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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.883678</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Study on the Individual Coloring Mechanism of Iridescent Cells in the Mantle of the Boring Giant Clam, <italic>Tridacna crocea</italic>
</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Yunqing</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1378689"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Yinyin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1462837"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wei</surname>
<given-names>Jinkuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1765545"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shi</surname>
<given-names>Gongpengyang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1378640"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liao</surname>
<given-names>Qingliang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1378641"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Guo</surname>
<given-names>Shuming</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1764560"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Zihua</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1196501"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Jun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/418924"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qin</surname>
<given-names>Yanping</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/605145"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname>
<given-names>Haitao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1363309"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yu</surname>
<given-names>Ziniu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/696109"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhang</surname>
<given-names>Yuehuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/521964"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Science</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>University of Chinese Academy of Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Marine Science and Engineering Guangdong Laboratory (Guangzhou)</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Hainan Provincial Key Laboratory of Tropical Marine Biology Technology, Sanya Institute of Oceanology Chinese Academy of Sciences, Tropical Marine Biological Research Station in Hainan, Chinese Academy of Sciences</institution>, <addr-line>Sanya</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Xiaotong Wang, Ludong University, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Xizhi Huang, Johannes Gutenberg University Mainz, Germany; Chunsheng Liu, Hainan University, China; Richard Braley, Aquasearch, Australia</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Ziniu Yu, <email xlink:href="mailto:carlzyu@scsio.ac.cn">carlzyu@scsio.ac.cn</email>; Yuehuan Zhang, <email xlink:href="mailto:yhzhang@scsio.ac.cn">yhzhang@scsio.ac.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Aquatic Physiology, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>25</day>
<month>04</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>883678</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>03</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Li, Zhou, Wei, Shi, Liao, Guo, Zhou, Li, Qin, Ma, Yu and Zhang</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Li, Zhou, Wei, Shi, Liao, Guo, Zhou, Li, Qin, Ma, Yu and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Giant clams are marine bivalves that inhabit Indo-Pacific coral reefs. The boring giant clam, <italic>Tridacna crocea</italic>, exhibits bright and conspicuous mantle coloration based on the specialized cells (iridocytes) that generate structural colors. In order to illustrate the coloring mechanism of individual iridocytes, the reflection spectra curve of iridocytes was obtained by a micro-hyperspectral imager. TEM images were obtained to show the inner nanostructures of iridocytes. FDTD simulation was conducted to analyze the relationship between the color of iridocytes and the unique lamellar structure. We found that the laminae in the regular arrangement within cells govern the coloration of individual iridocytes. With the gradual increase of lamellar thickness and spacing, the color of the structure varies from bright violet to orange-red, forming a full visible spectrum. This study provides a new understanding of the various colors produced by individual iridocytes.</p>
</abstract>
<kwd-group>
<kwd>
<italic>Tridacna crocea</italic>
</kwd>
<kwd>giant clams</kwd>
<kwd>iridocytes</kwd>
<kwd>mantle color</kwd>
<kwd>FDTD simulation</kwd>
<kwd>Bragg stacks</kwd>
</kwd-group>
<contract-num rid="cn001">2020YFD0901102, 2018YFD0901400</contract-num>
<contract-sponsor id="cn001">National Key Research and Development Program of China<named-content content-type="fundref-id">10.13039/501100012166</named-content>
</contract-sponsor>
<counts>
<fig-count count="5"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="47"/>
<page-count count="9"/>
<word-count count="3563"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Creatures in nature display a variety of colors (<xref ref-type="bibr" rid="B3">Caro and Mallarino, 2020</xref>; <xref ref-type="bibr" rid="B25">Kjernsmo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B31">Mello et&#xa0;al., 2021</xref>). The biology of color is an emerging branch of science. It focuses on the mechanisms of color formation, color inheritance, dynamic changes of color, and color interactions with other sensory modalities. It runs through diverse scientific fields such as evolutionary biology (<xref ref-type="bibr" rid="B43">Wallbank et&#xa0;al., 2016</xref>), behavioral ecology (<xref ref-type="bibr" rid="B6">de Abreu et&#xa0;al., 2021</xref>), optical physics (<xref ref-type="bibr" rid="B7">De Tommasi et&#xa0;al., 2021</xref>), bionics (<xref ref-type="bibr" rid="B10">Dou et&#xa0;al., 2021</xref>), visual physiology (<xref ref-type="bibr" rid="B35">Sandkam et&#xa0;al., 2016</xref>) and genetics (<xref ref-type="bibr" rid="B21">Joron et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B18">Hohenlohe, 2014</xref>; <xref ref-type="bibr" rid="B32">Orteu and Jiggins, 2020</xref>). This subject has the characteristics of multi-level, interdisciplinary, and comprehensive knowledge (<xref ref-type="bibr" rid="B5">Cuthill et&#xa0;al., 2017</xref>).</p>
<p>Biological coloration can be divided into pigment coloration and structural coloration (<xref ref-type="bibr" rid="B38">Shawkey and D'Alba, 2017</xref>). The former derives from a class of substances inherently determined by pigment synthesis genes. Pigment molecules, such as pterins (<xref ref-type="bibr" rid="B2">Andrade and Carneiro, 2021</xref>), melanin (<xref ref-type="bibr" rid="B8">Delgado-Vargas et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B1">Almeida-Paes et&#xa0;al., 2017</xref>), and carotenoids (<xref ref-type="bibr" rid="B30">Lopes et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B17">Heriyanto et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B41">Tian et&#xa0;al., 2022</xref>), selectively absorb, transmit, and reflect the light of specific wavelengths, thus presenting colors. Structural coloration is usually generated by the interaction between light and biological nanostructures. Thin-film interference, multilayer interference, light scattering, diffraction grating effect, and photonic crystals are considered to be the fundamental optical processes related to structural colors (<xref ref-type="bibr" rid="B24">Kinoshita and Yoshioka, 2005</xref>; <xref ref-type="bibr" rid="B11">Doucet and Meadows, 2009</xref>; <xref ref-type="bibr" rid="B36">Saranathan and Finet, 2021</xref>).</p>
<p>A considerable amount of animals can produce structural coloration, and even use nanoscale structures to manipulate light for specific purposes. Many butterflies exhibit the vivid structural coloration of their wings, which is produced by complex three-dimensional biophotonic nanostructures (<xref ref-type="bibr" rid="B37">Saranathan et&#xa0;al., 2010</xref>). Chameleons are well known for their adjustable appearance color adapted to the environment (<xref ref-type="bibr" rid="B37">Saranathan et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B40">Teyssier et&#xa0;al., 2015</xref>). The neon tetra has a remarkable ability to change the structural color of its lateral stripes from blue-green in the daytime to indigo at night (<xref ref-type="bibr" rid="B15">Gur et&#xa0;al., 2015</xref>). Cephalopods, especially squids, can strategically and rapidly alter and reflect in their skin to show different coloration in social interaction and behavior (<xref ref-type="bibr" rid="B39">Tao et&#xa0;al., 2010</xref>).</p>
<p>Giant clams (Bivalvia: Cardiidae: Tridacninae) are also characterized by a high diversity of mantle color with brilliant iridescence. Initially, the structural coloration of giant clams was thought to be determined by the species richness and cell abundance of symbiotic microalgae, zooxanthellae. However, with the progress of research, the iridescent cells in the mantle called iridocytes rather than zooxanthellae are supposed to be the cause of intense coloration (<xref ref-type="bibr" rid="B22">Kamishima, 1990</xref>). More specifically, according to the red-green-blue (RGB) pixel strategy (<xref ref-type="bibr" rid="B13">Ghoshal et&#xa0;al., 2016b</xref>), iridocytes have been shown to generate vibrant colors by backscattering (<xref ref-type="bibr" rid="B12">Ghoshal et&#xa0;al., 2016a</xref>). The boring giant clam, <italic>T. crocea</italic> strongly expresses mantle color polymorphism with iridocytes in specific colors such as blue, green, yellow, and orange-red. Based on the color type of iridocytes, two strains of <italic>T. crocea</italic> (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1A, B</bold>
</xref>), blue strain (blue iridocytes as major components), and yellow-green strain (mainly found yellow and green iridocytes) were established (<xref ref-type="bibr" rid="B23">Kawaguti, 1966</xref>; <xref ref-type="bibr" rid="B46">Zhou et&#xa0;al., 2021</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>
<italic>T. crocea</italic> specimens from yellow-green strain <bold>(A)</bold> and blue strain <bold>(B)</bold> were chosen and temporarily kept on the coral living stones in an aquarium. <bold>(C)</bold> Dissected section of a blue specimen. The tissue adjacent to the edge of the shell appears blue. <bold>(D)</bold> The outer surface of the mantle. The regions that display blue shining are iridocyte clusters, while the brown regions in the deeper layer are zooxanthellae.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g001.tif"/>
</fig>
<p>However, an outstanding question about how an individual iridocytes produces structural coloring is unknown. Here we used tissue sections and transmission electron microscopy (TEM) to investigate the mechanism of coloration originated from individual iridocytes. Furthermore, we also used the finite difference time domain (FDTD) method to develop a model to simulate the optical behavior of iridocytes at the nanoscale.</p>
</sec>
<sec id="s2">
<title>Material and Methods</title>
<p>Boring giant clam, <italic>T. crocea</italic> specimens were obtained from Hainan Tropical Marine Biology Research Station, Chinese Academy of Sciences, Sanya, China (18&#xb0;12&#x2019;42&#x2019;&#x2019; N, 109&#xb0;28&#x2019;26&#x2019;&#x2019; E), and maintained under the following conditions: artificial seawater at 33 psu, temperature ranged from 24&#xb0;C to 26&#xb0;C, with natural light.</p>
<p>To analyze the iridocytes on the outer surface of <italic>T. crocea</italic>, siphonal mantle tissues with bright colors were extracted (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1C, D</bold>
</xref>). The micro-hyperspectral imager was set at reflection mode, with the emission light source turning on and the balance of white and dark adjusting to conduct the observation and analysis. The original reflection spectrum data of a single iridocyte were analyzed, and then the spectral curve was drawn by ENVI software.</p>
<p>Tissues with a size of 1mm<sup>3</sup> were prefixed in 2.5% precooled glutaraldehyde. After washing with 0.1 M phosphate buffer (pH=7.4), the samples were transferred to 1% osmium tetroxide (pH=7.4) for further fixation. After ethanol dehydration, the fixed mantle tissue was embedded with Spurr&#x2019;s resin. Finally, all sections were stained with 2% uranium acetate saturated alcohol solution and 2.6% lead citrate, and then the images were observed and photographed on HITACHI TEM system.</p>
<p>Since we assumed that the various structural coloration is due to interaction and the common effect of the high index lamellar and the low index spacing (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>), electromagnetic simulation was conducted for a more detailed study. FDTD is an algorithm strategy that uses a finite element method to simulate the distribution of electric field and magnetic field in the transmission process of the electromagnetic field in materials. FDTD method has high accuracy in the analysis of microstructure size similar to or smaller than a light wave. Here, Lumerical&#x2019;s FDTD simulations were performed to reveal the optical behavior of iridocytes. We only considered the effect of Bragg stacks on the color formation and created a simplified structure of iridocytes, modeling the cells as two-dimensional cross-sections, with a constant refractive index of lamellae and variable thickness of lamellae and cisterns. For built-in primitives, they represented alternating dark and light regions of high index lamellar (n=1.44) and low index spacing (n=1.35), respectively (<xref ref-type="bibr" rid="B12">Ghoshal et&#xa0;al., 2016a</xref>). The outer edge of the 20&#xd7;20 nm<sup>2</sup> simulation region was set as implementing perfectly matched layers, with absorbing boundary conditions. To emulate the sunlight sources, a plane wave with a broadband spectrum ranging from 300 to 800 nm was perpendicular to the plane of Bragg layers and then vibrated in x or z polarized directions synchronically (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2C&#x2013;F</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>
<bold>(A)</bold>, Diagram of individual iridocytes in <italic>T. crocea</italic>. <bold>(B)</bold>, Close-up image of lamellae structure in <bold>(A)</bold> The brown rectangles toward the same direction represent the lamellae with a high refractive index, and the light pink sections represent the spacings with a low refractive index. The three-dimension image <bold>(F)</bold> and the three views <bold>(C-E)</bold> of the simulation model created by the FDTD method. Only considering the interference of lamellar structure on iridocytes&#x2019; coloration, the structure within the cells is simplified into a cylindrical shape, as shown in <bold>(F)</bold> Dark blue and light blue areas represent the high and low refractive index parts respectively. The orange and yellow frames in <bold>(C)</bold> indicate that the boundary conditions are perfectly matched layers.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g002.tif"/>
</fig>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Nanostructure of Iridocytes</title>
<p>In order to verify the consistency between the observed colors and the reflection spectrum of individual iridocytes, we targeted blue, green, yellow as well as orange-red bright cells on the shallow mantle of all specimens.</p>
<p>When the observed color of iridocytes was blue, the reflectance peak maximum was at &#x223c;480 nm. In addition, the peaks of spectra curves of green, yellow, and orange-red iridescent cells were located at &#x223c;570 nm, &#x223c;590 nm, and &#x223c;620 nm, respectively (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref> column 2). As expected, the peaks result in the observed colors of individual cells. In the visible spectrum, the blue range is 440 to 480 nm, the green range is 500 to 570 nm, the yellow range is 580 to 590 nm, and the orange-red range is 600 to 700 nm. Such structural coloration is an optical process produced by the submicroscopic structure of organisms, rather than related to pigmentation. That indicates that some changes in structure at nanoscale within iridocytes should be accountable for the various structural colors displayed in the mantle.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Detected reflectance and nanoscale structure of individual iridocytes: <bold>(A)</bold>, Blue iridocytes. <bold>(B)</bold>, Green iridocytes. <bold>(C)</bold>, Yellow iridocytes. <bold>(D)</bold>, Orange-red iridocytes. Column 1 (left) shows single iridocyte or iridophores of the specific color under the light microscope (indicated by the green circles). Measured reflectance spectra of various colors of iridocytes are shown in column 2 (middle). Every normalized curve represents each iridocyte and three normalized curves mean three replicates. TEM observation in column 3 (right) shows the lamellae in a single iridocyte which contributes to various structural colors. The thickness of lamellae and the spacing among them were measured and calculated to investigate differently colored specimens.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g003.tif"/>
</fig>
<p>The TEM images in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref> column 3 show the inner structure of iridocytes at the nanoscale. As mentioned in previous studies, most iridescent cells are occupied by stacked flattened lamellae, which are arranged in a uniform orientation (<xref ref-type="bibr" rid="B22">Kamishima, 1990</xref>; <xref ref-type="bibr" rid="B14">Griffiths et&#xa0;al., 1992</xref>; <xref ref-type="bibr" rid="B23">Kawaguti, 1966</xref>). Between the neighboring lamellae is the cytoplasm, which is enveloped with a membrane called cisterns. Electron dense lamellae with a high refractive index of 1.44 and the cisterns with a low refractive index of 1.35 are alternately arranged to form a periodic structure similar to the Bragg reflector. One pair of layers with high and low refractive index are considered as basic reflection units, which can enhance the reflection of a specific wavelength of light. Additionally, a quarter of the increased reflectivity wavelength is equal to the optical thickness (product of physical thickness and refractive index) of the layer pair.</p>
<p>The optical thickness of iridocytes of <italic>T. crocea</italic> is variable in a certain range. We measured the thickness of lamellae and cisterns of individual iridocytes to study the relationship between nanostructure and particular colors. The average recorded lamellar thickness was 76.84 &#xb1; 6.45 nm, ranging from 57.23 &#xb1; 4.97 nm to 115.53 &#xb1; 6.92 nm. The measurement is summarized in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Laminae and Cisterns Thickness of Iridocytes.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Cell color</th>
<th valign="top" align="center">Thickness of lamellae (nm)</th>
<th valign="top" align="center">Thickness of cisterns (nm)</th>
<th valign="top" align="center">Visible light</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Blue</td>
<td valign="top" align="center">83.12&#xb1;7.01</td>
<td valign="top" align="center">56.98&#xb1;5.59</td>
<td valign="top" align="left"><inline-graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g006.tif"/></td>
</tr>
<tr>
<td valign="top" align="left">Green</td>
<td valign="top" align="center">61.95&#xb1;5.05</td>
<td valign="top" align="center">57.50&#xb1;4.80</td>
  <td valign="top" align="left"><inline-graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g007.tif"/></td>
</tr>
<tr>
<td valign="top" align="left">Yellow</td>
<td valign="top" align="center">85.44&#xb1;7.29</td>
<td valign="top" align="center">73.00&#xb1;6.58</td>
  <td valign="top" align="left"><inline-graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g008.tif"/></td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3_2">
<title>FDTD Simulations</title>
<p>The reflectance spectrum of the first model designed to simulate the optical characteristics corresponding to the cell structures of blue, green, and yellow iridocytes is shown in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>. After the simulation was completed, the origin wavelength excitation modeled from 300 to 800 nm showed varying degrees of reflection. Some wavelengths of light were strongly enhanced, while a great part of wavelengths were eliminated by interference. The blue, green, and yellow curves represent the wavelength reflection of the iridocytes structure of the corresponding color. The simulated peak wavelength varies in the visible range, from blue band to yellow band, including three isolated and intensive one-peak curves. As expected, the peak wavelength of blue iridocytes is approximately 460 nm, and the reflection value in the blue band in the visible spectrum is 440 to 480 nm. The green curve and yellow curve move to the right relative to the blue curve, with peaks of 540 nm and 580 nm, respectively, corresponding to the green and yellow bands. <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> reveals that with the increase of the thickness and spacing of lamellae, the wavelength of the reflection peak increases, and the corresponding light band in the visible spectrum shifts toward red. To further investigate how the structure determines the color of iridocytes, it is necessary to quantify these two parameters, namely, the thickness and spacing of layers.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Spectrums of reflectance from simulation modeled by data based on measurements. The blue, green, and yellow curves indicate the simulated results of corresponding color models.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g004.tif"/>
</fig>
<p>The result of the second is shown in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>. The simulation was conducted by increasing h<sub>1</sub> every 10 nm with changing h<sub>2</sub> within a specified range to obtain the intensity of the reflection. When h<sub>1</sub> is fixed and h<sub>2</sub> increases from 40 nm to 110 nm, as seen from <xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A&#x2013;G</bold>
</xref>, the reflected wavelength gradually increases, shifts from ultraviolet to blue, and then towards red. In <xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A&#x2013;H</bold>
</xref>, when h<sub>2</sub> remains unchanged and h<sub>1</sub> increases, the wavelengths increase and the reflected wave bands become wider at the same time. It is worth noting that when h<sub>1</sub> reaches 120 nm and h<sub>2</sub> exceeds 90 nm, two bright bands appear in the reflection distribution (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5H</bold>
</xref>), with strong reflection in both visible wavelength and ultraviolet regions. Similar cases also appear in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5I</bold>
</xref>, h<sub>1</sub> = 130 nm and h<sub>2</sub> above 80 nm; <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5J</bold>
</xref>, h<sub>1</sub> = 140 nm, h<sub>2</sub> above 70 nm; <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5K</bold>
</xref>, h<sub>1</sub> = 150 nm, h<sub>2</sub> above 60 nm. More importantly, with the increase of thickness, iridocytes take successively multiple colorations of green, yellow, or even orange-red. Surprisingly, when the sum of thickness and spacing of lamellae reach above 210 nm, iridocytes seem to produce both visible and ultraviolet radiation, which has not been found in previous studies (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5I&#x2013;K</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Reflectivity distribution of simulation. <bold>(A&#x2013;K)</bold> represent the wavelength reflection intensity corresponding to a series of gradients with the high refractive index lamellae (h<sub>1</sub>, 50-150 nm) as well as different low refractive index spacing (h<sub>2</sub>, 40-110 nm).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883678-g005.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<sec id="s4_1">
<title>Bragg Stacks Govern the Structural Colors in Individual Iridocytes</title>
<p>Previous studies have preliminarily shown that the structural colors are determined by nanostructure (<xref ref-type="bibr" rid="B12">Ghoshal et&#xa0;al., 2016a</xref>). In our study, we found that an optical process is of great importance in iridocytes&#x2019; colors generated by the lamellae structure. That indicates that some changes in structure at the nanoscale within iridocytes should be accountable for the various structural colors displayed in the mantle. Our FDTD model is designed for the simulation of iridocytes with alternating high and low refractive index layers observed in <italic>T. crocea</italic> and applies to cells with similar structures. Furthermore, the ultrastructure structures of iridescent cells in <italic>T. maxima</italic> and <italic>T. gigas</italic> are consistent with that of iridocytes in <italic>T. crocea</italic>. Therefore, our model holds true in <italic>T. maxima</italic> and <italic>T. gigas</italic>. The results of the FDTD simulations show that there is a clear corresponding relationship between coloration and the internal Bragg stacks, which is associated with thicknesses and spacing of lamellae. Since the lamellae are thought to be a stable substance with constant thickness in iridocytes, in real situations, the variation of colors is more likely to be caused by the change of spacing. Similar to the lamellae in the iridocytes of giant clams, squid also has an unusual structure called reflectins that create thin-film interference, resulting in the reflection of certain incident light (<xref ref-type="bibr" rid="B4">Crookes et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B26">Kramer et&#xa0;al., 2007</xref>). The reflections in squid are connected to the extracellular environment. When the water flows between the reflectors and the extracellular space, the spacing of lamellae becomes larger or smaller, resulting in color variation of squid (<xref ref-type="bibr" rid="B9">DeMartini et&#xa0;al., 2013</xref>). We speculated that this phenomenon might also exist in giant clams, and studied the theoretical possibility of creating FDTD simulation of iridocytes in <italic>T. crocea</italic>. We also found that the structural colors caused by the thickness and spacing of laminae drive the reflected light of iridocytes to vary in the full spectrum as well as the ultraviolet region. However, different species or strains with typical coloration and patterns usually maintain their characteristics. Therefore, the Bragg structure of individual iridocytes may also stay in a stable range.</p>
</sec>
<sec id="s4_2">
<title>Functions of Individual Iridocytes to Produce Ultraviolet Radiation</title>
<p>In addition, there is another interesting phenomenon in the FDTD simulation results: when the lamellar structure meets certain conditions, iridocytes will generate ultraviolet radiation, which is not useful for giant clams. In general, low dose ultraviolet would benefit organisms with sterilization, while high energy strong ultraviolet radiation (280-400 nm) often imposes adverse effects, such as DNA damage, oxidative stress, and inhibition of photosynthesis (<xref ref-type="bibr" rid="B28">Lesser, 1996</xref>; <xref ref-type="bibr" rid="B42">van de Poll et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B29">Llabres et&#xa0;al., 2013</xref>). To protect the giant clam itself, there are countless eyes and photosensitivity cells along the margin of the mantle, which can sense light (<xref ref-type="bibr" rid="B44">Wilkens, 1984</xref>; <xref ref-type="bibr" rid="B27">Land, 2003</xref>). This visual system is also sensitive to ultraviolet radiation, thus enabling the giant clams to respond to a dynamic environment and to meet the requirements of clam symbionts (<xref ref-type="bibr" rid="B33">Rossbach et&#xa0;al., 2020a</xref>). Many marine bivalves can rapidly adapt to various environmental conditions. Marine bivalves have been found to actively modify the calcification physiology in response to an acidifying ocean (<xref ref-type="bibr" rid="B45">Zhao et&#xa0;al., 2020</xref>). In addition, pearl oysters can respond plastically to marine heatwaves with a series of enzymes activity enhanced (<xref ref-type="bibr" rid="B16">He et&#xa0;al., 2021</xref>). Previous studies have shown that giant clams can avoid high-intensity ultraviolet damage in some special ways. Iridocytes in the mantle are thought to eliminate part of ultraviolet radiation by performing non-photosynthetic backscattering (<xref ref-type="bibr" rid="B12">Ghoshal et&#xa0;al., 2016a</xref>). Some studies believe that the lamellae stacks of the iridocytes, guanine, absorb ultraviolet radiation to protect the giant clams and promote zooxanthellae photosynthesis by continuously emitting longer wavelengths of light (<xref ref-type="bibr" rid="B34">Rossbach et&#xa0;al., 2020b</xref>). The symbiotic microalgae harbored by giant clams, zooxanthellae, can absorb certain wavelengths of light for performing photosynthesis. Abundant zooxanthellae live in the mantle of giant clams and form the tertiary zooxanthellae tube (<xref ref-type="bibr" rid="B47">Norton and Jones, 1992</xref>). The iridescent cells are thought to be enhancers of zooxanthellae photosynthesis, improving the light-harvesting efficiency and solar energy conversion. More specifically, iridocytes over the surface of the mantle redeliver light to algal pillars with controlled doses (<xref ref-type="bibr" rid="B19">Holt et&#xa0;al., 2014</xref>) and selectively use some particular bands of light, resulting in iridescent colors. Therefore, the ultrastructure of iridocytes is closely related to the changes in the photic environment in giant clams, affecting the photosynthetic efficiency of symbiotic zooxanthellae. In addition, this may provide the driving force for the distribution of different clades of symbiosis that preferentially utilize different parts of the solar spectrum for photosynthesis. In addition, a special substance known as mycosporine-like amino acids (MAAs) was found in the mantle of giant clams, which plays the role of ultraviolet-resistance (<xref ref-type="bibr" rid="B20">Ishikura et&#xa0;al., 1997</xref>). The factors mentioned above provide photoprotection and promote the efficient use of sunlight energy. In this study, the simulation results show that iridocytes may also have the potential to produce minute doses of ultraviolet radiation, which means that ultraviolet radiation may impose both beneficial and adverse effects on the giant clams, depending on the ultraviolet radiation dose they receive or produce.</p>
</sec>
</sec>
<sec id="s5">
<title>Conclusion</title>
<p>The boring giant clam, <italic>T. crocea</italic>, is characterized by the diverse color of the mantle, which is determined by the nanoscale structure of Bragg stacks in iridocytes. The thickness of alternating high and low refractive index layers leads to different coloration. Based on our FDTD results, iridocytes can generate a full spectrum of light. With the increase of thickness, the wavelength becomes longer and the reflected light moves towards the blue band even to the red band. Elucidating the color formation mechanism of individual iridocytes may help to further understand the mutualism between giant clam and zooxanthellae, as well as the adaptation of organisms to the environment. Further studies are required to explore the mechanism of the formation and stability of the specific coloration.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>YHZ, ZY, and YL contributed to conception and design of the study. YYZ, JW, GS, QL, and SG conducted the experiments. ZZ performed the statistical analysis. YL and YYZ wrote the first draft of the manuscript. JL, YQ, and HM made suggestions and amendments to manuscripts. All authors contributed to manuscript revision, read, and approved the submitted version.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the Haina Provincial Key R&amp;D Programme(ZDYF2021XDNY135, ZDYF2021XDNY183), National Key Research and Development Program of China (2020YFD0901102, 2018YFD0901400), Key Special Project for Introduced Talents Team of SouthernMarine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0404), the Chinese Ministry of Science and Technology through the National Science Foundation of China (31872566, 31702340, 32002387), Guangdong Provincial Key R&amp;D Programme (2021B0202020003), the Network Service Local Plan STS of the Chinese Academy of Sciences (KFJ-STS-QYZD-158), the Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences (ISEE2018PY01, ISEE2018ZD02), the Open Foundation of the State Key Laboratory of Loess and Quaternary Geology(SKLLQG1813, SKLLQG1918), China Agriculture Research System of MOF and MARA, and the Science and Technology Planning Project of Guangdong Province, China (2017B030314052).</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>The authors would like to thank the editor and several reviewers for their assistance in the manuscript revision process.</p>
</ack>
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