be related to variations in the methods used for data collection, differences in data processing, and dealing with spatial and temporal biases in data collection (<xref ref-type="bibr" rid="B36">Gregg and Conkright, 2002</xref>; <xref ref-type="bibr" rid="B2">Antoine et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B7">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B57">Mackas, 2011</xref>; <xref ref-type="bibr" rid="B61">McQuatters-Gollop et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B85">Rykaczewski and Dunne, 2011</xref>; <xref ref-type="bibr" rid="B105">Wernand et&#xa0;al., 2013b</xref>; <xref ref-type="bibr" rid="B79">Raitsos et&#xa0;al., 2014</xref>).</p>
<p>Phytoplankton may respond to climate change in different ways. For example, through changes in community composition, phenology, metabolic rates, geographical distribution, and vertical structure (<xref ref-type="bibr" rid="B87">Sathyendranath et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B11">Brewin et&#xa0;al., 2022</xref>) to name a few. Arguably one of the most important metrics to monitor is phytoplankton biomass, considering this metric is explicitly linked to many of these responses. Though not a perfect measure of phytoplankton biomass, since it can change independently through processes like photo-acclimation, the total chlorophyll-a concentration (Chl-a) is one of the most commonly-used metrics of phytoplankton biomass, owing to the fact it is present in all of phytoplankton (in one form or another), is relatively easy to measure (both <italic>in situ</italic> (directly and visually) and remotely (e.g., satellite)) at a sufficient accuracy and precision, with data being available over long periods needed to monitor change. Consequently, the Global Climate Observing System programme (GCOS) consider Chl-a to be an Essential Climate Variable (<xref ref-type="bibr" rid="B35">GCOS, 2011</xref>).</p>
<p>A key requirement for monitoring the response of phytoplankton biomass to climate change is to have a global dataset of a sufficient length to separate anthropogenic climate change from natural climate variability (e.g., &gt;40 years in length; <xref ref-type="bibr" rid="B39">Henson et&#xa0;al., 2010</xref>). Though it is clear that satellites will become the main source of data used in the future for monitoring the response of phytoplankton to climate change (e.g., <xref ref-type="bibr" rid="B90">Siegel and Franz, 2010</xref>; <xref ref-type="bibr" rid="B86">Sathyendranath et&#xa0;al., 2019</xref>), the continuous ocean-colour data record is not yet at a sufficient length to do so. Ocean robotic platforms are increasing in number (<xref ref-type="bibr" rid="B21">Chai et&#xa0;al., 2020</xref>) and can measure deeper into the water column than the satellites, but have only been operating widely for a few decades. Time-series stations are critical (<xref ref-type="bibr" rid="B37">Henson, 2014</xref>), and in some cases have data available for &gt;40 years (e.g., Bermuda Atlantic Time-series Study (BATS), Hawaii Ocean Time-series (HOT), Ston&#x10d;ica), but are only available at discrete locations. At present, our only means to understand the global response of phytoplankton to climate change, at appropriate time scales (e.g., centennial), is to bridge modern measurements of Chl-a with historic proxies estimated by visual means, such as those collected using a Secchi disk, Forel-Ule colour scale, or the Continuous Plankton Recorder&#x2019;s (CPR) phytoplankton colour index (<xref ref-type="bibr" rid="B54">Lewis et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B32">Falkowski and Wilson, 1992</xref>; <xref ref-type="bibr" rid="B7">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B105">Wernand et&#xa0;al., 2013b</xref>; <xref ref-type="bibr" rid="B79">Raitsos et&#xa0;al., 2014</xref>).</p>
<p>Among the oldest instruments used in optical oceanography are the Secchi disk (<xref ref-type="bibr" rid="B89">Secchi, 1864</xref>) and Forel-Ule colour scale (<xref ref-type="bibr" rid="B34">Forel, 1890</xref>; <xref ref-type="bibr" rid="B95">Ule, 1892</xref>). A Secchi disk is a white (typically) disk one lowers into the water and the depth at which it disappears/reappears from sight is proportional to water clarity or transparency (<xref ref-type="bibr" rid="B94">Tyler, 1968</xref>; <xref ref-type="bibr" rid="B78">Preisendorfer, 1986</xref>; <xref ref-type="bibr" rid="B100">Wernand, 2010</xref>; <xref ref-type="bibr" rid="B101">Wernand and Gieskes, 2012</xref>; <xref ref-type="bibr" rid="B72">Pitarch, 2020</xref>). The Forel-Ule colour scale is a visual scale of 21 colours, ranging from blue to green to yellow to brown, that can be used alongside the Secchi disk with the observer typically recording the colour of a submerged Secchi disk at around roughly half the Secchi depth (<xref ref-type="bibr" rid="B101">Wernand and Gieskes, 2012</xref>). This visual index of colour can reflect information on the composition of optically active constituents in the water, such as sediment, phytoplankton and yellow substances (<xref ref-type="bibr" rid="B104">Wernand and van der Woerd, 2010b</xref>; <xref ref-type="bibr" rid="B98">Wang et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B106">Ye and Sun, 2022</xref>). In open-ocean case-1 waters (around 70% of the ocean surface; <xref ref-type="bibr" rid="B41">Hu et&#xa0;al., 2012</xref>), where optically active water constituents covary in a predictable manner with phytoplankton (<xref ref-type="bibr" rid="B66">Morel and Prieur, 1977</xref>), these visual indices can be a powerful predictor of Chl-a concentration (<xref ref-type="bibr" rid="B7">Boyce et&#xa0;al., 2010</xref>). In case-2 waters, where optically active water constituents do not covary in a predictable manner with phytoplankton (<xref ref-type="bibr" rid="B66">Morel and Prieur, 1977</xref>), relating Secchi depth and Forel-Ule colour readings to a Chl-a concentration can be more challenging.</p>
<p>In open-ocean case-1 waters, converting Secchi depth and Forel-Ule readings to a Chl-a concentration typically requires establishing statistical, empirical or analytical relationships (<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B51">Lee et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B50">Lee et&#xa0;al., 2018c</xref>). When searching for long-term trends, it is essential to quantify the accuracy of these conversions and their uncertainties (<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B6">Boyce et&#xa0;al., 2014</xref>), to minimise systematic biases between methods (<xref ref-type="bibr" rid="B85">Rykaczewski and Dunne, 2011</xref>), and to bridge these historic datasets with modern radiometric measurements used to derive Chl-a, considering satellite radiometry will soon become the main source of data for monitoring the impact of climate change on phytoplankton (<xref ref-type="bibr" rid="B90">Siegel and Franz, 2010</xref>; <xref ref-type="bibr" rid="B102">Wernand et&#xa0;al., 2013a</xref>; <xref ref-type="bibr" rid="B49">Lee et&#xa0;al., 2018b</xref>; <xref ref-type="bibr" rid="B75">Pitarch et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B86">Sathyendranath et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B73">Pitarch et&#xa0;al., 2021</xref>). To achieve these requirements, a comprehensive, consistent, co-located <italic>in-situ</italic> dataset of Secchi depth, Forel-Ule colour, Chl-a concentration and radiometric measurements is required, that covers the range of conditions representative of open-ocean waters. At present, the distribution of <italic>in-situ</italic> data available is biased toward coastal and eutrophic waters, with few measurements collected in the less accessible open-ocean (<xref ref-type="bibr" rid="B12">Brewin et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B45">Lee et&#xa0;al., 2018a</xref>)</p>
<p>The Atlantic Meridional Transect (AMT) is an open-ocean research programme that collects oceanographic data through the centre of the Atlantic Ocean, across a transect of &gt;12,000 km, covering shelf seas and upwelling systems, and the mid-ocean oligotrophic gyres (<xref ref-type="bibr" rid="B1">Aiken et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B83">Robinson et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B81">Rees et&#xa0;al., 2017</xref>). The programme has been operating since 1995, with 29 cruises completed to date. Additional details of the AMT programme can be found on the AMT website (<uri xlink:href="https://amt-uk.org">https://amt-uk.org</uri>). Among the current objectives of AMT, there is a requirement to construct a multi-decadal, multidisciplinary ocean time-series, and to provide essential sea-truth validation for current and next-generation satellite missions (<xref ref-type="bibr" rid="B82">Rees et&#xa0;al., 2015</xref>). In-line with these two objectives, and with a view towards using AMT data to help toward constructing time-series data of phytoplankton at a length longer than that collected during the programme, we collected a dataset of concurrent and co-located measurements of Secchi depth, Forel-Ule colour, Chl-a, hyperspectral remote-sensing reflectance (<italic>R<sub>rs</sub>
</italic>), diffuse attenuation (<italic>K<sub>d</sub>
</italic>) and beam attenuation (<italic>c</italic>), on four AMT cruises (AMTs 23, 25, 26 and 28, a total of 127 stations). In this paper, we use this dataset to evaluate techniques that convert Secchi depth, Forel-Ule colour and <italic>R<sub>rs</sub>
</italic> data to measurements of Chl-a, that have been used for constructing centennial scale time-series data on phytoplankton biomass, and to evaluate satellite algorithms designed to monitor these variables.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Statistical tests</title>
<p>To compare variables, we used the Pearson linear correlation coefficient (<italic>r</italic>), the squared Pearson linear correlation coefficient (<italic>r</italic>
<sup>2</sup>), the centre-patterned (or unbiased) root mean square difference (&#x394;) and the bias (<italic>&#x3b4;</italic>). The latter two statistics representing an index of precision and accuracy of a model, respectively. The root mean square difference (<inline-formula>
<mml:math display="inline" id="im1">
<mml:mtext>&#x3a8;</mml:mtext>
</mml:math>
</inline-formula>), which contains information on both accuracy and precision, can be reconstructed from &#x394; and <italic>&#x3b4;</italic>, according to, <inline-formula>
<mml:math display="inline" id="im2">
<mml:mrow>
<mml:mtext>&#x3a8;</mml:mtext>
<mml:mo>=</mml:mo>
<mml:msqrt>
<mml:mrow>
<mml:msup>
<mml:mtext>&#x394;</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>+</mml:mo>
<mml:msup>
<mml:mi mathvariant="italic">&#x3b4;</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:msqrt>
</mml:mrow>
</mml:math>
</inline-formula>. The value of &#x394; and <italic>&#x3b4;</italic> were computed according to</p>
<disp-formula>
<label>(1)</label>
<mml:math display="block" id="M1">
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<mml:mtext>&#x394;</mml:mtext>
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<mml:msup>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mfrac>
<mml:mn>1</mml:mn>
<mml:mi>N</mml:mi>
</mml:mfrac>
<mml:munderover>
<mml:mo>&#x2211;</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mi>N</mml:mi>
</mml:munderover>
<mml:msup>
<mml:mrow>
<mml:mo>{</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">[</mml:mo>
<mml:mrow>
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<mml:mi>X</mml:mi>
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<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
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<disp-formula>
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<p>where <italic>X</italic> is the variable and <italic>N</italic> is the number of samples. The subscripts 1 and 2 represent different estimates of the same variable, with 1 typically representing the estimated variable and 2 the measured variable. In many cases, statistical tests were performed in log<sub>10</sub> space, depending on whether the distribution of the data was closer to log-normal. Linear models relating two variables (e.g., Secchi depth and Chl-a) were fitted (often after log<sub>10</sub>-transformation of one or both variables, depending on their distribution) using a outlier-resistant fitting function (IDL function ROBUST_LINEFIT.pro) and non-linear models were fitted using least-square minimisation (Levenberg-Marquardt, IDL function MPFITFUN.pro (<xref ref-type="bibr" rid="B64">Mor&#xe9;, 1978</xref>; <xref ref-type="bibr" rid="B59">Markwardt, 2008</xref>), MatLab function fit.m).</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>AMT cruises</title>
<p>Data used in this study were collected at 127 stations on four AMT cruises (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>) that took place onboard the RRS <italic>James Clark Ross</italic> (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>), each one departing the UK and arriving in Port Stanley, Falkland Islands, including: AMT cruise 23 (AMT23) that took place between the 7th October and 8th November 2013 (25 stations sampled); AMT cruise 25 (AMT25) that took place between the 11th September and 4th November 2015 (35 stations sampled); AMT cruise 26 (AMT26) that took place between the 20th September and 4th November 2016 (37 stations sampled); and AMT cruise 28 (AMT28) that took place between the 23rd September and 30th October 2018 (30 stations sampled). Stations were sampled primarily around local noon, with a few stations sampled on AMT26 around mid-morning, so as to align with the passing of ESA&#x2019;s Sentinel 3A satellite.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Locations of the 127 AMT stations where Secchi depth, Forel-Ule colour (using the LaMotte scale, for the colour of the disk at half the Secchi depth converted to infinite colour using the method of <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref>) and Chl-a data were collected, on the four AMT cruises. The transects are overlain onto satellite estimates of Secchi depth (<xref ref-type="bibr" rid="B73">Pitarch et&#xa0;al., 2021</xref>), Forel-Ule colour (<xref ref-type="bibr" rid="B73">Pitarch et&#xa0;al., 2021</xref>), and Chl-a concentration (<xref ref-type="bibr" rid="B86">Sathyendranath et al., 2019</xref>), for the month of October (during which the AMT cruises took place), for each of the respective years that the cruises took place (AMT23 October 2013, AMT25 October 2015, AMT26 October 2016, AMT28 October 2018). Satellite data are from version 4.2 of the Ocean Colour Climate Change Initiative (<xref ref-type="bibr" rid="B86">Sathyendranath et&#xa0;al., 2019</xref>). The stations are coloured using the <italic>in-situ</italic> data, using the same colour scale as the satellite data, to illustrate how the two independent estimates of Secchi depth, Forel-Ule colour and Chl-a compare visually.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Instrumentation used on-board the RRS <italic>James Clark Ross</italic>. <bold>(A)</bold> Secchi disk attached to the optics rig and deployed from the aft-deck winch, with the Forel-Ule colour scales, the LaMotte scale used on AMT23-28, and that described in <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> and used on AMT25-28. <bold>(B)</bold> Conductivity, Temperature and Depth (CTD) Niskin Rossette used to collect water samples of Chl-a, measure PAR and beam attenuation, deployed on the CTD winch located towards the centre of the ship. <bold>(C)</bold> Satlantic Hyperspectral (HyperSAS) radiometer set-up (photos from AMT23), with the two radiance sensors positioned on the very bow of the ship (and tilt and heading sensor is shown vertically), and the downwelling irradiance sensor positioned vertically on the met-platform on the ship&#x2019;s foremast (bottom figure showing it being attached on AMT23). <bold>(D)</bold> Photos of water colour collected on AMT23, in (1) the centre of the South Atlantic gyre, (2) the edge of the North Atlantic gyre, and (3) in the South Subtropical Convergence Zone, illustrating visual transitions from blue to blue-green waters.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g002.tif"/>
</fig>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Datasets collected</title>
<p>
<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref> lists all datasets collected and used in the study, providing acronyms, units and number of stations sampled.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>A summary of the datasets collected and used in the study.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Variable</th>
<th valign="top" align="left">Acronym</th>
<th valign="top" align="left">Units</th>
<th valign="top" align="left">Section description</th>
<th valign="top" align="left">
<italic>N</italic> stations sampled</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Chlorophyll-a concentration</td>
<td valign="top" align="left">Chl-a</td>
<td valign="top" align="left">mg m<sup>&#x2212;3</sup>
</td>
<td valign="top" align="left">2.3.1</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Secchi depth</td>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="left">m</td>
<td valign="top" align="left">2.3.2</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Visual cloud index</td>
<td valign="top" align="left">VCI</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.2</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Visual glint index</td>
<td valign="top" align="left">VGI</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.2</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Forel-Ule colour (LaMotte, 1/2 <italic>z<sub>SD</sub>
</italic>)</td>
<td valign="top" align="left">
<italic>F<sub>D,L</sub>
</italic>
</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.3</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Forel-Ule colour (N14<sup>&#x2217;</sup>, 1/2 <italic>z<sub>SD</sub>
</italic>)</td>
<td valign="top" align="left">
<italic>F<sub>D,N</sub>
</italic>
</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.3</td>
<td valign="top" align="left">102</td>
</tr>
<tr>
<td valign="top" align="left">Forel-Ule colour (LaMotte, infinite)</td>
<td valign="top" align="left">
<italic>F<sub>I,L</sub>
</italic>
</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.3</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Forel-Ule colour (N14<sup>&#x2217;</sup>, infinite)</td>
<td valign="top" align="left">
<italic>F<sub>I,N</sub>
</italic>
</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.3</td>
<td valign="top" align="left">102</td>
</tr>
<tr>
<td valign="top" align="left">Forel-Ule colour (App, infinite)</td>
<td valign="top" align="left">
<italic>F<sub>I,A</sub>
</italic>
</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.3</td>
<td valign="top" align="left">37</td>
</tr>
<tr>
<td valign="top" align="left">Diffuse attenuation for PAR (10%)</td>
<td valign="top" align="left">
<italic>K<sub>d</sub>
</italic>
</td>
<td valign="top" align="left">m<sup>-1</sup>
</td>
<td valign="top" align="left">2.3.4</td>
<td valign="top" align="left">106</td>
</tr>
<tr>
<td valign="top" align="left">Euphotic depth</td>
<td valign="top" align="left">
<italic>z<sub>p</sub>
</italic>
</td>
<td valign="top" align="left">m</td>
<td valign="top" align="left">2.3.4</td>
<td valign="top" align="left">118</td>
</tr>
<tr>
<td valign="top" align="left">Beam attenuation (650 nm)</td>
<td valign="top" align="left">
<italic>c</italic>
</td>
<td valign="top" align="left">m<sup>-1</sup>
</td>
<td valign="top" align="left">2.3.4</td>
<td valign="top" align="left">119</td>
</tr>
<tr>
<td valign="top" align="left">Remote sensing reflectance</td>
<td valign="top" align="left">
<italic>R<sub>rs</sub>
</italic>
</td>
<td valign="top" align="left">sr<sup>&#x2212;1</sup>
</td>
<td valign="top" align="left">2.3.5</td>
<td valign="top" align="left">101</td>
</tr>
<tr>
<td valign="top" align="left">Maximum blue-green <italic>R<sub>rs</sub>
</italic> ratio</td>
<td valign="top" align="left">
<inline-formula>
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<mml:mrow>
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<mml:mrow>
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<mml:mi>B</mml:mi>
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</mml:mrow>
<mml:mrow>
<mml:msub>
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</inline-formula>
</td>
<td valign="top" align="left">dimensionless</td>
<td valign="top" align="left">2.3.5</td>
<td valign="top" align="left">101</td>
</tr>
<tr>
<td valign="top" align="left">HyperSAS cloud index</td>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im4">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
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</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>E</mml:mi>
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</inline-formula>
</td>
<td valign="top" align="left">sr<sup>&#x2212;1</sup>
</td>
<td valign="top" align="left">2.3.5</td>
<td valign="top" align="left">125</td>
</tr>
<tr>
<td valign="top" align="left">Wind speed</td>
<td valign="top" align="left">
<italic>w<sub>s</sub>
</italic>
</td>
<td valign="top" align="left">m s<sup>&#x2212;1</sup>
</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">125</td>
</tr>
<tr>
<td valign="top" align="left">Sea surface temperature</td>
<td valign="top" align="left">SST</td>
<td valign="top" align="left">degrees C</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Sea surface salinity</td>
<td valign="top" align="left">SSS</td>
<td valign="top" align="left">PSU</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Solar zenith angle</td>
<td valign="top" align="left">
<italic>&#x3b8;</italic>
</td>
<td valign="top" align="left">degrees</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">Pitch standard deviation</td>
<td valign="top" align="left">PSD</td>
<td valign="top" align="left">degrees</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">125</td>
</tr>
<tr>
<td valign="top" align="left">Roll standard deviation</td>
<td valign="top" align="left">RSD</td>
<td valign="top" align="left">degrees</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">125</td>
</tr>
<tr>
<td valign="top" align="left">Photosynthetically Available Radiation</td>
<td valign="top" align="left">PAR</td>
<td valign="top" align="left">
<italic>&#xb5;</italic>mol m<sup>&#x2212;2</sup> s <sup>&#x2212;1</sup>
</td>
<td valign="top" align="left">2.3.6</td>
<td valign="top" align="left">124</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>*</sup> N14 refers to the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> Forel-Ule colour scale.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<sec id="s2_3_1">
<label>2.3.1</label>
<title>Chlorophyll-a concentration</title>
<p>Surface seawater samples (2-5&#xa0;m depth) were collected from the CTD casts (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>, 117 stations) and from the ship underway system (six stations, where CTD casts were unavailable). Seawater was sampled into 9.5 L polypropylene carboys covered in black plastic to protect from light. Seawater samples were well mixed to avoid issues with sedimentation. Between 1-4 L samples (depending on phytoplankton biomass, e.g. 1 L in productive waters and 4 L in oligotrophic waters) were measured using the rinsed measuring cylinders, and then decanted into rinsed polypropylene bottles with siphon tubes and inverted into a six port vacuum filtration rig. Using forceps, Whatman glass fibre filters (pore size of 0.7 <italic>&#x3bc;</italic>m) were placed on the filter rig with the smoother side facing down. Filter papers were covered over sintered glass circles such that there were no gaps and water could only pass through the filters. Samples were filtered using a low-medium vacuum setting on the vacuum pump. When the last of the water passed through the filter paper, taps on the vacuum pump were closed and the sample filters were folded into 2 mL cryovials and either flash frozen in liquid nitrogen and transferred to the &#x2212;80&#xb0;C freezer (on AMT23, AMT26 and AMT28), or transferred directly to the &#x2212;80&#xb0;C freezer, for cases where liquid nitrogen was unavailable (AMT25).</p>
<p>Following each AMT campaign, High Performance Liquid Chromatography (HPLC) was used to determine total Chl-a (estimated from the sum of monovinyl chlorophyll-a, divinyl chlorophyll-a, and chlorophyllide-a). Details of the HPLC protocols and pigment extraction methods used on AMT23 and AMT25 are provided in <xref ref-type="bibr" rid="B18">Brotas et&#xa0;al. (2022)</xref>, and those used on AMT26 and AMT28 are provided in <xref ref-type="bibr" rid="B93">Tilstone et&#xa0;al. (2021)</xref>. At stations where neither CTD casts or underway samples were collected (four stations, one on AMT25, three on AMT26), Chl-a was estimated from underway spectrophotometric measurements of particulate absorption collected at the stations using the line-height method as described in <xref ref-type="bibr" rid="B24">Dall&#x2019;Olmo et&#xa0;al. (2012)</xref>, a technique proven to provide very accurate estimates of Chl-a on AMT cruises (see <xref ref-type="bibr" rid="B24">Dall&#x2019;Olmo et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B12">Brewin et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B80">Rasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B93">Tilstone et&#xa0;al., 2021</xref>).</p>
</sec>
<sec id="s2_3_2">
<label>2.3.2</label>
<title>Secchi depth</title>
<p>For all four AMT cruises, a 30&#xa0;cm Secchi disk was attached to the profiling rig that was deployed from the aft-deck winch of the RRS <italic>James Clark Ross</italic> (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). Attaching the disk to the profiling rig minimised drift in all but extreme circumstances (e.g. very strong currents at the equator). The profiling rig was lowered from the surface down to around 250&#xa0;m depth, and brought up from this depth to the surface, at a constant speed (that sometimes varied between down and up casts). In all but a few cases (where only one up and down cast was conducted), the profiling rig was deployed twice (two casts), and consequently, the depth of the disappearance and reappearance of the disk were measured twice (four measurements of Secchi depth at each station).</p>
<p>Over the four AMT cruises, the Secchi depth was measured using three different techniques. When available (principally on AMT26 and 28), a Wire Length Measurement sensor (WLM) was attached to the aft-deck winch that calculated the length of wire released by the winch. This was zeroed when the disk was at the surface, and when the disk disappeared and reappeared the observer shouted out to the winch operator who shouted back the depth, which was logged. For cases where the WLM was not available (principally on AMT23 and AMT25), the Secchi depth was measured using two alternative techniques. Firstly, and considering the profiling rig was lowered and retrieved at a set speed, the observer logged the time when the disk was at the surface, when it disappeared (or reappeared), and when the 50&#xa0;m, 100&#xa0;m and 150&#xa0;m tags on the wire were at the surface, and did a linear interpolation to get the Secchi depth. Secondly, a watch was calibrated to the same time on a pressure sensor (CTD) on the profiling rig, and the Secchi depths were extracted by matching the time of disappearance and reappearance, with the depth from pressure sensor, correcting for distance between pressure sensor and disk. Both methods were found to agree well with a mean difference of 0.48 m (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>
<bold>(A)</bold>Comparison between two methods for measuring the Secchi depth on AMT23. Method 1 involved linear interpolation, logging the time when the disk was at the surface, when it disappeared (or reappeared), and when the 50&#xa0;m, 100&#xa0;m and 150&#xa0;m tags on wire were at the surface. Method 2 involved using a watch which was calibrated to the same time of a pressure sensor (CTD) on the profiling rig, and logging the time of disappearance and reappearance (see Section 4.3.2 for further details). Note that data are shown for all the reappearances and disappearances logged (hence there are more samples (<italic>N</italic>) than stations on AMT23). <bold>(B)</bold> Comparison between the Forel-Ule colour (<italic>F)</italic> using the method of <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> (<italic>F</italic>
<sub>D,N</sub>) and the LaMotte method (<italic>F</italic>
<sub>D,L</sub>), for the colour of the disk at half the Secchi depth on AMT25, AMT26 and AMT28. <bold>(C)</bold> AMT26 latitudinal transects of <italic>F</italic> using the method of <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref>, for the colour of the disk at half the Secchi depth (<italic>F<sub>D,N</sub>
</italic>), for the colour of the disk at half the Secchi depth but converted to infinite colour using the method of <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref> (<italic>F</italic>
<sub>I,N</sub>), the Forel-Ule colour of infinite water measured using the EyeOnWater-Colour mobile phone app <xref ref-type="bibr" rid="B19">(Busch et al., 2016)</xref> (<italic>F</italic>
<sub>I,A</sub>), and estimated <italic>F</italic> from <italic>R<sub>rs</sub>
</italic> using the methods of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> (V15N14). <bold>(D)</bold> Remote sensing reflectance data used in the study (101 stations) plotted as a function of wavelength and coloured according to the Chl-a concentration at the station. <italic>r</italic>
<sup>2</sup> is the squared Pearson correlation coefficient, <italic>&#x3b4;</italic> the mean difference (bias) and <italic>N</italic> the number of samples.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g003.tif"/>
</fig>
<p>At each station, all Secchi depth data collected were averaged (denoted <italic>z<sub>SD</sub>
</italic>) and a standard deviation computed as a proxy of the uncertainty in the Secchi depth (average was 2.7&#xa0;m, with an average percent deviation (standard deviation divided by <italic>z<sub>SD</sub>
</italic>) of 10%). Where possible, different participants (scientists and crew) contributed to data collection (see acknowledgements to this paper) so as to include variability between individuals. When measuring the Secchi depth, and for clear sky conditions, the measurement was often conducted on the sunny side of the ship, as there was a preference to deploy the profiling rig on the sunny side (for the Photosynthetically Available Radiation (PAR) sensor on the main CTD). At low latitudes in the tropics (especially near the equator), the sun zenith angle was very low at the noon stations (sun high in the sky), making it difficult to avoid the sun (i.e. both sides of the ship were sunny). The observer often took notes of the conditions, that were subsequently used to indicate if the sky was fully overcast or clear/partial cloud (when reported, denoted VCI), and when sun glint was reported as a problem when collecting data (denoted VGI).</p>
</sec>
<sec id="s2_3_3">
<label>2.3.3</label>
<title>Forel-Ule colour</title>
<p>Two different Forel-Ule (<italic>F</italic>) scales were used in the study (shown in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). A LaMotte scale was used on all four AMT cruises, which consists of a simple printed scale encased in perspex, showing <italic>F</italic> colours 1, 3, 4, 5, 6, 7, 8, and 9 (missing 2). Additionally, on AMT25, AMT26 and AMT28, the Forel-Ule scale presented in <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref>, and kindly provided by Marcel Wernand, was also used (with all <italic>F</italic> numbers). At the majority of stations, four <italic>F</italic> measurements were collected, for the two up and down casts (at stations where only one cast was made, two measurements were collected). The measurements were collected by comparing the colour of the disk at roughly half the Secchi depth (approximated based on <italic>a priori</italic> knowledge). As with the Secchi depth, many participants (scientists and crew) contributed to Forel-Ule data collection (see acknowledgements to this paper), many at the same time using the different scales, so as to include variability between individuals. At each station, and separately for each scale, all measurements collected were averaged and a standard deviation computed as a proxy of the uncertainty. Comparisons between the colour of the disk using the LaMotte scale (<italic>F<sub>D,L</sub>
</italic>) and the colour of the disk using the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale (<italic>F<sub>D,N</sub>
</italic>) are shown in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>, and are in reasonable agreement <italic>(r<sup>2</sup>
</italic> = 0.75), but with the LaMotte scale generally higher than the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale (<italic>&#x3b4;</italic> = 0.64). These measurements were also converted from the colour of the water above the disk at half the Secchi depth, to the colour of infinite water (<italic>F<sub>I,L</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic>, where <italic>I</italic> refers to the conversion to infinite colour), using the algorithm of <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref> and a lower boundary of <italic>F</italic> = 0 (<xref ref-type="bibr" rid="B75">Pitarch et&#xa0;al., 2019</xref>). This method consists of converting <italic>F</italic> to hue angle, applying a polynomial relationship to convert the hue angle of the water above the disk at half the Secchi depth to the hue angle of infinite water, then converting back to <italic>F</italic> (<xref ref-type="bibr" rid="B71">Pitarch, 2017</xref>). For stations on AMT26, the <italic>F</italic> colour was also measured using the EyeOnWater-Colour mobile phone app (<uri xlink:href="http://www.eyeonwater.org">www.eyeonwater.org</uri>; <xref ref-type="bibr" rid="B68">Novoa et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B19">Busch et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B58">Malthus et&#xa0;al., 2020</xref>), for infinite water (not using the disk, denoted <italic>F<sub>I,A</sub>
</italic>), which gave a single number for each station. The measurement was collected in a direction away from sun glint (typically between 100-170 degrees azimuth). Comparisons between <italic>F<sub>I,A</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic> on AMT26 are shown in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>. The <italic>F<sub>I,N</sub>
</italic> data are in good agreement with <italic>F<sub>I,A</sub>
</italic>, with a mean difference of &#x2212;0.3 compared with &#x2212;1.4 for the unconverted data (<italic>F<sub>D,N</sub>
</italic>), supporting the conversion method.</p>
</sec>
<sec id="s2_3_4">
<label>2.3.4</label>
<title>Diffuse and beam attenuation</title>
<p>On all four AMT cruises, a WET Labs C-Star, designed to measure beam attenuation (<italic>c</italic>) at 650 nm, was attached to the base of the main CTD, and a Biospherical QCD-905L sensor, designed to measure downwelling PAR, was attached to the top of the CTD (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). Both sensors provided vertical profiles of <italic>c</italic> and PAR, for stations where the main CTD was deployed. Data for downcasts were extracted from the CTD logger, which was preferred over upcast data when bottles were fired (CTD stopped to shut the Niskin bottles at discrete depths on the upcast).</p>
<p>Data for <italic>c</italic> were processed as follows: firstly, a cruise specific minimum value of <italic>c</italic> derived from all profiles used for each cruise, were subtracted from the profile, this minimum value (which varied among cruises) represented that of pure water beam attenuation [<italic>c<sub>w</sub>
</italic>(650)] and any residual biases in the calibration; secondly, values of <italic>c<sub>w</sub>
</italic>(650) (<italic>c<sub>w</sub>=b</italic>
<sub>w</sub>+<italic>a<sub>w</sub>
</italic>, where <italic>a<sub>w</sub>
</italic> is the absorption coefficient of pure water, taken from <xref ref-type="bibr" rid="B77">Pope and Fry (1997)</xref>, and <italic>b<sub>w</sub>
</italic> the scattering coefficient of pure water, which was computed as a function of sea surface temperature (SST) and salinity (SSS) at each station following <xref ref-type="bibr" rid="B107">Zhang and Hu (2009)</xref> and <xref ref-type="bibr" rid="B108">Zhang et&#xa0;al. (2009)</xref>, see Section 4.3.6 for details on how SST and SSS were collected) were added back to the profile, which resulted in calibrated profiles of <italic>c</italic>. Data were extracted from between the surface and Secchi depth, and median values of <italic>c</italic> and standard deviations (range of distribution that lies within the percentiles of one standard deviation) were computed. Data for <italic>c</italic> were only retained if the coefficient of variation for the samples in the Secchi depth layer was less than 0.04. Considering this method assumes <italic>c<sub>p</sub>
</italic>(650) and <italic>c<sub>y</sub>
</italic>(650) are close to zero at depth (<italic>y</italic> representing coloured dissolved organic matter), which may not always hold, it is possible the <italic>c</italic> values are slightly biased low.</p>
<p>Vertical profiles of PAR were used to compute the diffuse attenuation coefficient of PAR (<italic>K<sub>d</sub>
</italic>). Two values of <italic>K<sub>d</sub>
</italic> were derived for each profile, <italic>K<sub>d</sub>
</italic>(10%) in the layer between the surface and the 10% light level (defined as 2.3/<italic>K<sub>d</sub>
</italic>), and <italic>K<sub>d</sub>
</italic>(1%) in the layer between the surface and the 1% light level (defined as 4.6/<italic>K<sub>d</sub>
</italic>). The latter was used to compute the euphotic depth (<italic>z<sub>p</sub>
</italic>=4.6/<italic>K<sub>d</sub>
</italic>(1%)), and the former was used to represent <italic>K<sub>d</sub>
</italic> (i.e., <italic>K<sub>d</sub>
</italic> = <italic>K<sub>d</sub>
</italic>(10%)) in the Secchi depth layer (<xref ref-type="bibr" rid="B50">Lee et&#xa0;al., 2018c</xref>). Both were computed as follows: firstly, the 10% and 1% light depth levels were approximated from the surface Chl-a concentration using an AMT-calibrated model (<xref ref-type="bibr" rid="B17">Brewin et&#xa0;al., 2017</xref>); PAR data above these depth levels were extracted and initial values of <italic>K<sub>d</sub>
</italic> for the two depth levels were derived by fitting a Beer-Lambert law (acknowledging this assumes inherent optical properties to be constant in the layer) to the PAR and depth data (using IDL function ROBUST_LINEFIT.pro, an outlier-resistant fitting function); next, these initial values were used to recompute the 10% land 1% light depth levels, and the data were re-fitted to PAR and depth data above these light depth levels, to derive final values for <italic>K<sub>d</sub>
</italic> and <italic>z<sub>p</sub>
</italic>. Standard deviations for <italic>K<sub>d</sub>
</italic> were also extracted from the fits. To remove dubious data (from unusual profiles), <italic>K<sub>d</sub>
</italic> and <italic>z<sub>p</sub>
</italic> for a given profile were only retained if the <italic>r<sup>2</sup>
</italic> between log(PAR) and depth, above the respective light level, was greater than 0.85.</p>
</sec>
<sec id="s2_3_5">
<label>2.3.5</label>
<title>Remote sensing reflectance data and ocean colour models</title>
<p>The same Satlantic/Seabird Hyperspectral (HyperSAS) radiometer package was installed on the RRS <italic>James Clark Ross</italic> for all four AMT cruises. Sensors were calibrated prior to the start of each cruise. The hyperspectral downwelling irradiance (<italic>E<sub>s</sub>
</italic>) sensor was attached to the met-station on the ship&#x2019;s foremast (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>), to minimise obstructions from the ship shading the sensor. The two radiance sensors, measuring total water leaving radiance (<italic>L<sub>t</sub>
</italic>) and sky radiance (<italic>L<sub>i</sub>
</italic>), were mounted at the identical azimuth angle, and pointed at the water surface at an angle of 40&#xb0; from nadir and zenith respectively (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>). Data were collected at a frequency of 1-5 seconds, during day light hours.</p>
<p>Hyperspectral (at 2 nm resolution) remote sensing reflectance data (<italic>R<sub>rs</sub>
</italic>) were computed using the method described in <xref ref-type="bibr" rid="B55">Lin et&#xa0;al. (2022)</xref>. Briefly, this involved: interpolating the dark counts (collected at 10-minute intervals) for each sensor, to the times of the light data, and subtracting them from the light measurements; interpolating the (dark-count-corrected) light data to a common set of wavelengths (350 to 860, at 2 nm resolution) and a common time (based on the sensor with the slowest integration time); interpolating auxiliary ship data (wind, latitude, longitude, time, wind, heading, tilt, pitch, and roll) used for data filtering to the same time as the light measurements; filtering data according to a set criteria (&lt;5&#xb0; tilt, removing sun glint using the near-infrared signal, discarding data with high solar zenith angle (&gt;80&#xb0;) and relative azimuth angles &lt;100 and &gt;170&#xb0;, and any spectra with negative values at 443 nm); and computing <italic>R<sub>rs</sub>
</italic> by first computing water leaving radiance according to <italic>L<sub>w</sub>
</italic>=<italic>L<sub>t</sub>
</italic>&#x2212;<italic>&#x3c1;L<sub>i</sub>
</italic>&#x2212;<italic>&#x394;L</italic>, where <italic>&#x3c1;</italic> is the sea-surface reflectance used to correct for the sun and sky light reflected by the sea surface, and &#x394;<italic>L</italic> is a spectrally-flat residual term representing contributions due to glint, foam, sea spray and whitecaps (both derived using an non-linear optimization technique), then dividing <italic>L<sub>w</sub>
</italic> by <italic>E<sub>s</sub>
</italic> to get <italic>R<sub>rs</sub>
</italic>. Further details of the processing are provided in <xref ref-type="bibr" rid="B55">Lin et&#xa0;al. (2022)</xref>. In addition to <italic>R<sub>rs</sub>
</italic>, the method of <xref ref-type="bibr" rid="B55">Lin et&#xa0;al. (2022)</xref> also included a full uncertainty propagation method, following the Law of Propagation of Uncertainty, and provides robust uncertainty estimates with each <italic>R<sub>rs</sub>
</italic> measurement (see <xref ref-type="bibr" rid="B55">Lin et&#xa0;al. (2022)</xref> for further details).</p>
<p>At each station for which <italic>R<sub>rs</sub>
</italic> data passed the filtering criteria, data were extracted between 20 minutes prior to and 60 minutes after the start time of the station (stations were typically &gt;1 hour in duration). Data 20 minutes prior were included, as at this point, the ship slows down to arrive at the station and reorientates its position, allowing data to be available (during the orientation process) for cases where the ship&#x2019;s final position (relative azimuth angle) at the station was not ideal for data collection. All 2-min binned <italic>R<sub>rs</sub>
</italic> data available during this period at each station were analysed and the spectra with the lowest average <italic>R<sub>rs</sub>
</italic> uncertainty between 400-600 nm were selected (data outside the range of 0 and 20% uncertainty were excluded). This resulted in <italic>R<sub>rs</sub>
</italic> data at 101 stations. <italic>R<sub>rs</sub>
</italic> data were bidirectionally corrected using the method of <xref ref-type="bibr" rid="B53">Lee et&#xa0;al. (2011)</xref> and are plotted in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref> and coloured according to the Chl-a concentration at the station. A proxy of sky conditions was also derived using the ratio of <italic>L<sub>i</sub>
</italic>(750)/<italic>E<sub>s</sub>
</italic>(750), using data processed over a one hour duration after the start of the station following the method of <xref ref-type="bibr" rid="B12">Brewin et&#xa0;al. (2016)</xref>, removing any unrealistic data where the ratio was <inline-formula>
<mml:math display="inline" id="im5">
<mml:mrow>
<mml:mi>&#x2265;</mml:mi>
<mml:mn>1</mml:mn>
<mml:mo stretchy="false">/</mml:mo>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>. Median values of <italic>L<sub>i</sub>
</italic>(750)/<italic>E<sub>s</sub>
</italic>(750) were extracted from each station as were standard deviations (defined as the range of distribution that lies within the percentiles of one standard deviation). Clear skies are known to be approximately 0.02 (<xref ref-type="bibr" rid="B62">Mobley, 1999</xref>) and fully overcast in the order 0.3 (<xref ref-type="bibr" rid="B84">Ruddick et&#xa0;al., 2006</xref>). To cross-check with the notes from the Secchi disk observations, we computed the median of all <italic>L<sub>i</sub>
</italic>(750)/<italic>E<sub>s</sub>
</italic>(750) data where the observer had reported overcast skies and found that to be 0.264 ( &#xb1; 0.083) and the median of all other stations to be 0.046 ( &#xb1; 0.068), showing consistency in the two datasets.</p>
<p>The <italic>in-situ R<sub>rs</sub>
</italic> data were used to compute the maximum blue-green band ratio (max{<italic>R<sub>rs</sub>
</italic>(443), <italic>R<sub>rs</sub>
</italic>(490), <italic>R<sub>rs</sub>
</italic>(510)}/<italic>R<sub>rs</sub>
</italic>(555)), hereafter denoted <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) that was subsequently used to show changes in the relationship between the maximum band ratio and Chl-a concentration, using the NASA OC4v6 algorithm (<xref ref-type="bibr" rid="B67">NASA, 2010</xref>). Additionally, Secchi depth (<italic>z<sub>SD</sub>
</italic>) was estimated from <italic>R<sub>rs</sub>
</italic> and the solar zenith angle (see Section 2.3.6) data using the algorithms of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> and <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref>. An initial step in the computation of <italic>z<sub>SD</sub>
</italic> using both algorithms, is the estimation of inherent optical properties from <italic>R<sub>rs</sub>
</italic>, using the Quasi-Analytical Algorithm (QAA) (<xref ref-type="bibr" rid="B46">Lee et&#xa0;al., 2002</xref>, <xref ref-type="bibr" rid="B48">2009</xref>). Here, we incorporated a Raman scattering correction on <italic>R<sub>rs</sub>
</italic> prior to inversion, following <xref ref-type="bibr" rid="B74">Pitarch et&#xa0;al. (2020)</xref>, and used updates on the parameters that relate non-water absorption at 555 nm to <italic>R<sub>rs</sub>
</italic>, as described in <xref ref-type="bibr" rid="B76">Pitarch and Vanhellemont (2021)</xref>. The Forel-Ule colour (<italic>F</italic>) was estimated from hyperspectral <italic>R<sub>rs</sub>
</italic> data by computing the hue angle using the approach of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and then converting the hue angle into <italic>F</italic> following <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref>.</p>
</sec>
<sec id="s2_3_6">
<label>2.3.6</label>
<title>Auxiliary observations</title>
<p>A series of auxiliary measurements were averaged (mean of 90 percentile distribution) over the duration of each station (1&#xa0;h after the start time of the station), and standard deviations computed (range of distribution that lies within the percentiles of one standard deviation). These data include: wind speed (<italic>w<sub>s</sub>
</italic>) measurements, which were collected continuously from the anemometer located on the met-platform of the ship&#x2019;s foremast (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>), and corrected for ship direction, course and speed (following <uri xlink:href="https://www.coaps.fsu.edu/woce/truewind/true-IDL.html">https://www.coaps.fsu.edu/woce/truewind/true-IDL.html</uri>); SST and SSS, when not available from the main CTD (taken as the median temperature and salinity values in layer between surface and <italic>z<sub>SD</sub>
</italic>), were extracted from continuous measurements collected by the ships underway CTD (SBE45); solar zenith angles (<italic>&#x3b8;</italic>) were computed as a function of time and location of the stations; standard deviations in the pitch (PSD) and roll (RSD) of the ship were taken from continuous measurements collected by the ship&#x2019;s gyro system; and above-surface PAR data were collected from the PAR sensor (Kipp &amp; Zonen) located on the met-platform of the ship&#x2019;s foremast.</p>
<p>In addition to AMT observations, we also used two databases of Secchi depth and Forel-Ule colour measurements, collected globally since 1890, from the US National Oceanographic Data Center (NODC) and from CalCOFI. NODC data were taken from the dataset assembled by <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> and are designed to represent global, case-1 (open ocean) conditions. <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> describe the NODC data mining and processing. Briefly, nearshore, shallow and unrealistic data were eliminated, and remaining data binned into one-by-one degree geographical cells. High sediment and CDOM-laden measurements were removed by eliminating Secchi disk depth measurements less than 6&#xa0;m. Forel-Ule measurements were constrained to values between 2 and 10. The total amount of NODC Secchi disk and Forel-Ule data used was 46,180 data points. The data are available through the NODC website (<uri xlink:href="https://www.ncei.noaa.gov/data/oceans/woa/WOD/DATA_SUBSETS/">https://www.ncei.noaa.gov/data/oceans/woa/WOD/DATA_SUBSETS/</uri>). The CalCOFI site is in clear waters off the Californian coastline, and has been operating since 1949. Sampling was made following a defined grid geographically distributed between 20&#xb0;N and 40&#xb0;N, and measurements were collected at a relatively consistent rate across the seasons. Data are downloadable from the project site (<uri xlink:href="https://calcofi.org/">https://calcofi.org/</uri>). Matched Secchi disk and Forel-Ule data exists between 1969 and 1972 and then from 1986 to 1998, and amounts to a total of 2046 matched data points.</p>
</sec>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results and discussion</title>
<sec id="s3_1">
<label>3.1</label>
<title>Comparison of optical measurements on AMT</title>
<p>
<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> shows a comparison of optical measurements collected on the four AMT cruises. Consistent with previous understanding (e.g., <xref ref-type="bibr" rid="B99">Wernand, 2011</xref>), we see tight inverse relationships between Secchi depth (<italic>z<sub>SD</sub>
</italic>) and Forel-Ule colour (<italic>F</italic>), with <italic>F</italic> explaining between 73-83% of the variance in <italic>z<sub>SD</sub>
</italic>, depending on the colour scale used (see <xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A&#x2013;D</bold>
</xref>). For the colour of the disk (at 1/2 the Secchi depth, <italic>F<sub>D,L</sub>
</italic> and <italic>F<sub>D,N</sub>
</italic>), and over the range of data collected, there appears to be a log-linear relationship between variables (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A, B</bold>
</xref>). For infinite depth, the LaMotte scale (<italic>F<sub>D,L</sub>
</italic>) also show a log-linear relationship (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>), but the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale (<italic>F<sub>I,N</sub>
</italic>) is closer to a log-log relationship, consistent with earlier models (<xref ref-type="bibr" rid="B99">Wernand, 2011</xref>, see <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>), albeit with differences in parameters. <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref> overlays the AMT data collected using the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale onto historical datasets from NODC and CalCOFI. We find the relationship between <italic>z<sub>SD</sub>
</italic> and infinite colour (<italic>F<sub>I,N</sub>
</italic>) on AMT to be in closer agreement with relationships between <italic>z<sub>SD</sub>
</italic> and <italic>F</italic> seen in both historical datasets, when compared with data on <italic>z<sub>SD</sub>
</italic> and the colour of the disk at 1/2 the Secchi depth (<italic>F<sub>D,N</sub>
</italic>). Particularly for lower <italic>F</italic> values (1-3). This result suggests that the majority of the Forel-Ule historical data may have been collected by looking directly at the colour of the water, rather than at the colour of the water above the disk at 1/2<italic>z<sub>SD</sub>
</italic>, as other literature has implied (<xref ref-type="bibr" rid="B103">Wernand and van der Woerd, 2010a</xref>). Further investigation is needed to ascertain if this is in fact correct, perhaps by reviewing historical information on the protocols used for collecting these earlier Forel-Ule measurements.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Comparison of optical measurements collected on the four AMT cruises. <bold>(A&#x2013;D)</bold> Secchi depth (<italic>z<sub>SD</sub>
</italic>) versus Forel-Ule colour (<italic>F</italic>), with subscripts <italic>D</italic> being colour of disk, <italic>I</italic> colour of infinite waters, <italic>L</italic> the LaMotte scale, and <italic>N</italic> the scale of <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref>. <bold>(E&#x2013;H)</bold> Maximum blue-green <italic>R<sub>rs</sub>
</italic> ratio (<italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic><bold>(G)</bold>) versus Forel-Ule colour (<italic>F</italic>). <bold>(I)</bold> Secchi depth (<italic>z<sub>SD</sub>
</italic>) versus <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic><bold>(G)</bold>. <bold>(J)</bold> Diffuse attenuation for PAR (10% light level, <italic>K<sub>d</sub>
</italic>) versus Secchi depth (<italic>z<sub>SD</sub>
</italic>). <bold>(K)</bold> Beam attenuation (650 nm) (<italic>c</italic>) minus that of pure water (<italic>c<sub>W</sub>
</italic>) versus Secchi depth (<italic>z<sub>SD</sub>
</italic>). <bold>(L)</bold> Euphotic depth (<italic>z<sub>p</sub>
</italic>) versus Secchi depth (<italic>z<sub>SD</sub>
</italic>). Solid lines are models fitted to the data. Dashed lines are earlier models, with W11 referring to the model of <xref ref-type="bibr" rid="B99">Wernand (2011)</xref> and L18 referring to models from <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Comparison of Secchi depth (<italic>z<sub>SD</sub>
</italic>) versus Forel-Ule colour (<italic>F</italic>) data collected on AMT (red circles and yellow triangles) with historical datasets from NODC and CalCOFI. Note that <italic>F<sub>I,N</sub>
</italic> is a synthetic quantity that derives from <italic>F<sub>D,N</sub>
</italic> and the model in <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g005.tif"/>
</fig>
<p>On AMT, relationships between the maximum band ratio (<italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G)) and <italic>F</italic> (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4E&#x2013;H</bold>
</xref>) are remarkably consistent with the relationships seen between <italic>z<sub>SD</sub>
</italic> and <italic>F</italic> (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A&#x2013;D</bold>
</xref>), with <italic>F</italic> explaining between 69-80% of the variance in <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G). This is due to a tight relationship observed between <italic>z<sub>SD</sub>
</italic> and <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4I</bold>
</xref>). Inverse relationships between both diffuse and beam attenuation and <italic>z<sub>SD</sub>
</italic> were also observed (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4J, K</bold>
</xref>), with the former (<italic>K<sub>d</sub>
</italic>=1.3/<italic>z<sub>SD</sub>
</italic>) in good agreement with the relationship proposed by <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref>, (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4J</bold>
</xref>, <italic>K<sub>d</sub>
</italic> = 1.48/<italic>z<sub>SD</sub>
</italic>), with differences possibly related to environmental conditions, considering the <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref> relationship is for a fixed solar zenith angle (<italic>&#x3b8;</italic>) of 30 degrees, and a fixed wind speed (<italic>w<sub>s</sub>
</italic>) of 5 ms<sup>&#x2212;1</sup>. We also see good agreement between the euphotic depth (<italic>z<sub>p</sub>
</italic>) and <italic>z<sub>SD</sub>
</italic> (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4L</bold>
</xref>, <italic>z<sub>p</sub>
</italic>=3.67z<italic>
<sub>SD</sub>
</italic>), with no significant difference to the relationship proposed by <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref> (where <italic>z<sub>p</sub>
</italic> is equal to 3.55 (&#xb1; 0.15) times <italic>z<sub>SD</sub>
</italic>).</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Relationships between surface Chl-a and optical properties on AMT</title>
<p>
<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref> shows a comparison of Chl-a and optical measurements collected on the four AMT cruises. We find <italic>z<sub>SD</sub>
</italic> to be tightly correlated with Chl-a, explaining around 85% of its variance (<italic>r<sup>2</sup>=</italic>0.85, on log<sub>10</sub>-transformed variables). The relationship between <italic>z<sub>SD</sub>
</italic> and Chl-a is in good agreement with published models (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>; <xref ref-type="bibr" rid="B65">Morel et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B50">Lee et&#xa0;al., 2018c</xref>). Systematic differences (accuracy, <italic>&#x3b4;</italic>) are close to zero for the models of <xref ref-type="bibr" rid="B65">Morel et&#xa0;al. (2007)</xref> and <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref>, with the a small bias for the model of <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). The models of <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> and <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref> have slightly better precision (&#x394;, <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>) than the <xref ref-type="bibr" rid="B65">Morel et&#xa0;al. (2007)</xref> model. Fitting a power-law model to the data [<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>, the same mathematical model to that of <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref> and <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>] reduces the bias (<italic>&#x3b4;</italic>) to zero, with no improvement in precision (&#x394;), and obtained parameters are found not to be significantly different to those of <xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref> (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). Statistical tests indicate that the retrieval of surface Chl-a from <italic>z<sub>SD</sub>
</italic> is comparable, in precision and accuracy, to retrievals of Chl-a using satellite ocean colour algorithms in the Atlantic Ocean (<xref ref-type="bibr" rid="B12">Brewin et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B93">Tilstone et&#xa0;al., 2021</xref>). Residuals in log<sub>10</sub>(Chl-a), between the fitted power model and Chl-a data, were positively correlated with wind speed and <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G), and inversely correlated with log<sub>10</sub>(Chl-a) (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). The latter two (which are inversely related, see <xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>) perhaps suggesting the mathematical formulation of the relationship (power function) may need further consideration, with there being a slight tendency for the model to overestimate log<sub>10</sub>(Chl-a) at lower concentrations and underestimate it at higher concentrations. Other fitting functions were explored, including log-linear and polynomial fits (data not shown), but they also showed the same tendency, suggesting this may be related to the distribution of the dataset. The positive correlation between residuals and wind speed (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>), suggested that for the same Chl-a, as the wind speed increases, the observer sees a shallower Secchi depth. This is consistent with theory on the impact of wind speed on the apparent contrast of the disk (<xref ref-type="bibr" rid="B78">Preisendorfer, 1986</xref>). However, multi-linear regression (not shown) of log<sub>10</sub>(Chl-a) as a function of both log<sub>10</sub>(<italic>z<sub>SD</sub>
</italic>) and wind speed, yielded no significant increase in <italic>r</italic>
<sup>2</sup> over log<sub>10</sub>(<italic>z<sub>SD</sub>
</italic>) alone (Z-test, p&gt;0.05), suggesting any such effect is minor. No relationship was found between the VGI and VCI, and the residuals in log<sub>10</sub>(Chl-a), between the fitted power model and Chl-a data.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Relationship between historical and modern optical properties and the chlorophyll-a concentration (Chl-a) on the four AMT cruises. <bold>(A)</bold> Comparison of Chl-a and Secchi depth (<italic>z<sub>SD</sub>
</italic>). <bold>(B)</bold> Comparison of Chl-a and maximum blue-green <italic>R<sub>rs</sub>
</italic> ratio (<italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic><bold>(G)</bold>). <bold>(C)</bold> Comparison of Chl-a and Forel-Ule colour using the LaMotte scale and with reference to the colour of the disk at 1/2<italic>z<sub>SD</sub>
</italic> (<italic>F</italic>
<sub>D,L</sub>). <bold>(D)</bold> Comparison of Chl-a and Forel-Ule colour using the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale and with reference to the colour of the disk at 1/2z<italic>
<sub>SD</sub>
</italic> (<italic>F</italic>
<sub>D,N</sub>). <bold>(E)</bold> Comparison of Chl-a and Forel-Ule colour using the LaMotte scale and with reference to infinite water (<italic>F</italic>
<sub>I,L</sub>). <bold>(F)</bold> Comparison of Chl-a and Forel-Ule colour using the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale and with reference to infinite water (<italic>F</italic>
<sub>I,N</sub>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g006.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Algorithms tested to predict Chl-a [mg m<sup>&#x2212;3</sup>] (dependent variable) from historic and modern optical measurements (independent variable, models tuned to data, denoted &#x201c;This Study&#x201d; in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Independent variable</th>
<th valign="top" align="left">Reference</th>
<th valign="top" align="left">Algorithm</th>
<th valign="top" align="left">
<italic>r</italic> <sup>2 &#x2217;</sup>
</th>
<th valign="top" align="left">&#x394; <sup>&#x2217;</sup>
</th>
<th valign="middle" align="left">
<italic>&#x3b4;</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="left">
<italic>N</italic>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B65">Morel et&#xa0;al. (2007)</xref>
<sup>$</sup>
</td>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im6">
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>8.5</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>12.6</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mtext>Chl</mml:mtext>
<mml:mo>&#x2013;</mml:mo>
<mml:mtext>a</mml:mtext>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>+</mml:mo>
<mml:mn>7.36</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mtext>Chl</mml:mtext>
<mml:mo>&#x2013;</mml:mo>
<mml:mtext>a</mml:mtext>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.43</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mtext>Chl</mml:mtext>
<mml:mo>&#x2013;</mml:mo>
<mml:mtext>a</mml:mtext>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mn>3</mml:mn>
</mml:msup>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.85</td>
<td valign="top" align="left">0.162</td>
<td valign="top" align="left">0.026</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>
</td>
<td valign="top" align="left">Chl-a = <italic>&#x3b1;z<sub>SD</sub>
<sup>&#x3b2;</sup>
</italic> (<italic>&#x3b1;</italic> = 143.29, <italic>&#x3b2;</italic> = &#x2212;2.082)</td>
<td valign="top" align="left">0.85</td>
<td valign="top" align="left">0.157</td>
<td valign="top" align="left">0.124</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B50">Lee et&#xa0;al. (2018c)</xref>
</td>
<td valign="top" align="left">Chl-a = <italic>&#x3b1;z<sub>SD</sub>
<sup>&#x3b2;</sup>
</italic> (<italic>&#x3b1;</italic> = 293.9, <italic>&#x3b2;</italic> = &#x2212;2.345)</td>
<td valign="top" align="left">0.85</td>
<td valign="top" align="left">0.152</td>
<td valign="top" align="left">0.068</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="left">This Study<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a = <italic>&#x3b1;z<sub>SD</sub>
<sup>&#x3b2;</sup>
</italic> <inline-formula>
<mml:math display="inline" id="im9">
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>253.7</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>201.7</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>319.1</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mi>&#x3b2;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.349</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.432</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.265</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.85</td>
<td valign="top" align="left">0.152</td>
<td valign="top" align="left">&#x2212;0.001</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im10">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B67">NASA (2010</xref>, OC4v6)</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im11">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>0.3272</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.9940</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>+</mml:mo>
<mml:mn>2.7218</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.2259</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>3</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.5683</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>4</mml:mn>
</mml:msup>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.87</td>
<td valign="top" align="left">0.139</td>
<td valign="top" align="left">&#x2212;0.109</td>
<td valign="top" align="left">101</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im12">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">This Study (OC4)<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im13">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>0.3822</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.6372</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>-</mml:mo>
<mml:mn>1.8880</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>+</mml:mo>
<mml:mn>3.4805</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>3</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.8068</mml:mn>
<mml:msub>
<mml:mrow>
<mml:mi>log</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>4</mml:mn>
</mml:msup>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.89</td>
<td valign="top" align="left">0.128</td>
<td valign="top" align="left">0.000</td>
<td valign="top" align="left">101</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im14">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">This Study<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im15">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mo>&#x3f5;</mml:mo>
<mml:msup>
<mml:mrow><mml:mo>(</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mfrac>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mi>&#x3b3;</mml:mi>
</mml:msup>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mo>&#x3f5;</mml:mo>
<mml:mo>=</mml:mo>
<mml:mn>2.10</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>1.87</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>2.37</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mtext>&#xa0;&#x3b3;</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.78</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.84</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.72</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.89</td>
<td valign="top" align="left">0.129</td>
<td valign="top" align="left">0.003</td>
<td valign="top" align="left">101</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,L</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>
<sup>%</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im16">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>L</mml:mi>
</mml:mrow>
<mml:mtext mathvariant="italic">&#x3b7;</mml:mtext>
</mml:msup>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.016</mml:mn>
<mml:mo>,</mml:mo>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mi>&#x3b7;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>2.44</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.65</td>
<td valign="top" align="left">0.243</td>
<td valign="top" align="left">0.510</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,L</sub>
</italic>
</td>
<td valign="top" align="left">This Study<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im17">
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c5;</mml:mi>
<mml:mo>+</mml:mo>
<mml:mi>&#x3b5;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msup>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c5;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.246</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.289</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2.203</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mi>&#x3be;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.345</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>0.326</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.364</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.71</td>
<td valign="top" align="left">0.215</td>
<td valign="top" align="left">&#x2212;0.001</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,N</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>
<sup>%</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im18">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>N</mml:mi>
</mml:mrow>
<mml:mtext mathvariant="italic">&#x3b7;</mml:mtext>
</mml:msup>
</mml:mrow>

</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.016</mml:mn>
<mml:mo>,</mml:mo>
<mml:mtext>&#x3b7;</mml:mtext>
<mml:mo>=</mml:mo>
<mml:mn>2.44</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.79</td>
<td valign="top" align="left">0.176</td>
<td valign="top" align="left">0.260</td>
<td valign="top" align="left">93</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,N</sub>
</italic>
</td>
<td valign="top" align="left">This Study<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im19">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>N</mml:mi>
</mml:mrow>
<mml:mtext mathvariant="italic">&#x3b7;</mml:mtext>
</mml:msup>
</mml:mrow>

</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.0114</mml:mn>
<mml:mo>,</mml:mo>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>0.0103</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.0126</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mi>&#x3b7;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>2.23</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>2.21</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>2.25</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.81</td>
<td valign="top" align="left">0.176</td>
<td valign="top" align="left">&#x2212;0.003</td>
<td valign="top" align="left">102</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,L</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>
<sup>%</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im20">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>L</mml:mi>
</mml:mrow>
<mml:mtext mathvariant="italic">&#x3b7;</mml:mtext>
</mml:msup>
</mml:mrow>

</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.016</mml:mn>
<mml:mo>,</mml:mo>
<mml:mi>&#x3b7;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>2.44</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.70</td>
<td valign="top" align="left">0.213</td>
<td valign="top" align="left">0.189</td>
<td valign="top" align="left">101</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,L</sub>
</italic>
</td>
<td valign="top" align="left">This Study<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im21">
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c5;</mml:mi>
<mml:mo>+</mml:mo>
<mml:mi>&#x3c5;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>L</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msup>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c5;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.781</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.824</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1.738</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mi>&#x3be;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.345</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>0.292</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.331</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.72</td>
<td valign="top" align="left">0.210</td>
<td valign="top" align="left">&#x2212;0.001</td>
<td valign="top" align="left">127</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,N</sub>
</italic>
</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>
<sup>%</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im22">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>N</mml:mi>
</mml:mrow>
<mml:mtext mathvariant="italic">&#x3b7;</mml:mtext>
</mml:msup>
</mml:mrow>

</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.016</mml:mn>
<mml:mo>,</mml:mo>
<mml:mi>&#x3b7;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>2.44</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.59</td>
<td valign="top" align="left">0.221</td>
<td valign="top" align="left">&#x2212;0.035</td>
<td valign="top" align="left">41</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,N</sub>
</italic>
</td>
<td valign="top" align="left">This Study<sup>#</sup>
</td>
<td valign="top" align="left">Chl-a<inline-formula>
<mml:math display="inline" id="im23">
<mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3c4;</mml:mi>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>I</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>N</mml:mi>
</mml:mrow>
<mml:mtext mathvariant="italic">&#x3b7;</mml:mtext>
</mml:msup>
</mml:mrow>

</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x3c4;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.0522</mml:mn>
<mml:mo>,</mml:mo>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>0.0473</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.0576</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mi>&#x3b7;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>1.49</mml:mn>
<mml:mrow>
<mml:mo>[</mml:mo>
<mml:mrow>
<mml:mn>1.48</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>1.51</mml:mn>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.81</td>
<td valign="top" align="left">0.173</td>
<td valign="top" align="left">&#x2212;0.003</td>
<td valign="top" align="left">102</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>*</sup>Statistical tests performed on log<sub>10</sub>-transformed Chl-a, owing to the distribution of Chl-a on AMT being close to log-normal (<xref ref-type="bibr" rid="B12">Brewin et al., 2016</xref>), as typically found in open ocean waters (<xref ref-type="bibr" rid="B20">Campbell, 1995</xref>).</p>
</fn>
<fn>
<p>
<sup>$</sup>Look-Up Table (LUT) of model made for every 0.001 mg m<sup>&#x2212;3</sup> Chl-a, from 0.001 to 5.0 mg m<sup>&#x2212;3</sup>. <italic>z<sub>SD</sub>
</italic> compared with LUT and closest match used to extract modelled Chl-a.</p>
</fn>
<fn>
<p>
<sup>#</sup>Model is tuned to the data (not independent of the dataset). Square brackets are upper and lower confidence limit based on one standard deviation.</p>
</fn>
<fn>
<p>
<sup>%</sup>Model tested only on data within the range for which it was parametrised (only designed for &gt;=2 Forel-Ule).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Residuals between estimated log<sub>10</sub>(Chl-a), from <italic>Z<sub>SD</sub>
</italic>, <italic>F<sub>D,L</sub>
</italic>, <italic>F<sub>D,N</sub>
</italic> and <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) (independent variables), and measured log<sub>10</sub>(Chl-a), correlated with environmental variables (EV).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">EV</th>
<th valign="top" colspan="2" align="center">
<italic>z<sub>SD</sub>
</italic>
</th>
<th valign="top" colspan="2" align="center">
<italic>F<sub>D,L</sub>
</italic>
</th>
<th valign="top" colspan="2" align="center">
<italic>F<sub>D,N</sub>
</italic>
</th>
<th valign="top" colspan="2" align="center">
<inline-formula>
<mml:math display="inline" id="im1000">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mtext>MB</mml:mtext>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mtext>G</mml:mtext>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</th>
</tr>
<tr>
<th valign="top" align="left"/>
<th valign="top" align="center">
<italic>r</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>p</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>r</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>p</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>r</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>p</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>r</italic> <sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>p</italic> <sup>&#x2217;</sup>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im24">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mn>750</mml:mn>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mn>750</mml:mn>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">0.046</td>
<td valign="top" align="center">0.609</td>
<td valign="top" align="center">
<bold>&#x2212;0.185</bold>
</td>
<td valign="top" align="center">
<bold>0.039</bold>
</td>
<td valign="top" align="center">&#x2212;0.082</td>
<td valign="top" align="center">0.417</td>
<td valign="top" align="center">&#x2212;0.067</td>
<td valign="top" align="center">0.507</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>w<sub>s</sub>
</italic>
</td>
<td valign="top" align="center">
<bold>0.238</bold>
</td>
<td valign="top" align="center">
<bold>0.008</bold>
</td>
<td valign="top" align="center">0.142</td>
<td valign="top" align="center">0.114</td>
<td valign="top" align="center">&#x2212;0.019</td>
<td valign="top" align="center">0.850</td>
<td valign="top" align="center">&#x2212;0.066</td>
<td valign="top" align="center">0.510</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>&#x3b8;</italic>
</td>
<td valign="top" align="center">&#x2212;0.112</td>
<td valign="top" align="center">0.208</td>
<td valign="top" align="center">
<bold>&#x2212;0.303</bold>
</td>
<td valign="top" align="center">
<bold>0.001</bold>
</td>
<td valign="top" align="center">
<bold>&#x2212;0.247</bold>
</td>
<td valign="top" align="center">
<bold>0.012</bold>
</td>
<td valign="top" align="center">0.057</td>
<td valign="top" align="center">0.572</td>
</tr>
<tr>
<td valign="top" align="left">PSD</td>
<td valign="top" align="center">0.053</td>
<td valign="top" align="center">0.557</td>
<td valign="top" align="center">&#x2212;0.018</td>
<td valign="top" align="center">0.841</td>
<td valign="top" align="center">0.106</td>
<td valign="top" align="center">0.296</td>
<td valign="top" align="center">&#x2212;0.160</td>
<td valign="top" align="center">0.110</td>
</tr>
<tr>
<td valign="top" align="left">RSD</td>
<td valign="top" align="center">&#x2212;0.007</td>
<td valign="top" align="center">0.934</td>
<td valign="top" align="center">&#x2212;0.002</td>
<td valign="top" align="center">0.985</td>
<td valign="top" align="center">0.043</td>
<td valign="top" align="center">0.668</td>
<td valign="top" align="center">&#x2212;0.131</td>
<td valign="top" align="center">0.193</td>
</tr>
<tr>
<td valign="top" align="left">PAR</td>
<td valign="top" align="center">0.031</td>
<td valign="top" align="center">0.031</td>
<td valign="top" align="center">0.156</td>
<td valign="top" align="center">0.084</td>
<td valign="top" align="center">0.113</td>
<td valign="top" align="center">0.266</td>
<td valign="top" align="center">&#x2212;0.001</td>
<td valign="top" align="center">0.989</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="center">&#x2212;0.001</td>
<td valign="top" align="center">0.989</td>
<td valign="top" align="center">
<bold>0.362</bold>
</td>
<td valign="top" align="center">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="center">0.115</td>
<td valign="top" align="center">0.250</td>
<td valign="top" align="center">0.118</td>
<td valign="top" align="center">0.241</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,L</sub>
</italic>
</td>
<td valign="top" align="center">&#x2212;0.127</td>
<td valign="top" align="center">0.153</td>
<td valign="top" align="center">0.002</td>
<td valign="top" align="center">0.986</td>
<td valign="top" align="center">&#x2212;0.02</td>
<td valign="top" align="center">0.831</td>
<td valign="top" align="center">&#x2212;0.09</td>
<td valign="top" align="center">0.350</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,N</sub>
</italic>
</td>
<td valign="top" align="center">&#x2212;0.110</td>
<td valign="top" align="center">0.270</td>
<td valign="top" align="center">&#x2212;0.305</td>
<td valign="top" align="center">0.002</td>
<td valign="top" align="center">0.115</td>
<td valign="top" align="center">0.248</td>
<td valign="top" align="center">&#x2212;0.137</td>
<td valign="top" align="center">0.225</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im25">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">
<bold>0.234</bold>
</td>
<td valign="top" align="center">
<bold>0.018</bold>
</td>
<td valign="top" align="center">
<bold>0.367</bold>
</td>
<td valign="top" align="center">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="center">0.098</td>
<td valign="top" align="center">0.385</td>
<td valign="top" align="center">&#x2212;0.019</td>
<td valign="top" align="center">0.847</td>
</tr>
<tr>
<td valign="top" align="left">log<sub>10</sub>(Chl-a)</td>
<td valign="top" align="center">
<bold>&#x2212;0.376</bold>
</td>
<td valign="top" align="center">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="center">
<bold>0.540</bold>
</td>
<td valign="top" align="center">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="center">
<bold>&#x2212;0.297</bold>
</td>
<td valign="top" align="center">
<bold>0.002</bold>
</td>
<td valign="top" align="center">
<bold>&#x2212;0.331</bold>
</td>
<td valign="top" align="center">
<bold>&lt;0.001</bold>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>*</sup>Bold text indicates significant correlation at the 95% level (<italic>p</italic>&lt;0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Of all the optical proxies tested, <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) was found to explain the greatest variance in Chl-a (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>, <italic>r</italic>
<sup>2</sup>= 0.89, on log<sub>10</sub>-transformed variables). The NASA OC4v6 algorithm was found to have a tendency to underestimate Chl-a in the Atlantic (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>, <italic>&#x3b4;</italic> = &#x2212;0.109), consistent with earlier work (<xref ref-type="bibr" rid="B92">Szeto et&#xa0;al., 2011</xref>). A retuning of the OC4v6 algorithm removed this bias, and showed improvements in both precision (&#x394;) and <italic>r</italic>
<sup>2</sup> (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). The retuning was also found to show a strong linear dependency (on log<sub>10</sub>-transformed data) between variables, suggesting a simpler (more parsimonious) linear model to be more appropriate than a 4th order polynomial on this AMT dataset, which yielded statistically similar results to the retuned polynomial (OC4 <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). We found a small dependency in the residuals of this linear model and log<sub>10</sub>(Chl-a), similar to the <italic>z<sub>SD</sub>
</italic> fits and likely related to data distribution, but no other dependency between residuals and other environmental variables were observed (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) was shown to produce the highest <italic>r</italic>
<sup>2</sup> and lowest &#x394; of all variables tested (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). <italic>R
<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) only performs marginally better as a predictive variable of Chl-a, than <italic>z<sub>SD</sub>
</italic> (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>), on the AMT.</p>
<p>All four Forel-Ule datasets (<italic>F<sub>D,L</sub>
</italic>, <italic>F<sub>D,N</sub>
</italic>, <italic>F<sub>I,L</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic>) were positively correlated with Chl-a, explaining between 71-81% of the variance in log<sub>10</sub>-transformed Chl-a (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6C&#x2013;F</bold>
</xref>). The <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale data (<italic>F<sub>D,N</sub>
</italic>, <italic>F<sub>I,N</sub>
</italic>) were found to correlate more tightly to Chl-a (explaining around 81% of the variance) than the LaMotte scale data (explaining around 71% of the variance), with the <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> scale data predicting Chl-a with the highest accuracy using a power function (linear-function in log<sub>10</sub> space), consistent with the model of <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref>, with the LaMotte scale data best described using a log-linear relationship (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6C&#x2013;F</bold>
</xref>; <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). For Forel-Ule data greater than 2, the lower limit of the range of data in which the <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> model was trained on, the <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> model is seen to overestimate Chl-a when using <italic>F<sub>D,L</sub>
</italic> and <italic>F<sub>D,N</sub>
</italic> as input (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6C, D</bold>
</xref>; <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>), with better agreement (biases (<italic>&#x3b4;</italic>) closer to zero) when using <italic>F<sub>I,L</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic> as input (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6E, F</bold>
</xref>; <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). This is consistent with the Forel-Ule infinite colour data collected on AMT being in closer agreement with historical datasets than data collected on the colour of the water above the disk at 1/2<italic>z<sub>SD</sub>
</italic> (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>), considering the <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> model was parameterised on these historical data. As with the <italic>z<sub>SD</sub>
</italic> and <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) models, there is a dependency in Forel-Ule model residuals (log<sub>10</sub>(Chl-a) model minus data) on log<sub>10</sub>(Chl-a) (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>, positive for <italic>F<sub>D,L</sub>
</italic> and negative for <italic>F<sub>D,N</sub>
</italic>), likely related to data distribution. The LaMotte model residuals were also correlated with <italic>L<sub>i</sub>
</italic>(750)/<italic>E<sub>s</sub>
</italic>(750), <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) and <italic>z<sub>SD</sub>
</italic> (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). Residuals in both models were also found to be correlated with solar zenith angle (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). This may suggest the sky conditions had some impact on data collection, possibly influencing the apparent colour of the disk, although no relationship was found between residuals and the VGI and VCI. Whereas measuring Forel-Ule of infinite water directly is useful for testing the <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref> conversion, and more in-line with the historical observations (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>), it is difficult to observe subtle variations in Chl-a at low concentrations, since the Forel-Ule saturates at the lowest value (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>). In fact, this is a key reason <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al. (2012)</xref> excluded Forel-Ule data less than two in their algorithm. Instead, by measuring the colour of the disk at 1/2<italic>z<sub>SD</sub>
</italic>, the observer can track these subtle changes in colour at very low Chl-a (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>), as the scale has not saturated at its lowest value.</p>
<p>Whereas it is clear from this analysis that modern optical tools for estimating Chl-a (<italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G)) performed the best (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>), it is nonetheless remarkable how well the historical tools performed, with some (e.g., <italic>z<sub>SD</sub>
</italic>) only marginally lower in performance than the modern method, and with a higher number of observations (less effected by environmental constrains in data collection). These results supports the merging of historical data with modern methods (e.g., satellite remote sensing) in search of long term trends in Chl-a, providing systematic differences can be identified, and acknowledging the challenges in bridging data collected at very different temporal and spatial scales (<xref ref-type="bibr" rid="B7">Boyce et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B85">Rykaczewski and Dunne, 2011</xref>; <xref ref-type="bibr" rid="B8">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B6">Boyce et&#xa0;al., 2014</xref>). Models proposed here are nonetheless limited to the range of data they have been calibrated with, to case-1 open-ocean waters, and to the Atlantic Ocean. Caution is also needed when applying such models, developed between 2013-2018, to data collected in the past, since the relationships among Secchi depth, Forel-Ule colour, <italic>R<sub>rs</sub>
</italic>, and Chl-a, could themselves be sensitive to climate change.</p>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Evaluating algorithms for estimating Secchi depth and Forel-Ule colour from remote-sensing reflectance on AMT</title>
<p>The AMT is, and has been, widely used as a platform for evaluating Chl-a remote-sensing algorithms (<xref ref-type="bibr" rid="B70">O&#x2019;Reilly et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B12">Brewin et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B93">Tilstone et&#xa0;al., 2021</xref>), owing to the fact the transect samples such a wide variety of biogeochemical provinces. Here, we extend the range of remote-sensing variables evaluated on AMT, to include the Secchi depth and Forel-Ule colour.</p>
<p>
<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref> and <xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref> show results from a statistical comparison between Forel-Ule data derived using the <italic>R<sub>rs</sub>
</italic>-based methods of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> and that from the four <italic>in-situ</italic> datasets collected on AMT. The <italic>R<sub>rs</sub>
</italic>-based method performs well in the comparison, with <italic>r</italic>
<sup>2</sup> values ranging from 0.64 to 0.70, and unbiased root mean square differences (&#x394;) ranging from 0.48 to 0.71 (<xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>). As expected, the <italic>R<sub>rs</sub>
</italic>-based method is in better agreement with the infinite colour <italic>in-situ</italic> datasets, with biases (<italic>&#x3b4;</italic>) closer to zero for <italic>F<sub>I,L</sub>
</italic>, <italic>F<sub>I,N</sub>
</italic> and <italic>F<sub>I,A</sub>
</italic>, than for <italic>F<sub>D</sub>,<sub>L</sub>
</italic>, <italic>F<sub>D,N</sub>
</italic> (<xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>). Linear regression between data shows the biases to vary systematically over the range of Forel-Ule data, with the <italic>F<sub>I,L</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic> in better agreement with the <italic>R<sub>rs</sub>
</italic>-based method at lower values (&lt;4), but deviating significantly at higher values (&gt;4, <xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>; <xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>), with differences (residuals) between the <italic>R<sub>rs</sub>
</italic>-based method and <italic>F<sub>I,N</sub>
</italic> data inversely correlated with changes in Forel-Ule (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). These residuals were also found to be correlated with wind speed, the pitch and roll of the vessel, the Secchi depth and log<sub>10</sub>(Chl-a) (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). Interestingly, the slope of the regression in the statistical comparison between the <italic>R<sub>rs</sub>
</italic>-based method and <italic>F<sub>I,A</sub>
</italic> (phone app) data was closer to one, and the bias (<italic>&#x3b4;</italic>) closer to zero, when compared with other data (<xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>). Furthermore, differences (residuals) between the <italic>R<sub>rs</sub>
</italic>-based method and <italic>F<sub>I,A</sub>
</italic> data were not significantly correlated with any environmental variables (data not shown), acknowledging that only one cruise (AMT26) of <italic>F<sub>I,A</sub>
</italic> data were available in the analysis. <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref> shows the transect of <italic>F</italic> data for AMT26. All infinite <italic>F</italic> data are in good agreement at low values, but at higher values towards the end of the cruise (in the South Atlantic), the <italic>F<sub>I,L</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic> are significantly higher than both the <italic>F<sub>I,A</sub>
</italic> (phone app) data and the <italic>R<sub>rs</sub>
</italic>-based method, with the latter two in very good agreement. It may be that the conversion between the colour of the disk and infinite colour used here (<xref ref-type="bibr" rid="B71">Pitarch, 2017</xref>) to derive <italic>F<sub>I,L</sub>
</italic> and <italic>F<sub>I,N</sub>
</italic>, which performs very well at lower values (&lt;4) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>), requires revaluation at higher <italic>F</italic> values (&gt;4).</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Comparison of <italic>R<sub>rs</sub>
</italic>-derived Forel-Ule colour (<italic>F</italic>) and Secchi depth (<italic>z<sub>SD</sub>
</italic>) with <italic>in-situ</italic> data. <bold>(A)</bold> <italic>R<sub>rs</sub>
</italic>-derived <italic>F</italic> using the methods of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> (V15N14) with <italic>in-situ F<sub>I,N</sub>
</italic> (<italic>F</italic> measured using the scale of <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> for the colour of the disk at half the Secchi depth, but converted to infinite colour using the method of <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref>). <bold>(B)</bold> <italic>R<sub>rs</sub>
</italic>-derived <italic>z<sub>SD</sub>
</italic> using the model of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> (L15) against <italic>in-situz<sub>SD</sub>
</italic>. <bold>(C)</bold> <italic>R<sub>rs</sub>
</italic>-derived <italic>z<sub>SD</sub>
</italic> using the model of <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> (J19) against <italic>in-situ z<sub>SD</sub>
</italic>. <italic>r</italic>
<sup>2</sup> is the squared Pearson correlation coefficient, <italic>&#x3b4;</italic> the mean difference (bias), &#x394; the unbiased root mean square difference, and <italic>N</italic> the number of samples.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g007.tif"/>
</fig>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>Comparison of <italic>R<sub>rs</sub>
</italic>-derived <italic>F</italic> using the <italic>R<sub>rs</sub>
</italic>-based methods of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref> with various <italic>in-situ F</italic> datasets collected on AMT.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">
<italic>In-situ</italic> F dataset</th>
<th valign="top" align="center">Linear regression<sup>&#x2217;</sup>
</th>
<th valign="top" align="center">
<italic>r</italic> <sup>2</sup>
</th>
<th valign="top" align="center">&#x394;</th>
<th valign="top" align="center">
<italic>&#x3b4;</italic>
</th>
<th valign="top" align="center">
<italic>N</italic>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,L</sub>
</italic>
</td>
<td valign="top" align="center">
<italic>Y</italic> = 0.82<italic>X</italic> &#x2212; 1.49</td>
<td valign="top" align="center">0.64</td>
<td valign="top" align="center">0.63</td>
<td valign="top" align="center">&#x2212;2.17</td>
<td valign="top" align="center">101</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,L</sub>
</italic>
</td>
<td valign="top" align="center">
<italic>Y</italic> = 0.75<italic>X</italic> &#x2212; 0.42</td>
<td valign="top" align="center">0.65</td>
<td valign="top" align="center">0.64</td>
<td valign="top" align="center">&#x2212;1.10</td>
<td valign="top" align="center">101</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,N</sub>
</italic>
</td>
<td valign="top" align="center">
<italic>Y</italic> = 0.69<italic>X</italic> &#x2212; 0.44</td>
<td valign="top" align="center">0.70</td>
<td valign="top" align="center">0.66</td>
<td valign="top" align="center">&#x2212;1.43</td>
<td valign="top" align="center">80</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,N</sub>
</italic>
</td>
<td valign="top" align="center">
<italic>Y</italic> = 0.65<italic>X</italic> + 0.36</td>
<td valign="top" align="center">0.68</td>
<td valign="top" align="center">0.71</td>
<td valign="top" align="center">&#x2212;0.38</td>
<td valign="top" align="center">80</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>I,A</sub>
</italic>
</td>
<td valign="top" align="center">
<italic>Y</italic> = 0.88<italic>X</italic> + 0.14</td>
<td valign="top" align="center">0.68</td>
<td valign="top" align="center">0.48</td>
<td valign="top" align="center">&#x2212;0.10</td>
<td valign="top" align="center">29</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>*<italic>Y</italic> represents the data from the <italic>R<sub>rs</sub>
</italic>-based methods of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B69">Novoa et al. (2014)</xref> and <italic>X</italic> the <italic>in-situ</italic> F data.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T5" position="float">
<label>Table&#xa0;5</label>
<caption>
<p>Residuals between estimated <italic>z<sub>SD</sub>
</italic> or <italic>F</italic> using <italic>R<sub>rs</sub>
</italic>-based models and <italic>in-situ</italic> data correlated with environmental variables (EV).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="left">EV</th>
<th valign="top" colspan="2" align="center">
<italic>z<sub>SD</sub>
</italic> (L15)</th>
<th valign="top" colspan="2" align="center">
<italic>z<sub>SD</sub>
</italic> (J19)</th>
<th valign="top" colspan="2" align="center">
<italic>F<sub>I,N</sub>
</italic> (V15N14)</th>
</tr>
<tr>
<th valign="top" align="center">
<italic>r <sup>&#x2217;</sup>
</italic>
</th>
<th valign="top" align="center">
<italic>p <sup>&#x2217;</sup>
</italic>
</th>
<th valign="top" align="center">
<italic>r <sup>&#x2217;</sup>
</italic>
</th>
<th valign="top" align="center">
<italic>p <sup>&#x2217;</sup>
</italic>
</th>
<th valign="top" align="center">
<italic>r <sup>&#x2217;</sup>
</italic>
</th>
<th valign="top" align="center">
<italic>p <sup>&#x2217;</sup>
</italic>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im26">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mn>750</mml:mn>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mn>750</mml:mn>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">0.043</td>
<td valign="top" align="left">0.673</td>
<td valign="top" align="left">0.065</td>
<td valign="top" align="left">0.515</td>
<td valign="top" align="left">&#x2212;0.071</td>
<td valign="top" align="left">0.532</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>w<sub>s</sub>
</italic>
</td>
<td valign="top" align="left">
<bold>0.286</bold>
</td>
<td valign="top" align="left">
<bold>0.004</bold>
</td>
<td valign="top" align="left">
<bold>0.197</bold>
</td>
<td valign="top" align="left">
<bold>0.048</bold>
</td>
<td valign="top" align="left">
<bold>&#x2212;0.243</bold>
</td>
<td valign="top" align="left">
<bold>0.030</bold>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>&#x3b8;</italic>
</td>
<td valign="top" align="left">
<bold>&#x2212;0.398</bold>
</td>
<td valign="top" align="left">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="left">&#x2212;0.133</td>
<td valign="top" align="left">0.186</td>
<td valign="top" align="left">0.147</td>
<td valign="top" align="left">0.193</td>
</tr>
<tr>
<td valign="top" align="left">PSD</td>
<td valign="top" align="left">0.148</td>
<td valign="top" align="left">0.139</td>
<td valign="top" align="left">0.112</td>
<td valign="top" align="left">0.263</td>
<td valign="top" align="left">
<bold>&#x2212;0.387</bold>
</td>
<td valign="top" align="left">
<bold>&lt;0.001</bold>
</td>
</tr>
<tr>
<td valign="top" align="left">RSD</td>
<td valign="top" align="left">0.048</td>
<td valign="top" align="left">0.635</td>
<td valign="top" align="left">0.130</td>
<td valign="top" align="left">0.194</td>
<td valign="top" align="left">
<bold>&#x2212;0.230</bold>
</td>
<td valign="top" align="left">
<bold>0.040</bold>
</td>
</tr>
<tr>
<td valign="top" align="left">PAR</td>
<td valign="top" align="left">0.128</td>
<td valign="top" align="left">0.203</td>
<td valign="top" align="left">0.005</td>
<td valign="top" align="left">0.959</td>
<td valign="top" align="left">&#x2212;0.055</td>
<td valign="top" align="left">0.629</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>z<sub>SD</sub>
</italic>
</td>
<td valign="top" align="left">0.010</td>
<td valign="top" align="left">0.922</td>
<td valign="top" align="left">0.007</td>
<td valign="top" align="left">0.942</td>
<td valign="top" align="left">
<bold>0.278</bold>
</td>
<td valign="top" align="left">
<bold>0.012</bold>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,L</sub>
</italic>
</td>
<td valign="top" align="left">&#x2212;0.151</td>
<td valign="top" align="left">0.130</td>
<td valign="top" align="left">&#x2212;0.174</td>
<td valign="top" align="left">0.082</td>
<td valign="top" align="left">
<bold>&#x2212;0.316</bold>
</td>
<td valign="top" align="left">
<bold>0.004</bold>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>F<sub>D,N</sub>
</italic>
</td>
<td valign="top" align="left">&#x2212;0.115</td>
<td valign="top" align="left">0.309</td>
<td valign="top" align="left">&#x2212;0.172</td>
<td valign="top" align="left">0.127</td>
<td valign="top" align="left">
<bold>&#x2212;0.539</bold>
</td>
<td valign="top" align="left">
<bold>&lt;0.001</bold>
</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im27">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>M</mml:mi>
<mml:mi>B</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>G</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="left">
<bold>0.434</bold>
</td>
<td valign="top" align="left">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="left">
<bold>0.412</bold>
</td>
<td valign="top" align="left">
<bold>&lt;0.001</bold>
</td>
<td valign="top" align="left">0.166</td>
<td valign="top" align="left">0.142</td>
</tr>
<tr>
<td valign="top" align="left">log<sub>10</sub>(Chl-a)</td>
<td valign="top" align="left">
<bold>&#x2212;0.243</bold>
</td>
<td valign="top" align="left">
<bold>0.014</bold>
</td>
<td valign="top" align="left">
<bold>&#x2212;0.238</bold>
</td>
<td valign="top" align="left">
<bold>0.017</bold>
</td>
<td valign="top" align="left">
<bold>&#x2212;0.237</bold>
</td>
<td valign="top" align="left">
<bold>0.034</bold>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>*</sup> Bold text indicates significant correlation at the 95% level (<italic>p</italic>=&lt;0.05).</p>
</fn>
<fn>
<p>L15 = <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref>, J19 = <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref>, and V15N14 = combined methods of <xref ref-type="bibr" rid="B96">van der Woerd and Wernand (2015)</xref> and <xref ref-type="bibr" rid="B69">Novoa et&#xa0;al. (2014)</xref>.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>A statistical comparison between <italic>in-situ z<sub>SD</sub>
</italic> and the <italic>R<sub>rs</sub>
</italic>-based algorithms of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> and <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> are shown in <xref ref-type="fig" rid="f3">
<bold>Figures&#xa0;7B, C</bold>
</xref>. Within the range of <italic>in-situ z<sub>SD</sub>
</italic> collected on the AMT cruises (8.5 - 51.8&#xa0;m), both algorithms perform reasonably at retrieving <italic>z<sub>SD</sub>
</italic> from <italic>R<sub>rs</sub>
</italic>, with <italic>r</italic>
<sup>2</sup> values ranging from 0.77 to 0.78, unbiased root mean square differences (&#x394;) ranging from 4.4 to 4.5&#xa0;m, and linear regression slopes close to one. Both <italic>R<sub>rs</sub>
</italic>-based algorithms show slightly higher estimates than the <italic>in-situ z<sub>SD</sub>
</italic> data (positive biases (<italic>&#x3b4;</italic>)), but biases for the <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> algorithm are closer to zero (<italic>&#x3b4;</italic> = 2.0) than for the <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> algorithm, where there is a systematic overestimation of <italic>z<sub>SD</sub>
</italic> of around five meters (<italic>&#x3b4; =</italic> 5.4). Interestingly, there was no significant change in model performance when removing stations with overcast conditions (VCI = 1). However, it is important to recognise both models were calibrated with Hydrolight simulations using cloudless skies (<xref ref-type="bibr" rid="B46">Lee et&#xa0;al., 2002</xref>, <xref ref-type="bibr" rid="B47">2005</xref>, <xref ref-type="bibr" rid="B48">2009</xref>).</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>On the dependency of Secchi depth on solar zenith angle and wind speed</title>
<p>Differences (residuals) between the <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> and <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> algorithms, and the <italic>in-situ z<sub>SD</sub>
</italic> data, were both found to be positively correlated with <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) and inversely correlated with log<sub>10</sub>(Chl-a) (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). Residuals between the <xref ref-type="bibr" rid="B51">Lee et al. (2015)</xref> algorithm and the <italic>in-situ z<sub>SD</sub>
</italic> data were inversely correlated with solar zenith angle (<italic>&#x3b8;</italic>), but not in the case of the <xref ref-type="bibr" rid="B43">Jiang et al. (2019)</xref> algorithm (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref> and <xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>). Both algorithms incorporate a dependency on <italic>&#x3b8;</italic> in the conversion of IOPs [derived analytically from <italic>R<sub>rs</sub>
</italic> following <xref ref-type="bibr" rid="B46">Lee et al. (2002</xref>, <xref ref-type="bibr" rid="B47">2005</xref>, <xref ref-type="bibr" rid="B48">2009)</xref>] to <italic>K<sub>d</sub>
</italic>(&#x3bb;), and both algorithms subsequently derive <italic>z<sub>SD</sub>
</italic> according to</p>
<fig id="f8" position="float">
<label>Figure&#xa0;8</label>
<caption>
<p>Differences (residuals) between <italic>R<sub>rs</sub>
</italic>-derived Secchi depth (z<italic>
  <sub>SD</sub>
</italic>) and <italic>in-situ</italic> z<italic>
  <sub>SD</sub>
</italic>, using the algorithms of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> <bold>(A, C)</bold> and <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> <bold>(B</bold>, <bold>D)</bold>, plotted as a function of solar zenith angle (<italic>&#x3b8;</italic>) <bold>(A, B)</bold> and wind speed (<italic>w<sub>s</sub>
</italic>) <bold>(C, D)</bold>. Dotted line represents residuals of zero.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1111416-g008.tif"/>
</fig>
<disp-formula>
<label>(3)</label>
<mml:math display="block" id="M3">
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mn>1</mml:mn>
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
<mml:mi>min</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>K</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>&#x3bb;</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:mtext>ln</mml:mtext>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:mn>0.14</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:msubsup>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>p</mml:mi>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo>|</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:msubsup>
<mml:mi>C</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <inline-formula>
<mml:math display="inline" id="im28">
<mml:mrow>
<mml:msubsup>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>p</mml:mi>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> represents remote sensing reflectance at the corresponding wavelength to min(<italic>K<sub>d</sub>
</italic>(&#x3bb;)), <inline-formula>
<mml:math display="inline" id="im29">
<mml:mrow>
<mml:msubsup>
<mml:mi>C</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> is the threshold contrast for sighting a white Secchi disk, and <italic>&#x3c9;</italic> converts min(<italic>K<sub>d</sub>
</italic>(&#x3bb;)) to the sum of downwelling diffuse attenuation (<inline-formula>
<mml:math display="inline" id="im30">
<mml:mrow>
<mml:msubsup>
<mml:mi>K</mml:mi>
<mml:mi>d</mml:mi>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) and upwelling diffuse attenuation (<inline-formula>
<mml:math display="inline" id="im31">
<mml:mrow>
<mml:msubsup>
<mml:mi>K</mml:mi>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), in the transparent window. The <xref ref-type="bibr" rid="B51">Lee et al. (2015)</xref> algorithm fixes <italic>&#x3c9;</italic> at 2.5, whereas the <xref ref-type="bibr" rid="B43">Jiang et al. (2019)</xref>algorithm has a variable <italic>&#x3c9;</italic>, itself dependent on <italic>&#x3b8;</italic> according to</p>
<disp-formula>
<label>(4)</label>
<mml:math display="block" id="M4">
<mml:mrow>
<mml:mi>&#x3c9;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>+</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1.04</mml:mn>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>+</mml:mo>
<mml:mn>5.4</mml:mn>
<mml:mi>u</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mn>0.5</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo stretchy="false">/</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>s</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>&#x3b8;</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>n</mml:mi>
<mml:mi>w</mml:mi>
</mml:msub>
<mml:msup>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mn>0.5</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula><p>where <italic>u</italic> is the ratio of the backscattering coefficient to the sum of absorption and backscattering coefficients (derived from <italic>R<sub>rs</sub>
</italic> following <xref ref-type="bibr" rid="B46">Lee et&#xa0;al. (2002</xref>; <xref ref-type="bibr" rid="B47">2005</xref>; <xref ref-type="bibr" rid="B48">2009)</xref>), and <italic>n<sub>w</sub>
</italic> is the refractive index of water (1.34). For the same backscattering and absorption coefficient, as <italic>&#x3b8;</italic> increases, <italic>K<sub>d</sub>
</italic>(&#x3bb;) increases in model of <xref ref-type="bibr" rid="B47">Lee et&#xa0;al. (2005)</xref> (used in both <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> and <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> models), which subsequently decreases <italic>z<sub>SD</sub>
</italic> in Eq. 3. However, in the <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> algorithm, as <italic>&#x3b8;</italic> increases, <italic>&#x3c9;</italic> decreases (Eq. 4), which counterbalances the increase in (<italic>K<sub>d</sub>
</italic>(&#x3bb;)) with <italic>&#x3b8;</italic>. The resulting effect is that <italic>z<sub>SD</sub>
</italic> estimated using the <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> algorithm is less dependent on <italic>&#x3b8;</italic> than for the <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> model.</p>
<p>Differences (residuals) between the <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> and <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> algorithms, and the <italic>in-situ z<sub>SD</sub>
</italic> data, were also found to be positively correlated with wind speed (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref> and <xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>). At very low wind speed (&lt;3 ms<sup>&#x2212;1</sup>), there is better agreement between models and <italic>in-situ</italic> data, with <italic>&#x3b4;</italic> closer to zero (<italic>&#x3b4;</italic> = &#x2212;1.03 for <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> and <italic>&#x3b4;</italic> = 2.79 for <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref>). These biases increased with increasing wind speed (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>) Neither models incorporate a dependency of <italic>z<sub>SD</sub>
</italic> on wind speed, but our results are broadly consistent with theory of <xref ref-type="bibr" rid="B78">Preisendorfer (1986)</xref> that assumes an increase in wind speed causes a reduction in the apparent contrast of the disk at the surface, and a subsequent reduction in <italic>z<sub>SD</sub>
</italic>.</p>
<p>Though the <xref ref-type="bibr" rid="B78">Preisendorfer (1986)</xref> and <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref> Secchi disk theory define contrast differently, the <xref ref-type="bibr" rid="B78">Preisendorfer (1986)</xref> approach could be used to introduce some relationship between contrast and wind speed in the theory of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref>. The inherent contrast (<italic>C</italic>
<sub>0</sub>) is defined not as a relative difference in irradiance reflectance between the disk and the surrounding water (as in <xref ref-type="bibr" rid="B78">Preisendorfer, 1986</xref>), but as an absolute difference between the radiance reflectance of the disk (<italic>r</italic>
<sub>0</sub>) and the surrounding water (<inline-formula>
<mml:math display="inline" id="im32">
<mml:mrow>
<mml:msub>
<mml:mi>r</mml:mi>
<mml:mi>&#x221e;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>), such that</p>
<disp-formula>
<label>(5)</label>
<mml:math display="block" id="M5">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>r</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>r</mml:mi>
<mml:mi>&#x221e;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>|</mml:mo>
</mml:mrow>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>The derived theory states that the contrast is modified as the distance (<italic>z</italic>) from the observer to the disk increases, such that</p>
<disp-formula>
<label>(6)</label>
<mml:math display="block" id="M6">
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>z</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
<mml:mi>exp</mml:mi>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo stretchy="false">(</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>K</mml:mi>
<mml:mi>d</mml:mi>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:msubsup>
<mml:mi>K</mml:mi>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>z</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Following <xref ref-type="bibr" rid="B78">Preisendorfer (1986)</xref>, a contrast reduction factor (<inline-formula>
<mml:math display="inline" id="im33">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>) could be introduced, such that Eq. 6 becomes</p>
<disp-formula>
<label>(7)</label>
<mml:math display="block" id="M7">
<mml:mrow>
<mml:mi>C</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>z</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
<mml:mi>exp</mml:mi>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo stretchy="false">(</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>K</mml:mi>
<mml:mi>d</mml:mi>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:msubsup>
<mml:mi>K</mml:mi>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>z</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>If we make the assumption that <inline-formula>
<mml:math display="inline" id="im34">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> is controlled by wind speed (<italic>w<sub>s</sub>
</italic>), acknowledging that other factors (which may or may not covary with <italic>w<sub>s</sub>
</italic>) are likely to impact <inline-formula>
<mml:math display="inline" id="im35">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>, we could relate <inline-formula>
<mml:math display="inline" id="im36">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> to <italic>w<sub>s</sub>
</italic> empirically. To do that, we define <italic>x</italic>(<italic>z</italic>)=<italic>C</italic>
<sub>0</sub>/<italic>C</italic>(<italic>z</italic>), and for <italic>z=z<sub>SD</sub>
</italic>, it follows that <italic>C</italic>(<italic>z<sub>SD</sub>
</italic>)=0.013. Then, as the measurement is made from above the surface, it has to include another contrast reduction factor due to surface reflection effects, leading to <inline-formula>
<mml:math display="inline" id="im37">
<mml:mrow>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:mn>0.14</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mtext mathvariant="italic">rs</mml:mtext>
</mml:msub>
</mml:mrow>
<mml:mo>|</mml:mo>
</mml:mrow>
<mml:mo stretchy="false">/</mml:mo>
<mml:mn>0.013</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> (see Section 4 of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al., 2015</xref>). To have an operational expression to solve for <inline-formula>
<mml:math display="inline" id="im38">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>, we make the ratio of Secchi depth with (<italic>z<sub>SD,ws</sub>
</italic>) and without (<italic>z<sub>SD,ws</sub>
</italic>
<sub>=0</sub>) wind, such that</p>
<disp-formula>
<label>(8)</label>
<mml:math display="block" id="M8">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mtext>ln</mml:mtext>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mtext>ln</mml:mtext>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Rearranging the equation following some algebra, we obtain</p>
<disp-formula>
<label>(9)</label>
<mml:math display="block" id="M9">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>and derive <inline-formula>
<mml:math display="inline" id="im39">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> by making the assumption <italic>z<sub>SD,ws</sub>
</italic>
<sub>=0</sub> is equal to the <xref ref-type="bibr" rid="B43">Jiang et&#xa0;al. (2019)</xref> algorithm output, and <italic>z<sub>SD,ws</sub>
</italic> represents the <italic>in-situ</italic> data. Next we model <inline-formula>
<mml:math display="inline" id="im40">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> as a function of wind speed (<italic>w<sub>s</sub>
</italic>) and <italic>z<sub>SD,ws</sub>
</italic>
<sub>=0</sub> (<xref ref-type="bibr" rid="B43">Jiang 531 et&#xa0;al. (2019)</xref> algorithm), according to</p>
<disp-formula>
<label>(10)</label>
<mml:math display="block" id="M10">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
<mml:mi>exp</mml:mi>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo stretchy="false">[</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>with the expression chosen carefully to follow the observed trend in which wind explains most of the variation, but it is modulated by <italic>z<sub>SD,ws</sub>
</italic>
<sub>=0</sub>. Fitting of Eq. 10 to the data resulted in <inline-formula>
<mml:math display="inline" id="im41">
<mml:mrow>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mn>0.901</mml:mn>
<mml:mrow><mml:mtext>&#xa0;</mml:mtext><mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>0.805</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.998</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula>
<mml:math display="inline" id="im42">
<mml:mrow>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mn>0.022</mml:mn>
<mml:mrow><mml:mtext>&#xa0;</mml:mtext><mml:mo>(</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.007</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.051</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula>
<mml:math display="inline" id="im43">
<mml:mrow>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mn>0.03</mml:mn>
<mml:mrow><mml:mtext>&#xa0;</mml:mtext><mml:mo>(</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.045</mml:mn>
<mml:mo>&#x2194;</mml:mo>
<mml:mn>0.106</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>. Once <inline-formula>
<mml:math display="inline" id="im44">
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> is known, <italic>z<sub>SD,ws</sub>
</italic> can be estimated from</p>
<disp-formula>
<label>(11)</label>
<mml:math display="block" id="M11">
<mml:mrow>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mtext>ln</mml:mtext>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mover>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mn>0</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mi>-</mml:mi>
</mml:mover>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mtext>ln</mml:mtext>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>x</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Using the modelled <italic>z<sub>SD,ws</sub>
</italic> (<xref ref-type="bibr" rid="B43">Jiang et&#xa0;al., 2019</xref>) removes the significant positive correlation between wind speed and model residuals (<italic>r</italic>=&#x2212;0.135, <italic>p</italic>=0.179) apparent in original (<xref ref-type="bibr" rid="B43">Jiang et&#xa0;al., 2019</xref>) algorithm (<italic>z<sub>SD,ws=</sub>
</italic>
<sub>0</sub>, <xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8D</bold>
</xref>). Additional datasets are need to independently validate this approach, but it certainly offers a way to incorporate the influence of wind speed into the Secchi depth theory of <xref ref-type="bibr" rid="B51">Lee et&#xa0;al. (2015)</xref>, and could be useful for standardising <italic>in-situ z<sub>SD</sub>
</italic> data to a common wind speed.
</p></sec>
<sec id="s3_5">
<label>3.5</label>
<title>Experiences and recommendations from collecting optical measurements using historical techniques on AMT</title>
<p>Our experience of collecting Secchi depth and Forel-Ule colour data on the Atlantic Meridional Transect revealed a number of insights. With the exception of a few sceptical scientists on-board the ship, there were many (scientists and members of the ship&#x2019;s crew) that loved visually inspecting the colour and clarity of the water using the Secchi disk and Forel-Ule colour scales (see acknowledgements). It was the only time of the day where these participants had the opportunity to visually connect and interact with the ocean. The AMT transect was the perfect cruise to do this, as it transects through a ranges of conditions, with the clarity and colour of the water changing (sometimes rapidly) over the duration of the cruise. Visually inspecting the water also resulted in an increased number of sightings of marine wildlife and oceanic phenomena, including (and to name a few) observations of dolphins, sharks, whales, dolphinfish, rays, penguins, squid, turtles, icebergs, all manner of seabirds, as well as some of the more negative features (e.g., marine litter). For some, this had a positive influence on mental health, important to consider when on-board a research vessel for an extended period of time. Considering the nature of the measurement of Secchi depth and Forel-Ule colour, in that the observer is intrinsically part of the measurement process, it was a useful activity for teaching the concepts of ocean colour and clarity to non-scientists, and scientists working on other aspects of oceanography, on the AMT cruises.</p>
<p>Despite these positives, it was evident that measuring the Secchi depth in oligotrophic waters is challenging. After unsuccessfully attempting to deploy a Secchi disk using the traditional technique (rope and weighted Secchi disk), hindered by the disk drifting quickly away from the vessel (which was kept stationary), we followed the recommendations of the late Marcel Wernand, who in his 2010 paper states <italic>&#x201c;&#x2026;the author recommends a reintroduction of the Secchi disc to expand the historical Secchi depth database to facilitate climate change research. One option is to mount a Secchi disc on an instrumental or CTD frame&#x2026;&#x201d;</italic> (<xref ref-type="bibr" rid="B100">Wernand, 2010</xref>, p5). Once the disk was mounted on the optics rig (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>) it became feasible to do the measurements, as part of routine data collection.</p>
<p>A major challenge with conducting Secchi depth measurements in oligotrophic waters, is the fact that the disk disappears at a depth far greater than in mesotrophic and eutrophic waters. The angular subtense of the disk&#x2019;s radius (<inline-formula>
<mml:math display="inline" id="im45">
<mml:mrow>
<mml:mtext>&#x3a6;</mml:mtext>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>r</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">/</mml:mo>
<mml:msub>
<mml:mi>z</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, <italic>r<sub>SD</sub>
</italic> is the disk&#x2019;s radius, the first order approximation of the MacLaurin expansion of the arctan function), for a 30&#xa0;cm diameter disk at a <italic>z<sub>SD</sub>
</italic> of 50&#xa0;m, is 0.003. To put this into perspective (and something that could easily be tested in inland water), the target viewed is equivalent to lowering a 1&#xa0;cm diameter disk to 1.7&#xa0;m. One solution could be to increase the disk size for oligotrophic waters. Although a 30&#xa0;cm diameter disk is standard for measuring the Secchi depth in the ocean, Angelo Secchi himself used disks as big as 2.5&#xa0;m in diameter in his early work (<xref ref-type="bibr" rid="B73">Pitarch et&#xa0;al., 2021</xref>), and others have modified the disk size to be smaller in more turbid waters (e.g., <xref ref-type="bibr" rid="B9">Brewin et&#xa0;al., 2019a</xref>). However, the exact impact of disk size on Secchi depth is still a matter of research (<xref ref-type="bibr" rid="B40">Hou et&#xa0;al., 2007</xref>). Another possible artefact of a very low angular subtense (<inline-formula>
<mml:math display="inline" id="im46">
<mml:mtext>&#x3a6;</mml:mtext>
</mml:math>
</inline-formula>) in oligotrophic waters, could be an increasing impact of environmental factors on the detection threshold of the human eye (in air) seeing the disk, since the target is so small. Additionally, there may be other optical effects that occur, that are not currently accounted for in the theory. For example, with a very small target in a moving ocean, there may be some kind of adjacency effect, caused by the spectrum near the edge of the disk being a mixture of reflectance of the disk and the infinitely deep waters.</p>
<p>The dataset collected on AMT is freely available (<xref ref-type="bibr" rid="B16">Brewin et al., 2023</xref>), courtesy of the British Oceanographic Data Centre (BODC), for use in future research on the topic. In this paper, we have compared and evaluated broad relationships between historic and modern optical techniques for monitoring phytoplankton biomass. Future work could use these data to examine in greater detail the influence of varying concentrations of different optically-active constituents on the relationships between Secchi depth, Forel-Ule colour, <italic>R<sub>rs</sub>
</italic>, and Chl-a. For example, variations in coloured dissolved organic matter (CDOM) will have an impact on water colour, and consequently the relationships between bulk variables (<xref ref-type="bibr" rid="B97">Van der Woerd and Wernand, 2018</xref>). For some AMT cruises, underway CDOM absorption data (<xref ref-type="bibr" rid="B25">Dall&#x2019;Olmo et&#xa0;al., 2017</xref>), as well as underway and profile particulate absorption and scattering measurements (<xref ref-type="bibr" rid="B24">Dall&#x2019;Olmo et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B12">Brewin et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B93">Tilstone et&#xa0;al., 2021</xref>), have been collected, and could be useful for studying relationships between Secchi depth, Forel-Ule colour, <italic>R<sub>rs</sub>
</italic>, and Chl-a.</p>
<p>Measuring PAR on a profiling package and the Secchi depth from a large oceanographic vessel could lead to cases of ship shadow. For PAR, this was somewhat minimised by only using profiles where depth and log(PAR) were tightly correlated and (where possible) deploying the profiling package on the sunny side of the vessel. Our <italic>K<sub>d</sub>
</italic> values for oligotrophic waters (varying between 0.02 &#x2013; 0.08) are consistent with values from satellite data in the region (e.g., <xref ref-type="bibr" rid="B91">Son and Wang, 2015</xref>) and consistent with BGC-Argo float data (see <xref ref-type="bibr" rid="B27">Demeaux and Boss (2022)</xref>). AMT <italic>K<sub>d</sub>
</italic> data also agreed well with <italic>K<sub>d</sub>
</italic> estimates from a BGC-Argo float WMO:3902121 in the South Atlantic gyre, (results not shown).</p>
<p>Another factor that may influence relationships between Secchi depth, Forel-Ule colour, <italic>R<sub>rs</sub>
</italic>, and Chl-a, are shifts in the community composition of phytoplankton. It is well know that the chl-specific absorption and backscattering coefficients vary with phytoplankton community composition (e.g., <xref ref-type="bibr" rid="B23">Ciotti et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B88">Sathyendranath et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B44">Kostadinov et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B14">Brewin et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B28">Devred et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B13">Brewin et&#xa0;al., 2012a</xref>; <xref ref-type="bibr" rid="B10">Brewin et&#xa0;al., 2019b</xref>). Although the median ratio of Secchi-depth to mixed-layer depth (computed using temperature criterion of <xref ref-type="bibr" rid="B26">de Boyer Mont&#xe9;gut et&#xa0;al. (2004)</xref>) was found to be 0.49 (standard deviation 0.44), suggesting on average the mixed-layer depth was twice that of the Secchi depth, there were a few cases where the Secchi depth was shallower than the mixed-layer depth. Vertical variability in Chl-a and phytoplankton community structure in the region (<xref ref-type="bibr" rid="B63">Mojica et&#xa0;al., 2015</xref>), and within the Secchi depth layer, may exist (e.g., in very clear waters, with very shallow mixed-layers) which may complicate relationships between Secchi depth, Forel-Ule colour, <italic>R<sub>rs</sub>
</italic>, and Chl-a.</p>
<p>We chose to use surface Chl-a, rather than depth-averaged Chl-a within the Secchi depth layer, in our analysis, as it has been recommended by the community to use surface Chl-a when developing surface optical models (<xref ref-type="bibr" rid="B86">Sathyendranath et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B52">Lee et&#xa0;al., 2020</xref>), and it allowed us to compare relationships in our dataset with earlier algorithms (<xref ref-type="bibr" rid="B8">Boyce et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B50">Lee et&#xa0;al., 2018c</xref>). However, datasets on vertical variations in Chl-a and community composition (e.g. through flow cytometry and HPLC analysis) have been collected on AMT cruises, and could be useful for studying impact of vertical variability in water constituents on proposed models. Future efforts in collecting vertically-resolved inherent optical properties, alongside Secchi depth and FU measurements, would help further. Considering issues with direct observations of Forel-Ule colour of infinite waters not resolving subtle variations in low Chl-a in oligotrophic waters, we recommend measuring Forel-Ule colour in oligotrophic waters using the colour of the Secchi disk at 1/2<italic>z<sub>SD</sub>
</italic>.</p>
</sec>
</sec>
<sec id="s4">
<label>4</label>
<title>Summary</title>
<p>On four AMT cruises (23, 25, 26 and 28), we collected a dataset of both modern (radiometric) and traditional (Secchi depth and Forel-Ule colour) measurements of ocean clarity and colour, together with <italic>in-situ</italic> measurements of Chl-a, with the aim to evaluate relationships between historic and modern methods for monitoring phytoplankton biomass, and evaluate satellite ocean colour remote-sensing algorithms, two key goals of the AMT programme. Historic and modern optical measurements were in good agreement and consistent with current understanding, with the Secchi depth inversely correlated to the Forel-Ule colour, beam and diffuse attenuation, and positively correlated to the euphotic depth and <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G). The relationship between Secchi depth and Forel-Ule on AMT was also in good agreement with historical data, but only when using data of the Forel-Ule colour of infinite water (estimated using <xref ref-type="bibr" rid="B71">Pitarch (2017)</xref>), rather than the Forel-Ule colour of the Secchi disk at half the Secchi depth. <italic>R<sub>rs</sub>
</italic>(MB)/<italic>R<sub>rs</sub>
</italic>(G) explained the highest amount of variance in Chl-a (89%), closely followed by the Secchi depth (85%) and the Forel-Ule colour (71-81%, depending on scale used). Overall, algorithms that predict Chl-a from these optical proxies were found to perform well, with some systematic differences. Algorithms that estimate Forel-Ule and Secchi depth from remote sensing reflectance were found to be in good agreement with the <italic>in-situ</italic> data, albeit with a positive bias (2.0 - 5.4&#xa0;m, ~8-22%) in Secchi depth, and differences in performance depending on which Forel-Ule scale and method were used (infinite colour or colour of water above disk at 1/2<italic>z<sub>SD</sub>
</italic>). The impact of different environmental variables on relationships between optical proxies was investigated, and varied depending on the optical proxies analysed. We found wind speed to impact the estimation of <italic>z<sub>SD</sub>
</italic>, and proposed a path forward to include the effect of wind in current Secchi depth theory, based on the classical work of <xref ref-type="bibr" rid="B78">Preisendorfer (1986)</xref>. We highlight some of the benefits and challenges in collecting optical measurements using traditional methods on AMT, and highlight future directions for research. Our dataset is made publicly available to support the research community (see <xref ref-type="bibr" rid="B16">Brewin et al., 2023</xref>).</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The dataset used for this study is openly available through the British Oceanographic Data Centre (see <uri xlink:href="https://doi.org/10.5285/f3198e10-faf3-1525-e053-6c86abc0d2f6">https://doi.org/10.5285/f3198e10-faf3-1525-e053-6c86abc0d2f6</uri>).</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>RB and GD organised and participated in the collection of all the Secchi disk and Forel-Ule colour data. RB, GD, and GT organised and participated in the collection of all modern optical datasets used (e.g., radiometry). RB wrote an initial plan for the paper with input from GD, JP, and HW. JL and XS contributed to data processing and figure production. RB and JP synthesised the data, ran the analysis and prepared the figures. RB wrote the first version of the manuscript, with input from JP. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by grants from the European Space Agency (ESA), including the Changing Earth Science Network initiative funded by the STSE programme (DECIPHER project), AMT4SentinelFRM (ESRIN/RFQ/3-14457/16/I-BG) and AMT4OceanSatFlux (4000125730/18/NL/FF/gp). Additional support from the UK National Centre for Earth Observation is acknowledged. The work was supported by UK Natural Environment Research Council (NERC) National Capability funding for AMT to Plymouth Marine Laboratory. AMT is funded by the NERC through its National Capability Long-term Single Centre Science Programme, Climate Linked Atlantic Sector Science (grant number NE/R015953/1). This study contributes to the international IMBeR project and is contribution number 384 of the AMT programme. RB is funded by a UKRI Future Leader Fellowship (MR/V022792/1).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We thank Marcel Wernand for providing Forel-Ule scale used on AMT25, AMT26 and AMT28, and for his support for collecting Forel-Ule and Secchi depth data on AMT. We are indebted to the all the scientists, the captain&#x2019;s and crew of the RRS <italic>James Clark Ross</italic>, on AMT23, AMT25, AMT26, and AMT28, who helped make this work happen. Especially those who were kind enough to come out on deck at the noon station, look at the ocean, and help us collect the Forel-Ule and Secchi depth data, specific thanks goes to: Arwen Bargery, Carolina Beltran, Kimberley Bird, Ian Brown, Catherine Burd, Priscilla Lange, Phyllis Lam, Ankita Misra, Catherine Mitchell, M&#xf3;nica Moniz, Clifford Mullaney, Francesco Nencioli, John O&#x2019;Duffy, Emanuele Organelli, Paul Provost, Rafael Rasse, Andy Rees, Nick Rundle, Bita Sabbaghzadeh, Chata Seguro, Charlotte Smith, Tim Smyth, Madeline Steer, Glen Tarran, Robyn Tuerena, Natalie Wager, and Simon Wright. We thank Tom Jackson for help in data transfer and Afonso Ferreira and Andreia Tracana for help filtering water for HPLC analysis on AMT28. We thank Arwen Bargery, Priscilla Lange and Phyllis Lam, for use of photos in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>. We thank all those that contributed to the CalCOFI and NODC datasets.</p>
</ack>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
<p>The handling editor VB declared a past co-authorship with the authors RB and XS.</p>
</sec>
<sec id="s9" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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