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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.883661</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Developmental Expression Pattern of the <italic>Piwi1</italic> Gene, Timing of Sex Differentiation and Maturation in Artificially Produced Juvenile Boring Giant Clam, <italic>Tridacna crocea</italic>
</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Yinyin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1462837"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Yunqing</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1378689"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liao</surname>
<given-names>Qingliang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1378641"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shi</surname>
<given-names>Gongpengyang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1378640"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qin</surname>
<given-names>Yanpin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/605145"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Yuehuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/521964"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname>
<given-names>Haitao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1363309"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Li</surname>
<given-names>Jun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/418924"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yu</surname>
<given-names>Ziniu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/696109"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, Innovation Academy of South China Sea Ecology and Environmental Engineering, South China Sea Institute of Oceanology, Chinese Academy of Science</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>University of Chinese Academy of Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Southern Marine Science and Engineering Guangdong Laboratory</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Hainan Key Laboratory of Tropical Marine Biotechnology, Hainan Sanya Marine Ecosystem National Observation and Research Station, Sanya Institute of Oceanology Chinese Academy of Sciences</institution>, <addr-line>Sanya</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Xiaotong Wang, Ludong University, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Xiaoting Huang, Ocean University of China, China; Mi Zhao, Temple University, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Jun Li, <email xlink:href="mailto:jun.li@scsio.ac.cn">jun.li@scsio.ac.cn</email>; Ziniu Yu, <email xlink:href="mailto:carlzyu@scsio.ac.cn">carlzyu@scsio.ac.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Aquatic Physiology, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>05</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>883661</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>03</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Zhou, Li, Liao, Shi, Qin, Zhang, Ma, Li and Yu</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Zhou, Li, Liao, Shi, Qin, Zhang, Ma, Li and Yu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>P-element-induced wimpy testis (<italic>Piwi</italic>) is a key gene involved in germ cell development in a diverse range of organisms. However, in giant clams, the function of Piwi remains unclear. In the present study, we isolated the full-length cDNA of Piwi ortholog (<italic>Tc-Piwi1</italic>) and analyzed its expression patterns in the gonads of adult and juvenile <italic>Tridacna crocea</italic>. The results of qPCR showed that the transcript of <italic>Tc-Piwi1</italic> was mainly expressed in gonad tissue. In addition, the relative expression level of <italic>Tc-Piwi1</italic> increased with the proliferation of male and female germ cells during the adult gonad development stage, suggesting that <italic>Tc-Piwi1</italic> might be involved in gametogenesis. <italic>In situ</italic> hybridization revealed that <italic>Tc-Piwi1</italic> RNA was located in female and male germ cells and strongly expressed in male germ cells in the early stage. Furthermore, immunohistochemical experiments further confirmed that <italic>Tc-Piwi1</italic> was mainly located in primordial germ cells (PGCs), germ stem cells (GSCs), and female and male germ cells of early development, so it could be used as a marker gene of <italic>T. crocea</italic> germ cells. Whole-mount <italic>in situ</italic> hybridization suggested that <italic>Tc-Piwi1</italic> was of maternal origin and located in two clusters of cells in the trochophore-larvae stage, implying that these cells might be putative PGCs during the embryo development. Finally, <italic>Tc-Piwi1</italic> was used as a molecular marker to elucidate the gonadal formation, sex differentiation, and gonadal maturation process of juvenile <italic>T. crocea</italic> for the first time in the Tridacna family. Collectively, all these results revealed that <italic>Tc-Piwi1</italic> was involved in germline formation and sex differentiation in <italic>T. crocea</italic>.</p>
</abstract>
<kwd-group>
<kwd>
<italic>Piwi1</italic>
</kwd>
<kwd>germ cell</kwd>
<kwd>molecular maker</kwd>
<kwd>giant clams</kwd>
<kwd>
<italic>Tridacna crocea</italic>
</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="42"/>
<page-count count="11"/>
<word-count count="5600"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Giant clams are tropical marine shellfish with an important ecological value, which live in and around coral reefs in the tropical waters of the Indo-Pacific. They are effective ecosystem engineers and play multiple roles in coral reefs, including acting as important food suppliers for predators and scavengers, providing shelter for coral reef fish, and enhancing the stability of reef frameworks due to their dense population (<xref ref-type="bibr" rid="B31">Neo et&#xa0;al., 2015</xref>). In addition, the giant clam aquaculture industry has been supplying the food and marine aquarium trade market for about 40 years, which has gradually declined as a result of overexploitation, changes in the marine environment, and habitat degradation (<xref ref-type="bibr" rid="B32">Pandolfi et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B42">Zhao et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B14">He et&#xa0;al., 2021</xref>). Giant clams are simultaneous hermaphroditic marine bivalves. They initially reach sexual maturity as males and then develop ovaries and function simultaneously with the testes (<xref ref-type="bibr" rid="B37">Soo and Todd, 2014</xref>).</p>
<p>Germline is a cell lineage that segregates in the early stage of embryogenesis (<xref ref-type="bibr" rid="B30">Milani et&#xa0;al., 2017</xref>). The first germ cell is the primordial germ cells (PGCs), which are critical for animal reproductive development. In most organisms, PGCs are specified by maternally inherited cytoplasmic determinants (germplasm) during embryogenesis and then migrated to future gonad tissues (<xref ref-type="bibr" rid="B36">Sellars et&#xa0;al., 2007</xref>). Finally, PGCs reached an ultimate location and are encased in a somatic microenvironment called a niche to become the germ stem cells (GSCs) (<xref ref-type="bibr" rid="B30">Milani et&#xa0;al., 2017</xref>). Germ stem cells are specialized stem cells that can form gametes in the process of sexual reproduction. When an organism reaches sexual maturity, germ stem cells undergo self-renewal and differentiate into female and male germ cells and meiosis to produce functional gametes.</p>
<p>Argonaute/Piwi (Ago/Piwi, also known as PAZ Piwi domain proteins) family of protein has been discovered because of its function in stem cell self-renewal and germline development. Piwi proteins are predominantly present in germline and associated with a novel class of small RNAs known as Piwi-interacting, which serve diverse functions in germline development and gametogenesis (<xref ref-type="bibr" rid="B4">Cox et&#xa0;al., 1998</xref>). Substantial studies have shown that Piwi protein is necessary for germline specification and development (<xref ref-type="bibr" rid="B4">Cox et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B3">Carmell et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B39">Thomson and Lin, 2009</xref>). For instance, a murine homolog of Piwi (miwi), which encoded a cytoplasmic protein especially located in spermatocytes and spermatids, has been proven to be necessary for the process of spermatogenesis (<xref ref-type="bibr" rid="B5">Deng and Lin, 2002</xref>). In Piwi knockout mice, the genetic defects directly led to male infertility (<xref ref-type="bibr" rid="B11">Gou et&#xa0;al., 2017</xref>). In <italic>Danio rerio</italic>, <italic>zili</italic> and <italic>ziwi</italic> (homolog of Piwi in zebrafish) mutant fish have defects in oogenesis, as both mutations lead to female sterility (<xref ref-type="bibr" rid="B4">Cox et&#xa0;al., 1998</xref>). Piwi proteins can maintain germ stem cells by interacting with Polycomb group complexes PRC1 and PRC2 in niche and germline cells, thereby regulating ovarian germline stem cells and oogenesis in <italic>Drosophila melanogaster</italic> (<xref ref-type="bibr" rid="B33">Peng et&#xa0;al., 2016</xref>). Thus, the <italic>Piwi</italic> gene is an ideal target for regulatory studies to understand sexual differentiation and control sexual reproduction. In addition, Piwi is a component of germplasm that regulates the specification of PGCs during embryo development (<xref ref-type="bibr" rid="B29">Megosh et&#xa0;al., 2006</xref>). Immunofluorescence assays showed that Piwi protein colocalizes with germplasm markers such as Vasa, a highly conserved DEAD-box RNA helicase needed for germ cell formation (<xref ref-type="bibr" rid="B22">Lasko and Ashburner, 1988</xref>; <xref ref-type="bibr" rid="B23">Lasko and Ashburner, 1990</xref>). Thus, the <italic>Piwi</italic> gene could also be used to track the migration of PGCs and a germ-specific marker. For example, the expression patterns of <italic>Vasa</italic> and <italic>Piwi</italic> both showed that PGCs occurred in late embryogenesis (<xref ref-type="bibr" rid="B35">Schwager et&#xa0;al., 2015</xref>). In the centipede <italic>Strigamia maritima</italic>, <italic>Vasa</italic> and <italic>Piwi</italic> were used as marker genes, showing that the centipede PGCs are specified by zygotic mechanism (<xref ref-type="bibr" rid="B12">Green and Akam, 2014</xref>). In <italic>Crassostrea gigas</italic>, the <italic>Piwi-like</italic> gene was mainly expressed in the gonad, especially in the ovary. In addition, <italic>Piwi-like</italic> gene mRNA localized at a two-cluster cell which might be the putative PGCs by the gastrula stage, implying its potential to be used as a germ cell marker (<xref ref-type="bibr" rid="B41">Xu et&#xa0;al., 2020</xref>). In mollusk <italic>Chlamys farreri</italic>, <italic>Piwi1</italic> is essential for gametogenesis because the knockdown of this gene causes apoptosis in spermatocytes and oocytes of early development (<xref ref-type="bibr" rid="B27">Ma et&#xa0;al., 2017</xref>).</p>
<p>In bivalve mollusks, especially giant clams, data on the origin and development of germline are very scarce. In aquaculture, the knowledge of these processes will facilitate better control of the reproduction of giant clams, which still depends largely on empirical techniques. Besides, it is difficult to accurately distinguish germ cells from surrounding somatic cells, especially in the early development stages. Thus, here, we report the isolation of a Piwi homolog from <italic>T. crocea</italic> and its expression pattern during gonadal development and embryogenesis. This paper aims to study the expression characteristics of <italic>Tc-Piwi1</italic> and the origin and migration of PGCs and attempt to use <italic>Tc-Piwi1</italic> as a molecular marker to track the gonadogenesis, sex differentiation, and sex maturation of junior <italic>T. crocea.</italic> These data can be applied to the boring giant clam reproduction and to help understand better the developmental processes of the hermaphrodite giant clam&#x2019;s germline development.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Animals and Samples Collection</title>
<p>All the experimental giant clams were reared at the tropical marine biological research station in Sanya, Hainan province, China. Three individuals at the hermaphrodite stage were sacrificed, and eight tissues, including the heart, gills, hemocytes, gonads, pedis, siphonal mantle, digestive gland, and adductor muscle, were collected for tissue distribution analysis. The gonad tissue sampling method is as follows: for each individual, a part of the gonad tissue was collected and immediately immersed in TRIzol Reagent (Invitrogen, Thermo Fisher Scientific Inc., Waltham, MA, United States), and the rest of the gonad tissues were fixed with 4% paraformaldehyde overnight for later histology examination. The gonad tissues of giant clams at six different gonad developmental stages (the undifferentiated stage, male-dominated bisexual-phase gonad, the oocyte growing stage in ovotestis, the oocyte mature stage I in ovotestis, the oocyte mature stage II in ovotestis, and the oocyte regression stage in ovary) described by Zhou (unpublished) were collected and immersed in TRIzol Reagent.</p>
<p>Animals that reach sex maturity were allowed to spawn and fertilized artificially. After fertilization, samples at various embryo  and larvae stages (including fertilized eggs, 2-cell, 4-cell, 8-cell, blastula, gastrula embryos,  trochophore, D-shaped larvae, veliger larvae, metamorphosed larvae) were collected for expression pattern analysis. Besides, for juvenile <italic>T. crocea</italic>, the whole gonad was sampled at regular intervals for hematoxylin and eosin staining (H&amp;E staining) and immunohistochemistry experiments to track the development of germline cells. The whole tissue was fixed in Bouin&#x2019;s solution for 12 h and then transferred to 70% alcohol according the protocol of H&amp;E staining.</p>
</sec>
<sec id="s2_2">
<title>RNA Extraction and cDNA Synthesis</title>
<p>The total RNAs were isolated by TRIzol according to the manufacturer&#x2019;s instructions. Briefly, each sample was immersed in 1 ml of TRIzol reagent and then added 200 &#x3bc;l of chloroform. The sample was vortexed vigorously for 10 s and placed at room temperature for 3 min. The sample was then centrifuged at the speed of 12,000&#xd7;<italic/>g at 4&#xb0;C for 15 min, carefully absorbed 400&#x2013;500 &#x3bc;l supernatant, and mixed with the same volume of isopropyl alcohol to precipitate RNA at &#x2212;20&#xb0;C. The samples were centrifuged at 12,000&#xd7;g at 4&#xb0;C for 10 min, the supernatant threw away, and washed the RNA pellet twice with 75% ethanol. Finally, RNA pellet was air dried and dissolved in DEPC-treated water. The RNA quality and quantity were assessed with 1.0% agarose gel electrophoresis and Nanodrop 2000 (Thermo, USA). The first-strand cDNA synthesis was carried out by PrimeScript&#x2122; RT reagent Kit with gDNA Eraser (Takara, Dalian, China). Fresh RNA samples extracted from gonads were pooled (4 &#xb5;g in total), and the RACE-PCRs&#x2019; templates were synthesized using SMARTer RACE 5&#x2019;/3&#x2019;Kit (Takara, Dalian, China).</p>
</sec>
<sec id="s2_3">
<title>Cloning of <italic>Tc-Piwi1</italic> and Sequence Analysis</title>
<p>The full-length <italic>Tc-Piwi1</italic> cDNA sequence was acquired by 3&#x2032;RACE and 5&#x2032;RACE PCR using the above RACE-PCRs template. The 3&#x2032;- and 5&#x2032;-UTR were obtained by nested PCR, and the primers used are listed in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref> (designed by Primer 6.0 software based on the <italic>Piwi</italic> sequence of <italic>T. crocea</italic> transcriptome). PCR conditions were as follows: initial denaturation at 95&#xb0;C for 3 min, 35 cycles of 95&#xb0;C for 30 s, 58&#xb0;C for 30 s, and 72&#xb0;C for 1 min, and a final extension at 72&#xb0;C for 10 min. The initial product was diluted 50 times and used as the template for the second round of PCR reaction. The second PCR procedure consisted of denaturation at 94&#xb0;C for 5 min, followed by 35 amplifications at 94&#xb0;C for 15 s, 55&#xb0;C&#x2013;50&#xb0;C for 30 s, and 72&#xb0;C for 1 min, and a final extension at 72&#xb0;C for 10 min. All these procedures were set according to the operation manual. The amplified DNA fragment was gel-purified and cloned into the PMD-19T vector (Takara, Dalian, China) for sequencing.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Sequences of primers used in this study.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Primer</th>
<th valign="top" align="center">Sequence (5'-3')</th>
<th valign="top" align="center">Comment</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Piwi1_5&#x2032;RACE1</td>
<td valign="top" align="left">CATCTGGCTTGAAATCTACTCT</td>
<td valign="top" rowspan="2" align="left">5&#x2032;RACE of <italic>Tc-Piwi1</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_5&#x2032;RACE2</td>
<td valign="top" align="left">GCCAATCTGGGGCTTGTTCT</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_3&#x2032;RACE1</td>
<td valign="top" align="left">TCCATGACACACTGGGCCTC</td>
<td valign="top" rowspan="2" align="left">3&#x2032;RACE of <italic>Tc-Piwi1</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_3&#x2032;RACE2</td>
<td valign="top" align="left">TCTTGGTCGGACAAAGCATC</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_RT_F</td>
<td valign="top" align="left">TTACGCTAGAACAAGCCCCA</td>
<td valign="top" rowspan="2" align="left">RT-PCR of <italic>Tc-Piwi1</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_RT_R</td>
<td valign="top" align="left">CTTCACCACCACCACACCAA</td>
</tr>
<tr>
<td valign="top" align="left">qPiwi1_F</td>
<td valign="top" align="left">CGCAGATGTTAGAAGCCTTT</td>
<td valign="top" rowspan="2" align="left">Quantitative real-time PCR of <italic>Tc-Piwi1</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">qPiwi1_R</td>
<td valign="top" align="left">GACCACTGTTCCTGGTGGAG</td>
</tr>
<tr>
<td valign="top" align="left">q&#x3b2;-Actin_F</td>
<td valign="top" align="left">CCTTCTTGGGTATGGAATCTGC</td>
<td valign="top" rowspan="2" align="left">Quantitative real-time PCR of reference gene <italic>&#x3b2;-actin</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">q&#x3b2;-Actin_R</td>
<td valign="top" align="left">GACGGAGTATTTTCTCTCTGGTGG</td>
</tr>
<tr>
<td valign="top" align="left">qRPL5_F</td>
<td valign="top" align="left">CATACTCACACGAACTGCCTC</td>
<td valign="top" rowspan="2" align="left">Quantitative real-time PCR of reference gene <italic>RPL5</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">qRPL5_R</td>
<td valign="top" align="left">CTCCGTCTACTTCTGTCTGTCC</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_probe_F</td>
<td valign="top" align="left">GAATGGCTGTTTACCAGAGC</td>
<td valign="top" rowspan="2" align="left">Probe of <italic>Tc-Piwi1</italic> in ISH and WISH</td>
</tr>
<tr>
<td valign="top" align="left">Piwi1_probe_R</td>
<td valign="top" align="left">GGGGTCAGTCCTTCAGTCTT</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The amino acid sequence of Tc-Piwi1 protein was predicted by DNA star software. Conserve domain search was conducted by SMART; multiple sequence aliment was performed using the online tool Clustal Omega (<uri xlink:href="https://www.ebi.ac.uk/Tools/msa/clustalo/">https://www.ebi.ac.uk/Tools/msa/clustalo/</uri>). The sequence-specific identities among aligned sequences were assessed by BLASTP at NCBI, and the phylogenetic tree of Piwi proteins was constructed using the MEGA 7.0 software with 1,000 bootstrap trials with the neighbor-joining (NJ) algorithm. The protein mass of Tc-Piwi1 and theoretical isoelectric point (PI) was obtained using the Compute PI/Mw tool (<uri xlink:href="https://web.expasy.org/compute_pi/">https://web.expasy.org/compute_pi/</uri>).</p>
</sec>
<sec id="s2_4">
<title>Transcriptional Analysis by Quantitative RT-PCR</title>
<p>Sequence-specific primers were designed, <italic>&#x3b2;-actin</italic> of <italic>T. crocea</italic> was used as a reference gene, and 60S ribosomal protein L5 (<italic>RPL5</italic>) was used as the reference gene only when calculating the relative expression of <italic>Tc-Piwi1</italic> at different embryo development stages. The amplification was carried out in a total volume of 20 &#x3bc;l using the LightCycler 480II system (Roche, USA) with SYBR Green Master Mix (Takara, Dalian, China), following the manufacturer&#x2019;s instructions. The qRT-PCR procedure consisted of denaturation at 94&#xb0;C for 1 min, 40 cycles of amplification at 95&#xb0;C for 15 s, 55&#xb0;C for 30 s, and 72&#xb0;C for 20 s, and 1 min signal collection at 85&#xb0;C for 15 s in each cycle. At the end of each reaction, dissociation curve analysis was conducted to verify amplification specificity. The relative expression level of <italic>Tc-Piwi1</italic> was calculated using the 2<sup>&#x2212;&#x394;&#x394;t</sup> method (<xref ref-type="bibr" rid="B26">Livak and Schmittgen, 2001</xref>). All data were presented as mean &#xb1; SD from three samples with three parallel repetitions.</p>
</sec>
<sec id="s2_5">
<title>
<italic>In Situ</italic> Hybridization</title>
<p>According to the cDNA sequence of the <italic>Tc-Piwi1</italic> gene, the 541-bp cDNA fragment of <italic>Tc-Piwi1</italic> was amplified with sense and antisense primers. After the gene-specific fragment was acquired, the probe of <italic>Tc-Piwi1</italic> was labeled with digoxigenin (DIG; Roche Applied Science, Germany). Gonadal tissues were fixed overnight with 4% RNase-free paraformaldehyde fixative at 4&#xb0;C. The next day, the tissues were washed three times with PBS and dehydrated with 30% sucrose solution. Finally, dehydrated tissues were embedded with OCT and preserved at &#x2212;80&#xb0;C. This experiment was performed on the tissue sections as described by <xref ref-type="bibr" rid="B25">Liang et&#xa0;al. (2018)</xref>. The whole-mount <italic>in situ</italic> hybridization (WISH) experiment was conducted according to the protocol described by Fabioux with some modifications using the same probe as above (<xref ref-type="bibr" rid="B7">Fabioux et&#xa0;al., 2004a</xref>; <xref ref-type="bibr" rid="B6">Fabioux et&#xa0;al., 2004b</xref>). Nikon e80i microscope was used for observation and digital image shooting.</p>
</sec>
<sec id="s2_6">
<title>Immunohistochemistry</title>
<p>The antigens of <italic>Tc-piwi1</italic> (a.a. 384&#x2013;724) were generated by the <italic>Escherichia coli</italic> recombinant protein expression system. The polyclonal antibody against <italic>Tc-Piwi1</italic> was purified from the serum of a rabbit with antigen injection of Freund&#x2019;s adjuvant four times at 12-day intervals (Genecreate Biological Engineering Company, Wuhan, China). Gonadal tissues were fixed in Bouin&#x2019;s fixative for 24 h, dehydrated, and embedded in paraffin. Sections were cut at 5 mm thickness and incubated overnight at 37&#xb0;C. Immunohistochemistry methods were described previously (<xref ref-type="bibr" rid="B20">Kobayashi et&#xa0;al., 2009</xref>). Briefly, sections were deparaffinized in xylene and hydrated in descending ethanol concentration, then antigen retrieval in 0.01 M citrate buffer (pH 6.0) was performed at 95&#xb0;C for 10 min. When the temperature dropped to 37&#xb0;C, sections were treated with 3% H<sub>2</sub>O<sub>2</sub> in 80% methanol for 15 min and washed with PBS for 15 min. After that, samples were blocked in bovine serum albumin (3%) for 1 h and incubated with preimmune serum (for the negative control) and anti-Piwi1 primary antibody (1:250 dilution) at room temperature for 1 h. Specific goat-anti-rabbit IgG (1:1,000 dilution) was used as a secondary antibody and incubated for 1 h at room temperature. After washing with PBST, the sections were color developed with 3,3&#x2019;-diaminobenzidine (DAB) and counterstained with hematoxylin. Tissue sections were then observed, and images were captured using a Nikon E80i microscope.</p>
</sec>
<sec id="s2_7">
<title>Statistical Analysis</title>
<p>All data were analyzed by SPSS18.0 and expressed as mean &#xb1; SD based on three biological replicates. The significance was analyzed by one-way ANOVA, and the detected difference was considered significant at <italic>p</italic> &lt; 0.05.</p>
</sec>
</sec>
<sec id="s3">
<title>Results</title>
<sec id="s3_1">
<title>Characteristics of <italic>Tc-Piwi1</italic>
</title>
<p>The full-length cDNA of <italic>Tc-Piwi1</italic> was 3,492 bp, consisting of a 2,637-bp ORF, a 90-bp 5&#x2032;-UTR, and a 765-bp 3&#x2032;-UTR (GenBank accession OM372430). The ORF of <italic>Tc-Piwi1</italic> encoded a deduced protein of 878 amino acids with a calculated molecular mass of 99.51 kDa and the theoretical isoelectric point (PI) of 9.36. The conserved domain analysis completed by SMART showed that Tc-Piwi1 protein contained two conserved domains: PAZ (a.a 294&#x2013;430) and Piwi (a.a 571&#x2013;864) (<xref ref-type="supplementary-material" rid="SF1">
<bold>Supplementary Figure S1</bold>
</xref>). Multiple sequence alignment showed that the Tc-Piwi1 protein shared high sequence identity with mollusks&#x2019; Piwi homologs, such as 65.7% identical to <italic>C. gigas</italic>, 67.1% to <italic>Mytilus galloprovincialis</italic>, and 60.8% to <italic>C. farreri</italic>. Besides, the sequence identity of Tc-Piwi1 shared 50.3%, 49.3%, and 49.1% similarity with <italic>Homo sapiens</italic>, <italic>Mus musculus</italic>, and <italic>Gallus gallus</italic>, respectively. The sequence similarity of Piwi between <italic>T. crocea</italic> and zebrafish was 50% (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The phylogenetic tree showed that Tc-Piwi1 was first clustered with mollusks&#x2019; Piwi1 homologs, then clustered with a branch of Piwi homologs from <italic>H. sapiens</italic>, <italic>M. musculus</italic>, <italic>G. gallus</italic>, and <italic>D. rerio</italic> (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Multiple sequence alignment of Piwi1 proteins. The PAZ and Piwi domain are marked with a continuous line. The identical and similar sequences are highlighted in purple and gray, respectively. The accession numbers for the analyzed sequences are as follows: <italic>H. sapiens</italic> (NP 004755.2), <italic>M. musculus</italic> (NP067286.1), <italic>G. gallus</italic> (NP001092322.1), <italic>D. rerio</italic> (AAL57170.1), <italic>M. galloprovincialis</italic> (AMN88361.1), <italic>C. farreri</italic> (ALK82294.1), and <italic>C. gigas</italic> (XP 034338428.1) &#x2018;*&#x2019; indicates positions which have a single, fully conserved residue; &#x2018;:&#x2019; represent a similar amino acid residue position.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883661-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Phylogenetic analysis of Piwi orthologs using the neighbor-joining method with 1,000 bootstrap replications. Tc-Piwi1 protein was marked by a red star.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883661-g002.tif"/>
</fig>
</sec>
<sec id="s3_2">
<title>Expression Profiles of <italic>Tc-Piwi1</italic> in Different Tissues and Adult Six Gonadal Developmental Stages</title>
<p>The spatial expression pattern of the <italic>Tc-Piwi1</italic> gene in eight tissues of an adult hermaphroditic individual was analyzed by qRT-PCR. High levels of transcripts were observed in hermaphroditic gonadal tissues (ovotestis). In addition, the expression of the <italic>Tc-Piwi1</italic> gene in gills, hemocytes, and digestive glands was very low, while it was almost not expressed in other tissues (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). In the development stage of adult gonads, the result of qRT-PCR showed that the expression of <italic>Tc-Piwi1</italic> increased significantly in stages I and II (<italic>p</italic> &lt; 0.05) and gradually declined with the maturation of female germ cells. Finally, the expression of <italic>Tc-Piwi1</italic> reached a low level in stages IV and V, which is comparable with that in stage 0 (<italic>p</italic> &gt; 0.05) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Expression profiles of Tc-Piwi1 in <bold>(A)</bold> different tissues and <bold>(B)</bold> adult six gonad developmental stages by qRT-PCR. Stage 0 to stage V represent the undifferentiated stage, the male-dominated bisexual-phase gonad, the oocyte growing stage in ovotestis, the oocyte mature stage I in ovotestis, the oocyte mature stage II in ovotestis, and the oocyte regression stage in the ovary, respectively. <italic>&#x3b2;-Actin</italic> was used as a reference gene. Data are represented as the mean &#xb1; SD (N = 3), bars not sharing with the same letter are significantly differed at p &lt; 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883661-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Location of <italic>Tc-Piwi1</italic> in Adult Gonad Tissues of <italic>T. crocea</italic>
</title>
<p>The location of <italic>Tc-Piwi1</italic> mRNA in the gonad of adult <italic>T. crocea</italic> was confirmed by the result of <italic>in situ</italic> hybridizations (ISH) in the male and female gonads. <italic>Tc-Piwi1</italic> mRNA was found in both female and male germ cells and showed a stronger signal in male germ cells at the early development stage. No signal was observed in somatic cells of female and male gonad tissues. A relatively weak signal of <italic>Tc-Piwi1</italic> was observed in mature oocyte cytoplasm, a strong signal was observed in spermatogonia and spermatocytes, but no signal was detected in mature spermatids (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Cellular location of <italic>Tc-Piwi1</italic> in female and male gonad tissues demonstrated by <italic>in situ</italic> hybridization (ISH). <bold>(A, B)</bold> The results of ISH with <italic>Tc-Piwi1</italic> mRNA antisense probe in the ovary (Scale bar = 40 &#xb5;m). <bold>(C, D)</bold> represent the results of ISH in testis by <italic>Tc-Piwi1</italic> mRNA antisense probe (Scale bar = 25 &#x3bc;m). The positive signals were stained with dark-blue or purple. The cells in histological sections include spermatozoa (Spz), spermatocyte (Spc), spermatogonia (Spg), and oocyte (Oc).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883661-g004.tif"/>
</fig>
</sec>
<sec id="s3_4">
<title>Temporal Expression Pattern of <italic>Tc-Piwi1</italic> During Embryogenesis</title>
<p>The result of qRT-PCR showed that <italic>Tc-Piwi1</italic> mRNA was maternally deposited in oocytes which showed higher expression in the early embryo from fertilized eggs to blastula stages. While the expression level became lower from gastrulation to the juvenile (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). The results of WISH showed that positive hybridization signals of <italic>Tc-Piwi1</italic> mRNA appeared in the fertilized eggs. As the fertilized eggs developed into 2-cells, 4-cells, and 8-cells, the transcripts of <italic>Tc-Piwi1</italic> were located uniformly at the cleavage cells. At the trochophore-larvae stage, the uniform distribution disappeared. <italic>Tc-Piwi1</italic> mRNA gradually centralized and progressively become restricted to two small descendent micromeres in mesoderm at the trochophore-larvae stage; we speculated that these preliminary cells in these two clusters are PGCs or the founders of PGCs in <italic>T. crocea</italic>. At the D-larvae stage and middle veliger larvae stage, only a smaller spot can be detected around the digestive tissues (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Expression of <italic>Tc-Piwi1</italic> gene in fertilized oocytes and various embryonic stages of <italic>T. crocea</italic>. <bold>(A)</bold> Quantitative real-time PCR results for <italic>Tc-Piwi1</italic>, and <italic>RPL5</italic> was used as a reference gene. Data are represented as the mean &#xb1; SD (N = 3), bars not sharing with the same letter are significantly differed at p &lt; 0.05. <bold>(B)</bold> Location of <italic>Tc-Piwi1</italic> in the fertilized egg and various developmental stages of embryos by WISH. (a) Fertilized eggs; (b) 2 cells; (c) 4 cells; (d) 8 cells; (e) Blastula; (f) Gastrula; (g) trochophore larvae; (h) D-shaped larvae; (i) Veliger larvae. Scale bar = 30 &#xb5;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883661-g005.tif"/>
</fig>
</sec>
<sec id="s3_5">
<title>Development and Differentiation of Germ Cell in Juvenile <italic>T. crocea</italic>
</title>    <p>The identification of cell types was performed according to the description of <xref ref-type="bibr" rid="B2">Awaji and Hamano (2004)</xref>. Gonads of most juveniles under 4-month old remained undifferentiated. However, the gonads of 5-month-old individuals (shell length 4.00 &#xb1; 1.00 mm) contained several PGCs, which are larger in size and have an intense positive signal of Tc-Piwi1, which occurred in the gonadal cavity and could be distinguished from the somatic cells of gonads (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>). At 6-month of age (shell length 15.00 &#xb1; 1.00 mm), the number of PGCs increased and enclosed by a lay of somatic cells; thus, these PGCs were also germ stem cells (GSCs) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). The number of GSCs increased with the development of giant clams to 8-month old. Meanwhile, with the proliferation of GSCs and somatic cells, the volume of the gonadal cavity increased (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). As gonadal development progresses, a small number of spermatogonia were observed on the gonad of several <italic>T. crocea</italic> individuals of 10-month old, and a strong signal of Tc-Piwi1 was observed in spermatogonia (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6D</bold>
</xref>). At the age of 12 months, a large number of individuals reached the testicular maturation stage, with a large amount of sperm and a small number of spermatogonia and spermatocytes. Tc-Piwi1 was strongly expressed in spermatogonia, and a relatively weak signal was detected in spermatocytes (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6E</bold>
</xref>). Testicular maturation lasts for several months and may experience the sperm release phase. In the gonads of 17-month-old individuals, several oogonia were found in ovotestis, and a strong signal of Tc-Piwi1 was observed in oogonia (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6F</bold>
</xref>). However, when the season shifted to winter, most oogonia stopped further development and entered the resting stage. The resting stage is characterized by connective tissue fulling in the gonad, and a small number of gonad cavities fulling with undifferentiated germ cells were visible, which may differentiate into male and female germ cells (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6G</bold>
</xref>). Until the age of 25 months (the second reproduction cycle), substantial individuals developed into the mature stage of ovotestis, which was characterized by a large number of mature oocytes and sperm, and the signals of Tc-Piwi1 protein in mature oocyte was weaker than that in oogonia (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6H</bold>
</xref>). The hermaphroditic stage lasted about 5 months.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Observation of the gonad at the early development of juvenile <italic>T. crocea</italic> by immunohistochemistry. <bold>(A&#x2013;H)</bold> The immunohistochemistry of gonads of <italic>T. crocea</italic> at 5, 6, 8, 10, 12, 17, 21, and 25 months, respectively. Germ cells specifically stained by anti-Tc-Piwi1 antibody are in dark brown. The sections incubated without the primary antibodies did not show any immunostainings (A0, E0, G0, and H0). The cells in histological sections include primordial germ cells (PGC), germ stem cells (GSC), spermatozoa (SPZ), spermatocyte (SPC), spermatogonia (SPG), oocyte (OC), oogonia (OG), and symbiotic dinoflagellates (zooxanthellae (ZX)). Scale bar = 20 &#xb5;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-883661-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<title>Discussion</title>
<p>Understanding the gonadal development of giant clams is conducive to the better development of the artificial breeding of <italic>Tridacna</italic>. PGCs generation and gametogenesis are two key components of animal reproduction. Previous studies have reported that the <italic>Piwi</italic> gene plays an important role in the reproduction system (<xref ref-type="bibr" rid="B18">Houwing et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B39">Thomson and Lin, 2009</xref>). At present, a <italic>Piwi1</italic> gene of <italic>T. crocea</italic> was cloned; Tc-Piwi1 protein contains conserved PAZ and Piwi domains, which has a high sequence identity with the Piwi homolog of vertebrates, which might imply that Tc-Piwi1 protein also has the same conserved role in invertebrate giant clams.</p>
<p>The result of tissue distribution analysis of <italic>Tc-Piwi1</italic> showed that the gene was mainly expressed in gonads, which was consistent with the prediction that this gene had important functions in the reproductive system. In addition, the expression of <italic>Tc-Piwi1</italic> is relatively low in other tissues, such as gills, hemocytes, digestive glands, and muscles, which means that it may have other functions in these organs, such as the involvement in the immune response. Gills, hemocytes, and digestive glands are regarded as immune organs involved in the innate immune response and phagocytosis of microbes in mollusks. In mosquitoes, Piwi exhibited an antiviral response mediated with Piwi RNAs (piRNAs) (<xref ref-type="bibr" rid="B16">Hess et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B24">Leger et&#xa0;al., 2013</xref>). In <italic>Lymnaea stagnalis</italic> and <italic>C. gigas</italic>, there is high expression of <italic>Piwi</italic> in muscle and reproduction tract due to the active Piwi-piRNA-dependent transposon silencing events in these tissues (<xref ref-type="bibr" rid="B19">Jehn et&#xa0;al., 2018</xref>). It has been reported that the <italic>Piwi</italic> gene plays an important function in gametogenesis, germ cell maintenance, and germline fate specification (<xref ref-type="bibr" rid="B39">Thomson and Lin, 2009</xref>). At present, the high expression of <italic>Tc-Piwi1</italic> in stages I and II of adult gonadal development indicated that <italic>Tc-Piwi1</italic> is also involved in the process of gametogenesis, which has been confirmed in <italic>C. farreri</italic> (<xref ref-type="bibr" rid="B27">Ma et&#xa0;al., 2017</xref>). It needs to be further verified by functional experiments in <italic>T. crocea</italic>.</p>
<p>Although Piwi was mainly expressed in gonad tissues, the cellular localization of <italic>Piwi</italic> in gonads among different species is different. <italic>Ziwi</italic> gene of zebrafish, the homolog of <italic>Piwi</italic>, is expressed at various stages of oocytes, showing a higher level of expression in oogonia and early-stage oocytes and a lower expression level in later-stage oocytes (<xref ref-type="bibr" rid="B18">Houwing et&#xa0;al., 2007</xref>). In <italic>T. crocea</italic>, the <italic>Tc-Piwi1</italic> signal in the mature oocyte is relatively weak. During spermatogenesis, <italic>Tc-Piwi1</italic> mRNA was abundant in spermatogonia and then decreased in spermatocytes and almost not expressed in mature sperm. This expression pattern was similar to that in fish and most mollusks (<xref ref-type="bibr" rid="B17">Houwing et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B27">Ma et&#xa0;al., 2017</xref>). While, a murine <italic>Piwi</italic> gene showed high expression in spermatids (<xref ref-type="bibr" rid="B5">Deng and Lin, 2002</xref>). Combined with the result of ISH in the present study, <italic>Tc-Piwi1</italic> was mainly located in male germ cells in early development, and its expression was low in mature germ cells, which was different from mammals.</p>
<p>In this study, the results of qPCR showed that <italic>Tc-Piwi1</italic> mRNA was of maternal origin, which was consistent with the expression pattern of the <italic>Piwi</italic> gene in Pacific oysters (<xref ref-type="bibr" rid="B41">Rui et&#xa0;al., 2020</xref>), <italic>Drosophila</italic> (<xref ref-type="bibr" rid="B28">Mani et&#xa0;al., 2014</xref>), and zebrafish (<xref ref-type="bibr" rid="B38">Tan et&#xa0;al., 2002</xref>). In mollusks, maternal-to-embryonic transition (MET) occurs from fertilized eggs to gastrula, showing that the expression levels of <italic>Piwi</italic>, <italic>Nanos</italic>, and <italic>Vasa</italic> decreased gradually (<xref ref-type="bibr" rid="B6">Fabioux et&#xa0;al., 2004b</xref>; <xref ref-type="bibr" rid="B40">Xu et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B41">Xu et al., 2020</xref>). However, at the egg cleavage phase, the expression of <italic>Tc-Piwi1</italic> mRNA increased sharply from the 2-cell stage to the 8-cell stage, which is similar to the <italic>Piwi</italic> expression in bovine early embryo (<xref ref-type="bibr" rid="B34">Russell et&#xa0;al., 2016</xref>). In the MET period of an early bovine embryo, maternal transcripts and protein were gradually replaced, and reprogramming events occurred promptly after fertilization and persisted through the MET phase but are accompanied by an increase in retrotransposon expression (<xref ref-type="bibr" rid="B34">Russell et&#xa0;al., 2016</xref>). Thus, we speculated that the increased expression level of <italic>Tc-Piwi1</italic> (from 2-cell stage to 8-cell stage) was mainly to protect the genome from the increase of retrotransposon activity. While the increased expression of <italic>Tc-Piwi1</italic> in the cleavage stage is part of the regulatory pathway that constrains the expression of retrotransposon, the exact reason needs to be confirmed by further research. The results of WISH also showed that <italic>Tc-Piwi1</italic> mRNA had maternal supply and was uniformly distributed in early cleavage. In early trochophore larvae, <italic>Tc-Piwi1</italic> mRNA was detected on the right and left of the midline of the larvae, which was similar to the location of oyster <italic>vasa-like</italic> gene (<xref ref-type="bibr" rid="B6">Fabioux et&#xa0;al., 2004b</xref>) and Pacific oyster <italic>Nanos</italic> gene (<xref ref-type="bibr" rid="B40">Xu et al., 2020</xref>), indicating that these two cluster cells were the PGCs or the founders of PGCs. Finally, <italic>Tc-Piwi1</italic> mRNA remained at a low expression level in the area of the future gonadal tissues near the digestive gland. There are two basic models of the original of PGCs: one is maternally provided germplasms determine germ cell fate (preformation), and another is cell types inducing PGCs fate (epigenesis) (<xref ref-type="bibr" rid="B15">Herpin et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B8">Feng et&#xa0;al., 2011</xref>). This conserved expression pattern of <italic>Tc-Piwi1</italic> might suggest that both preformation and epigenesis of germ cell specification mechanisms might coexist in giant clams during embryonic development (<xref ref-type="bibr" rid="B21">Kranz et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B41">Xu et al., 2020</xref>).</p>
<p>Through the immunohistochemical method, it was confirmed for the first time that <italic>Tc-Piwi1</italic> was specifically expressed in germ cells and could be used as a marker gene of germ cells. This result was consistent with the <italic>Piwi</italic> gene in Pacific oysters (<xref ref-type="bibr" rid="B41">Xu et al., 2020</xref>). In addition, the process of gonad formation, sex differentiation, and gonad maturation of juvenile <italic>T. crocea</italic> were clarified for the first time in the family Tridacna. The first step of gonadogenesis is the appearance of the gonad cavity, which was constituted of squamous endothelial cells (<xref ref-type="bibr" rid="B2">Awaji and Hamano, 2004</xref>). This step was not observed in the present research because the gonad tissues of a juvenile under 5-month old were too small to obtain the complete structure of the gonadal cavity. The PGCs were observed histologically in the gonad of 5-month <italic>T. crocea</italic> individuals for the first time, which occurred 2 months later than that in juvenile abalone (<xref ref-type="bibr" rid="B2">Awaji and Hamano, 2004</xref>). In <italic>Viviparus viviparus</italic>, PGCs are originated from pericardial tissues (<xref ref-type="bibr" rid="B13">Griffond, 1977</xref>). In the present study, we inferred that PGCs were located in the digestive gland according to the result of WISH. The emergence of spermatogonia, which are larger cells with a central coarse nucleus according to Franco&#x2019;s description, confirms the beginning of male sex differentiation (<xref ref-type="bibr" rid="B9">Franco et&#xa0;al., 2008</xref>). Spermatogonia of juvenile <italic>T. crocea</italic> were first observed at about 10 months of age and mature sperm were observed at about 12 months of age, implying that <italic>T. crocea</italic> was male in the first year, which is consistent with that of <italic>Pinctada maxima</italic> (<xref ref-type="bibr" rid="B1">Adzigbli et&#xa0;al., 2019</xref>). The sex differentiation of females was confirmed by the appearance of oogonia in the gonad. The oogonia of <italic>T. crocea</italic> were first observed at about 17 months of age, and the mature oocytes were observed at about 25 months of age (in the second reproduction season), implying that <italic>T. crocea</italic> juveniles reached hermaphrodite at about 25 months of age, much earlier than <italic>T. gigas</italic>, which take about 10 years to achieve functional reproduction (<xref ref-type="bibr" rid="B10">Gomez et&#xa0;al., 2000</xref>). Thus, <italic>T. crocea</italic>, the giant clam species with the fastest sexual maturity, is a good material to study the mechanism of gonadal development of the family Tridacna.</p>
</sec>
<sec id="s5">
<title>Conclusion</title>
<p>In the present study, we obtained a <italic>Piwi1</italic> gene and explored its potential role in the gonadal development of <italic>T. crocea</italic>. The expression profile showed that <italic>Tc-Piwi1</italic> had a high expression level in gonad tissues, mainly located in PGCs, GSCs, female and male germ cells of early development, suggesting that <italic>Tc-Piwi1</italic> could be used as a germ cell marker. In addition, the relative expression level increased with the proliferation of male and female germ cells during adult gonadal development, especially in stages I and II, revealing that <italic>Tc-Piwi1</italic> might involve in gametogenesis. Furthermore, WISH examination showed that <italic>Tc-Piwi1</italic> was of maternal origin, and the localization of <italic>Tc-Piwi1</italic> mRNA in mesodermal cells might be the putative PGCs in <italic>T. crocea</italic> during the embryo development stage. Finally, using <italic>Tc-Piwi1</italic> as a molecular marker, the process of sex differentiation and gonad maturation of <italic>T. crocea</italic> juvenile was also clarified for the first time in the family Tridacna. Collectively, all these results indicated that <italic>Tc-Piwi1</italic> is involved in germline formation and differentiation in <italic>T. crocea.</italic>
</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>&#x2018;The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SF1">
<bold>Supplementary Materials</bold>
</xref>. Further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>JL and ZY: conceived the study. YYZ: performed experiments and drafted the manuscript; YL, QL, GS, and YQ carried out the laboratory work and participated in the data analysis. HM and YHZ collected the giant clams. All authors listed have made a substantial, direct, and intellectual contribution to the work and approved it for publication.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the National Key Research and Development Program of China (2020YFD0901102; 2018YFD0901400); the Chinese Ministry of Science and Technology through the National Science Foundation of China (31872566; 31702340; 32002387 ;42076121, M-0163); Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0402); the Network Service Local Plan STS of the Chinese Academy of Sciences (KFJ-STS-QYZD-158); the Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences (ISEE2018PY01; ISEE2018ZD02); the Open Foundation of the State Key Laboratory of Loess and Quaternary Geology (SKLLQG1813; SKLLQG1918); Guangdong Basic and Applied Basic Research Foundation (2021A1515011181); National Marine Genetic Resource Center; China Agriculture Research System of MOF and MARA (CARS-49); Guangxi innovation-driven development program (No. AA19254032); and the Science and Technology Planning Project of Guangdong Province, China (2020B1212060058).</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2022.883661/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2022.883661/full#supplementary-material</ext-link>
</p>
  <supplementary-material xlink:href="DataSheet_1.docx" id="SF1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document">
<label>Supplementary Figure 1</label>
<caption>
<p>Full-length of the <italic>Tc-Piwi1</italic> cDNA and its conserved domains of predicted amino acid in <italic>T. crocea</italic>.<bold>(A)</bold> The start codon and termination codon are in red, the sequence of predicted amino acid sequence is in blue, the PAZ and Piwi domain are shadowed and marked by black box, respectively. <bold>(B)</bold> Two conserved domains of Tc-Piwi1 in T. <italic>crocea</italic>.</p>
</caption>
</supplementary-material>
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