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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.870021</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Effects of Mixing and Stratification on the Vertical Distribution and Size Spectrum of Zooplankton on the Shelf and Slope of the Northern South China Sea</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Kaixuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1638263"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhou</surname>
<given-names>Meng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhong</surname>
<given-names>Yisen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1743248"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Waniek</surname>
<given-names>Joanna J.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/651821"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shan</surname>
<given-names>Congwen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Zhaoru</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1042528"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>School of Oceanography, Shanghai Jiao Tong University</institution>, <addr-line>Shanghai</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Marine Chemistry, Leibniz Institute for Baltic Sea Research Warnem&#xfc;nde (IOW)</institution>, <addr-line>Rostock</addr-line>, <country>Germany</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Alberto Basset, University of Salento, Italy</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Qiang Hao, Ministry of Natural Resources, China; Andrea Bertolo, Universit&#xe9; du Qu&#xe9;bec &#xe0; Trois-Rivi&#xe8;res, Canada; Emilia Trudnowska, Polish Academy of Sciences, Poland</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Meng Zhou, <email xlink:href="mailto:meng.zhou@sjtu.edu.cn">meng.zhou@sjtu.edu.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Marine Ecosystem Ecology, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>14</day>
<month>06</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>870021</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>02</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>05</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Chen, Zhou, Zhong, Waniek, Shan and Zhang</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Chen, Zhou, Zhong, Waniek, Shan and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The northern shelf and off-shelf regions of the South China Sea (SCS) present a stark contrast between being eutrophic from terrestrial runoffs of nutrients and biota and being oligotrophic with multiple nutrient limitations due to the distance to land sources and stable permanent stratification. The abundance, size, and trophic structures of plankton in the shelf and off-shelf regions were studied in a joint Sino-German cruise conducted between September 1 and 24, 2018. A laser optical plankton counter was mounted on a water sampler-CTD (conductivity&#x2013;temperature&#x2013;depth) system for studying the horizontal and vertical distributions of plankton structures in a size range between 0.1 and 35 mm and their relationships with hydrographic and biological features in the northern SCS and its shelf region. Results revealed the subsurface chlorophyll maximum layer (SCM) below the pycnocline and plankton aggregation near the SCM about a depth of 50&#x2013;60 m. The distributions of small plankton between 0.1 and 0.5 mm were strongly correlated with stratification and SCM compared to those of large plankton. Analyzing the intercept and slope of a normalized biovolume spectrum (NBVS) as an indicator for abundance and size structure of a plankton community, results revealed that in the shelf region, the slopes exhibited no significant vertical variations in the water column regardless of stratification and SCM. In contrast, in the off-shelf stratified water column, the intercepts and slopes were lower and flatter in the surface layer, higher and steeper in the SCM layer, and the lowest and flattest in the deep layer. Stirring by the typhoon also altered both the abundances and size structures of the plankton communities, with significant regional differences. This study elucidates the variances of plankton abundances, distributions, NBVS slopes, and intercepts among different water column structures in both shelf and off-shelf regions of the northern SCS.</p>
</abstract>
<kwd-group>
<kwd>zooplankton</kwd>
<kwd>laser optical plankton counter</kwd>
<kwd>vertical distribution</kwd>
<kwd>size spectrum</kwd>
<kwd>South China Sea</kwd>
</kwd-group>
<counts>
<fig-count count="9"/>
<table-count count="1"/>
<equation-count count="5"/>
<ref-count count="80"/>
<page-count count="16"/>
<word-count count="7340"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>The plankton community structure is critical for ecosystem dynamics that determines the potential of primary production and efficiency to transform biomass between primary producers and high-trophic-level consumers (<xref ref-type="bibr" rid="B48">Proulx and Mazumder, 1998</xref>; <xref ref-type="bibr" rid="B7">Calbet and Landry, 2004</xref>; <xref ref-type="bibr" rid="B65">Ware and Thomson, 2005</xref>). In particular, the vertical distribution and grazing of zooplankton in the ocean have a significant impact on the community respiration and vertical carbon flux (<xref ref-type="bibr" rid="B24">Herman, 1983</xref>; <xref ref-type="bibr" rid="B23">Harris, 1988</xref>; <xref ref-type="bibr" rid="B29">Kiorboe, 1997</xref>; <xref ref-type="bibr" rid="B6">Buitenhuis et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B64">Turner, 2015</xref>; <xref ref-type="bibr" rid="B5">Briseno-Avena et&#xa0;al., 2020</xref>). Research on marine plankton based on particle sizes has gradually evolved from empirical observations and hypotheses into biomass spectrum theories (<xref ref-type="bibr" rid="B52">Sheldon et&#xa0;al., 1972</xref>; <xref ref-type="bibr" rid="B46">Platt and Denman, 1977</xref>; <xref ref-type="bibr" rid="B53">Silvert and Platt, 1978</xref>; <xref ref-type="bibr" rid="B77">Zhou and Huntley, 1997</xref>; <xref ref-type="bibr" rid="B74">Zhou, 2006</xref>). The normalized biomass spectrum theory is a currently well-established method to describe the plankton community. The two characteristic parameters (slope and intercept) of the normalized biomass spectrum are considered to be closely involved in biological processes (<xref ref-type="bibr" rid="B55">Sprules and Munawar, 1986</xref>; <xref ref-type="bibr" rid="B54">Sprules et&#xa0;al., 2016</xref>). For example, the slope is interpreted as the ratio of the change in abundance to the individual growth rates (<xref ref-type="bibr" rid="B77">Zhou and Huntley, 1997</xref>). Meanwhile, the slope reflects the trophic levels and assimilation efficiency of the community from the trophic structure analysis (<xref ref-type="bibr" rid="B74">Zhou, 2006</xref>). The intercept is considered as an indicator of the total abundance or biomass of the community (<xref ref-type="bibr" rid="B55">Sprules and Munawar, 1986</xref>; <xref ref-type="bibr" rid="B20">G&#xf3;mez-Canchong et&#xa0;al., 2013</xref>). Therefore, analyses of structural characteristics and differences of biomass spectra can provide more information on community structures, productivity, and biomass transfer between trophic levels; i.e., in a specific area and season, the plankton size spectrum has distinct characteristics, reflecting specific community structures and ecological processes (<xref ref-type="bibr" rid="B52">Sheldon et&#xa0;al., 1972</xref>; <xref ref-type="bibr" rid="B46">Platt and Denman, 1977</xref>; <xref ref-type="bibr" rid="B15">Dickie et&#xa0;al., 1987</xref>; <xref ref-type="bibr" rid="B77">Zhou and Huntley, 1997</xref>; <xref ref-type="bibr" rid="B74">Zhou, 2006</xref>; <xref ref-type="bibr" rid="B78">Zhou et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B59">Trudnowska et&#xa0;al., 2014</xref>). However, studies on the vertical variations of biomass spectra in the water column are rare. Previous studies have analyzed the differences of the slope and intercept in water layers distinguished based on water masses (<xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B40">Marcolin et&#xa0;al., 2015b</xref>).</p>
<p>Traditional sampling methods for plankton are time-consuming even at low spatial&#x2013;temporal resolution. Most of them use vertical plankton net tows or water samplers in a fixed depth range, which often prohibits from resolving vertical processes of plankton dynamics. With advances of marine technologies, acoustic, optical, and other plankton sampling instruments have appeared, which have supported observations, interpretations, and model development of plankton biomass spectra (<xref ref-type="bibr" rid="B80">Zhou et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B69">Yang et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B5">Briseno-Avena et&#xa0;al., 2020</xref>). The laser optical plankton counter (LOPC, RR Brooke Ocean Technologies, Dartmouth, Nova Scotia, CAN) is a high-precision counting instrument, which has been used to measure plankton abundances, size structures, and biomasses around the world (<xref ref-type="bibr" rid="B26">Herman and Harvey, 2006</xref>; <xref ref-type="bibr" rid="B8">Checkley et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B3">Basedow et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B59">Trudnowska et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B41">Marcolin et&#xa0;al., 2015a</xref>). Deployments of an LOPC include being installed on a towed platform, mounted on a vertical profiler, or used in a laboratory. Size structure data from an LOPC have stimulated the advances of biomass spectrum theory and brought significant insight into regional food-web dynamics (<xref ref-type="bibr" rid="B39">Marcolin et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B59">Trudnowska et&#xa0;al., 2014</xref>).</p>
<p>The South China Sea (SCS) is the third largest marginal sea (partially enclosed by islands, archipelagos, or peninsulas) in the world. It is a typical oligotrophic sea with low productivity (<xref ref-type="bibr" rid="B57">Su, 2004</xref>). Previous studies have focused on the composition, distribution characteristics, and living habits of plankton in the SCS (<xref ref-type="bibr" rid="B58">Tan et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B37">Li et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B73">Zhang et&#xa0;al., 2009</xref>). Though there are few studies on size structures and size spectra of zooplankton in the SCS, some results indicate correlations between general distributions and hydrological elements as well as physical processes based on size spectrum analyses (<xref ref-type="bibr" rid="B76">Zhou et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B72">Zhang et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B10">Chen et&#xa0;al., 2020</xref>). However, most of them are based on integrated water columns and vertical information on size structures of zooplankton is missing. Because the size structures have significant effects on biomass flow in an ecosystem, there is still an urgent need for simultaneous studies on detailed vertical hydrographic features, plankton distributions, and size spectra to understand the vertical biomass flow in food webs and fluxes.</p>
<p>Catastrophic events can cause significant alteration of a well-established ecosystem and ecosystem structure. There are a number of studies in the SCS on the effects of typhoons on the ecosystem. Most of them focused on the responses of nutrients and phytoplankton groups (<xref ref-type="bibr" rid="B51">Shang et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B38">Mao et&#xa0;al., 2019</xref>). Reports on zooplankton and size structure are rare. There is an urgent need to understand the effects of a typhoon on the vertical structures of zooplankton, that is, the responses of consumers to events in addition to nutrient fluxes and primary production.</p>
<p>In this study, the general patterns of zooplankton abundances, biomasses, and size structures relative to vertical features of physical processes were analyzed in the shelf and slope regions of the northern SCS using an LOPC. In terms of aggregations and trophic structures, the alterations of these zooplankton characteristics caused by a strong typhoon event were analyzed. The comparisons between the general patterns and alterations of an event were made for a better understanding of the functions of the vertical plankton community structures.</p>
</sec>
<sec id="s2">
<title>Data and Methods</title>
<sec id="s2_1">
<title>Study Area</title>
<p>The survey area is located in northern SCS between 18&#xb0;N and 22&#xb0;N in latitude and between 112&#xb0;E and 117&#xb0;E in longitude across the continental shelf and slope areas (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Hydrographic and LOPC data were collected at 64 stations during the Joint Sino-German cruise conducted during September 1 and 24, 2018. Three transects, S1, S2 and S3, were selected for detailed hydrographic and biological analyses. Data at stations 13 and 31 were lost due to instrument malfunction. Among all stations, 26 stations are located on the continental shelf with water depths less than 200 m, and 36 stations are located on the continental slope with water depths greater than 200 m. During this cruise, a super typhoon named Mangkhut passed through the northern SCS. The red box marks the stations sampled after the typhoon passed.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>The study area in the SCS. The black dots and numbers are the sampling stations overlaid over topography. The 3 red boxes mark stations surveyed after the typhoon. The three long sections are S1, S2, and S3 from west to east, where S2 is the section investigated after the typhoon. The dark red solid line and dots are the path of the typhoon.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g001.tif"/>
</fig>
</sec>
<sec id="s2_2">
<title>Sampling Methods</title>
<p>Temperature, salinity, and chlorophyll were measured by an SBE 911plus CTD (Seabird Electronics Inc., Bellevue WA, USA). The abundance and size structures of plankton were measured by an LOPC, which employs optical technologies to count and measure all particles between 0.1 and 35 mm passing through the light path in the sampling tunnel (7&#xd7;7 cm wide) at 2 Hz (<xref ref-type="bibr" rid="B25">Herman, 2004</xref>). Compared with traditional biological sampling methods, an LOPC provides not only plankton data with high spatial-temporal resolutions but also the convenience to be deployed on various platforms such as a rosette water sampler or towed vehicle (<xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>). In this survey, the LOPC was mounted on a rosette water sampler with a CTD. To avoid the effects of the rosette and CTD frames, only the data collected during the downcast are used. The counts of particles in size bins were recorded by the LOPC and data were downloaded after the instrument was recovered to the deck at each station. The size range of particles measured by an LOPC between 0.1 and 35 mm is primarily composed of mesozooplankton, microzooplankton, larger-sized phytoplankton, detritus, marine snow, and fecal particles (<xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B72">Zhang et&#xa0;al., 2019</xref>).</p>
</sec>
</sec>
<sec id="s3">
<title>Data Processing</title>
<sec id="s3_1">
<title>Water Column Vertical Structure</title>
<p>Brunt-V&#xe4;is&#xe4;l&#xe4; frequency (s<sup>&#x2212;2</sup>) was applied to quantify the stratification, which is given by:</p>
<disp-formula>
<label>(1)</label>
<mml:math display="block" id="M1">
<mml:mrow>
<mml:msup>
<mml:mi>N</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mi>g</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:mfrac>
<mml:mfrac>
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>&#x3c1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>g</italic> is the acceleration constant of gravity (9.8 m s<sup>&#x2212;2</sup>), <italic>&#x3c1;</italic> is the density (kg m<sup>&#x2212;3</sup>), and <italic>z</italic> is the vertical axis (m). The smaller Brunt-V&#xe4;is&#xe4;l&#xe4; frequency indicates smaller density gradient and weaker stratification, and <italic>vice versa</italic>, indicating strong water column stratification.</p>
</sec>
<sec id="s3_2">
<title>Zooplankton Abundance and Biovolume Measured by LOPC</title>
<p>The downcast profile data were used for our analyses because the CTD-LOPC was lowered at a relatively stable speed without stopping for water sampling during the downcast. At each selected station, LOPC data were collected over the full water depth. During the data processing, the data down to 5 m below the sea surface were removed to avoid interference of bubbles in zooplankton measurements. The counts of particles largely depend on the volume of seawater passing through the instrument window during each sampling interval. In this study, we used the area of the opening multiplied by the depth change within the sampling time (0.5 s) as the sampling volume. The particle concentration was calculated by the particle count normalized by the sampling volume. In order to avoid repeated particle counting in strong wave conditions, the LOPC data with a depth increment of less than 0.1 m was deleted, considering the lowering speed of a CTD-LOPC of approximately 1 m s<sup>&#x2212;1</sup> (<xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>).</p>
<p>LOPC data are divided into single-element plankton (SEP) and multi-element plankton (MEP). SEP measures particles with size smaller than 1.8 mm. The instrument only records their counts and sizes in 128 size bins between 0.1 and 1.8 mm. MEP measurements count particles with body sizes greater than 1.5 mm, and record the shape of a MEP particle in addition to their counts (<xref ref-type="bibr" rid="B25">Herman, 2004</xref>). The particle size of a MEP particle can be calculated by a known formula and digital sizes (DS) in MEP elements (<xref ref-type="bibr" rid="B8">Checkley et&#xa0;al., 2008</xref>). It should be noted that the estimation of equivalence sphere diameter (ESD) ignores the shape of MEP particles.</p>
<disp-formula>
<label>(2)</label>
<mml:math display="block" id="M2">
<mml:mrow>
<mml:mi>E</mml:mi>
<mml:mi>S</mml:mi>
<mml:mi>D</mml:mi>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>a</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>a</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
<mml:mstyle displaystyle="true">
<mml:mo>&#x2211;</mml:mo> <mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>S</mml:mi>
</mml:mrow>
</mml:mstyle>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>a</mml:mi>
<mml:mn>3</mml:mn>
</mml:msub>
<mml:mstyle displaystyle="true">
<mml:mo>&#x2211;</mml:mo> <mml:mrow>
<mml:mi>D</mml:mi>
<mml:msup>
<mml:mi>S</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:mstyle>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>a</mml:mi>
<mml:mn>4</mml:mn>
</mml:msub>
<mml:mstyle displaystyle="true">
<mml:mo>&#x2211;</mml:mo> <mml:mrow>
<mml:mi>D</mml:mi>
<mml:msup>
<mml:mi>S</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
</mml:mrow>
</mml:mstyle>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where &#x2211;<italic>DS</italic> is the sum of DSs in a MEP element, <italic>a<sub>1</sub>
</italic> = 0.1806059, <italic>a</italic>
<sub>2</sub> = 2.54589 &#xd7; 10<sup>-4</sup>, <italic>a</italic>
<sub>3</sub> = -1.0988 &#xd7; 10<sup>-9</sup>, and <italic>a</italic>
<sub>4</sub> = 9.54 &#xd7; 10<sup>-15</sup>.</p>
<p>In addition, the shape information of MEP could be used to calculate the transparency of the particles (<xref ref-type="bibr" rid="B8">Checkley et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B3">Basedow et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>). The attnuation index (AI) was calculated as follows:</p>
<disp-formula>
<label>(3)</label>
<mml:math display="block" id="M3">
<mml:mrow>
<mml:mi>A</mml:mi>
<mml:mi>I</mml:mi>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mn>1</mml:mn>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#xd7;</mml:mo>
<mml:mi>m</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>x</mml:mi>
<mml:mi>D</mml:mi>
<mml:mi>S</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mstyle displaystyle="true">
<mml:msubsup>
<mml:mo>&#x2211;</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mstyle>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>n</italic> is the number of elements and <italic>maxDS</italic> is the maximum DS of a MEP when it completely occludes a diode element. Thus, the closer the AI is to zero, the more transparent the particle is (<xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>). We only retained the particles with AI &gt; 0.4, by which non-zooplankton particles were excluded, such as marine snow or aggregates (<xref ref-type="bibr" rid="B8">Checkley et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B19">Gaardsted et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B3">Basedow et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>). Therefore, all SEPs and MEPs (AI &gt; 0.4) were included in the measured data. At the same time, we also removed the incoherent M sequences (i.e., sequences manifested as incoherent sequence numbers of occluded elements). Studies have shown that when the particle concentration in seawater is extremely high (&gt;10<sup>6</sup> counts m<sup>&#x2212;3</sup>), the instrument may record multiple particles as one when they passed through the laser array at the same time (<xref ref-type="bibr" rid="B50">Schultes and Lopes, 2009</xref>; <xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>).</p>
<p>After averaging LOPC concentrations at every 5-m depth interval, plankton concentrations of different size bins were obtained at each station. According to their sizes and concentrations, we estimated the zooplankton biovolume for different sizes within the LOPC size range. In this study, the biovolume was calculated based on the sphere volume formula instead of the ellipsoid volume formula as in the other studies. Not only are the zooplankton species measured in different shapes, the directions of the particles passing the LOPC tunnel are also uncertain. Assuming that particles passing through the tunnel are oriented randomly, this assumption is statistically equivalent to the ESD and the sphere volume formula based on ESD. By doing this, the data processing avoids any subjective hypothesis of ratios of major to minor axis for ellipsoid volume formula. All data are processed using internal programs developed by MATLAB software (MathWorks Company, USA).</p>
</sec>
<sec id="s3_3">
<title>Biological Volume Spectrum</title>
<p>The plankton size spectrum, also called size distribution, is a distribution curve between the size of the plankton and the biomass in the corresponding size interval. In order to obtain a size spectrum independent from sizes of size intervals, a normalized size spectrum is used by normalizing the biomass in a size bin by its size intervals (<xref ref-type="bibr" rid="B46">Platt and Denman, 1977</xref>). In recent years, scientists have developed several measures to represent the size of a plankter, such as body ESD, biovolume, dry weight, wet weight, and carbon content (<xref ref-type="bibr" rid="B79">Zhou et&#xa0;al., 2010a</xref>). In this study, we use the biovolume as the body size and biomass in a size interval. The size-dependent concentration data of zooplankton between 0.1 and 35 mm were integrated into 50 particle biovolume bins with an equal spacing based on the logarithmic scale. Then, the biomass in each biovolume bin was divided by the biovolume bin interval in order to obtain the normalized biovolume spectrum (<xref ref-type="bibr" rid="B46">Platt and Denman, 1977</xref>), i.e.,</p>
<disp-formula>
<label>(4)</label>
<mml:math display="block" id="M4">
<mml:mrow>
<mml:mi>b</mml:mi>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>B</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>v</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>m</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>c</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>c</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>n</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>m</mml:mi>
<mml:msup>
<mml:mi>m</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
<mml:mo stretchy="false">/</mml:mo>
<mml:msup>
<mml:mi>m</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>t</mml:mi>
<mml:mi>h</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>s</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>z</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>w</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>w</mml:mi>
<mml:mo>+</mml:mo>
<mml:mi>&#x394;</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mi>T</mml:mi>
<mml:mi>h</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>s</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>z</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>i</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>r</mml:mi>
<mml:mi>v</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>l</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>&#x394;</mml:mi>
<mml:mi>w</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>m</mml:mi>
<mml:msup>
<mml:mi>m</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:mrow>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msup>
<mml:mi>m</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>b</italic> is normalized biovolume spectrum (NBVS), biovolume is in mm<sup>3</sup>, water volume filtered is in m<sup>3</sup>, <italic>w</italic> is the size of the individual plankton in mm<sup>3</sup>, and &#x394;<italic>w</italic> is the interval of each particle size bin in mm<sup>3</sup>. The median value in each particle size class is used to represent the biovolume size of this size bin. In the double logarithmic coordinates, we apply the least square method to fit the biological volume spectrum to a straight line, that is</p>
<disp-formula>
<label>(5)</label>
<mml:math display="block" id="M5">
<mml:mrow>
<mml:mi>l</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>b</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mi>&#x3b2;</mml:mi>
<mml:mo>+</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>w</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>&#x3b2;</italic> is the intercept and &#x3b1; is the slope of the line known as the slope of an NBVS. However, the intercept <italic>&#x3b2;</italic> is the value of <italic>log(b)</italic> when <italic>log(w)</italic> is zero or <italic>w</italic> is the unit. The intercept is determined by both the slope and the distance of measurements away from the unit (<xref ref-type="bibr" rid="B20">G&#xf3;mez-Canchong et&#xa0;al., 2013</xref>). To avoid the distance from the unit, the intercepts of <italic>log(b)</italic> at the midpoint of the <italic>log(w)</italic> size range measured were used as suggested by <xref ref-type="bibr" rid="B14">Daan et&#xa0;al. (2005)</xref>. Another advantage of using the intercepts at the middle of the <italic>log</italic> size range is that this intercept is independent of the slope and is more realistic to represent the total abundance of the plankton community (<xref ref-type="bibr" rid="B54">Sprules et&#xa0;al., 2016</xref>).</p>
</sec>
</sec>
<sec id="s4">
<title>Results</title>
<sec id="s4_1">
<title>Hydrography</title>
<p>The sea surface temperature and salinity distributions show a large-scale eddy with cold and salty water center at approximately 20.75&#xb0;N and 114.7&#xb0;E (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). During the survey, a typhoon passed by the study area. This lower temperature and high salinity center could be caused by either wind mixing or a large-scale eddy with upwelling. The surface temperatures at those stations (stations 29&#x2013;41, 43&#x2013;46, and 49&#x2013;51) surveyed after the typhoon were about 1.5&#xb0;C lower than that of other stations. The surface salinity was between 32 nearshore and 34 off-shelf. After the typhoon, the temperature and salinity of the water column changed due to mixing of the 0&#x2013;50 m water column (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The low salinity water was a mixture between freshwater runoffs and nearshore water. The salinity values at most shelf and off-shelf stations were about 33.5, while the surface salinity at the sites after the typhoon were about 33.8, presumably due to mixing and Ekman pumping.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Sea surface temperature (SST, &#xb0;C) <bold>(A)</bold> and sea surface salinity (SSS) <bold>(B)</bold> in the study area. The gray dashed boxes are the stations sampled after the typhoon.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>T&#x2013;S diagram of 62 stations from surface to 50 m depth. Blue solid points are water columns before the typhoon and orange solid points are water columns affected by the typhoon.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g003.tif"/>
</fig>
<p>In summer, the water column was stratified in the northern SCS (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). The mixed layer was shallower than 30 m, and the thermocline and halocline were hydrostatically stable in the upper 50 m. The stratification of the water column varied between shelf and off-shelf regions and also before and after the typhoon. The water column on the shelf was well stratified before the typhoon arrived (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A, C</bold>
</xref>). After the typhoon, the shallow water columns on the shelf were mixed (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). On and off slope, the water columns were deep enough to remain stratified though the mixed layers deepened (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). Several bulges of isotherms and isohaline on transects S1&#x2013;3 appeared near the 200-m isobath. At these stations, the salinity of the mixed layer was higher than those of the surrounding stations and the temperatures were lower than those of the surrounding stations. The salinity was increased, the halocline was disturbed, and the stratification strength was weakened.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Three transects [S1: <bold>(A&#x2013;D)</bold>, S2: <bold>(E&#x2013;H)</bold>, S3: <bold>(I&#x2013;L)</bold>] of temperature (&#xb0;C, left panel), salinity (the second panel), chlorophyll concentration (mg/m<sup>3</sup>, the third panel), and Brunt-V&#xe4;is&#xe4;l&#xe4; frequency (s<sup>&#x2212;2</sup>, right panel). The solid white dots are the positions of the sites.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g004.tif"/>
</fig>
<p>To measure the degree of water column stratification, Brunt-V&#xe4;is&#xe4;l&#xe4; frequency (<italic>N</italic>
<sup>2</sup>) was computed along transects S1, S2, and S3 (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). The <italic>N</italic>
<sup>2</sup> maximum was between 25 and 85 m, shallower on the shelf region by about 30 m, and deeper in the off-shelf area by about 50 m. Because the water column on transect S2 was affected by the typhoon, the <italic>N</italic>
<sup>2</sup> maximum was at about 85 m at stations 33 and 35.</p>
</sec>
<sec id="s4_2">
<title>Chlorophyll Distribution</title>
<p>In summer 2018, the chlorophyll maximum in the northern SCS appeared in the subsurface layer, with a depth of about 50&#x2013;75 m (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). The subsurface chlorophyll maximum (SCM) in the slope region was deeper than that of the shelf, and the deepest at station 64 was at approximately 82.5 m. The average chlorophyll concentration within the shallow water column at 200 m in the northern SCS was 0.36 mg m<sup>&#x2212;3</sup>, measured by a calibrated fluorometer except for the abnormal value of station 1. The average chlorophyll concentration in the water column at station 32 affected by the typhoon was the highest, 0.84 mg m<sup>&#x2212;3</sup>, and the concentration at station 11 at the slope area was 0.18 mg m<sup>&#x2212;3</sup>, which is the station with the lowest chlorophyll concentration. The chlorophyll concentrations of the nearshore shelf stations were generally higher than those of the off-shelf slope regions. The chlorophyll concentrations of the stations after the typhoon were systematically higher than those of the other stations surveyed before the typhoon. The maximum chlorophyll concentrations on the shelf were generally greater than 1.0 mg m<sup>&#x2212;3</sup>. On the shelf, the pycnocline and SCM co-occurred in the shallow-water region, while the deep-water shelf region has the SCM in the lower half of the pycnocline.</p>
</sec>
<sec id="s4_3">
<title>Spatial Distributions of Plankton</title>
<p>The average abundance of plankton in the upper 200 m was 10.74&#xd7;10<sup>4</sup> ind. m<sup>&#x2212;3</sup> (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). The maximum abundance was 33.58&#xd7;10<sup>4</sup> ind. m<sup>&#x2212;3</sup> at station 2 near the coast while the lowest abundance was 2.31&#xd7;10<sup>4</sup> ind. m<sup>&#x2212;3</sup> at station 23 in the continental slope area. At the same time, the average biomass in the SCS was 1.21&#xd7;10<sup>3</sup> mm<sup>3</sup> m<sup>&#x2212;3</sup> (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). The maximum biovolume was 17.98&#xd7;10<sup>3</sup> mm<sup>3</sup> m<sup>&#x2212;3</sup> at station 30 near the coast while the lowest biovolume was 0.13&#xd7;10<sup>3</sup> mm<sup>3</sup> m<sup>&#x2212;3</sup> at station 28 in the continental slope area. The plankton abundance (<italic>p</italic> &lt; 0.01) and biovolume (<italic>p</italic> &lt; 0.01) in the continental slope were generally lower than those in the shelf region. There were significant changes in abundance (<italic>p</italic> &lt; 0.05) after the typhoon while the changes in biovolume were not significant (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>The water column average of plankton abundance distribution (#/m<sup>3</sup>, left panel) and biovolume concentration (mm<sup>3</sup>/m<sup>3</sup>, right panel) in northern SCS. The gray dashed boxes are the stations sampled after the typhoon.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g005.tif"/>
</fig>
<p>The zooplankton distributions of 5 different size groups are shown along the 3 transects (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). The plankton biovolume concentrations were higher in the upper 100 m than that at depth. The abundance and biovolume concentrations of zooplankton near the pycnocline were the highest (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). Especially in the off-slope region, the biovolume maximum layer of small-size plankton was co-occurring well with the pycnocline, while the distribution of large-size plankton was less correlated with the pycnocline. Before the typhoon, the biovolume (<italic>r</italic>
<sup>2</sup> = 0.52, <italic>p</italic> &lt; 0.01) and abundance (<italic>r</italic>
<sup>2</sup> = 0.70, <italic>p</italic> &lt; 0.01) in the off-shelf region were aggregated near the density discontinuity and more dispersed in the shelf region (biovolume: <italic>r</italic>
<sup>2</sup> = 0.19, <italic>p</italic> &lt; 0.01; abundance: <italic>r</italic>
<sup>2</sup> = 0.28, <italic>p</italic> &lt; 0.01). At the stations on the shelf on transect S2 affected by the typhoon, the water columns were fully mixed, and plankton was evenly distributed in the water column without aggregations (biovolume: <italic>r</italic>
<sup>2</sup> = &#x2212;0.32, <italic>p</italic> &lt; 0.01; abundance: <italic>r</italic>
<sup>2</sup> = &#x2212;0.24, <italic>p</italic> &lt; 0.05) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;2</bold>
</xref>).</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Contours are Brunt-V&#xe4;is&#xe4;l&#xe4; frequency (s<sup>&#x2212;2</sup>) and solid circles are biovolume (mm<sup>3</sup>/m<sup>3</sup>) of five size groups [<bold>(A, F, K)</bold> 0.1&#x2013;0.2 mm, <bold>(B, G, L)</bold> 0.2&#x2013;0.5 mm, <bold>(C, H, M)</bold> 0.5&#x2013;1.0 mm, <bold>(D, I, N)</bold> 1.0&#x2013;2.0 mm, and <bold>(E, J, O)</bold> &gt;2.0 mm] along transect S1 (upper panel), S2 (middle panel), and S3 (lower panel).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g006.tif"/>
</fig>
</sec>
<sec id="s4_4">
<title>The Slope and Intercept of Biovolume Spectrum</title>
<p>The slopes of the size spectra along these 3 transects varied between &#x2212;0.4 and &#x2212;1.2 (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). The slope showed obvious differences between shelf and off-shelf regions (<italic>p</italic> &lt; 0.01). At the same time, the intercepts exhibited similar variations to the slopes, ranging from 2 to 4.5 with the regional differences (<italic>p</italic> &lt; 0.01) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). Regional differences in slopes and intercepts of NBVS were reflected in the variations in the water column. In the off-shelf region, the slopes and intercepts presented significant negative correlation (<italic>r</italic>
<sup>2</sup> = &#x2212;0.61, <italic>p</italic> &lt; 0.01) and positive correlation (<italic>r</italic>
<sup>2</sup> = 0.67, <italic>p</italic> &lt; 0.01) with stratification, respectively. In contrast, the correlations were weaker on the shelf (slope: <italic>r</italic>
<sup>2</sup> = &#x2212;0.14, p&gt;0.05; intercept: <italic>r</italic>
<sup>2</sup> = 0.26, <italic>p</italic> &lt; 0.01) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;2</bold>
</xref>).</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Slopes <bold>(A&#x2013;C)</bold> and intercepts <bold>(D&#x2013;F)</bold> of NBVS in transect S1 (left panel), S2 (middle panel), and S3 (right panel).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g007.tif"/>
</fig>
<p>The stations of the three sections were divided into four groups according to measurements before and after the typhoon, and regions on shelf and off the shelf. The slopes and intercepts of NBVS were computed, and the differences and variations in slopes and intercepts were analyzed. The stratification in the off-shelf area was stronger than that of the shelf, and the slopes and intercepts exhibited strong vertical variations (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>). In the off-shelf area, the slopes were flatter between &#x2212;0.4 and &#x2212;0.6 in the upper layers (0&#x2013;30 m), steeper between &#x2212;0.9 and &#x2212;1.1 in the pycnocline and SCM (30&#x2013;80 m), and flattest in the deep-water column (&gt;80 m) (<xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>), while the slopes in the shelf area varied by approximately &#x2212;0.8 with less variations in the vertical. In the shelf region after the typhoon, the strong mixing caused the destratification leading to a uniformly mixed water column. The vertical variations of the slopes were small, while the slopes were significantly steeper than those before the typhoon (<italic>p</italic> &lt; 0.01, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). The intercepts of NBVS were the highest (approximately 4.0) at the surface and decreased with depth in the shelf area both before and after the typhoon. In the off-shelf region, the curves of buoyancy frequency indicated that the mixed layer was deepened by typhoon steering. The corresponding patterns between stratification structure, slopes, and intercepts remained consistent with those before the typhoon. The intercepts were approximately 3.0 in the mixed layer, and increased to a maximum (near 4.0) at the pycnocline and decreased to approximately 2.5 at 200 m.</p>
<fig id="f8" position="float">
<label>Figure&#xa0;8</label>
<caption>
<p>Variations in <italic>N</italic>
<sup>2</sup> (s<sup>&#x2212;2</sup>), the slopes of NBVS, and the intercepts of NBVS with depth in the shelf and off-regions during pre-typhoon and post-typhoon periods. Dark thick solid lines are averages, light transparent filled areas are the 95% confidence intervals, and the light gray points are the measured data within the groups.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g008.tif"/>
</fig>
<p>To compare the NBVS between different layers and to understand the impact of the typhoon, we conducted statistical analysis of the slopes and intercepts of the three vertical layers before and after the typhoon (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>). These three layers were the mixed layer (0&#x2013;30 m), the subsurface layer (30&#x2013;80 m) including pycnocline and SCM, and the deep layer (&gt;80 m). After the typhoon on the shelf, the slopes in these three layers became steeper, especially in the upper layer. Although the slopes in the upper and subsurface layers in off-shelf regions also became steeper, the changes of these slopes were less than those on the shelf. The slopes in the deep water were even flatter, that is, less affected by the typhoon. The intercepts on the shelf increased in the upper layer and decreased in the deep water after the typhoon. The intercepts in the subsurface layer including SCM in the off-shelf areas were the highest in the vertical before and after the typhoon. The intercepts in the mixed layer and subsurface layer were not significantly changed by the typhoon effect (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>).</p>
<fig id="f9" position="float">
<label>Figure&#xa0;9</label>
<caption>
<p>The slopes (upper panel) and intercepts (lower panel) of each layer in the shelf and off-shelf regions before and after the typhoon. The hollow bars are the averages before the typhoon, the solid bars are the averages after the typhoon, and the short lines or circles in the boxes are the medians. Each data group before and after the typhoon was tested by the Mann&#x2013;Whitney <italic>U</italic> test. The test results are marked above the short black lines. **<italic>p</italic> &lt; 0.01, *<italic>p</italic> &lt; 0.05.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-870021-g009.tif"/>
</fig>
</sec>
</sec>
<sec id="s5">
<title>Discussion</title>
<sec id="s5_1">
<title>Ground Truth of LOPC Data</title>
<p>The design and purpose of an LOPC are not made to distinguish living or nonliving particles such as plankton and marine snow during the sampling process. The ground truth relies on other sampling methods such as plankton net tows and camera systems (<xref ref-type="bibr" rid="B67">Wiebe and Benfield, 2003</xref>). A number of studies have tried to separate plankton and aggregates using different reference parameters or mathematical models (<xref ref-type="bibr" rid="B28">Jackson and Checkley, 2011</xref>; <xref ref-type="bibr" rid="B45">Petrik et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B61">Trudnowska et&#xa0;al., 2018</xref>). AI is a parameter calculated based on shape information recorded by LOPC, using it to separate very transparent aggregates or marine snow, applied in many studies and proven to be effective (<xref ref-type="bibr" rid="B8">Checkley et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B19">Gaardsted et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B3">Basedow et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B4">Basedow et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B68">Wiedmann et&#xa0;al., 2014</xref>). Particles with AI &lt; 0.4 were excluded, which was a stringent condition (<xref ref-type="bibr" rid="B19">Gaardsted et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B3">Basedow et&#xa0;al., 2013</xref>). Although it ensured that most of the transparent aggregates were separated from zooplankton, it was also possible that some transparent zooplankton such as hydrozoans were excluded. Based on previous results, the proportion of hydrozoans in the investigation area was small, so we still used 0.4 as the differentiation threshold (<xref ref-type="bibr" rid="B72">Zhang et&#xa0;al., 2019</xref>).</p>
<p>In order to verify biomass measurements by an LOPC, samples from other plankton sampling instruments were used for comparison (<xref ref-type="bibr" rid="B19">Gaardsted et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B3">Basedow et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B41">Marcolin et&#xa0;al., 2015a</xref>; <xref ref-type="bibr" rid="B31">Kydd et&#xa0;al., 2018</xref>). In this study, we used the abundance and biomass data of certain species collected by plankton nets from the previous investigations in the northern SCS for interpreting plankton species vs. abundances and sizes of LOPC measurements. Between an LOPC size range and specific plankton species, the comparative results of biomasses measured by an LOPC and net tows are in the same order of magnitude (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). The values from LOPC measurements are typically higher than that of net tows (<xref ref-type="bibr" rid="B50">Schultes and Lopes, 2009</xref>; <xref ref-type="bibr" rid="B19">Gaardsted et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B66">Watkins et&#xa0;al., 2017</xref>). Zooplankton can easily avoid a net or be squeezed out through the mesh of a net.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Data about plankton abundance from previous studies and this study in different size groups in the northern SCS.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Cruise date</th>
<th valign="top" align="center">Sample depth</th>
<th valign="top" align="center">Abundance</th>
<th valign="top" align="center">Sample area</th>
<th valign="top" align="center">Sample method</th>
<th valign="top" align="center">Cited</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">August&#x2013;September, 2008</td>
<td valign="top" align="center">0&#x2013;100 m</td>
<td valign="top" align="center">180.60&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">18&#x2013;23&#xb0;N<break/>110&#x2013;120&#xb0;E</td>
<td valign="top" align="left">Phytoplankton net, 77 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B33">Ling et&#xa0;al. (2012)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">July&#x2013;August, 2009</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">60.20&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">18&#x2013;22&#xb0;N&#xb0;E<break/>109.5&#x2013;120.5</td>
<td valign="top" align="left">Phytoplankton net, 77 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B21">Gong et&#xa0;al. (2012)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">June, 2015</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">1.24&#x2013;241.86&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">19&#x2013;21&#xb0;N<break/>114&#x2013;117&#xb0;E</td>
<td valign="top" align="left">Phytoplankton net, 77 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B72">Zhang et&#xa0;al. (2019)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">September, 2018</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">107.38 &#xb1; 93.93&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">18&#x2013;22&#xb0;N<break/>112&#x2013;117&#xb0;E</td>
<td valign="top" align="left">LOPC (ESD &gt; 100 &#x3bc;m)</td>
<td valign="top" align="left">This study</td>
</tr>
<tr>
<td valign="top" align="left">July, 1999</td>
<td valign="top" align="center">From the seabed to the surface</td>
<td valign="top" align="center">0.80&#x2013;44.00&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">21.8&#x2013;22.7&#xb0;N<break/>113.3&#x2013;114.5&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 169 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B58">Tan et&#xa0;al. (2004)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">June, 2015</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">0.44&#x2013;3.15&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">19&#x2013;21&#xb0;N<break/>114&#x2013;117&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 160 and 505 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B72">Zhang et&#xa0;al. (2019)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">September, 1999</td>
<td valign="top" align="center">0&#x2013;100 m</td>
<td valign="top" align="center">0.31 &#xb1; 0.43&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">18.0&#x2013;21.5&#xb0;N<break/>115.5&#x2013;119.5&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 333 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B62">Tseng et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">September, 2016</td>
<td valign="top" align="center">0&#x2013;100 m</td>
<td valign="top" align="center">0.13&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">20.0&#x2013;20.5&#xb0;N<break/>116.5&#x2013;117.5&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 300 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B35">Li et&#xa0;al. (2021)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">July, 2002</td>
<td valign="top" align="center">From the seabed to the surface</td>
<td valign="top" align="center">0.46&#xd7;10<sup>3</sup> ind./m<sup>3</sup> average</td>
<td valign="top" align="center">21.5&#x2013;22.8&#xb0;N<break/>113.5&#x2013;114.5&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 505 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B37">Li et&#xa0;al. (2006)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">August&#x2013;September, 2004</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">0.02&#x2013;0.22&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
<break/>Copepods</td>
<td valign="top" align="center">18&#x2013;21.5&#xb0;N<break/>111&#x2013;117&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 505 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B73">Zhang et&#xa0;al. (2009)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">July, 2006</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">0.33&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
<break/>Copepods</td>
<td valign="top" align="center">21&#x2013;23.5&#xb0;N<break/>116&#x2013;119&#xb0;E</td>
<td valign="top" align="left">Zooplankton net, 505 &#x3bc;m mesh</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B22">Guo et&#xa0;al. (2011)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">September, 2018</td>
<td valign="top" align="center">0&#x2013;200 m</td>
<td valign="top" align="center">1.19 &#xb1; 1.82&#xd7;10<sup>3</sup> ind./m<sup>3</sup>
</td>
<td valign="top" align="center">18&#x2013;22&#xb0;N<break/>112&#x2013;117&#xb0;E</td>
<td valign="top" align="left">LOPC (ESD &gt; 500 &#x3bc;m)</td>
<td valign="top" align="left">This study</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The plankton community compositions were analyzed based on the taxonomic information for a set of size intervals previously investigated using live zooplankton samples collected by plankton nets in the northern SCS. Plankton smaller than 200 &#x3bc;m are primarily composed of diatoms like <italic>Rhizosolenia</italic>, <italic>Coscinodiscus</italic>, and <italic>Chaetoceros</italic> as well as dinoflagellates such like <italic>Ceratium</italic> (<xref ref-type="bibr" rid="B71">Zhang, 2016</xref>). Although microplankton such as ciliates are an important part of zooplankton smaller than 200 &#x3bc;m feeding on picophytoplankton, many studies indicate that their abundances are still low compared with that of phytoplankton in the same size range (<xref ref-type="bibr" rid="B56">Strom, 2002</xref>; <xref ref-type="bibr" rid="B7">Calbet and Landry, 2004</xref>; <xref ref-type="bibr" rid="B32">Leising et&#xa0;al., 2005</xref>). Some large phytoplankton (<italic>Rhizosolenia</italic> and <italic>Chaetoceros</italic>) and copepods dominate in the 200- to 500-&#x3bc;m size range (<xref ref-type="bibr" rid="B71">Zhang, 2016</xref>; <xref ref-type="bibr" rid="B72">Zhang et&#xa0;al., 2019</xref>). Zooplankton larger than 500 &#x3bc;m is primarily composed of copepoda, accounting for 70% of the total zooplankton, of which copepoda dominated in the 0.5&#x2013;1.0 mm group; in the 1.0&#x2013;2.0 mm size class, copepoda and Chaetognatha were the main components, and the larger than 2.0 mm group included Chaetognatha, Euphausiacea, and copepoda (<xref ref-type="bibr" rid="B72">Zhang et&#xa0;al., 2019</xref>). Copepods are the most dominant component of zooplankton in the northern SCS, and their grazing rate of phytoplankton reaches 20% (<xref ref-type="bibr" rid="B12">Chen et&#xa0;al., 2015</xref>). Picophytoplankton are the dominant population of phytoplankton in the northern SCS, which are more frequently consumed by microzooplankton (<xref ref-type="bibr" rid="B7">Calbet and Landry, 2004</xref>; <xref ref-type="bibr" rid="B13">Chen et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B44">Pan et&#xa0;al., 2017</xref>). Copepods may not be able to directly ingest these small algae, making carnivorous and omnivorous zooplankton important links between trophic levels (<xref ref-type="bibr" rid="B11">Chen et&#xa0;al., 2017</xref>).</p>
</sec>
<sec id="s5_2">
<title>Pycnocline and Biomass Maxima</title>
<p>It has been observed that zooplankton are concentrated within the pycnocline because aggregates and marine snow are accumulated in the pycnocline (<xref ref-type="bibr" rid="B24">Herman, 1983</xref>; <xref ref-type="bibr" rid="B23">Harris, 1988</xref>; <xref ref-type="bibr" rid="B43">M&#xf6;ller et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B60">Trudnowska et&#xa0;al., 2016</xref>). Previous studies have found that the accumulation of aggregates or marine snow in the pycnocline is caused by a rapid decrease in settling speed due to the steep density gradient (<xref ref-type="bibr" rid="B43">M&#xf6;ller et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>). In such a case, the SCM is typically above the pycnocline so that dead phytoplankton cells or exopolymers are forming marine snow while sinking into the pycnocline where they accumulate (<xref ref-type="bibr" rid="B1">Alldredge and Silver, 1988</xref>; <xref ref-type="bibr" rid="B63">Turner, 2002</xref>; <xref ref-type="bibr" rid="B17">Espinasse et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B5">Briseno-Avena et&#xa0;al., 2020</xref>). In this study, the SCM was generally located below the pycnocline so that the marine snow or aggregates will sink deeper into the ocean without being stopped by any density gradient. There are possibilities of fecal pellets or debris falling into the pycnocline attracting zooplankton to aggregate. As the results showed, most of the excluded particles (AI &lt; 0.4) were concentrated near the pycnocline (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;1</bold>
</xref>). One thing noticeable was that at some stations in this study, the maximum biovolume layer mismatched the SCM layer. Biovolume maxima are typically above the SCM. It is well known that due to photo quenching, the SCM may not be the biomass maximum. Our findings are consistent with the relationship between photo quenching and SCM. This phenomenon that zooplankton biovolume maxima are above the SCM has also been found in other sea areas, but detailed reasons for this mismatch are not clear (<xref ref-type="bibr" rid="B24">Herman, 1983</xref>; <xref ref-type="bibr" rid="B49">Roman et&#xa0;al., 1986</xref>; <xref ref-type="bibr" rid="B23">Harris, 1988</xref>; <xref ref-type="bibr" rid="B5">Briseno-Avena et&#xa0;al., 2020</xref>).</p>
</sec>
<sec id="s5_3">
<title>Size-Dependent Distribution of Zooplankton</title>
<p>The results on size&#x2013;distribution relationships of zooplankton reveal the trend that smaller plankton is greatly associated with stratification while larger plankton tend to be less associated with stratification (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). In the size range of less than 500 &#x3bc;m, there are primarily composed of phytoplankton and small zooplankton. Both phytoplankton and small zooplankton have very limited mobility. Their vertical distributions are dependent on density differences between plankton and ambient water and mixing. At the pycnocline, the rapid density increase leads to an accumulation of biomass. In the pycnocline, it is also difficult for the small-sized zooplankton, such as ciliates, to cross the stratification and move vertically because of their weak capability to overcome buoyancy forces. <xref ref-type="bibr" rid="B60">Trudnowska et&#xa0;al. (2016)</xref> reported that 0.3- to 0.8-mm particles aggregated at density discontinuities to facilitate their retention of their location. Larger zooplankton, such as copepods or krill larvae, and have strong swimming ability. They can move vertically in the water column by controlling their buoyancy, possessing a competitive advantage for food (<xref ref-type="bibr" rid="B70">Yayanos et&#xa0;al., 1978</xref>; <xref ref-type="bibr" rid="B47">Pond and Tarling, 2011</xref>). Overall, the biovolume concentrations of large particles in the deep water were reduced less than those of small particles, indicating their capabilities of grazing and swimming.</p>
</sec>
<sec id="s5_4">
<title>Regional Variations in Plankton Community</title>
<p>A normalized size spectrum provides two important parameters, slope and intercept, with an assumption of linearity (<xref ref-type="bibr" rid="B46">Platt and Denman, 1977</xref>; <xref ref-type="bibr" rid="B77">Zhou and Huntley, 1997</xref>; <xref ref-type="bibr" rid="B74">Zhou, 2006</xref>). The intercept is interpreted as total abundance while the slope is interpreted as the community size structure. The variations of slopes and intercepts in the water column exhibited regional differences. In the off-shelf surface water, the primary productivity and biovolume concentrations (smaller intercepts) in the surface water were lower due to the oligotrophic condition, and the slopes of NBVS were flatter as an indicator of lower small-sized plankton proportion. Total abundance was highest in the off-shelf SCM. The slopes of NBVS were steeper, indicating not only more small, lower trophic particulate organic matter available to feed grazers but also lower energy transfer efficiency or fewer trophic levels (<xref ref-type="bibr" rid="B74">Zhou, 2006</xref>; <xref ref-type="bibr" rid="B2">Atkinson et&#xa0;al., 2020</xref>).</p>
<p>In contrast to the persistent and stable stratification in the off-shelf area, the shelf region was affected by various factors such as upwellings, terrestrial runoffs, and sediment resuspensions. The size structures in the water columns exhibited homogeneity. Total abundance was high in both the mixed and subsurface layers, with small-sized plankton dominating the community. These implied a higher potential productivity and more herbivorous zooplankton of the entire water column on the shelf (<xref ref-type="bibr" rid="B74">Zhou, 2006</xref>; <xref ref-type="bibr" rid="B59">Trudnowska et&#xa0;al., 2014</xref>). Onshore&#x2013;offshore variations in the abundance, predominant species, and richness of zooplankton in northern SCS have been reported (<xref ref-type="bibr" rid="B73">Zhang et&#xa0;al., 2009</xref>). Regional differences in zooplankton community size structure might be attributed to differences in phytoplankton communities. It has been indicated that microphytoplankton with high concentration on the shelf gradually shifted to picophytoplankton dominated in phytoplankton community in open sea (<xref ref-type="bibr" rid="B16">Dong et&#xa0;al., 2018</xref>). In the shelf region, small copepods increased their proportion in the community by aggregation or reproduction because they preferred to feed on microphytoplankton rather than on picophytoplankton (<xref ref-type="bibr" rid="B7">Calbet and Landry, 2004</xref>; <xref ref-type="bibr" rid="B44">Pan et&#xa0;al., 2017</xref>).</p>
</sec>
<sec id="s5_5">
<title>Effects of Typhoon</title>
<p>The typhoon-induced destratification was evident as well-mixed water columns on the shelf along transect S2 in <xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4</bold>
</xref> and <xref ref-type="fig" rid="f8">
<bold>8</bold>
</xref>. Both the bottom of the mixed layer and SCM deepened to the sea bottom about 70 m after the typhoon. The small particle concentrations measured by the LOPC indicated high values near the bottom, implying that the SCM was related to re-suspension of settled materials (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6F</bold>
</xref>). The chlorophyll concentrations on the shelf increased after the typhoon. In the previous study on nutrients about the &#x201c;Mangkhut&#x201d; event, nutrients increased significantly (nitrate and phosphate increased by about 80% and 36%) in the shelf region due to the impact of the typhoon (<xref ref-type="bibr" rid="B30">Kuss et&#xa0;al., 2021</xref>). In the SCS, the growth of phytoplankton was limited by nitrogen and the increase of nitrate was considered to be the key precondition for the blooms in oligotrophic water (<xref ref-type="bibr" rid="B44">Pan et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B36">Liu and Tang, 2018</xref>). After the typhoon, the oligotrophic algae (mainly picophytoplankton) in the oligotrophic waters decreased significantly, and the microphytoplankton became the dominant species (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2009</xref>).</p>
<p>The stirring of the typhoon caused the steeper slopes and the higher intercepts of the upper layer on the shelf (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>). The enhanced abundance in the upper layer should be a result of the nutrients supplemented by the typhoon process promoting the growth and reproduction of phytoplankton and thus small zooplankton reflecting a positive change as a result of additional food. The doubling rates of phytoplankton and zooplankton are typically 2 to 10 days in the size range of our study (<xref ref-type="bibr" rid="B27">Hirst and Bunker, 2003</xref>; <xref ref-type="bibr" rid="B75">Zhou et&#xa0;al., 2010b</xref>; <xref ref-type="bibr" rid="B34">Lin et&#xa0;al., 2013</xref>). The time difference between the typhoon and sampling at shelf stations 29&#x2013;34 was approximately 4&#x2013;5 days. The steeper slopes might imply a decrease in trophic transfer efficiency or an increase in herbivorous species as the phytoplankton community was altered (<xref ref-type="bibr" rid="B74">Zhou, 2006</xref>; <xref ref-type="bibr" rid="B59">Trudnowska et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B2">Atkinson et&#xa0;al., 2020</xref>), whereas the decrease in abundance in the layer deeper than 80 m may be due to the mixing, accelerating the settling of large-sized zooplankton, resulting in steeper slopes.</p>
<p>We took it for granted that mixing would have a positive effect on the abundance of the off-shelf region, but this did not turn out to be the result. The abundance of plankton at the off-shelf sites presented little difference from before, which was consistent with the previous results. <xref ref-type="bibr" rid="B30">Kuss et&#xa0;al. (2021)</xref> have reported that the changes of nutrients and POC in the off-shelf area after the typhoon were not significant or even decreased in this typhoon event. Therefore, in the continental slope area, the typhoon process did not promote plankton reproduction. Along with the deepening of the mixed layer, the larger sinking flux of large-sized plankton may have reduced their proportion of the community, resulting in the steeper slopes of NBVS. Previous studies have reported differences in nutrient and phytoplankton responses between shelf and off-shelf regions. Nutrients on the shelf were more easily elevated to the surface than those on the off-shelf (<xref ref-type="bibr" rid="B18">Fogel et&#xa0;al., 1999</xref>). After the typhoon, large-sized phytoplankton increased more in the shelf region than in the open sea (<xref ref-type="bibr" rid="B42">Ma et&#xa0;al., 2021</xref>). These differences were also reflected in the zooplankton community and NBVS.</p>
</sec>
</sec>
<sec id="s6">
<title>Summary</title>
<p>The distributions of plankton NBVS in the northern SCS were strongly associated with shelf and off-shelf regions in the horizontal direction, and stratification, SCM, and depth of the water column in the vertical direction. In the shelf region, the primary production was enhanced by runoffs of nutrients and biota, and the biovolume concentrations in different size bins were higher and enhanced in SCM; the slopes of NBVS were vertically homogeneous and relatively steep, indicating a primary production dominated by the plankton community structure. In the off-shelf region under the oligotrophic condition, the biovolume concentrations of smaller plankton were featured with lower biovolume concentration and flatter NBVS in the surface water, higher biovolume concentration and steeper NBVS in SCM, and lower biovolume concentration and flatter NBVS in the deep water. Effects of mixing by typhoons on the plankton communities in the shelf and off-shelf areas can be interpreted in terms of slopes and intercepts of NBVS. The mixing steered by the typhoon changed the slope became steeper and intercept to higher for a size structured plankton community in the mixed layer and SCM, implying an increase in the proportion of small-sized plankton. In general, typhoons can enhance nutrient supply and primary production in the upper layer, resulting in high production of the plankton community. These will lead to a higher intercept and a steep slope of an NBVS. There have been few investigations on NBVS in the northern SCS due to the limitation of technical methods. Most studies on NBVS were established on the average biomass from the surface to a broad depth range covering mixed layer, pycnocline, and SCM, ignoring the changes in the vertical direction so far. This study found that the vertical variations of 2 NBVS parameters, i.e., intercept and slope, are strongly correlated with stratification, SCM, and depth.</p>
</sec>
<sec id="s7" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s8">
<title>Author Contributions</title>
<p>KC and MZ designed the original ideas presented in this manuscript. KC, YZ, and JW collected the field measurements. KC and CS analyzed the LOPC data. KC wrote the manuscript. MZ, JW, YZ, and ZZ revised and improved the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>This research work is funded by the International Cooperation of the National Natural Science Foundation of China (No. 41861134040), the National Program on Key Basic Research Project of China (973 Program, No. 2014CB441500), the Sino-German Cooperation in ocean and polar research-Megacity&#x2019;s fingerprint in Chinese marginal seas: Pollutant fingerprints and dispersal transformation (MEGAPOL), and the National Natural Science Foundation of China (No. 41706014). JW is supported by MEGAPOL with the contract number BMBf (03F0786A) Federal Ministry of Education and Research. MZ would like to acknowledge the support from the captains and crew of R/V Haiyang Dizhi 10. KC would like to acknowledge Shuangzhao Li and Zhiqiang Su for their help in data collection.</p>
</ack>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2022.870021/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2022.870021/full#supplementary-material</ext-link>
</p>
  <supplementary-material xlink:href="DataSheet_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
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