<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.879184</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Changes in the Bacterial Community Associated With Experimental Symbiont Loss in the Mucus Layer of <italic>Cassiopea xamachana</italic> Jellyfish</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Carabantes</surname>
<given-names>Natalia</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1791564"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cerqueda-Garc&#xed;a</surname>
<given-names>Daniel</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/518708"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Garc&#xed;a-Maldonado</surname>
<given-names>Jos&#xe9; Q.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/604321"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Thom&#xe9;</surname>
<given-names>Patricia E.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/530114"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Posgrado en Ciencias del Mar y Limnolog&#xed;a, Posgrado UNAM, Universidad Nacional Aut&#xf3;noma de M&#xe9;xico</institution>, <addr-line>Ciudad de M&#xe9;xico</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Unidad Acad&#xe9;mica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnolog&#xed;a-UNAM</institution>, <addr-line>Puerto Morelos</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Red de Manejo Biorracional de Plagas y Vectores, Instituto de Ecolog&#xed;a, AC&#x2013;INECOL, Cl&#xfa;ster Cient&#xed;fico y Tecnol&#xf3;gico BioMimic<sup>&#xae;</sup>
</institution>, <addr-line>Xalapa</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Departamento de Recursos del Mar, Centro de Investigaci&#xf3;n y de Estudios Avanzados del Instituto Polit&#xe9;cnico Nacional (CINVESTAV) Unidad M&#xe9;rida</institution>, <addr-line>M&#xe9;rida</addr-line>, <country>Mexico</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Xavier Pochon, The University of Auckland, New Zealand</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Nicola Gabriele Kriefall, Boston University, United States; Emily Aguirre, University of Southern California, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Patricia E. Thom&#xe9;, <email xlink:href="mailto:thome@cmarl.unam.mx">thome@cmarl.unam.mx</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Microbial Symbioses, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>19</day>
<month>05</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>879184</elocation-id>
<history>
<date date-type="received">
<day>18</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>04</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Carabantes, Cerqueda-Garc&#xed;a, Garc&#xed;a-Maldonado and Thom&#xe9;</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Carabantes, Cerqueda-Garc&#xed;a, Garc&#xed;a-Maldonado and Thom&#xe9;</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>
<italic>Cassiopea xamachana</italic> is a model system for studies in animal symbiosis with algal symbionts. This medusa is also associated with a microbial community that can impact its health, but this community has not been thoroughly studied. Shifts in the bacterial community following the loss of symbionts involving stress, environmental changes, or seasonal fluctuations can be complex, as the role of symbionts in structuring this community is not well established. To understand the interplay among microbial associates with this host, we explored the experimental diminishing of algal symbionts, and the influence of seasonal fluctuations over the structure of the bacterial community, through 16S rRNA gene high-throughput sequencing. Results showed that Gammaproteobacteria, Bacteroidia, and Alphaproteobacteria were dominant in all the mucus samples at the beginning of the experiments. However, after 28 days, bleached medusas showed a marked increase in Gammaproteobacteria, specifically in the genus <italic>Vibrio</italic>, as evidenced by Linear Discriminant Analysis of Effect Size (LEfSe). Seasons also resulted in shifts of the bacterial community, although bacterial genera were distinct from those found in bleached medusas, suggesting temporal associations with the host. According to PERMANOVA analysis, seasonal fluctuations affected the dominant bacterial members (p = 0.07), but symbiont presence was a more significant driver (p=0.001). We found the bacterial community of <italic>C. xamachana</italic> is like that of other jellyfish and corals, which furthers the interest in this animal as a study model. Defining relevant bacterial genera can help us understand the functional role of the holobiont members that assemble and maintain a healthy microbial community. Also, studies in other regions where <italic>C. xamachana</italic> distributes can help us define a core bacterial community for this medusa.</p>
</abstract>
<kwd-group>
<kwd>symbiotic jellyfish</kwd>
<kwd>16S rRNA</kwd>
<kwd>surface mucus layer</kwd>
<kwd>medusa</kwd>
<kwd>microbiome</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="96"/>
<page-count count="13"/>
<word-count count="6234"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Cnidarian-microbe interactions are ecologically important (<xref ref-type="bibr" rid="B67">Pitt et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B84">Tinta et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B25">Glasl et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B76">R&#xf6;thig et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B90">Webster and Reusch, 2017</xref>), facilitating energy acquisition and potentially contributing to the nutrition (<xref ref-type="bibr" rid="B46">Lesser et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B70">R&#xe4;decker et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B75">R&#xf6;thig et&#xa0;al., 2021</xref>), health (<xref ref-type="bibr" rid="B9">Bourne et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B31">Hernandez-Agreda et&#xa0;al., 2017</xref>), immunity (<xref ref-type="bibr" rid="B6">Bosch, 2013</xref>), and defense of the hosts (<xref ref-type="bibr" rid="B71">Ritchie, 2006</xref>; <xref ref-type="bibr" rid="B42">Krediet et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B25">Glasl et&#xa0;al., 2016</xref>). A surface mucus layer (SML) covers the Cnidarian body and protects their live tissues from physical, chemical, and biological impacts (<xref ref-type="bibr" rid="B10">Brown and Bythell, 2005</xref>). Due to its chemical composition, the SML sustains a diverse microbial community of Bacteria, Archaea, Microalgae, and Fungi, many of which are host specific (<xref ref-type="bibr" rid="B74">Rohwer et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B44">Lampert et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B15">Carlos et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B16">Cleary et&#xa0;al., 2016</xref>). Considering the sparse distribution of nutrients in oligotrophic waters, where many Cnidarians develop, the SML represents a rich substrate that stimulates bacterial growth (<xref ref-type="bibr" rid="B28">Hansson and Norrman, 1995</xref>; <xref ref-type="bibr" rid="B93">Wild et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B12">Bythell and Wild, 2011</xref>). The composition of Cnidaria-associated bacterial communities is dynamic, displaying seasonal and geographic variations (<xref ref-type="bibr" rid="B57">Morrow et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B80">Sharp et&#xa0;al., 2017</xref>), particularly in short-term studies (<xref ref-type="bibr" rid="B95">Yang et&#xa0;al., 2017</xref>). However, the mechanisms that structure and regulate this community remain poorly understood.</p>
<p>As in corals, some Scyphozoan jellyfishes contain symbiotic dinoflagellate algae, like species in the genera <italic>Cassiopea</italic>, <italic>Mastigias</italic>, <italic>Linuchae</italic>, and <italic>Phyllorhiza</italic> (reviewed in <xref ref-type="bibr" rid="B19">Djeghri et&#xa0;al., 2019</xref>). The medusae complete their energetic demands with photosynthetic products supplied by the symbiotic algae, which also contribute to the production of the SML (<xref ref-type="bibr" rid="B33">Hofmann and Kremer, 1981</xref>; <xref ref-type="bibr" rid="B52">McCloskey et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B23">Freeman et&#xa0;al., 2016</xref>). Jellyfish may also lose their symbionts and bleach after heat and light stress (<xref ref-type="bibr" rid="B54">McGill and Pomoroy, 2008</xref>; <xref ref-type="bibr" rid="B61">Newkirk et&#xa0;al., 2018</xref>). The disruption of the symbiosis can affect the SML secretion and modify its biochemical properties (<xref ref-type="bibr" rid="B45">Lee et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B72">Rivera-Ortega and Thom&#xe9;, 2018</xref>), which may be followed by changes in the associated bacteria, as occurs with corals (<xref ref-type="bibr" rid="B8">Bourne et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B25">Glasl et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B94">Wright et&#xa0;al., 2019</xref>). Symbionts can contribute significantly to mucus production in symbiotic corals (<xref ref-type="bibr" rid="B10">Brown and Bythell, 2005</xref>). A fraction of the carbon translocated to hosts gets lost from the association as dissolved and particulate organic carbon (mucus); this loss represents, for example, between 5% and 50% in 48&#xa0;h incubations in the coral <italic>Stylophora pistillata</italic> (<xref ref-type="bibr" rid="B86">Tremblay et&#xa0;al., 2012</xref>), or 20-45% of daily net photosynthate in corals (as reviewed by <xref ref-type="bibr" rid="B10">Brown and Byhtell, 2005</xref>). But unlike corals, soft-body Cnidarians can directly use the energy from the translocation of organic carbon from the algal symbionts for biomass increase and mucus production. Environmental variations that affect the photosynthesis of symbionts can thus affect mucus production. Therefore, soft-body symbiotic Cnidarians like the jellyfish <italic>C. xamachana</italic> and the sea anemone <italic>Exaiptasia diaphana</italic>, represent an opportunity to directly study the interaction of algal symbionts with the animal host, and with the commensal/opportunistic bacteria that live in the mucus layer. But unlike <italic>E. diaphana</italic>, <italic>C. xamachana</italic> maintains a closer symbiotic relationship (<xref ref-type="bibr" rid="B54">McGill and Pomoroy, 2008</xref>; <xref ref-type="bibr" rid="B89">Voolstra, 2013</xref>; <xref ref-type="bibr" rid="B23">Freeman et&#xa0;al., 2016</xref>).</p>
<p>The Bacteria-Cnidaria-Symbiodiniaceae must be studied as consortia since the exchange and recycling of fundamental nutrients influence its health and stability (<xref ref-type="bibr" rid="B9">Bourne et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B90">Webster and Reusch, 2017</xref>; <xref ref-type="bibr" rid="B26">Goulet et&#xa0;al., 2020</xref>). However, such exchange can be affected by bleaching, disease, and colonization by opportunistic pathogens (<xref ref-type="bibr" rid="B51">Matthews et&#xa0;al., 2020</xref>). Shifts in the bacterial community following the loss of symbionts involving stress, environmental changes, or seasonal fluctuations can be complex, considering that the Bacteria-Symbiodiniaceae association is just beginning to be studied. Some studies have postulated the existence of bacteria closely associated with the surface layer of the symbiont that can help it tolerate physiological stress (as ROS) or variations in environmental conditions (<xref ref-type="bibr" rid="B51">Matthews et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B24">Garrido et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B49">Maire et&#xa0;al., 2021</xref>). A model system such as the jellyfish <italic>C. xamachana</italic> may prove helpful to define the role of algal symbionts as drivers of the bacterial community in symbiotic medusae.</p>
<p>
<italic>Cassiopea</italic> medusae are Scyphozoans (Order Rhizostomeae) common in shallow waters of tropical and subtropical ecosystems like mangroves, seagrasses, and coral reefs (<xref ref-type="bibr" rid="B62">Niggl et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B63">Ohdera et&#xa0;al., 2018</xref>). The planktonic medusae shift from a benthic polyp stage (<xref ref-type="bibr" rid="B17">Colley and Trench, 1983</xref>), which may bring changes in the associated microbial community. Also, the medusa stage moves with marine currents, potentially affecting its distribution and microbiome. <italic>Cassiopea</italic> jellyfish increase their abundance and size in areas where human population density is high (<xref ref-type="bibr" rid="B82">Stoner et&#xa0;al., 2011</xref>). Nutrient loading can lead to blooms of epibenthic jellyfish which can have consequences to the ecology of the impacted area, competing with other filter-feeding consumers, and locking the biomass that can alter community structure and ecosystem function. Further, metamorphosis of the jellyfish larvae occurs only after the symbiont has been collected by the polyp and temperatures rise above 20&#xb0;C (<xref ref-type="bibr" rid="B20">Fitt and Costley, 1998</xref>). With global change advancing, temperatures that used to limit the reproduction of the jellyfish to the summer months might be surpassed during colder months and exacerbate the density of these jellyfish (<xref ref-type="bibr" rid="B1">Aljbour et&#xa0;al., 2019</xref>). A limited number of studies have focused on the bacterial community of symbiotic Rhizostomeae jellyfishes. For example, the bacterial community of <italic>C. xamachana</italic> held in captivity was studied, showing the dominance of two families, Moxarellaceae and Pseduomonadaceae (<xref ref-type="bibr" rid="B75">R&#xf6;thig et&#xa0;al., 2021</xref>). In the abundant Pacific jellyfish <italic>Mastigias papua</italic>, the associated bacterial community displayed high variation within the species, low diversity, and the highest bacterial abundance related to members of the Endozoicomonadaceae family (<xref ref-type="bibr" rid="B16">Cleary et&#xa0;al., 2016</xref>).</p>
<p>Among non-symbiotic Rhizostomeae jellyfishes, the moon jellyfish <italic>Aurelia aurita</italic> is one of the best-studied. Its bacterial community is similar throughout its pelagic developmental stages, only the polyp stage being different (<xref ref-type="bibr" rid="B91">Weiland-Br&#xe4;uer et&#xa0;al., 2015</xref>). Also, reports indicate differences associated with geographic location (<xref ref-type="bibr" rid="B41">Kramar et&#xa0;al., 2019</xref>). After a jellyfish bloom, in the senescence phase, the bacterial community of <italic>A. aurita</italic> was characterized by an increase in Gammaproteobacteria, specifically <italic>Vibrionaceae</italic> and <italic>Alteromonadaceae</italic> (<xref ref-type="bibr" rid="B41">Kramar et&#xa0;al., 2019</xref>). Among other species studied, <italic>Cyanea lamarckii</italic> displayed significant differences in the bacterial community of the umbrella in contrast to other body parts (<xref ref-type="bibr" rid="B29">Hao et&#xa0;al., 2019</xref>). The authors also assessed the bacterial community in different life stages that in general, increased in diversity from larval to adult stages. A recent study of four jellyfish species that form large blooms indicated species-specific differences in their bacterial communities (<xref ref-type="bibr" rid="B66">Peng et&#xa0;al., 2021</xref>); <italic>Vibrio</italic> was the bacterial genus dominant in <italic>Aurelia coerulea</italic>, as in other <italic>Aurelia</italic> species (<xref ref-type="bibr" rid="B91">Weiland-Br&#xe4;uer et&#xa0;al., 2015</xref>). <italic>Mycoplasma</italic> dominated the <italic>Rhopilema esculentum</italic> and <italic>Nemopilema nomurai</italic> jellyfishes, but in <italic>Cyanea nozakii</italic> its bacterial community was equally abundant in <italic>Sphingomonas</italic>, <italic>Phyllobacterium</italic>, and <italic>Ralstonia</italic> (<xref ref-type="bibr" rid="B66">Peng et&#xa0;al., 2021</xref>).</p>
<p>
<italic>Cassiopea xamachana</italic> is a benthic jellyfish that lives in ecologically obligate symbiosis with the photosynthetic dinoflagellate <italic>Symbiodinium microadriaticum</italic> (<xref ref-type="bibr" rid="B17">Colley and Trench, 1983</xref>; <xref ref-type="bibr" rid="B43">Lampert, 2016</xref>). The adult medusa rests on the sea bottom, their convex umbrella and oral arms facing upwards to allow the capture of light by their symbionts (<xref ref-type="bibr" rid="B43">Lampert, 2016</xref>; <xref ref-type="bibr" rid="B63">Ohdera et&#xa0;al., 2018</xref>). The colonization by algal symbionts supports the transition from polyp to adult medusa (<xref ref-type="bibr" rid="B32">Hofmann et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B61">Newkirk et&#xa0;al., 2018</xref>). The relative simplicity of culturing polyps and adults of <italic>C. xamachana</italic> in laboratory conditions, makes this symbiotic jellyfish an ideal model system to study the mechanisms that regulate the colonization of the host by their symbionts. However, it is not clear how much <italic>C. xamachana</italic> depends on its algal symbionts, nor if a decrease in algal symbionts can restructure its associated bacterial community. In this study, we characterized the bacterial community of the SML of this symbiotic jellyfish while in captivity, contrasting summer and winter seasons, and the effect of a significant loss of symbionts (bleaching).</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Organisms and Experimental Conditions</title>
<p>Adult medusas of <italic>C. xamachana</italic> previously collected from Nichupt&#xe9; lagoon in NE Quintana Roo, Mexico were used for this study. The organisms were maintained in captivity in an open system pond (100 L seawater), under natural light and temperature conditions for more than a year prior to the experiments. For the experimental procedures, medusas were taken from the farming pond and maintained individually in one Liter beakers with 500 mL of seawater from the farming pond, with bubbling air and daily seawater replacements for the duration of the experiments (28 days). All medusas in beakers were maintained under a roof with indirect ambient light. Medusas were sampled in two seasons, in summer (late August 2019) and winter (early March 2020) with mean temperatures of ~ 29.02&#xb0;C and ~ 26.05&#xb0;C, respectively (<xref ref-type="bibr" rid="B78">SAMMO, 2018-2019</xref>). Symbiotic medusas (n = 6) were maintained as controls and compared to bleached medusas before bleaching (n = 3) and after bleaching (n = 3). Samples were taken at day zero and after 28 days each season (total number of samples = 24). The organisms were not fed during the experimental procedures.</p>
</sec>
<sec id="s2_2">
<title>Artificial Bleaching of Medusas</title>
<p>Medusas with a similar umbrella size (6&#xa0;cm in diameter) were selected. A procedure was chosen to avoid high-temperature bleaching, which can significantly modify the bacterial community, including an increase in heterotrophy and virulence genes (<xref ref-type="bibr" rid="B48">Littman et&#xa0;al., 2011</xref>). The experimental bleaching of medusas was achieved by adding a mixture of monosaccharides, following <xref ref-type="bibr" rid="B68">Pogoreutz et&#xa0;al. (2017)</xref>. The mixture of sugars contained: (D+) glucose (4.14 mg L<sup>-1</sup>), (D+) galactose (3.59 mg L<sup>-1</sup>), and mannitol (2.25 mg L<sup>-1</sup>), dissolved in 200 mL of distilled water. Seawater (500 mL) containing 3 mL of this mixture was used daily to replace the seawater of the beaker containing each medusa for 28 consecutive days, with a final mixed sugar concentration of 0.3 mg L<sup>-1</sup>. Every day, measurements of the umbrella diameter in all medusas were taken to evaluate the loss of biomass during the experiments.</p>
<p>The bleaching success was evaluated by weekly sampling a tentacle fragment from each medusa, using sterilized scissors. Each tentacle fragment was weighed and ground with a Dounce homogenizer. The homogenate was centrifuged at 13,000 RPM for 5&#xa0;min and the supernatant removed. The pellet was transferred to a microcentrifuge tube, washed twice with milli-Q water, and resuspended in 500 &#xb5;L of sterile seawater, adding Lugol (30%) to aid in symbiont counting. Symbiont density was quantified with a hemocytometer in an optic microscope (3 replicate counts per sample) and the data normalized to the wet weight (g) of the tentacle. Further, we photographed a portion of a tentacle of each medusa with a fluorescence microscope (Axioskop 40 with aim 20X Tex Red Fs 15) at the beginning and at the end of the 28-day treatment.</p>
</sec>
<sec id="s2_3">
<title>SML and Seawater Sampling for DNA Extraction</title>
<p>We collected samples from the SML of symbiotic medusas maintained as controls and bleached medusas, at the start and end of 28 days. All sampling was repeated for summer and winter. For the collection of the SML, the medusas were brought to the lab and individually placed in a sterile beaker with 200 mL of sterilized seawater. After twenty minutes, the released mucus (500 &#xb5;l per medusa) was collected with a transfer pipette and was processed immediately for total DNA extraction.</p>
<p>We also sampled seawater from the farming pond, at the beginning (n = 6, each season) and at the end of the experimental time (n = 6, each season). Seawater samples were pre-filtered through 2.5 &#xb5;m (Whatman &#x2122;) to remove large debris, followed by filtering with Durapore<sup>&#xae;</sup> membranes (0.45 &#xb5;m and 0.22 &#xb5;m). These last two filters were conserved for immediate DNA extraction. DNA extraction from the SML and seawater samples was carried out with DNeasy<sup>&#xae;</sup> Power Biofilm Kit following the manufacturer&#x2019;s instructions. DNA integrity was evaluated by electrophoresis in 1% agarose gels. DNA concentration and quality were assessed with a BioSpectrometer (Eppendorf).</p>
</sec>
<sec id="s2_4">
<title>16S rRNA Libraries Preparation and Sequencing</title>
<p>PCR amplification of the hypervariable V3 and V4 regions of 16S rRNA gene was performed using the primers 515F = 5&#x2019;-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG - 3&#x2019; and 806R = 5&#x2019;-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATC- 3&#x2019; and the conditions suggested by <xref ref-type="bibr" rid="B39">Klindworth et&#xa0;al. (2013)</xref>. The PCR mixture of each 20 &#xb5;l reaction contained 2 &#xb5;l DNA, 200 U DreamTaq (ThermoFisher Scientific), 2.5 &#xb5;l 10X buffer, 1&#xb5;l 25 mM MgCl<sub>2</sub>, 0.4 &#xb5;l deoxynucleotide triphosphate mix (dNTPs, 10 mM), and 0.2 &#xb5;M for each primer. The amplification reaction was performed in an Applied Biosystems thermal cycler (Veriti 96) with an initial denaturalization of 3&#xa0;min at 95&#xb0;C, followed by 25 cycles of 95&#xb0;C (30 s), 55&#xb0;C (45 s), and 72&#xb0;C (30 s), and a final extension of 5&#xa0;min at 72&#xb0;C. PCR products were verified in a 1% agarose gel-TAE (Tris-acetate-EDTA) and 1 &#xb5;l of the PCR reaction was evaluated with a Bioanalyzer DNA 1000 chip. A first purification of the PCR amplicons was performed with AMpure XP Illumina adapters, and a second PCR was used for barcoding with the Nextera XT Index kit, having an initial denaturation of 3&#xa0;min at 95&#xb0;C, followed by 8 cycles of 95&#xb0;C (30 s), 55&#xb0;C (30 s) and 72&#xb0;C (30 s), with a final extension of 5&#xa0;min at 72&#xb0;C. PCR products were also purified with AMpure XP. Indexed PCR products were quantified with a Qubit<sup>&#xae;</sup> 3.0 Fluorometer (Life Technologies, USA). Finally, the library was diluted to 4 nM using Tris pH 8.5. For sequencing, the library was denatured with fresh NaOH, diluted with hybridization buffer, and heated. Twenty % of PhiX was used as an internal control. Illumina sequencing was carried out in CINVESTAV-M&#xe9;rida using an Illumina-MiSeq platform (Illumina, San Diego, CA, USA), with a MiSeq reagent nano kit V2 (2 &#xd7; 250).</p>
</sec>
<sec id="s2_5">
<title>Bioinformatic Analysis</title>
<p>We processed the 2 x 250 paired-end reads with the QIIME2 pipeline (<xref ref-type="bibr" rid="B14">Caporaso et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B5">Bolyen et&#xa0;al., 2019</xref>). Both forward and reverse reads were trimmed in position 40 from the 5&#x2019; end and truncated to a length of 240. For denoising and resolving the ASVs we used the DADA2 plugin, removing chimeric sequences with the &#x201c;consensus&#x201d; method (<xref ref-type="bibr" rid="B13">Callahan et&#xa0;al., 2016</xref>). For the taxonomic classification we used SILVA 132 as a reference database using the classify-consensus-vsearch plugin (<xref ref-type="bibr" rid="B73">Rognes et&#xa0;al., 2016</xref>). The sequences were deposited in the NCBI database under BioProject ID, PRJNA810909. Representative sequences were aligned and masked with MAFFT (<xref ref-type="bibr" rid="B37">Katoh and Standley, 2013</xref>), and a phylogenetic tree was built with FasterTree 2 (<xref ref-type="bibr" rid="B69">Price et&#xa0;al., 2010</xref>). Chloroplast, mitochondrial ASVs, and unknowns were pruned, and the feature table exported to the R environment for statistical analysis performed with phyloseq (<xref ref-type="bibr" rid="B55">McMurdie and Holmes, 2013</xref>) using Vegan (<xref ref-type="bibr" rid="B64">Oksanen et&#xa0;al., 2007</xref>) and ggplot2 v3.1.0 (<xref ref-type="bibr" rid="B92">Wickham, 2016</xref>) libraries.</p>
</sec>
<sec id="s2_6">
<title>Statistical Analyses</title>
<p>To analyze the bacterial diversity present within each individual SML sample, the feature table with all samples was normalized with the CSS (Cumulative Sum Scaling) method. The observed species alpha diversity indexes were then calculated. Beta-diversity metrics were calculated for all samples, using the weighed UniFrac distance. A principal coordinate analysis (PCoA) with weighted UniFrac distance was applied in R to visualize beta diversity variations. A nested PERMANOVA according to season and condition was used to calculate the significant differences between groups (control and bleached) using 999 permutations. A Linear Discriminant Analysis Effect Size (LEfSe; <xref ref-type="bibr" rid="B79">Segata et&#xa0;al., 2011</xref>) was performed after removing samples with lower than 16,900 reads by rarefaction, to identify bacterial taxa with differential relative abundances between seasons and for the bleached condition, with a cutoff of LDA&gt;2 and a <italic>p</italic>-value &lt;0.05. The relative abundances were plotted in R with significant LEfSe genera in each category (condition and season). Symbiont density of control and bleached medusas was assessed with an ANOVA test in SigmaPlot V.12.1.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Experimentally Bleached <italic>Cassiopea xamachana</italic>
</title>
<p>Bleached <italic>C. xamachana</italic> was successfully obtained by adding a mixture of sugars. Cellular counts showed a significant reduction of symbiont density in bleached medusas in summer and winter after seven days of treatment (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>,  p = 0.001; <xref ref-type="supplementary-material" rid="SM1">
<bold>Table S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 1</bold>
</xref>). After 14 days, and up to the 28 days of treatment, symbiont density remained low and constant, with a total loss of symbionts of 84-99% for bleached medusas in summer and 89-99% in winter. Control medusas preserved their symbionts after 28 days (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>
<xref ref-type="fig" rid="f1">
<bold>A</bold>
</xref>). We observed a diminishing size of the umbrella in all medusas possibly due to the lack of enough food (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S1</bold>
</xref>). Tentacles of bleached medusas were checked with a fluorescence microscope at day 0 and after 28 days of treatment (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1</bold>
</xref>
<xref ref-type="fig" rid="f1">
<bold>B&#x2013;E</bold>
</xref>); phenotypic characteristics of the tentacles of control medusas showed fluorescence and brownish color during the 28 days of treatment (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>
<xref ref-type="fig" rid="f1">
<bold>F</bold>
</xref>) and bleached medusas at day 28 showed the absence of brownish color that gives the presence of symbionts (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>
<xref ref-type="fig" rid="f1">
<bold>G</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Experimental bleaching and its effects on symbiont density in <italic>C. xamachana</italic>. Medusas were bleached by daily additions of a mixture of sugars (see Methods). <bold>(A)</bold> Symbiont cell density (cells ml<sup>-1</sup>g<sup>-1</sup>) in medusas treated for 28 days in summer (red circles) and winter (blue circles); control medusas in summer (triangles) and winter (rhombs). Values expressed as the mean &#xb1; s.e.m. Letters a and b show significant differences between the density of symbionts from bleached medusas against control medusas. See <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 1</bold>
</xref>. <bold>(B, C)</bold> Confocal fluorescence microscopy images of <italic>C. xamachana</italic> tentacles of symbiont density in control medusas at day 0 and day 28 and <bold>(D, E)</bold> symbiont density at the initial (day 0) and end of bleaching treatment (day 28). White arrows indicate symbiont cells in host tentacles, scale bars are 100 &#x3bc;m. <bold>(F)</bold> Photographs of control medusas from day-0 to 28 days in summer (1-3) and winter (4-6). <bold>(G)</bold> Photographs of the phenotypic response of medusas at day-0 and after 28 days of bleaching treatment in summer (7-9) and winter (10-12). The numbers on top of the photographs are the identity for each medusa.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-879184-g001.tif"/>
</fig>
</sec>
<sec id="s3_2">
<title>Community Composition and Diversity</title>
<p>A total of 24 SML and 11 seawater samples were sequenced. DADA2 plugin analysis resolved 12,854 ASVs (Amplicon Sequences Variants). The sequencing resulted in 1,611,190 high-quality sequence reads (<xref ref-type="supplementary-material" rid="SM1">
<bold>Table S2</bold>
</xref> and <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 2</bold>
</xref>). A total of 610, 883 reads were assigned for seawater and 1,000,307 reads for mucus samples. Control samples in both seasons showed the lowest coverage with 138,376 reads. The analysis of ASVs for all samples indicated 12,654 ASVs affiliated with the domain Bacteria, and only the ASVs with a relative abundance equal or less than 1% were collapsed into &#x201c;Other&#x201d; (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 3</bold>
</xref>).</p>
<p>Principal Coordinates Analysis (PCoA) indicated a differential clustering of ASVs from SML and those from seawater samples (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S2</bold>
</xref>). Therefore, seawater samples were excluded from subsequent analyses to emphasize the fine-scale differences of ASVs associated with the SML of medusas. The PCoA analysis of control and bleached samples at day-0 showed a close distance among independent replicates in both seasons, except for winter controls (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). After 28 days in the vessels, control samples were separated according to season, while bleached samples remained grouped according to symbiotic condition (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). This analysis suggested the effect of the season on the clustering of control samples and the effect of the bleached condition on the clustering of mucus samples after 28 days.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Weighted Unifrac distance PCoA plot for SML samples. Increasing distance between points equates to decreasing similarity between samples from control (Ctrl) and bleached (Bleach) medusas at day-0 and day-28 in summer (S) and winter (W). The polygons denote groups of samples formed. Circles represent a single sample of summer and triangles represent a single sample of winter; the same color represents independent samples per condition or season. Significant differences were found for season (p = 0.017) and symbiotic condition (p = 0.001) after a PERMANOVA comparison (see <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-879184-g002.tif"/>
</fig>
<p>Control medusas at day-0 and day-28 in both seasons showed a similar number of observed ASVs and alpha diversity parameters, although no statistical analysis was performed due to the low number of samples (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref> and <xref ref-type="supplementary-material" rid="SM1">
<bold>Table S3</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 4</bold>
</xref>). After 28 days of manipulation, bleached medusas in both seasons had a lower number of observed ASVs and alpha diversity parameters.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Box plot showing observed ASVs and Alpha diversity metrics. <bold>(A)</bold> Number of observed ASVs, <bold>(B)</bold> Shannon (H&#x2019;), and <bold>(C)</bold> Simpson diversity indexes of the bacterial community in mucus samples from control (Ctrl) and bleached (Bleach) medusas in summer (S) and winter (W). Values are from 3 samples per symbiotic condition and season (at the start (0) and end (28) of 28 days of manipulations). See <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 4</bold>
</xref> for raw data.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-879184-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>SML Bacterial Community by Symbiotic Condition and Season</title>
<p>Gammaproteobacteria, Bacteroidia, and Alphaproteobacteria were observed as initially dominant classes in all the mucus samples at the beginning of the experiment (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref>). However, after 28 days, bleached medusas showed a marked increase in Gammaproteobacteria, specifically in the genus <italic>Vibrio</italic> for summer samples (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref> and <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). Linear discriminant effect size (LEfSe) analysis identified within bleached medusas initially, <italic>Endozoicomonas</italic>, <italic>Tenacibaculum</italic>, and 21 other genera as significantly different, but after 28 days, differentially abundant genera were <italic>Vibrio</italic>, <italic>Sphingobium</italic>, and <italic>Simiduia</italic> (LDA score&gt;2, p &lt;0.05) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>
<xref ref-type="fig" rid="f5">
<bold>A</bold>
</xref>). Detailed differences in the relative abundance of bacterial genera that were significantly different in bleached medusas between day-0 and day-28, corroborated these significant shifts, in particular for the more abundant <italic>Endozoicomonas</italic> and <italic>Tenacibaculum</italic> (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>
<xref ref-type="fig" rid="f5">
<bold>B</bold>
</xref>). Seasons also resulted in significant differences although genera were different from those underlined in bleached medusas; in summer were <italic>Pir4_lineage</italic>, <italic>Rheinheimera</italic>, <italic>Sphingomonas</italic>, and others, and in winter <italic>Pseudoalteromonas</italic>, <italic>Enhydrobacter</italic>, <italic>Acinetobacter</italic>, and others (LDA score&gt;2, p &lt;0.05) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>
<xref ref-type="fig" rid="f6">
<bold>A</bold>
</xref>), showing differences in the relative abundance according to season (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>
<xref ref-type="fig" rid="f6">
<bold>B</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>The bacterial composition of medusas at the genus taxonomic level. Bar plots display the bacterial composition in the mucus of all samples (Control and bleached medusas, at days 0 and 28) in summer and winter. The 40 most abundant genera were plotted and distinguished by color. For a relative abundance of all genera, see <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material 3</bold>
</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-879184-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Linear Discriminant Analysis of Effect Size (LEfSe) at the genus level by symbiotic condition in bleached medusas. The analysis shows <bold>(A)</bold> significant differences in dominant bacterial genera in Bleached medusas between day-0 (beige bars) and day-28 (gray bars) (LDA score&gt;2, p &lt;0.05). Horizontal columns represent the relative abundance of bacteria that were significantly different between symbiotic conditions. <bold>(B)</bold> Abundance for the genera highlighted by the LEfSe analysis for both sampling times. Note the different values for the x-axis.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-879184-g005.tif"/>
</fig>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Linear Discriminant Analysis of Effect Size (LEfSe) at the genus level by season. The analysis shows <bold>(A)</bold> genera that differed significantly in abundance in summer (red bars) and winter samples (blue bars) (LDA score &gt; 2; p &lt; 0.05). <bold>(B)</bold> Abundance for the genera highlighted by the LEfSe analysis for both seasons. Note the different values for the x-axis.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-879184-g006.tif"/>
</fig>
<p>Pairwise-PERMANOVA analysis indicated significant differences in the bacterial composition of bleached medusas in samples from day-0 and day-28, regardless of the season (F = 5.424345, R = 0.3516743, p = 0.0318; <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Also, this analysis indicated that control and bleached medusas on day-28 were significantly different (F = 6.591283, R= 0.397273, p = 0.0078; <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). PERMANOVA covariate analysis showed that the bleached condition was significantly important in defining the bacterial community in the mucus of <italic>C. xamachana</italic> (F = 5.8289, R = 0.40364, p = 0.001), although the season also presented a value of significance (F = 3.2240, R = 3.2240, p = 0.017; <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Pairwise PERMANOVA analysis of the bacterial community of mucus between Control and Bleached samples.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Pairs</th>
<th valign="top" align="center">F. Model</th>
<th valign="top" align="center">R2</th>
<th valign="top" align="center">p.value</th>
<th valign="top" align="center">p.adjusted</th>
<th valign="top" align="center">sig</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">1. Bleached (0) vs Bleached (28)</td>
<td valign="top" align="center">5.424345</td>
<td valign="top" align="center">0.3516743</td>
<td valign="top" align="center">0.0106</td>
<td valign="top" align="center">0.0318</td>
<td valign="top" align="center">&#x2022;</td>
</tr>
<tr>
<td valign="top" align="left">2. Bleached (0) vs Control (28)</td>
<td valign="top" align="center">2.815415</td>
<td valign="top" align="center">0.2196897</td>
<td valign="top" align="center">0.0062</td>
<td valign="top" align="center">0.0186</td>
<td valign="top" align="center">&#x2022;</td>
</tr>
<tr>
<td valign="top" align="left">3. Bleached (28) vs Control (28)</td>
<td valign="top" align="center">6.591283</td>
<td valign="top" align="center">0.3972738</td>
<td valign="top" align="center">0.0026</td>
<td valign="top" align="center">0.0078</td>
<td valign="top" rowspan="2" align="center">*</td>
</tr>
<tr>
<td valign="top" align="left">4. Control (0) vs Control (28)</td>
<td valign="top" align="center">1.381511</td>
<td valign="top" align="center">0.1213820</td>
<td valign="top" align="center">0.134</td>
<td valign="top" align="center">0.1608</td>
</tr>
<tr>
<td valign="top" align="left">Total</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1.0900198</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>sig = significance codes: 0.01 &#x2018;*&#x2019; 0.05 &#x2018;&#x2022;&#x2019;.</p>
</fn>
<fn>
<p>(0) = Day-0 of treatment.</p>
</fn>
<fn>
<p>(28) = Day-28 of treatment.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>PERMANOVA covariate analysis based on nMDS dissimilarities of the phylogenetic distance of matrix data of the bacterial community of SML by symbiotic condition (control, bleached) and season (summer, winter).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left"/>
<th valign="top" align="center">Df</th>
<th valign="top" align="center">SumsOfSqs</th>
<th valign="top" align="center">MeanSqs</th>
<th valign="top" align="center">F. Model</th>
<th valign="top" align="center">R2</th>
<th valign="top" align="center">p-value</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Symbiotic condition</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">0.22208</td>
<td valign="top" align="center">0.111038</td>
<td valign="top" align="center">5.8289</td>
<td valign="top" align="center">0.40364</td>
<td valign="top" align="center">0.001 **</td>
</tr>
<tr>
<td valign="top" align="left">Season</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">0.06142</td>
<td valign="top" align="center">0.061416</td>
<td valign="top" align="center">3.2240</td>
<td valign="top" align="center">0.11163</td>
<td valign="top" align="center">0.017 *</td>
</tr>
<tr>
<td valign="top" align="left">Residuals</td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">0.26669</td>
<td valign="top" align="center">0.019050</td>
<td valign="top" align="center"/>
<td valign="top" align="center">0.48473</td>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left">Total</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">0.55019</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1.00000</td>
<td valign="top" align="center"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Significance codes: 0.001 &#x2018;**&#x2019; 0.01 &#x2018;*&#x2019;.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>
<italic>Cassiopea xamachana</italic> jellyfish naturally harbor symbiotic algae and associate with a surface bacterial community. We have studied this bacterial community by comparing symbiotic and bleached medusas in two seasons. Bleached medusas were obtained by additions of a labile sugar mix (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>) (<xref ref-type="bibr" rid="B68">Pogoreutz et&#xa0;al., 2017</xref>). The disruption of the symbiotic relationship in corals by increased organic carbon load is well established, including the expression of bacterial virulence genes and the formation of a hypoxic layer on the coral surface (<xref ref-type="bibr" rid="B87">Vega-Thurber et&#xa0;al., 2009</xref>). Elevated levels of dissolved organic carbon (DOC) (e. g. 25 mg L<sup>-1</sup>) have also been shown to accelerate bacterial growth rates associated with the SML of corals, potentially disrupting the balance of the microbial community (<xref ref-type="bibr" rid="B40">Kline et&#xa0;al., 2006</xref>). However, an experimental study showed that the bacterial community from coral fragments treated with enriched DOC levels (e. g. 10 mg L<sup>-1</sup>), remained stable after 28 days, did not show an increase in virulent bacteria, but caused bleaching of the coral fragments (<xref ref-type="bibr" rid="B68">Pogoreutz et&#xa0;al., 2017</xref>); these authors also observed the proliferation of diazotrophs. By using a lower concentration of DOC (0.3 mg L<sup>-1</sup>) we also induced bleaching of the jellyfish but perhaps with milder effects over the SML-associated bacterial community (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). It is not clear if moderate additions of labile carbon can promote the abundance of specific bacterial groups that may lead to changes in key members of this community (<xref ref-type="bibr" rid="B40">Kline et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B87">Vega-Thurber et&#xa0;al., 2009</xref>). For example, <italic>Vibrio</italic> species highly increase their abundance during coral bleaching events and become dominant (<xref ref-type="bibr" rid="B8">Bourne et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B85">Tout et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B53">McDevitt-Irwin et&#xa0;al., 2017</xref>), possibly due to a reduction of the antibiotic activity of bacteria found in the mucus of corals (<xref ref-type="bibr" rid="B71">Ritchie, 2006</xref>), and the ability of <italic>Vibrio</italic> to utilize a wide variety of sugars (<xref ref-type="bibr" rid="B45">Lee et&#xa0;al., 2016</xref>). Also, a study of the jellyfish <italic>Aurelia aurita</italic> reported an increase in Vibrionaceae bacteria at the end of the jellyfish bloom (<xref ref-type="bibr" rid="B41">Kramar et&#xa0;al., 2019</xref>). Further, bacterial groups associated with corals that potentially fix nitrogen (diazotrophs) are common and diverse. These may include Cyanobacteria, Alphaproteobacteria, and Deltaproteobacteria species (<xref ref-type="bibr" rid="B65">Olson et&#xa0;al., 2009</xref>). Although our results showed the occurrence of these bacteria, to better distinguish diazotrophs a specific study of nifH genes would have been necessary, considering that such genes correlate with the presence of algal symbionts (<xref ref-type="bibr" rid="B65">Olson et&#xa0;al., 2009</xref>).</p>
<p>Bleached medusas showed a lower diversity of bacterial taxa (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>), consistent with reports in stressed corals (<xref ref-type="bibr" rid="B53">McDevitt-Irwin et&#xa0;al., 2017</xref>). Medusas sampled during the summer showed a decrease of bacterial diversity after 28 days of incubation but during winter, the bacterial diversity of medusas remained without significant change over time (<xref ref-type="fig" rid="f3">
<bold>Figures 3</bold>
</xref>, <xref ref-type="fig" rid="f4">
<bold>4</bold>
</xref>). This contrasts with results reported by <xref ref-type="bibr" rid="B68">Pogoreutz et&#xa0;al. (2017)</xref> in corals exposed to high DOC, where they observed an overall decrease of bacterial diversity over time. Our results indicated the dominance of Gammaproteobacteria, Bacteroidia, and Alphaproteobacteria in all mucus samples (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref>). Jellyfish species from Indonesia, like <italic>Mastigias papua</italic> and <italic>Tripedalia cystophora</italic>, were also characterized by the higher abundance of Gammaproteobacteria class in bleached medusas and the abundant <italic>Endozoicomonas</italic> genus (<xref ref-type="bibr" rid="B16">Cleary et&#xa0;al., 2016</xref>). However, <italic>Rhizosotma pulmo</italic>, an endemic and common jellyfish of the Mediterranean Sea, has a completely different bacterial community to the one we observed in <italic>C. xamachana</italic>, even at the Phylum level (<xref ref-type="bibr" rid="B16">Cleary et&#xa0;al., 2016</xref>). <xref ref-type="bibr" rid="B38">Kelly et&#xa0;al. (2014)</xref> found that algae-dominated coral reefs from the Pacific, correlate with higher abundances of Gammaproteobacteria (such as Alteromonadales, Psuedomonadales, and Vibrionales), Betaproteobacteria, and Bacteriodetes; while reefs with high coral cover, correlate with higher abundances of Alphaproteobacteria (such as Rhodobacteriales and Sphongomonadales). Similar results have been obtained for symbiotic and non-symbiotic reef invertebrates, the former hosting Gammaproteobacteria and the latter Alphaproteobacteria (<xref ref-type="bibr" rid="B7">Bourne et&#xa0;al., 2013</xref>). These same bacterial classes have been identified in the gastric cavity of other non-symbiotic marine jellyfish and have been reported with potential in bioremediation, the degradation of polycyclic aromatic hydrocarbons, and the synthesis of antimicrobial compounds (<xref ref-type="bibr" rid="B83">Tinta et&#xa0;al., 2019</xref>).</p>
<p>In the present study, the initial abundance of <italic>Endozoicomonas</italic> (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>) was consistent with previous studies that report a high frequency of this genus and with the highest abundance among reef-forming corals (<xref ref-type="bibr" rid="B4">Bayer et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B25">Glasl et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B59">Neave et&#xa0;al., 2017a</xref>; <xref ref-type="bibr" rid="B68">Pogoreutz et&#xa0;al., 2017</xref>). However, <xref ref-type="bibr" rid="B81">Shiu et&#xa0;al. (2020)</xref> indicated that the relative abundance of <italic>Endozoicomonas</italic> usually decreases with heat-induced coral bleaching and perhaps positively correlates with Symbiodiniaceae abundance. It remains unclear whether this phenomenon of decreased <italic>Endozoicomonas</italic> abundance is caused by temperature stress or a decreased abundance of Symbiodiniaceae. In this respect, our results also suggest a correlation of <italic>Endozoicomonas</italic> with the presence of symbionts, and in the absence of heat stress. Additionally, <italic>Endozoicomonas</italic> has been recognized as an important, common bacterial genus, extremely flexible and diverse, associated with a high variety of marine organisms (<xref ref-type="bibr" rid="B57">Morrow et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B21">Forget and Juniper, 2013</xref>; <xref ref-type="bibr" rid="B36">Katharios et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B60">Neave et&#xa0;al., 2017b</xref>). Even though their role is not clearly defined yet, it has been proposed that some of their functions are related to nutrient acquisition and recycling of carbon and nitrogen (<xref ref-type="bibr" rid="B56">Morrow et&#xa0;al., 2015</xref>), antibiotic production, and the structuring of the microbiota (<xref ref-type="bibr" rid="B4">Bayer et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B35">Jessen et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B77">Rua et&#xa0;al., 2014</xref>). <italic>Endozoicomonas</italic> has also been found in high abundances and associated with other non-symbiotic marine jellyfish, being considered for its possible application in biotechnology and as a candidate for studies in probiotic applications (<xref ref-type="bibr" rid="B50">Mansson et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B18">Deering et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B88">Viver et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B83">Tinta et&#xa0;al., 2019</xref>).</p>
<p>The experimental bleaching of <italic>C. xamachana</italic> was difficult to achieve. We tried different bleaching methods (low temperature, menthol, DCMU addition) with poor success; medusas either lost a considerable amount of mass or died. The addition of sugars successfully caused the loss of algal symbionts and, even though the animals lost mass (&#x2248; 30%), they were kept alive and active. Sugar addition has the downside of altering the associated bacterial community, increasing diazotroph abundance (<xref ref-type="bibr" rid="B68">Pogoreutz et&#xa0;al., 2017</xref>), which we may have noted as an increase in the relative abundance of <italic>Vibrio</italic> (<xref ref-type="fig" rid="f4">
<bold>Figures 4</bold>
</xref>, <xref ref-type="fig" rid="f5">
<bold>5</bold>
</xref>). However, the relative abundance of <italic>Vibrio</italic> also increases with environmental deterioration and bleaching (<xref ref-type="bibr" rid="B87">Vega-Thurber et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B38">Kelly et&#xa0;al., 2014</xref>). A different bleaching method could help distinguish between these two factors (lack of symbionts and sugar addition) but is methodologically challenging. Considering that (1) we used a low sugar concentration for the experimental bleaching of the medusas, and (2) our results showed a significant effect of the loss of symbionts on the associated bacterial community, we may suggest it is plausible that algal symbionts may influence the structuring of the associated bacterial community.</p>
<p>The bacterial community of medusas like <italic>C. xamachana</italic> and other symbiotic model organisms has only begun to be studied over the past few years. Some studies have attempted to demonstrate cooperation between the associated microorganisms, and that the host may be able to select them (<xref ref-type="bibr" rid="B22">Fraune et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B30">Har et&#xa0;al., 2015</xref>). In our study the bleaching stress was unavoidable but there is still a lack of experimental evidence linking specific factors and the increase of <italic>Vibrio</italic> during bleaching. Overall, studies about the functional capabilities of the bacterial community of <italic>C. xamachana</italic>, can help us identify specific roles of certain members of this community that change in response to a loss of symbionts. Similar studies have identified other dominant families like Moraxellaceae and Pseudomonadaceae in <italic>C. xamachana</italic> when the nitrogen conditions are not limiting for the algal symbiont (<xref ref-type="bibr" rid="B75">R&#xf6;thig et&#xa0;al., 2021</xref>). The associated bacteria participate in the elimination of dissolved inorganic nitrogen (DIN) to overcome the nitrogen limitation of the symbiotic algae, a mechanism that has been proposed to help stabilize the host-algae relationship (<xref ref-type="bibr" rid="B75">R&#xf6;thig et&#xa0;al., 2021</xref>). However, functional studies of bacterial members will further help understand how biological factors, like alterations of the algal symbionts, may interact with this community and the key role of the photosynthetic activity of Symbiodiniaceae in the maintenance of the bacterial community, as previously reported (<xref ref-type="bibr" rid="B47">Littman et&#xa0;al., 2010</xref>).</p>
<p>Some bacterial members in the mucus in <italic>C. xamachana</italic> were enriched for specific taxa at each season (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). Studies confirm that seasonal fluctuations include changes in the physiology of the associated host, in the months of low sea temperatures (winter); it has been documented those corals such as <italic>Astrangia poculata</italic> decrease their metabolic functions, retract their polyps, and feed less, losing biomass in consequence (<xref ref-type="bibr" rid="B27">Grace, 2017</xref>). As temperatures increase, the metabolic activity of the holobiont resumes, as occurs in tropical corals (<xref ref-type="bibr" rid="B58">Mouchka et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B96">Zaneveld et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B80">Sharp et&#xa0;al., 2017</xref>). In summer, the coral holobiont consumes more food and possibly supplies more substrates that promote bacterial growth following a restructuring of the bacterial members (<xref ref-type="bibr" rid="B11">Burmester et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B27">Grace, 2017</xref>). The variation in certain bacterial groups by seasonality suggests that the bacterial communities undergo a succession, that is, changes in the bacterial community can occur during the colder winter months, followed by a restructuring of the bacterial community in summer. Lastly, the genetic variation of the host may also play a role. According to several studies (<xref ref-type="bibr" rid="B2">Arai, 2001</xref>; <xref ref-type="bibr" rid="B34">Holland et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B3">Arai et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B63">Ohdera et&#xa0;al., 2018</xref>) molecular phylogenetic analyses indicate individuals of <italic>Cassiopea</italic> analyzed from the same geographic area corresponding with different clades.</p>
</sec>
<sec id="s5" sec-type="conclusions">
<title>Conclusions</title>
<p>The addition of sugars was confirmed to have considerable potential as a method for rapid and effective bleaching in <italic>C. xamachana</italic>. This method can broaden the study of symbiont-related questions like carbon metabolism and limitation, dissociation of host and algae, conditions for reestablishing this relationship, or capacities for symbiont cooperation. <italic>Endozoicomonas</italic>, <italic>Tenacibaculum</italic>, and 21other bacterial genera were abundant in medusas at day-0; however, it is not clear if DOC addition, symbiont loss, or both, were significant in provoking the shift of the bacterial community in the bleached condition, increasing the abundance of <italic>Vibrio</italic>. Seasonal fluctuations did not cause significant variations in dominant bacterial members; such changes were better associated with symbiont presence. However, given the low number of replicates we used, and the natural variation of the bacteria associated with the medusae, probably also dependent on a genetic variation of the host, more studies will be needed to ascertain this claim. At the class level, the bacteria in the mucus of <italic>C. xamachana</italic> were similar to bacterial classes found in other tropical, symbiotic Rhizostomeae jellyfish, in the model organism <italic>Exaiptasia</italic> anemone, and in reef-building corals, mainly dominated by Gammaproteobacteria and Alphaproteobacteria. Future studies with this model organism can enlighten the role of symbionts in driving the stability of the associated bacterial community. Such studies may include seasonal fluctuations and bleaching events, triggered by seawater temperature, nutrient levels, and climate change, all associated with diseases and mortality in symbiotic corals. Also, studies in other regions where <italic>C. xamachana</italic> distributes, can help us identify stable and functional associations of bacteria that may contribute to the fitness of this jellyfish.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref> and the NCBI (<uri xlink:href="https://www.ncbi.nlm.nih.gov/">https://www.ncbi.nlm.nih.gov/</uri>) under accession no. PRJNA810909. Further inquiries can be directed to the corresponding author/s.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>NC, PT contributed to the conception and design of the study. NC, DC-G organized the databases. NC, DC-G performed the statistical analysis. NC wrote the first draft of the manuscript. PT, JG-M wrote and edited sections of the manuscript. All authors contributed to manuscript revision, read, and approved the submitted version.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by PAPIIT-DGAPA-UNAM [grant IN204318] to PET. ICML-UNAM provided funds for open access publication fees.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>We thank the support of Posgrado en Ciencias del Mar y Limnolog&#xed;a, UNAM, and a scholarship to NC from CONACYT [CVU 544689].</p>
</ack>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2022.879184/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2022.879184/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.pdf" id="SM1" mimetype="application/pdf"/>
<supplementary-material xlink:href="Table_1.xlsx" id="ST1" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
<supplementary-material xlink:href="Table_2.xlsx" id="ST2" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
<supplementary-material xlink:href="Table_3.xlsx" id="ST3" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
<supplementary-material xlink:href="Table_4.xlsx" id="ST4" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aljbour</surname> <given-names>S. M.</given-names>
</name>
<name>
<surname>Zimmer</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Al-Horani</surname> <given-names>F. A.</given-names>
</name>
<name>
<surname>Kunzmann</surname> <given-names>A.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Metabolic and Oxidative Stress Responses of the Jellyfish <italic>Cassiopea</italic> Sp. To Changes in Seawater Temperature</article-title>. <source>J. Sea Res.</source> <volume>145</volume>, <fpage>1</fpage>&#x2013;<lpage>7</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.seares.2018.12.002</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Arai</surname> <given-names>M. N.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>Pelagic Coelenterates and Eutrophication: A Review</article-title>. <source>Hydrobiologia</source> <volume>451</volume>, <fpage>69</fpage>&#x2013;<lpage>87</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1023/A:1011840123140</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Arai</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Gotoh</surname> <given-names>R. O.</given-names>
</name>
<name>
<surname>Yokoyama</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Sato</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Okuizumi</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Hanzawa</surname> <given-names>N.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Phylogenetic Relationships and Morphological Variations of Upside-Down Jellyfishes, <italic>Cassiopea</italic> Spp. Inhabiting Palau Island</article-title>. <source>Biogeography</source> <volume>19</volume>, <fpage>133</fpage>&#x2013;<lpage>141</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.11358/biogeo.19.133</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bayer</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Arif</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Ferrier-Page&#x300;s</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Zoccola</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Aranda-Lastra</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Voolstra</surname> <given-names>C. R.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Bacteria of the Genus <italic>Endozoicomonas</italic> Dominate the Microbiome of the Mediterranean Gorgonian Coral <italic>Eunicella Cavolini</italic>
</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>479</volume>, <fpage>75</fpage>&#x2013;<lpage>84</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps10197</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bolyen</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Rideout</surname> <given-names>J. R.</given-names>
</name>
<name>
<surname>Dillon</surname> <given-names>M. R.</given-names>
</name>
<name>
<surname>Bokulich</surname> <given-names>N. A.</given-names>
</name>
<name>
<surname>Abnet</surname> <given-names>C. C.</given-names>
</name>
<name>
<surname>Al-Ghalith</surname> <given-names>G. A.</given-names>
</name>
<etal/>
</person-group>. (<year>2019</year>). <article-title>Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2</article-title>. <source>Nat. Biotechnol.</source> <volume>37</volume>, <fpage>852</fpage>&#x2013;<lpage>857</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41587-019-0209-9</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bosch</surname> <given-names>T. C.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Cnidarian-Microbe Interactions and the Origin of Innate Immunity in Metazoans</article-title>. <source>Annu. Rev. Microbiol.</source> <volume>67</volume>, <fpage>499</fpage>&#x2013;<lpage>518</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1146/annurev-micro-092412-155626</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bourne</surname> <given-names>D. G.</given-names>
</name>
<name>
<surname>Dennis</surname> <given-names>P. G.</given-names>
</name>
<name>
<surname>Uthicke</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Soo</surname> <given-names>R. M.</given-names>
</name>
<name>
<surname>Tyson</surname> <given-names>G. W.</given-names>
</name>
<name>
<surname>Webster</surname> <given-names>N.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Coral Reef Invertebrate Microbiomes Correlate With the Presence of Photosymbionts</article-title>. <source>ISME J.</source> <volume>7</volume>, <fpage>1452</fpage>&#x2013;<lpage>1458</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2012.172</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bourne</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Iida</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Uthicke</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Smith-Keune</surname> <given-names>C.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Changes in Coral-Associated Microbial Communities During a Bleaching Event</article-title>. <source>ISME J.</source> <volume>2</volume>, <fpage>350</fpage>&#x2013;<lpage>363</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2007.112</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bourne</surname> <given-names>D. G.</given-names>
</name>
<name>
<surname>Morrow</surname> <given-names>K. M.</given-names>
</name>
<name>
<surname>Webster</surname> <given-names>N. S.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Insights Into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems</article-title>. <source>Annu. Rev. Microbiol.</source> <volume>70</volume>, <fpage>317</fpage>&#x2013;<lpage>340</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1146/annurev-micro-102215-095440</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Brown</surname> <given-names>B. E.</given-names>
</name>
<name>
<surname>Bythell</surname> <given-names>J. C.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>Perspectives on Mucus Secretion in Reef Corals</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>296</volume>, <fpage>291</fpage>&#x2013;<lpage>309</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps296291</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Burmester</surname> <given-names>E. M.</given-names>
</name>
<name>
<surname>Finnerty</surname> <given-names>J. R.</given-names>
</name>
<name>
<surname>Kaufman</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Rotjan</surname> <given-names>R. D.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Temperature and Symbiosis Affect Lesion Recovery in Experimentally Wounded, Facultatively Symbiotic Temperate Corals</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>570</volume>, <fpage>87</fpage>&#x2013;<lpage>99</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps12114</pub-id>
</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bythell</surname> <given-names>J. C.</given-names>
</name>
<name>
<surname>Wild</surname> <given-names>C.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Biology and Ecology of Coral Mucus Release</article-title>. <source>J. Exp. Mar. Biol. Ecol.</source> <volume>408</volume>, <fpage>88</fpage>&#x2013;<lpage>93</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jembe.2011.07.028</pub-id>
</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Callahan</surname> <given-names>B. J.</given-names>
</name>
<name>
<surname>McMurdie</surname> <given-names>P. J.</given-names>
</name>
<name>
<surname>Rosen</surname> <given-names>M. J.</given-names>
</name>
<name>
<surname>Han</surname> <given-names>A. W.</given-names>
</name>
<name>
<surname>Johnson</surname> <given-names>A. M. J. A.</given-names>
</name>
<name>
<surname>Holmes</surname> <given-names>S. P.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>DADA2: High Resolution Sample Inference From Illumina Amplicon Data</article-title>. <source>Nat. Methods</source> <volume>13</volume>, <fpage>581</fpage>&#x2013;<lpage>583</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nmeth.3869</pub-id>
</citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Caporaso</surname> <given-names>J. G.</given-names>
</name>
<name>
<surname>Kuczynski</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Stombaugh</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Bittinger</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Bushman</surname> <given-names>F. D.</given-names>
</name>
<name>
<surname>Costello</surname> <given-names>E. K.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>QIIME Allows Analysis of High-Throughput Community Sequencing Data</article-title>. <source>Nat. Methods</source> <volume>7</volume>, <fpage>335</fpage>&#x2013;<lpage>336</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nmeth.f.303</pub-id>
</citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Carlos</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Torres</surname> <given-names>T. T.</given-names>
</name>
<name>
<surname>Ottoboni</surname> <given-names>L. M. M.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Bacterial Communities and Species-Specific Associations With the Mucus of Brazilian Coral Species</article-title>. <source>Sci. Rep.</source> <volume>3</volume>, <elocation-id>1624</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/srep01624</pub-id>
</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cleary</surname> <given-names>D. R.</given-names>
</name>
<name>
<surname>Becking</surname> <given-names>L. E.</given-names>
</name>
<name>
<surname>Pol&#xf3;nia</surname> <given-names>A. M.</given-names>
</name>
<name>
<surname>Freitas</surname> <given-names>R. M.</given-names>
</name>
<name>
<surname>Gomes</surname> <given-names>N. M.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Jellyfish Associated Bacterial Communities and Bacterioplankton in Indonesian Marine Lakes</article-title>. <source>FEMS Microbiol. Ecol.</source> <volume>92</volume>, <fpage>1</fpage>&#x2013;<lpage>14</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/femsec/fiw064</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Colley</surname> <given-names>N. J.</given-names>
</name>
<name>
<surname>Trench</surname> <given-names>R. K.</given-names>
</name>
</person-group> (<year>1983</year>). <article-title>Selectivity in Phagocytosis and Persistence of Symbiotic Algae by the Scyphistoma Stage of the Jellyfish <italic>Cassiopea Xamachana</italic>
</article-title>. <source>Proc. R. Soc. London B</source> <volume>219</volume>, <fpage>61</fpage>&#x2013;<lpage>82</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1098/rspb.1983.0059</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Deering</surname> <given-names>R. W.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Sun</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Ma</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Dubert</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Barja</surname> <given-names>J. L.</given-names>
</name>
<etal/>
</person-group>. (<year>2016</year>). <article-title>N-Acyl Dehydrotyrosines, Tyrosinase Inhibitors From the Marine Bacterium Thalassotalea Sp</article-title>. <source>J. Nat. Prod.</source> <volume>79</volume>, <fpage>447</fpage>&#x2013;<lpage>450</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1021/acs.jnatprod.5b00972</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Djeghri</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Pondaven</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Stibor</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Dawson</surname> <given-names>M. N.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Review of the Diversity, Traits, and Ecology of Zooxanthellate Jellyfishes</article-title>. <source>Mar. Biol.</source> <volume>166</volume>, <fpage>147</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s00227-019-3581-6</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fitt</surname> <given-names>W. K.</given-names>
</name>
<name>
<surname>Costley</surname> <given-names>K.</given-names>
</name>
</person-group> (<year>1998</year>). <article-title>The Role of Temperature in Survival of the Polyp Stage of the Tropical Rhizostome Jellyfish <italic>Cassiopea Xamachana</italic>
</article-title>. <source>J. Exp. Mar. Biol. Ecol.</source> <volume>222</volume>, <fpage>79</fpage>&#x2013;<lpage>91</lpage>. doi: <pub-id pub-id-type="doi">10.1016/S0022-0981(97)00139-1</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Forget</surname> <given-names>N. L.</given-names>
</name>
<name>
<surname>Juniper</surname> <given-names>S. K.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Free-Living Bacterial Communities Associated With Tubeworm (<italic>Ridgeia Piscesae</italic>) Aggregations in Contrasting Diffuse Flow Hydrothermal Vent Habitats at the Main Endeavour Field, Juan De Fuca Ridge</article-title>. <source>Microbiol. Open</source> <volume>2</volume>, <fpage>259</fpage>&#x2013;<lpage>275</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/mbo3.70</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fraune</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Anton-Erxleben</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Augustin</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Franzenburg</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Knop</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Schr&#xf6;der</surname> <given-names>K.</given-names>
</name>
<etal/>
</person-group>. (<year>2015</year>). <article-title>Bacteria-Bacteria Interactions Within the Microbiota of the Ancestral Metazoan <italic>Hydra</italic> Contribute to Fungal Resistance</article-title>. <source>ISME J.</source> <volume>9</volume>, <fpage>1543</fpage>&#x2013;<lpage>1556</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2014.239</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Freeman</surname> <given-names>C. J.</given-names>
</name>
<name>
<surname>Stoner</surname> <given-names>E. W.</given-names>
</name>
<name>
<surname>Easson</surname> <given-names>C. G.</given-names>
</name>
<name>
<surname>Matterson</surname> <given-names>K. O.</given-names>
</name>
<name>
<surname>Baker</surname> <given-names>D. M.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Symbiont Carbon and Nitrogen Assimilation in the <italic>Cassiopea-Symbiodinium</italic> Mutualism</article-title>. <source>Mar. Ecol. Pror. Ser.</source> <volume>544</volume>, <fpage>281</fpage>&#x2013;<lpage>286</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps11605</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Garrido</surname> <given-names>A. G.</given-names>
</name>
<name>
<surname>Machado</surname> <given-names>L. F.</given-names>
</name>
<name>
<surname>Zilberberg</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Assis</surname> <given-names>L. D. C.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Insights Into &#x2018;Symbiodiniaceae Phycosphere&#x2019; in a Coral Holobiont</article-title>. <source>Symbiosis</source> <volume>83</volume>, <fpage>25</fpage>&#x2013;<lpage>39</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s13199-020-00735-3</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Glasl</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Herndl</surname> <given-names>G. J.</given-names>
</name>
<name>
<surname>Frade</surname> <given-names>P. R.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>The Microbiome of Coral Surface Mucus has a Key Role in Mediating Holobiont Health and Survival Upon Disturbance</article-title>. <source>ISME J.</source> <volume>10</volume>, <fpage>2280</fpage>&#x2013;<lpage>2290</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2016.9</pub-id>
</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Goulet</surname> <given-names>T. L.</given-names>
</name>
<name>
<surname>Erill</surname> <given-names>I.</given-names>
</name>
<name>
<surname>Ascunce</surname> <given-names>M. S.</given-names>
</name>
<name>
<surname>Finley</surname> <given-names>S. J.</given-names>
</name>
<name>
<surname>Javan</surname> <given-names>G. T.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Conceptualization of the Holobiont Paradigm as It Pertains to Corals</article-title>. <source>Front. Physiol.</source> <volume>11</volume>, <elocation-id>566968</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fphys.2020.566968</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Grace</surname> <given-names>S.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Winter Quiescence, Growth Rate, and the Release From Competition in the Temperate Scleractinian Coral <italic>Astrangia Poculata</italic> (Ellis &amp; Solander 1786)</article-title>. <source>Northeast. Nat.</source> <volume>24</volume>, <fpage>119</fpage>&#x2013;<lpage>134</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1656/045.024.s715</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hansson</surname> <given-names>L. J.</given-names>
</name>
<name>
<surname>Norrman</surname> <given-names>B.</given-names>
</name>
</person-group> (<year>1995</year>). <article-title>Release of Dissolved Organic Carbon (DOC) by the Scyphozoan Jellyfish <italic>Aurelia Aurita</italic> and Its Potential Influence on the Production of Planktic Bacteria</article-title>. <source>Mar. Biol.</source> <volume>121</volume>, <fpage>527</fpage>&#x2013;<lpage>532</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/bf00349462</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hao</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Gerdts</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Holst</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Wichels</surname> <given-names>A.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Bacterial Communities Associated With Scyphomedusae at Helgoland Roads</article-title>. <source>Mar. Biodiv.</source> <volume>49</volume>, <fpage>1489</fpage>&#x2013;<lpage>1503</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s12526-018-0923-4</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Har</surname> <given-names>J. Y.</given-names>
</name>
<name>
<surname>Helbig</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Lim</surname> <given-names>J. H.</given-names>
</name>
<name>
<surname>Fernando</surname> <given-names>S. C.</given-names>
</name>
<name>
<surname>Reitzel</surname> <given-names>A. M.</given-names>
</name>
<name>
<surname>Penn</surname> <given-names>K.</given-names>
</name>
<etal/>
</person-group>. (<year>2015</year>). <article-title>Microbial Diversity and Activity in the <italic>Nematostella Vectensis</italic> Holobiont: Insights From 16S rRNA Gene Sequencing, Isolate Genomes, and a Pilot-Scale Survey of Gene Expression</article-title>. <source>Front. Microbiol.</source> <volume>6</volume>, <elocation-id>818</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2015.00818</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hernandez-Agreda</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Gates</surname> <given-names>R. D.</given-names>
</name>
<name>
<surname>Ainsworth</surname> <given-names>T. D.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Defining the Core Microbiome in Corals' Microbial Soup</article-title>. <source>Trends. Microbiol.</source> <volume>25</volume>, <fpage>125</fpage>&#x2013;<lpage>140</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.tim.2016.11.003</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hofmann</surname> <given-names>D. K.</given-names>
</name>
<name>
<surname>Fitt</surname> <given-names>W. K.</given-names>
</name>
<name>
<surname>Fleck</surname> <given-names>J.</given-names>
</name>
</person-group> (<year>1996</year>). <article-title>Checkpoints in the Life-Cycle of <italic>Cassiopea</italic> Spp.: Control of Metagenesis and Metamorphosis in a Tropical Jellyfish</article-title>. <source>Int. J. Dev. Biol.</source> <volume>40</volume>, <fpage>331</fpage>&#x2013;<lpage>338</lpage>.</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hofmann</surname> <given-names>D. K.</given-names>
</name>
<name>
<surname>Kremer</surname> <given-names>B. P.</given-names>
</name>
</person-group> (<year>1981</year>). <article-title>Carbon Metabolism and Strobilation in <italic>Cassiopea Andromeda</italic> (Cnidaria: Scyphozoa): Significance of Endosymbiotic Dinoflagellates</article-title>. <source>Mar. Biol.</source> <volume>65</volume>, <fpage>25</fpage>&#x2013;<lpage>33</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/BF00397064</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Holland</surname> <given-names>B. S.</given-names>
</name>
<name>
<surname>Dawson</surname> <given-names>M. N.</given-names>
</name>
<name>
<surname>Crow</surname> <given-names>G. L.</given-names>
</name>
<name>
<surname>Hofmann</surname> <given-names>D. K.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Global Phylogeography of <italic>Cassiopea</italic> (Scyphozoa: Rhizostomeae): Molecular Evidence for Cryptic Species and Multiple Invasions of the Hawaiian Islands</article-title>. <source>Mar. Biol.</source> <volume>145</volume>, <fpage>1119</fpage>&#x2013;<lpage>1128</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s00227-004-1409-4</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jessen</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Villa Lizcano</surname> <given-names>J. F.</given-names>
</name>
<name>
<surname>Bayer</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Roder</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Aranda</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Wild</surname> <given-names>C.</given-names>
</name>
<etal/>
</person-group>. (<year>2013</year>). <article-title>
<italic>In-Situ</italic> Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral <italic>Acropora Hemprichii</italic>
</article-title>. <source>PLos One</source> <volume>8</volume>, <elocation-id>e62091</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0062091</pub-id>
</citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Katharios</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Seth-Smith</surname> <given-names>H. M. B.</given-names>
</name>
<name>
<surname>Fehr</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Mateos</surname> <given-names>J. M.</given-names>
</name>
<name>
<surname>Qi</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Richter</surname> <given-names>D.</given-names>
</name>
<etal/>
</person-group>. (<year>2015</year>). <article-title>Environmental Marine Pathogen Isolation Using Mesocosm Culture of Sharpsnout Seabream: Striking Genomic and Morphological Features of Novel Endozoicomonas Sp</article-title>. <source>Sci. Rep.</source> <volume>5</volume>, <elocation-id>17609</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/srep17609</pub-id>
</citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Katoh</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Standley</surname> <given-names>D. M.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>MAFFT Multiple Sequence Alignment Software Versi&#xf3;n 7: Improvements in Performance and Usability</article-title>. <source>Mol. Biol. Evol.</source> <volume>30</volume>, <fpage>772</fpage>&#x2013;<lpage>780</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/molbev/mst010</pub-id>
</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kelly</surname> <given-names>L. W.</given-names>
</name>
<name>
<surname>Williams</surname> <given-names>G. J.</given-names>
</name>
<name>
<surname>Barott</surname> <given-names>K. L.</given-names>
</name>
<name>
<surname>Carlson</surname> <given-names>C. A.</given-names>
</name>
<name>
<surname>Dinsdale</surname> <given-names>E. A.</given-names>
</name>
<name>
<surname>Edwards</surname> <given-names>R. A.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>). <article-title>Local Genomic Adaptation of Coral Reef-Associated Microbiomes to Gradients of Natural Variability and Anthropogenic Stressors</article-title>. <source>Proc. Natl. Acad. Sci. U. S. A.</source> <volume>111</volume>, <fpage>10227</fpage>&#x2013;<lpage>10232</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1073/pnas.1403319111</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Klindworth</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Pruesse</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Schweer</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Peplies</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Quast</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Horn</surname> <given-names>M.</given-names>
</name>
<etal/>
</person-group>. (<year>2013</year>). <article-title>Evaluation of General 16S Ribosomal RNA Gene PCR Primers for Classical and Next-Generation Sequencing-Based Diversity Studies</article-title>. <source>Nucl. Acid Res.</source> <volume>41</volume>, <elocation-id>e1</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/nar/gks808</pub-id>
</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kline</surname> <given-names>D. I.</given-names>
</name>
<name>
<surname>Kuntz</surname> <given-names>N. M.</given-names>
</name>
<name>
<surname>Breitbart</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Knowlton</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Rowher</surname> <given-names>F.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>314</volume>, <fpage>119</fpage>&#x2013;<lpage>125</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps314119</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kramar</surname> <given-names>M. K.</given-names>
</name>
<name>
<surname>Tinta</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Lucic</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Malej</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Turk</surname> <given-names>V.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Bacteria Associated With Moon Jellyfish During Bloom and Post-Bloom Periods in the Gulf of Trieste (Northern Adriatic)</article-title>. <source>PLos One</source> <volume>14</volume>, <elocation-id>e0198056</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0198056</pub-id>
</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Krediet</surname> <given-names>C. J.</given-names>
</name>
<name>
<surname>Ritchie</surname> <given-names>K. B.</given-names>
</name>
<name>
<surname>Alagely</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Teplitski</surname> <given-names>M.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Members of Native Coral Microbiota Inhibit Glycosidases and Thwart Colonization of Coral Mucus by an Opportunistic Pathogen</article-title>. <source>ISME J.</source> <volume>7</volume>, <fpage>980</fpage>&#x2013;<lpage>990</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2012.164</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Lampert</surname> <given-names>K. P.</given-names>
</name>
</person-group> (<year>2016</year>). &#x201c;<article-title>Cassiopea and Its Zooxanthellae</article-title>,&#x201d; in <source>The Cnidaria, Past, Present and Future: The World of Medusa and Her Sisters</source>. Eds. <person-group person-group-type="editor">
<name>
<surname>Goffredo</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Dubinsky</surname> <given-names>Z.</given-names>
</name>
</person-group> (<publisher-loc>Switzerland</publisher-loc>: <publisher-name>Springer International Publishing</publisher-name>), <fpage>415</fpage>&#x2013;<lpage>423</lpage>.</citation>
</ref>
<ref id="B44">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lampert</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Kelman</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Nitzan</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Dubinsky</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Behar</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Hill</surname> <given-names>R. T.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Phylogenetic Diversity of Bacteria Associated With the Mucus of Red Sea Corals</article-title>. <source>FEMS Microbiol. Ecol.</source> <volume>64</volume>, <fpage>187</fpage>&#x2013;<lpage>198</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/j.1574-6941.2008.00458.x</pub-id>
</citation>
</ref>
<ref id="B45">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lee</surname> <given-names>S. T. M.</given-names>
</name>
<name>
<surname>Davy</surname> <given-names>S. K.</given-names>
</name>
<name>
<surname>Tang</surname> <given-names>S. L.</given-names>
</name>
<name>
<surname>Kench</surname> <given-names>P. S.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Mucus Sugar Content Shapes the Bacterial Community Structure in Thermally Stressed <italic>Acropora Muricata</italic>
</article-title>. <source>Front. Microbiol.</source> <volume>7</volume>, <elocation-id>371</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2016.00371</pub-id>
</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lesser</surname> <given-names>M. P.</given-names>
</name>
<name>
<surname>Mazel</surname> <given-names>C. H.</given-names>
</name>
<name>
<surname>Gorbunov</surname> <given-names>M. Y.</given-names>
</name>
<name>
<surname>Falkowski</surname> <given-names>P. G.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Discovery of Symbiotic Nitrogen-Fixing Cyanobacteria in Corals</article-title>. <source>Science</source> <volume>305</volume>, <fpage>997</fpage>&#x2013;<lpage>1000</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1126/science.1099128</pub-id>
</citation>
</ref>
<ref id="B47">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Littman</surname> <given-names>R. A.</given-names>
</name>
<name>
<surname>Bourne</surname> <given-names>D. G.</given-names>
</name>
<name>
<surname>Willis</surname> <given-names>B. L.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Responses of Coral-Associated Bacterial Communities to Heat Stress Differ With <italic>Symbiodinium</italic> Type on the Same Coral Host</article-title>. <source>Mol. Ecol.</source> <volume>19</volume>, <fpage>1978</fpage>&#x2013;<lpage>1990</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/j.1365-294X.2010.04620.x</pub-id>
</citation>
</ref>
<ref id="B48">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Littman</surname> <given-names>R. A.</given-names>
</name>
<name>
<surname>Willis</surname> <given-names>B. L.</given-names>
</name>
<name>
<surname>Bourne</surname> <given-names>D. G.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Metagenomic Analysis of the Coral Holobiont During a Natural Bleaching Event on the Great Barrier Reef</article-title>. <source>Environ. Microbiol. Rep.</source> <volume>3</volume>, <fpage>651</fpage>&#x2013;<lpage>660</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/j.1758-2229.2010.00234.x</pub-id>
</citation>
</ref>
<ref id="B49">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Maire</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Girvan</surname> <given-names>S. K.</given-names>
</name>
<name>
<surname>Barkla</surname> <given-names>S. E.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Intracellular Bacteria Are Common and Taxonomically Diverse in Cultured and <italic>in Hospite</italic> Algal Endosymbionts of Coral Reefs</article-title>. <source>ISME J.</source> <volume>15</volume>, <fpage>2028</fpage>&#x2013;<lpage>2042</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41396-021-00902-4</pub-id>
</citation>
</ref>
<ref id="B50">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mansson</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Gram</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Larsen</surname> <given-names>A.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Production of Bioactive Secondary Metabolites by Marine Vibrionaceae</article-title>. <source>Mar. Drugs</source> <volume>9</volume>, <fpage>1440</fpage>&#x2013;<lpage>1468</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/md9091440</pub-id>
</citation>
</ref>
<ref id="B51">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Matthews</surname> <given-names>J. L.</given-names>
</name>
<name>
<surname>Raina</surname> <given-names>J. B.</given-names>
</name>
<name>
<surname>Kahlke</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Seymour</surname> <given-names>J. R.</given-names>
</name>
<name>
<surname>van Oppen</surname> <given-names>M. J. H.</given-names>
</name>
<name>
<surname>Suggett</surname> <given-names>D. J.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Symbiodiniaceae-Bacteria Interactions: Rethinking Metabolite Exchange in Reef-Building Corals as Multi-Partner Metabolic Networks</article-title>. <source>Environ. Microbiol.</source> <volume>22</volume>, <fpage>1675</fpage>&#x2013;<lpage>1687</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/1462-2920.14918</pub-id>
</citation>
</ref>
<ref id="B52">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McCloskey</surname> <given-names>L. R.</given-names>
</name>
<name>
<surname>Muscatine</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Wilkerson</surname> <given-names>F. P.</given-names>
</name>
</person-group> (<year>1994</year>). <article-title>Daily Photosynthesis, Respiration, and Carbon Budgets in a Tropical Marine Jellyfish (<italic>Mastigias</italic> Sp.)</article-title>. <source>Mar. Biol.</source> <volume>119</volume>, <fpage>13</fpage>&#x2013;<lpage>22</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/BF00350101</pub-id>
</citation>
</ref>
<ref id="B53">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McDevitt-Irwin</surname> <given-names>J. M.</given-names>
</name>
<name>
<surname>Baum</surname> <given-names>J. K.</given-names>
</name>
<name>
<surname>Garren</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Vega Thurber</surname> <given-names>R. L.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Responses of Coral-Associated Bacterial Communities to Local and Global Stressors</article-title>. <source>Front. Mar. Sci.</source> <volume>4</volume>, <elocation-id>262</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmars.2017.00262</pub-id>
</citation>
</ref>
<ref id="B54">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McGill</surname> <given-names>C. J.</given-names>
</name>
<name>
<surname>Pomoroy</surname> <given-names>C. M.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Effects of Bleaching and Nutrient Supplementation on Wet Weight in the Jellyfish <italic>Cassiopea Xamachana</italic> (Bigelow) (Cnidaria: Scyphozoa)</article-title>. <source>Mar. Freshw. Behav. Physiol.</source> <volume>41</volume>, <fpage>179</fpage>&#x2013;<lpage>189</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1080/10236240802369899</pub-id>
</citation>
</ref>
<ref id="B55">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McMurdie</surname> <given-names>P. J.</given-names>
</name>
<name>
<surname>Holmes</surname> <given-names>S.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data</article-title>. <source>PLos One</source> <volume>8</volume>, <elocation-id>e61217</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0061217</pub-id>
</citation>
</ref>
<ref id="B56">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Morrow</surname> <given-names>K. M.</given-names>
</name>
<name>
<surname>Bourne</surname> <given-names>D. G.</given-names>
</name>
<name>
<surname>Humphrey</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Bott&#xe9;</surname> <given-names>E. S.</given-names>
</name>
<name>
<surname>Laffy</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Zaneveld</surname> <given-names>J.</given-names>
</name>
<etal/>
</person-group>. (<year>2015</year>). <article-title>Natural Volcanic CO<sub>2</sub> Seeps Reveal Future Trajectories for Host-Microbial Associations in Corals and Sponges</article-title>. <source>ISME J.</source> <volume>9</volume>, <fpage>894</fpage>&#x2013;<lpage>908</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2014.188</pub-id>
</citation>
</ref>
<ref id="B57">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Morrow</surname> <given-names>K. M.</given-names>
</name>
<name>
<surname>Moss</surname> <given-names>A. G.</given-names>
</name>
<name>
<surname>Chadwick</surname> <given-names>N. E.</given-names>
</name>
<name>
<surname>Liles</surname> <given-names>M. R.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability</article-title>. <source>Appl. Environ. Microb.</source> <volume>78</volume>, <fpage>6438</fpage>&#x2013;<lpage>6449</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/AEM.01162-12</pub-id>
</citation>
</ref>
<ref id="B58">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mouchka</surname> <given-names>M. E.</given-names>
</name>
<name>
<surname>Hewson</surname> <given-names>I.</given-names>
</name>
<name>
<surname>Harvell</surname> <given-names>I. D.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Coral-Associated Bacterial Assemblages: Current Knowledge and the Potential for Climate-Driven Impacts</article-title>. <source>Integr. Comp. Biol.</source> <volume>50</volume>, <fpage>662</fpage>&#x2013;<lpage>674</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/icb/icq061</pub-id>
</citation>
</ref>
<ref id="B59">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Neave</surname> <given-names>M. J.</given-names>
</name>
<name>
<surname>Michell</surname> <given-names>C. T.</given-names>
</name>
<name>
<surname>Apprill</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Voolstra</surname> <given-names>C. R.</given-names>
</name>
</person-group> (<year>2017</year>a). <article-title>
<italic>Endozoicomonas</italic> Genomes Reveal Functional Adaptation and Plasticity in Bacterial Strains Symbiotically Associated With Diverse Marine Hosts</article-title>. <source>Sci. Rep.</source> <volume>7</volume>, <elocation-id>40579</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/srep40579</pub-id>
</citation>
</ref>
<ref id="B60">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Neave</surname> <given-names>M. J.</given-names>
</name>
<name>
<surname>Rachmawati</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Xun</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Michell</surname> <given-names>C. T.</given-names>
</name>
<name>
<surname>Bourne</surname> <given-names>D. G.</given-names>
</name>
<name>
<surname>Aprill</surname> <given-names>A.</given-names>
</name>
<etal/>
</person-group>. (<year>2017</year>b). <article-title>Differential Specificity Between Closely Related Corals and Abundant <italic>Endozoicomonas</italic> Endosymbionts Across Global Scales</article-title>. <source>ISME J.</source> <volume>11</volume>, <fpage>186</fpage>&#x2013;<lpage>200</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2016.95</pub-id>
</citation>
</ref>
<ref id="B61">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Newkirk</surname> <given-names>C. R.</given-names>
</name>
<name>
<surname>Frazer</surname> <given-names>T. K.</given-names>
</name>
<name>
<surname>Martindale</surname> <given-names>M. Q.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Acquisition and Proliferation of Algal Symbionts in Bleached Polyps of the Upside-Down Jellyfish, <italic>Cassiopea Xamachana</italic>
</article-title>. <source>J. Exp. Mar. Biol. Ecol.</source> <volume>508</volume>, <fpage>44</fpage>&#x2013;<lpage>51</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jembe.2018.08.010</pub-id>
</citation>
</ref>
<ref id="B62">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Niggl</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Naumann</surname> <given-names>M. S.</given-names>
</name>
<name>
<surname>Struck</surname> <given-names>U.</given-names>
</name>
<name>
<surname>Manasrah</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Wild</surname> <given-names>C.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Organic Matter Release by the Benthic Upside-Down Jellyfish <italic>Cassiopea</italic> Sp. Fuels Pelagic Food Webs in Coral Reefs</article-title>. <source>J. Exp. Mar. Biol. Ecol.</source> <volume>384</volume>, <fpage>99</fpage>&#x2013;<lpage>106</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jembe.2010.01.011</pub-id>
</citation>
</ref>
<ref id="B63">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ohdera</surname> <given-names>A. H.</given-names>
</name>
<name>
<surname>Abrams</surname> <given-names>M. J.</given-names>
</name>
<name>
<surname>Ames</surname> <given-names>C. L.</given-names>
</name>
<name>
<surname>Baker</surname> <given-names>D. M.</given-names>
</name>
<name>
<surname>Suesc&#xfa;n-Bol&#xed;var</surname> <given-names>L. P.</given-names>
</name>
<name>
<surname>Collins</surname> <given-names>A. G.</given-names>
</name>
<etal/>
</person-group>. (<year>2018</year>). <article-title>Upside-Down But Headed in the Right Direction: Review of the Highly Versatile <italic>Cassiopea Xamachana</italic> System</article-title>. <source>Front. Ecol. Evol.</source> <volume>6</volume>, <elocation-id>35</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fevo.2018.00035</pub-id>
</citation>
</ref>
<ref id="B64">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Oksanen</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Kindt</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Legendre</surname> <given-names>P.</given-names>
</name>
<name>
<surname>O&#x2019;Hara</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Stevens</surname> <given-names>M. H. H.</given-names>
</name>
<name>
<surname>Oksanen</surname> <given-names>M. J.</given-names>
</name>
<etal/>
</person-group>. (<year>2007</year>). <article-title>The Vegan Package</article-title>. <source>Community Ecol. Package</source> <volume>10</volume> (<issue>631-637</issue>), <fpage>719</fpage>.</citation>
</ref>
<ref id="B65">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Olson</surname> <given-names>N. D.</given-names>
</name>
<name>
<surname>Ainsworth</surname> <given-names>T. D.</given-names>
</name>
<name>
<surname>Gates</surname> <given-names>R. D.</given-names>
</name>
<name>
<surname>Takabayashi</surname> <given-names>M.</given-names>
</name>
</person-group> (<year>2009</year>). <article-title>Diazotrophic Bacteria Associated With Hawaiian <italic>Montipora</italic> Corals: Diversity and Abundance in Correlation With Symbiotic Dinoflagellates</article-title>. <source>J. Exp. Mar. Biol. Ecol.</source> <volume>371</volume>, <fpage>140</fpage>&#x2013;<lpage>146</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jembe.2009.01.012</pub-id>
</citation>
</ref>
<ref id="B66">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Peng</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Hao</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Li</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Sun</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Zhao</surname> <given-names>J.</given-names>
</name>
<etal/>
</person-group>. (<year>2021</year>). <article-title>Bacterial Communities Associated With Four Blooming Scyphozoan Jellyfish: Potential Species-Specific Consequences for Marine Organisms and Human Health</article-title>. <source>Front. Microbiol.</source> <volume>12</volume>, <elocation-id>647089</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2021.647089</pub-id>
</citation>
</ref>
<ref id="B67">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pitt</surname> <given-names>K. A.</given-names>
</name>
<name>
<surname>Koop</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Rissik</surname> <given-names>D.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>Contrasting Contributions to Inorganic Nutrient Recycling by the Co-Occurring Jellyfishes, <italic>Catostylus Mosaicus</italic> and <italic>Phyllorhiza Punctata</italic> (Scyphozoa, Rhizostomeae)</article-title>. <source>J. Exp. Mar. Biol. Ecol.</source> <volume>315</volume>, <fpage>71</fpage>&#x2013;<lpage>86</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jembe.2004.09.007</pub-id>
</citation>
</ref>
<ref id="B68">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pogoreutz</surname> <given-names>C.</given-names>
</name>
<name>
<surname>R&#xe4;decker</surname> <given-names>N.</given-names>
</name>
<name>
<surname>C&#xe1;rdenas</surname> <given-names>A.</given-names>
</name>
<name>
<surname>G&#xe4;rdes</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Voolstra</surname> <given-names>C. R.</given-names>
</name>
<name>
<surname>Wild</surname> <given-names>C.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Sugar Enrichment Provides Evidence for a Role of Nitrogen Fixation in Coral Bleaching</article-title>. <source>Glob. Change Biol.</source> <volume>23</volume>, <fpage>3838</fpage>&#x2013;<lpage>3848</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/gcb.13695</pub-id>
</citation>
</ref>
<ref id="B69">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Price</surname> <given-names>M. N.</given-names>
</name>
<name>
<surname>Dehal</surname> <given-names>P. S.</given-names>
</name>
<name>
<surname>Arkin</surname> <given-names>A. P.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments</article-title>. <source>PLos One</source> <volume>5</volume>, <elocation-id>e9490</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0009490</pub-id>
</citation>
</ref>
<ref id="B70">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>R&#xe4;decker</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Pogoreutz</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Voolstra</surname> <given-names>C. R.</given-names>
</name>
<name>
<surname>Wiedenmann</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Wild</surname> <given-names>C.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Nitrogen Cycling in Corals: The Key to Understanding Holobiont Functioning</article-title>? <source>Trends Microbiol.</source> <volume>23</volume>, <fpage>490</fpage>&#x2013;<lpage>497</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.tim.2015.03.008</pub-id>
</citation>
</ref>
<ref id="B71">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ritchie</surname> <given-names>K. B.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Regulation of Microbial Populations by Coral Surface Mucus and Mucus -Associated Bacteria</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>322</volume>, <fpage>1</fpage>&#x2013;<lpage>14</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps322001</pub-id>
</citation>
</ref>
<ref id="B72">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rivera-Ortega</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Thom&#xe9;</surname> <given-names>P. E.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Contrasting Antibacterial Capabilities of the Surface Mucus Layer From Three Symbiotic Cnidarians</article-title>. <source>Front. Mar. Sci.</source> <volume>5</volume>, <elocation-id>392</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmars.2018.00392</pub-id>
</citation>
</ref>
<ref id="B73">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rognes</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Flouri</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Nichols</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Quince</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Mah&#xe9;</surname> <given-names>F.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>VSEARCH: A Versatile Open Source Tool for Metagenomics</article-title>. <source>PeerJ</source> <volume>4</volume>, <elocation-id>e2584</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.7717/peerj.2584</pub-id>
</citation>
</ref>
<ref id="B74">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rohwer</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Seguritan</surname> <given-names>V.</given-names>
</name>
<name>
<surname>Azam</surname> <given-names>F.</given-names>
</name>
<name>
<surname>Knowlton</surname> <given-names>N.</given-names>
</name>
</person-group> (<year>2002</year>). <article-title>Diversity and Distribution of Coral-Associated Bacteria</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>243</volume>, <fpage>1</fpage>&#x2013;<lpage>10</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3354/meps243001</pub-id>
</citation>
</ref>
<ref id="B75">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>R&#xf6;thig</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Puntin</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Wong</surname> <given-names>J. C. Y.</given-names>
</name>
<name>
<surname>Burain</surname> <given-names>A.</given-names>
</name>
<name>
<surname>McLeod</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Baker</surname> <given-names>D. M.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Holobiont Nitrogen Control and Its Potential for Eutrophication Resistance in an Obligate Photosymbiotic Jellyfish</article-title>. <source>Microbiome</source> <volume>9</volume>, <fpage>127</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s40168-021-01075-0</pub-id>
</citation>
</ref>
<ref id="B76">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>R&#xf6;thig</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Roik</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Yum</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Voolstra</surname> <given-names>C. R.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Distinct Bacterial Microbiomes Associate With the Deep-Sea Coral <italic>Eguchipsammia Fistula</italic> From the Red Sea and From Aquaria Settings</article-title>. <source>Front. Mar. Sci.</source> <volume>4</volume>, <elocation-id>259</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmars.2017.00259</pub-id>
</citation>
</ref>
<ref id="B77">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rua</surname> <given-names>C. P. J.</given-names>
</name>
<name>
<surname>Trindade-Silva</surname> <given-names>A. E.</given-names>
</name>
<name>
<surname>Appolinario</surname> <given-names>L. R.</given-names>
</name>
<name>
<surname>Venas</surname> <given-names>T. M.</given-names>
</name>
<name>
<surname>Garcia</surname> <given-names>G. D.</given-names>
</name>
<name>
<surname>Carvalho</surname> <given-names>L. S.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>). <article-title>Diversity and Antimicrobial Potential of Culturable Heterotrophic Bacteria Associated With the Endemic Marine Sponge <italic>Arenosclera Brasiliensis</italic>
</article-title>. <source>PeerJ</source> <volume>2</volume>, <elocation-id>e419</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.7717/peerj.419</pub-id>
</citation>
</ref>
<ref id="B78">
<citation citation-type="web">
<person-group person-group-type="author">
<collab>SAMMO</collab>
</person-group> (<year>2018-2019</year>) <source>Universidad Nacional Aut&#xf3;noma De M&#xe9;xico, Instituto De Ciencias Del Mar Y Limnolog&#xed;a, Servicio Acad&#xe9;mico De Monitoreo Meteorol&#xf3;gico Y Oceanogr&#xe1;fico, Puerto Morelos Q. Roo M&#xe9;xico</source>. Available at: <uri xlink:href="http://www.sammo.icmyl.unam.mx">www.sammo.icmyl.unam.mx</uri> (Accessed <access-date>15 October, 2021</access-date>).</citation>
</ref>
<ref id="B79">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Segata</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Izard</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Waldron</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Gevers</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Miropolsky</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Garret</surname> <given-names>W. S.</given-names>
</name>
<etal/>
</person-group>. (<year>2011</year>). <article-title>Metagenomic Biomarker Discovery and Explanation</article-title>. <source>Genome Biol.</source> <volume>12</volume>, <fpage>R60</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/gb-2011-12-6-r60</pub-id>
</citation>
</ref>
<ref id="B80">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sharp</surname> <given-names>K. H.</given-names>
</name>
<name>
<surname>Pratte</surname> <given-names>Z. A.</given-names>
</name>
<name>
<surname>Kerwin</surname> <given-names>A. H.</given-names>
</name>
<name>
<surname>Rotjan</surname> <given-names>R. D.</given-names>
</name>
<name>
<surname>Stewart</surname> <given-names>F. J.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Season, But Not Symbiont State, Drives Microbiome Structure in the Temperate Coral <italic>Astrangia Poculata</italic>
</article-title>. <source>Microbiome</source> <volume>5</volume>, <fpage>120</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s40168-017-0329-8</pub-id>
</citation>
</ref>
<ref id="B81">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shiu</surname> <given-names>J.-H.</given-names>
</name>
<name>
<surname>Yu</surname> <given-names>S.-P.</given-names>
</name>
<name>
<surname>Fong</surname> <given-names>C.-L.</given-names>
</name>
<name>
<surname>Ding</surname> <given-names>J.-Y.</given-names>
</name>
<name>
<surname>Tan</surname> <given-names>C.-J.</given-names>
</name>
<name>
<surname>Fan</surname> <given-names>T.-Y.</given-names>
</name>
<etal/>
</person-group>. (<year>2020</year>). <article-title>Shifting in the Dominant Bacterial Group <italic>Endozoicomonas</italic> Is Independent of the Dissociation With Coral Symbiont Algae</article-title>. <source>Front. Microbiol.</source> <volume>11</volume>, <elocation-id>1791</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2020.01791</pub-id>
</citation>
</ref>
<ref id="B82">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Stoner</surname> <given-names>E. W.</given-names>
</name>
<name>
<surname>Layman</surname> <given-names>C. A.</given-names>
</name>
<name>
<surname>Yager</surname> <given-names>L. A.</given-names>
</name>
<name>
<surname>Hassett</surname> <given-names>H. M.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Effects of Anthropogenic Disturbance on the Abundance and Size of Epibenthic Jellyfish Cassiopea Spp</article-title>. <source>Mar. Poll. Bull.</source> <volume>62</volume>, <fpage>1109</fpage>&#x2013;<lpage>1114</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.marpollbul.2011.03.023</pub-id>
</citation>
</ref>
<ref id="B83">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tinta</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Kogov&#x161;ek</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Klun</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Malej</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Herndl</surname> <given-names>G. J.</given-names>
</name>
<name>
<surname>Turk</surname> <given-names>V.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Jellyfish-Associated Microbiome in the Marine Environment: Exploring Its Biotechnological Potential</article-title>. <source>Mar. Drugs</source> <volume>17</volume>, <elocation-id>94</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/md17020094</pub-id>
</citation>
</ref>
<ref id="B84">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tinta</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Kogov&#x161;ek</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Malej</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Turk</surname> <given-names>V.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Jellyfish Modulate Bacterial Dynamic and Community Structure</article-title>. <source>PLos One</source> <volume>7</volume>, <elocation-id>e39274</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0039274</pub-id>
</citation>
</ref>
<ref id="B85">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tout</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Siboni</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Messer</surname> <given-names>L. F.</given-names>
</name>
<name>
<surname>Garren</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Stocker</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Webster</surname> <given-names>N. S.</given-names>
</name>
<etal/>
</person-group>. (<year>2015</year>). <article-title>Increased Seawater Temperature Increases the Abundance and Alters the Structure of Natural <italic>Vibrio</italic> Populations Associated With the Coral <italic>Pocillopora Damicornis</italic>
</article-title>. <source>Front. Microbiol.</source> <volume>6</volume>, <elocation-id>432</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2015.00432</pub-id>
</citation>
</ref>
<ref id="B86">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tremblay</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Grover</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Maguer</surname> <given-names>J. F.</given-names>
</name>
<name>
<surname>Legendre</surname> <given-names>L.</given-names>
</name>
<name>
<surname>Ferrier-Pag&#xe8;s</surname> <given-names>C.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Autotrophic Carbon Budget in Coral Tissue: A New <sup>13</sup>C-Based Model of Photosynthate Translocation</article-title>. <source>J. Exp. Biol.</source> <volume>215</volume>, <fpage>1384</fpage>&#x2013;<lpage>1393</lpage>. doi: <pub-id pub-id-type="doi">10.1242/jeb.065201</pub-id>
</citation>
</ref>
<ref id="B87">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Vega-Thurber</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Willner-Hall</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Rodriguez-Mueller</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Rodriguez-Mueller</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Desnues</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Edwards</surname> <given-names>R. A.</given-names>
</name>
<etal/>
</person-group>. (<year>2009</year>). <article-title>Metagenomic Analysis of Stressed Coral Holobionts</article-title>. <source>Environ. Microbiol.</source> <volume>11</volume>, <fpage>2148</fpage>&#x2013;<lpage>2163</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/j.1462-2920.2009.01935.x</pub-id>
</citation>
</ref>
<ref id="B88">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Viver</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Orellana</surname> <given-names>L. H.</given-names>
</name>
<name>
<surname>Hatt</surname> <given-names>J. K.</given-names>
</name>
<name>
<surname>Urdiain</surname> <given-names>M.</given-names>
</name>
<name>
<surname>D&#xed;az</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Richter</surname> <given-names>M.</given-names>
</name>
<etal/>
</person-group>. (<year>2017</year>). <article-title>The Low Diverse Gastric Microbiome of the Jellyfish <italic>Cotylorhiza Tuberculata</italic> Is Dominated by Four Novel Taxa</article-title>. <source>Environ. Microbiol.</source> <volume>19</volume>, <fpage>3039</fpage>&#x2013;<lpage>3058</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/1462-2920.13763</pub-id>
</citation>
</ref>
<ref id="B89">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Voolstra</surname> <given-names>C. R.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>A Journey Into the Wild of the Cnidarian Model System Aiptasia and Its Symbionts</article-title>. <source>Mol. Ecol.</source> <volume>22</volume>, <fpage>4366</fpage>. doi: <pub-id pub-id-type="doi">10.1111/mec.12464</pub-id>
</citation>
</ref>
<ref id="B90">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Webster</surname> <given-names>N. S.</given-names>
</name>
<name>
<surname>Reusch</surname> <given-names>T. B. H.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Microbial Contributions to the Persistence of Coral Reefs</article-title>. <source>ISME J.</source> <volume>11</volume>, <fpage>2167</fpage>&#x2013;<lpage>2174</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ismej.2017.66</pub-id>
</citation>
</ref>
<ref id="B91">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Weiland-Br&#xe4;uer</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Neulinger</surname> <given-names>S. C.</given-names>
</name>
<name>
<surname>Pinnow</surname> <given-names>N.</given-names>
</name>
<name>
<surname>K&#xfc;nzel</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Baines</surname> <given-names>J. F.</given-names>
</name>
<name>
<surname>Schmitz</surname> <given-names>R. A.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Composition of Bacterial Communities Associated With <italic>Aurelia Aurita</italic> Changes With Compartment, Life Stage, and Population</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>81</volume>, <fpage>6038</fpage>&#x2013;<lpage>6052</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/AEM.01601-15</pub-id>
</citation>
</ref>
<ref id="B92">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wickham</surname> <given-names>H.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Ggplot2: Elegant Graphics for Data Analysis</article-title>. <source>J. Stat. Software</source> <volume>35</volume>, <fpage>216</fpage>. doi: <pub-id pub-id-type="doi">10.1007/978-3-319-24277-4</pub-id>
</citation>
</ref>
<ref id="B93">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wild</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Huettel</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Klueter</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Kremb</surname> <given-names>S. G.</given-names>
</name>
<name>
<surname>Rasheed</surname> <given-names>M. Y. M.</given-names>
</name>
<name>
<surname>J&#xf8;rgensen</surname> <given-names>B. B.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Coral Mucus Functions as an Energy Carrier and Particle Trap in the Reef Ecosystem</article-title>. <source>Nature</source> <volume>428</volume>, <fpage>66</fpage>&#x2013;<lpage>70</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nature02344</pub-id>
</citation>
</ref>
<ref id="B94">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wright</surname> <given-names>R. M.</given-names>
</name>
<name>
<surname>Strader</surname> <given-names>M. E.</given-names>
</name>
<name>
<surname>Genuise</surname> <given-names>H. M.</given-names>
</name>
<name>
<surname>Matz</surname> <given-names>M.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Effects of Thermal Stress on Amount, Composition, and Antibacterial Properties of Coral Mucus</article-title>. <source>PeerJ</source> <volume>7</volume>, <elocation-id>e6849</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.7717/peerj.6849</pub-id>
</citation>
</ref>
<ref id="B95">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yang</surname> <given-names>S.-H.</given-names>
</name>
<name>
<surname>Tseng</surname> <given-names>C.-H.</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>C.-R.</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>C.-P.</given-names>
</name>
<name>
<surname>Tandon</surname> <given-names>K.</given-names>
</name>
<name>
<surname>Lee</surname> <given-names>S. T. M.</given-names>
</name>
<etal/>
</person-group>. (<year>2017</year>). <article-title>Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals</article-title>. <source>Front. Microbiol.</source> <volume>8</volume>, <elocation-id>1094</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2017.01094</pub-id>
</citation>
</ref>
<ref id="B96">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zaneveld</surname> <given-names>J. R.</given-names>
</name>
<name>
<surname>Burkepile</surname> <given-names>D. E.</given-names>
</name>
<name>
<surname>Shantz</surname> <given-names>A. A.</given-names>
</name>
<name>
<surname>Pritchard</surname> <given-names>C. E.</given-names>
</name>
<name>
<surname>McMinds</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Prayet</surname> <given-names>J. P.</given-names>
</name>
<etal/>
</person-group>. (<year>2016</year>). <article-title>Overfishing and Nutrient Pollution Interact With Temperature to Disrupt Coral Reefs Down to Microbial Scales</article-title>. <source>Nat. Commun.</source> <volume>7</volume>, <elocation-id>11833</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/ncomms11833</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>