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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.864306</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Effects of Shellfish and Macro-Algae IMTA in North China on the Environment, Inorganic Carbon System, Organic Carbon System, and Sea&#x2013;Air CO<sub>2</sub> Fluxes</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Yi</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1471333"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhang</surname>
<given-names>Jihong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1617281"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wu</surname>
<given-names>Wenguang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhong</surname>
<given-names>Yi</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Hongmei</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Xinmeng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1617325"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Jun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Yongyu</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Key Laboratory for Sustainable Development of Marine Fisheries, Ministry of Agriculture/Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Dapeng Liu, Georgia Institute of Technology, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Junbo Zhang, Shanghai Ocean University, China; Zhe Pan, Hebei Agricultural University, China; Guang-Tao Zhang, Institute of Oceanology (CAS), China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Jihong Zhang, <email xlink:href="mailto:zhangjh@ysfri.ac.cn">zhangjh@ysfri.ac.cn</email> </p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Marine Fisheries, Aquaculture and Living Resources, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>29</day>
<month>04</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>864306</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>01</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>31</day>
<month>03</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Liu, Zhang, Wu, Zhong, Li, Wang, Yang and Zhang</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Liu, Zhang, Wu, Zhong, Li, Wang, Yang and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Shellfish and macro-algae integrated multi-trophic aquaculture (IMTA) contribute greatly to the sustainability of aquaculture. However, the effects of large-scale shellfish and macro-algae aquaculture on the functions of the ocean carbon sink are not clear. To clarify these effects, we studied the spatial and temporal changes of inorganic and organic carbon systems in seawater under different aquaculture modes (monoculture or polyculture of shellfish and macro-algae) in Sanggou Bay, together with the variation of other environmental factors. The results show that the summertime dissolved oxygen (DO) concentration in the shellfish culture zone was significantly lower than other zones (<italic>p</italic> &lt; 0.05), with a minimum value of 7.07 &#xb1; 0.25 mg/L. The variation of pH and total alkalinity (TA) were large across different culture modes, and the seawater in the shellfish culture zone had the lowest pH and TA than the other zones. Seasonal environment and aquaculture modes significantly affected the variation of dissolved inorganic carbon (DIC), CO<sub>2</sub> partial pressure (<italic>p</italic>CO<sub>2</sub>), dissolved organic carbon (DOC), and particulate organic carbon (POC) concentrations. The highest values of DIC, <italic>p</italic>CO<sub>2</sub>, and POC appeared in summer, and the lowest appeared in winter. For DOC concentration, the lowest value appeared in autumn. Spatially, DIC and <italic>p</italic>CO<sub>2</sub> were highest in the shellfish culture zone and lowest in the macro-algae culture zone, DOC was highest in the macro-algae culture zone and lowest in the shellfish culture zone, and POC was lower in the shellfish culture zone and macro-algae culture zone and higher in the remaining zones. The results of sea&#x2013;air CO<sub>2</sub> fluxes showed that except for the shellfish culture zone during summertime, which released CO<sub>2</sub> to the atmosphere, all culture zones were the sinks of atmospheric CO<sub>2</sub> during the culture period, with the whole bay being a strong CO<sub>2</sub> sink during autumn and winter. In summary, large-scale shellfish&#x2013;macro-algae IMTA plays an important role in the local carbon cycle and contributes to mitigating ocean acidification and hypoxia.</p>
</abstract>
<kwd-group>
<kwd>shellfish</kwd>
<kwd>macro-algae</kwd>
<kwd>aquaculture</kwd>
<kwd>carbon sink</kwd>
<kwd>Sanggou Bay</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="47"/>
<page-count count="11"/>
<word-count count="6597"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Anthropogenic CO<sub>2</sub> emissions have negative impacts on the environment, and the climate change caused by these emissions may be the most important global environmental problem currently facing mankind (<xref ref-type="bibr" rid="B19">Jiang et al., 2015</xref>). If there is no change in the status quo, longer heatwaves and more frequent extreme precipitation events are expected to occur (<xref ref-type="bibr" rid="B35">Petrovi&#x107; and Lobanov, 2020</xref>). The ocean is the largest sink of anthropogenic CO<sub>2</sub> (<xref ref-type="bibr" rid="B37">Sabine et&#xa0;al., 2004</xref>), as it absorbs approximately 30% of anthropogenically released CO<sub>2</sub> (<xref ref-type="bibr" rid="B11">Gruber et&#xa0;al., 2019</xref>). The total amount of CO<sub>2</sub> emitted by human activities in 2018 was approximately 11.5 &#xb1; 0.9 GtC, and approximately 2.6 &#xb1; 0.6 GtC was absorbed by the ocean (<xref ref-type="bibr" rid="B8">Friedlingstein et al., 2019</xref>). Consequently, the carbon sink function of the marine ecosystem has received increased attention (<xref ref-type="bibr" rid="B19">Jiang et&#xa0;al., 2015</xref>).</p>
<p>The absorption of CO<sub>2</sub> in the atmosphere by the ocean results in an increase in CO<sub>2</sub> on the surface of seawater, which disrupts the balance of the original carbon system and results in ocean acidification (<xref ref-type="bibr" rid="B9">Gattuso et&#xa0;al., 2018</xref>), and this affects the survival of calcified organisms and the sensory abilities of fish (<xref ref-type="bibr" rid="B3">Bignami et&#xa0;al., 2013</xref>). The large-scale aquaculture, especially seaweed farming, can alter the ability of the marine ecosystem to absorb CO<sub>2</sub> and alleviate ocean acidification at the local scale (<xref ref-type="bibr" rid="B9">Gattuso et&#xa0;al., 2018</xref>). Macro-algae can absorb excess CO<sub>2</sub> through photosynthesis and increase the pH of nearby water through physiological processes (<xref ref-type="bibr" rid="B23">Krause-Jensen et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B22">Koweek et&#xa0;al., 2017</xref>). During their growth stage, they also release a large amount of dissolved organic carbon (DOC), and this DOC can enter the food web or form refractory dissolved organic carbon (RDOC), thus remaining in the seawater for a long time and eventually resulting in carbon sequestration (<xref ref-type="bibr" rid="B46">Zhang et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B29">Li et&#xa0;al., 2018</xref>). Large-scale seaweed farming can strengthen the ocean carbon sink function and prevent ocean acidification (<xref ref-type="bibr" rid="B5">Duarte et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B43">Xiao et&#xa0;al., 2021</xref>). However, a large-scale macro-algae culture can also result in the excessive consumption of dissolved inorganic carbon (DIC), nitrogen, phosphorus, and other nutrients (<xref ref-type="bibr" rid="B47">Zou et&#xa0;al., 2004</xref>).</p>
<p>Integrated multi-trophic aquaculture (IMTA) is an effective approach for overcoming the problems associated with the excessive consumption of nutrients in macro-algae culture and increasing the sustainability of macro-algae aquaculture (<xref ref-type="bibr" rid="B2">Barrington et&#xa0;al., 2010</xref>). The shellfish&#x2013;macro-algae IMTA model has been highly successful and is the most economically feasible solution for recovering nutrients in the open water (<xref ref-type="bibr" rid="B7">Fang&#xa0;et&#xa0;al., 2020</xref>). The nutrients released by shellfish can be fully absorbed and utilized by macro-algae. O<sub>2</sub> and debris produced by macro-algae and the increased water pH promote the survival and growth of shellfish. Shellfish&#x2013;macro-algae aquaculture is thus an economically efficient and environmentally friendly form of aquaculture (<xref ref-type="bibr" rid="B39">Tang et&#xa0;al., 2011</xref>). There is growing evidence that the CaCO<sub>3</sub> shells generated during the calcification process of shellfish growth can remove carbon from the coastal ecosystem, thus improving the carbon absorption capacity of the shelf-edge sea, and significantly affect the carbon cycle of coastal ecosystems (<xref ref-type="bibr" rid="B39">Tang et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B13">Han et&#xa0;al., 2020</xref>). However, the impact of the CO<sub>2</sub> released during shellfish respiration and calcification on the carbon sink function of the marine ecosystem remains controversial. There have been reports that pure shellfish culture may be an important additional source of CO<sub>2</sub> in seawater and disrupt the balance of the local carbonate system, which affects the carbon sink capacity of marine ecosystems (<xref ref-type="bibr" rid="B12">Han et&#xa0;al., 2017</xref>).</p>
<p>The ocean is the largest carbon pool in the world; it thus plays an important role in regulating global climate change. However, large-scale aquaculture methods can vary in their effects on the carbon sink function of marine ecosystems (<xref ref-type="bibr" rid="B18">Jiang et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B13">Han et&#xa0;al., 2020</xref>). The exchange of CO<sub>2</sub> at the sea&#x2013;air interface is a key ocean carbon cycle process, and its exchange flux is essential for understanding the transfer of CO<sub>2</sub> in seawater, as well as the source and sink effects of the marine ecosystem on atmospheric CO<sub>2</sub> (<xref ref-type="bibr" rid="B25">Li et&#xa0;al., 2005</xref>). Most current studies on CO<sub>2</sub> flux have focused on the ocean or macro-algae culture (<xref ref-type="bibr" rid="B18">Jiang et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B43">Xiao et&#xa0;al., 2021</xref>); research on the effects of the shellfish&#x2013;macro-algae aquaculture mode on CO<sub>2</sub> exchange flux and the carbon cycle needs further study (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). Additionally, because the concentration of DIC in seawater is higher than that of particulate organic carbon (POC) and DOC (<xref ref-type="bibr" rid="B6">Eglinton and Repeta, 2003</xref>), most studies of the role of shellfish&#x2013;macro-algae aquaculture in the carbon cycle have focused on the inorganic carbon cycle; by contrast, few studies have examined the effect of shellfish&#x2013;macro-algae aquaculture on the organic carbon cycle (<xref ref-type="bibr" rid="B18">Jiang et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B19">Jiang et&#xa0;al., 2015</xref>; Fang and Jiang, 2021; <xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). The inorganic carbon pump only mediates the migration of CO<sub>2</sub> from the atmospheric carbon pool to the ocean carbon pool, and the CO<sub>2</sub> that enters the ocean must be stored by the biological pump to achieve long-term storage (<xref ref-type="bibr" rid="B15">Honda, 2003</xref>). Therefore, the organic carbon cycle also plays an important role in the marine biological carbon sink, so attention should also be paid to the cycling changes of organic carbon in the breeding process (<xref ref-type="bibr" rid="B26">Liu et&#xa0;al., 2021</xref>). Nevertheless, there are few reports on overall effects of aquaculture on inorganic and organic carbon cycles.</p>
<p>In this study, seasonal changes in the inorganic and organic carbon cycles in the kelp aquaculture zone, shellfish culture zone, and shellfish&#x2013;macro-algae polyculture zone; the CO<sub>2</sub> flux of different aquaculture modes in different seasons; and the effects of large-scale aquaculture on the carbon sink and water environment of the marine ecosystem were examined in Sanggou Bay, which is a typical shellfish&#x2013;macro-algae IMTA area in northern China. The results of this study provide new insights that aid our understanding of the role of the shellfish&#x2013;macro-algae aquaculture in the marine carbon cycle and could be used to optimize the marine carbon sink function and the sustainability of aquaculture.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="s2_1">
<title>Study Area and Sampling Stations</title>
<p>Located on the east side of Shandong Peninsula in eastern China (37&#xb0;01&#x2032;~37&#xb0;09&#x2032; N, 122&#xb0;24&#x2032;~122&#xb0;35&#x2032; E), Sanggou Bay covers an area of approximately 144 km<sup>2</sup> and has an average water depth of 7.5&#xa0;m (<xref ref-type="bibr" rid="B45">Zhang et&#xa0;al., 2009</xref>). Kelp (<italic>Saccharina japonica</italic>), Pacific oysters (<italic>Crassostrea gigas</italic>), and scallops (<italic>Chlamys farreri</italic>) are the main marine species produced in this region (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). Currently, Sanggou Bay consists of a shellfish culture zone (inside the bay), macro-algae culture zone (outside the bay), and shellfish&#x2013;macro-algae polyculture zone (in the middle of the bay) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The culture cycle of kelp is from autumn to the following summer (harvest usually begins in May and is completed by early July), and the culture cycle of shellfish is divided into one or two years depending on the actual situation, with seedlings sown in spring and harvested in autumn each year.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Sampling stations in Sanggou Bay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-864306-g001.tif"/>
</fig>
<p>Four on-site surveys were conducted in Sanggou Bay in April (spring), July (summer), October (autumn), and January (winter) of 2019. Each survey was conducted on a survey ship, and two sections were surveyed at the same time in the direction of the coastal current at peak tide. The survey stations are shown in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>; each aquaculture zone contained four stations, and the control area outside the bay also included four stations.</p>
</sec>
<sec id="s2_2">
<title>Analysis Method</title>
<p>A water quality analyzer (EXO2, YSI, Yellow Spring, OH, USA) was used on-site to measure the dissolved oxygen (DO), water temperature, pH, salinity, and other indicators. CO<sub>2</sub> partial pressure (<italic>p</italic>CO<sub>2</sub>) on the surface water was measured with a CO<sub>2</sub> partial pressure meter (OceanPack; Csubctech, Kiel, Germany). Water samples were collected with a water sample collector (KC,&#xa0;Silkeborg, Denmark). The Whatman GF/F membrane and cellulose acetate filter membrane were used for suction filtration on-site, and 200 and 1,000 ml surface seawater samples were filtered. After the Whatman GF/F membrane was acidified, the POC in the water was measured with an elemental analyzer (EL; Elementar, Langenselbold, Germany). The filtrate was transferred into a 30&#xa0;ml jar that had been burned at 450&#xb0;C for 4&#xa0;h in advance, and an appropriate amount of saturated HgCl<sub>2</sub> solution was added with a syringe to inhibit microbial activity. The jar was then tightly capped and sealed with a sealing film, and the DIC and DOC were determined by a total organic carbon analyzer (Multi N/C; Jena, Jena, Germany). The cellulose acetate filters and water samples after suction filtration were stored in a refrigerator at 4&#xb0;C for the analysis of chlorophyll (Chl-<italic>a</italic>) and total alkalinity (TA). The fluorescence method was used to determine the Chl-<italic>a</italic> concentration. TA was measured using an automatic potentiometric titration method (848 Titrino Plus; Metrohm, Herisau, Switzerland) with a measurement accuracy of &#xb1; 5 mmol/L. All samples collected were processed the same day and stored in a low-temperature freezer. The samples that required instrumental analyses were analyzed within a week of collection.</p>
<p>The sea&#x2013;air interface CO<sub>2</sub> exchange flux was estimated using the following formula: <italic>F=k&#xd7;&#x3b1;s&#xd7;&#x394;pCO<sub>2</sub>
</italic>, where <italic>F</italic> (mmol/m<sup>2</sup>&#xb7;d) is the CO<sub>2</sub> exchange flux at the sea&#x2013;air interface, which represents the CO<sub>2</sub> exchange flux (the intensity of the atmospheric CO<sub>2</sub> source and sink). The positive and negative signs indicate the direction of the source and sink. When seawater absorbs CO<sub>2</sub> from the atmosphere and acts as a sink, <italic>F</italic> is a negative value. When seawater releases CO<sub>2</sub> into the atmosphere and acts as a source, <italic>F</italic> is a positive value. <italic>k</italic> (cm/h) is the gas transmission speed at the sea&#x2013;air interface; &#x3b1;s (mol/kg&#xb7;atm) is the solubility coefficient of CO<sub>2</sub> in seawater, which is a function related to temperature and salinity and is calculated using the <xref ref-type="bibr" rid="B41">Weiss (1974)</xref> formula; and <italic>&#x394;pCO<sub>2</sub>
</italic> is the difference between seawater and <italic>p</italic>CO<sub>2</sub> in the atmosphere. In this study, the value of <italic>p</italic>CO<sub>2</sub> in the atmosphere was 410 &#xb5;atm (<uri xlink:href="https://keelingcurve.ucsd.edu/">https://keelingcurve.ucsd.edu/</uri>), and the gas transmission speed (<italic>k</italic>) at the sea&#x2013;air interface was the average value (10.3) of the continental shelf sea area (<xref ref-type="bibr" rid="B18">Jiang et&#xa0;al., 2013</xref>).</p>
</sec>
<sec id="s2_3">
<title>Data Analysis</title>
<p>Statistical analysis was performed using SPSS 17.0. Analysis of variance (ANOVA) was used to analyze the effects of season and zone on environmental factors, carbon components, <italic>p</italic>CO<sub>2</sub>, and sea&#x2013;air CO<sub>2</sub> flux. According to the results of the homogeneity test, Tukey&#x2019;s honestly significant difference or Tamhane&#x2019;s T<sub>2</sub> test was used to evaluate the significance of differences between groups (<italic>p &lt;</italic>0.05) after ANOVA.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Spatiotemporal Variability in Environmental Parameters</title>
<p>
<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref> shows the averages for the environmental factors in the study area. The water temperature decreased from the inside of the bay to the outside of the bay in spring and summer, while the opposite was true in autumn and winter. The salinity in the summer was low because of the higher rainfall and land runoff, and salinity in the entire bay in the other seasons did not significantly vary (<italic>p</italic>&gt;0.05). The season (<italic>F</italic>=5.10, <italic>p</italic>&lt;0.05) and aquaculture zone (<italic>F</italic>=4.59, <italic>p</italic>&lt;0.05) significantly affected the DO concentration of surface seawater, and the interaction between the two on the DO concentration was significant (seasonal &#xd7; zone: <italic>F</italic>=8.32, <italic>p</italic>&lt;0.05). The Chl-<italic>a</italic> concentration showed pronounced seasonal variation (<italic>F</italic>=14.59, <italic>p</italic>&lt;0.05). Although the Chl-<italic>a</italic> concentration of the shellfish culture zone appeared to be lower than the other aquaculture zones, there was no significant effect of the aquaculture zone on the Chl-<italic>a</italic> concentration (<italic>F</italic>=2.16, <italic>p</italic>=0.136). The aquaculture mode significantly (<italic>F</italic>=11.79, <italic>p</italic>&lt;0.05) affected the pH. The pH was lowest in the shellfish culture zone and highest in the macro-algae culture zone. The aquaculture mode (<italic>F</italic>=6.32, <italic>p</italic>&lt;0.05) had a significant impact on TA, and the TA was significantly lower in the shellfish culture zone than in the other regions. Additionally, the season (<italic>F</italic>=257.33, <italic>p</italic>&lt;0.05) had a significant effect on changes in TA. TA decreases with temperature increases.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Seasonal variation of average value of different environmental parameters in Sanggou Bay.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Season</th>
<th valign="top" align="center">Zone</th>
<th valign="top" align="center">T (&#xb0;C)</th>
<th valign="top" align="center">S</th>
<th valign="top" align="center">DO (mg/L)</th>
<th valign="top" align="center">Chl-<italic>a</italic> (&#x3bc;g/L)</th>
<th valign="top" align="center">pH</th>
<th valign="top" align="center">TA (&#x3bc;mol/L)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<bold>Spring</bold>
</td>
<td valign="top" align="left">Shellfish</td>
<td valign="top" align="center">15.58 &#xb1; 0.21</td>
<td valign="top" align="center">31.66 &#xb1; 0.05</td>
<td valign="top" align="center">8.30 &#xb1; 0.09</td>
<td valign="top" align="center">0.50 &#xb1; 0.11</td>
<td valign="top" align="center">8.25 &#xb1; 0.08</td>
<td valign="top" align="center">2,207.87 &#xb1; 7.86</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Shellfish and macro-algae</td>
<td valign="top" align="center">14.98 &#xb1; 1.71</td>
<td valign="top" align="center">31.86 &#xb1; 0.12</td>
<td valign="top" align="center">8.47 &#xb1; 0.07</td>
<td valign="top" align="center">0.48 &#xb1; 0.05</td>
<td valign="top" align="center">8.35 &#xb1; 0.09</td>
<td valign="top" align="center">2,226.54 &#xb1; 27.22</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Macro-algae</td>
<td valign="top" align="center">12.84 &#xb1; 1.02</td>
<td valign="top" align="center">31.87 &#xb1; 0.07</td>
<td valign="top" align="center">8.51 &#xb1; 0.15</td>
<td valign="top" align="center">0.55 &#xb1; 0.02</td>
<td valign="top" align="center">8.53 &#xb1; 0.01</td>
<td valign="top" align="center">2,330.73 &#xb1; 26.79</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Control</td>
<td valign="top" align="center">12.02 &#xb1; 0.54</td>
<td valign="top" align="center">31.91 &#xb1; 0.22</td>
<td valign="top" align="center">8.44 &#xb1; 0.12</td>
<td valign="top" align="center">1.28 &#xb1; 0.17</td>
<td valign="top" align="center">8.39 &#xb1; 0.01</td>
<td valign="top" align="center">2,322.11 &#xb1; 36.91</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Summer</bold>
</td>
<td valign="top" align="left">Shellfish</td>
<td valign="top" align="center">24.81 &#xb1; 0.62</td>
<td valign="top" align="center">30.49 &#xb1; 0.09</td>
<td valign="top" align="center">7.07 &#xb1; 0.25</td>
<td valign="top" align="center">3.90 &#xb1; 0.28</td>
<td valign="top" align="center">7.73 &#xb1; 0.36</td>
<td valign="top" align="center">2,170.66 &#xb1; 9.10</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Shellfish and macro-algae</td>
<td valign="top" align="center">23.41 &#xb1; 0.87</td>
<td valign="top" align="center">30.78 &#xb1; 0.05</td>
<td valign="top" align="center">7.19 &#xb1; 0.04</td>
<td valign="top" align="center">4.11 &#xb1; 0.71</td>
<td valign="top" align="center">7.97 &#xb1; 0.01</td>
<td valign="top" align="center">2,209.36 &#xb1; 9.38</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Macro-algae</td>
<td valign="top" align="center">21.93 &#xb1; 0.13</td>
<td valign="top" align="center">31.26 &#xb1; 0.09</td>
<td valign="top" align="center">8.13 &#xb1; 0.05</td>
<td valign="top" align="center">5.70 &#xb1; 0.02</td>
<td valign="top" align="center">8.12 &#xb1; 0.03</td>
<td valign="top" align="center">2,231.58 &#xb1; 3.09</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Control</td>
<td valign="top" align="center">20.63 &#xb1; 0.44</td>
<td valign="top" align="center">31.82 &#xb1; 0.11</td>
<td valign="top" align="center">8.13 &#xb1; 0.02</td>
<td valign="top" align="center">5.28 &#xb1; 0.45</td>
<td valign="top" align="center">8.09 &#xb1; 0.01</td>
<td valign="top" align="center">2,243.40 &#xb1; 5.81</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Autumn</bold>
</td>
<td valign="top" align="left">Shellfish</td>
<td valign="top" align="center">10.88 &#xb1; 0.61</td>
<td valign="top" align="center">31.55 &#xb1; 0.10</td>
<td valign="top" align="center">8.79 &#xb1; 0.04</td>
<td valign="top" align="center">0.58 &#xb1; 0.11</td>
<td valign="top" align="center">8.12 &#xb1; 0.01</td>
<td valign="top" align="center">2,257.62 &#xb1; 16.84</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Shellfish and macro-algae</td>
<td valign="top" align="center">12.36 &#xb1; 0.25</td>
<td valign="top" align="center">31.60 &#xb1; 0.06</td>
<td valign="top" align="center">8.75 &#xb1; 0.19</td>
<td valign="top" align="center">0.61 &#xb1; 0.05</td>
<td valign="top" align="center">8.27 &#xb1; 0.06</td>
<td valign="top" align="center">2,283.06 &#xb1; 21.57</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Macro-algae</td>
<td valign="top" align="center">12.85 &#xb1; 0.07</td>
<td valign="top" align="center">31.58 &#xb1; 0.05</td>
<td valign="top" align="center">8.82 &#xb1; 0.19</td>
<td valign="top" align="center">0.42 &#xb1; 0.02</td>
<td valign="top" align="center">8.40 &#xb1; 0.02</td>
<td valign="top" align="center">2,317.02 &#xb1; 35.09</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Control</td>
<td valign="top" align="center">13.47 &#xb1; 0.12</td>
<td valign="top" align="center">31.61 &#xb1; 0.02</td>
<td valign="top" align="center">8.29 &#xb1; 0.06</td>
<td valign="top" align="center">0.62 &#xb1; 0.11</td>
<td valign="top" align="center">8.30 &#xb1; 0.06</td>
<td valign="top" align="center">2,336.18 &#xb1; 17.83</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Winter</bold>
</td>
<td valign="top" align="left">Shellfish</td>
<td valign="top" align="center">3.48 &#xb1; 0.14</td>
<td valign="top" align="center">31.17 &#xb1; 0.03</td>
<td valign="top" align="center">8.46 &#xb1; 0.17</td>
<td valign="top" align="center">0.59 &#xb1; 0.13</td>
<td valign="top" align="center">8.03 &#xb1; 0.07</td>
<td valign="top" align="center">2,301.41 &#xb1; 99.66</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Shellfish and macro-algae</td>
<td valign="top" align="center">3.83 &#xb1; 0.04</td>
<td valign="top" align="center">31.18 &#xb1; 0.06</td>
<td valign="top" align="center">8.50 &#xb1; 0.21</td>
<td valign="top" align="center">0.72 &#xb1; 0.02</td>
<td valign="top" align="center">8.19 &#xb1; 0.06</td>
<td valign="top" align="center">2,311.75 &#xb1; 24.88</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Macro-algae</td>
<td valign="top" align="center">4.58 &#xb1; 0.24</td>
<td valign="top" align="center">31.20 &#xb1; 0.07</td>
<td valign="top" align="center">8.53 &#xb1; 0.04</td>
<td valign="top" align="center">0.61 &#xb1; 0.56</td>
<td valign="top" align="center">8.37 &#xb1; 0.03</td>
<td valign="top" align="center">2,354.02 &#xb1; 48.78</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Control</td>
<td valign="top" align="center">6.53 &#xb1; 1.13</td>
<td valign="top" align="center">32.19 &#xb1; 0.05</td>
<td valign="top" align="center">8.11 &#xb1; 0.14</td>
<td valign="top" align="center">0.82 &#xb1; 0.55</td>
<td valign="top" align="center">8.25 &#xb1; 0.01</td>
<td valign="top" align="center">2,377.44 &#xb1; 20.35</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3_2">
<title>Spatiotemporal Variability in Dissolved Inorganic Carbon and <italic>p</italic>CO<sub>2</sub>
</title>
<p>The season and aquaculture mode significantly affected the spatiotemporal changes in DIC (season: <italic>F</italic>=325.75, <italic>p</italic>&lt;0.05; zone: <italic>F</italic>=7.18, <italic>p</italic>&lt;0.05; <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>) and <italic>p</italic>CO<sub>2</sub> (season: <italic>F</italic>=38.97, <italic>p</italic>&lt; 0.05; zone: <italic>F</italic>=11.79, <italic>p</italic>&lt;0.05; <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>) in the surface seawater of Sanggou Bay, and the interaction between the season and aquaculture mode also had a significant effect on DIC and <italic>p</italic>CO<sub>2</sub> (DIC: season &#xd7; zone: <italic>F</italic>= 9.75, <italic>p</italic>&lt;0.05; <italic>p</italic>CO<sub>2</sub>: season &#xd7; zone: <italic>F</italic>=4.39, <italic>p</italic>&lt;0. 05). DIC in the surface seawater of Sanggou Bay was highest in summer, followed by autumn, spring, and winter; <italic>p</italic>CO<sub>2</sub> was highest in summer, followed by spring, autumn, and winter. The surface seawater DIC concentration and <italic>p</italic>CO<sub>2</sub> were highest in the shellfish culture zone and lowest in the macro-algae culture zone. The <italic>p</italic>CO<sub>2</sub> concentration in the control area did not significantly differ from that in the shellfish&#x2013;macro-algae polyculture zone (<italic>p</italic>&gt;0.05). In sum, the <italic>p</italic>CO<sub>2</sub> level in the whole bay increased with temperature.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Horizontal distribution of DIC (&#x03BC;mol/L) for the <bold>(A)</bold> spring, <bold>(B)</bold> summer, <bold>(C)</bold> autumn, and <bold>(D)</bold> winter surface water in Sanggou Bay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-864306-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Horizontal distribution of <italic>p</italic>CO<sub>2</sub> (&#x03BC;atm) for the <bold>(A)</bold> spring, <bold>(B)</bold> summer, <bold>(C)</bold> autumn, and <bold>(D)</bold> winter surface water in Sanggou Bay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-864306-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Spatiotemporal Variability of Dissolved Organic Carbon and Particulate Organic Carbon</title>
<p>Similar to the change law of DIC and <italic>p</italic>CO<sub>2</sub>, different seasons and aquaculture modes also significantly affect the distributions of DOC (season: <italic>F</italic>=35.88, <italic>p</italic>&lt; 0. 05, zone: <italic>F</italic>=4.32, <italic>p</italic>&lt;0. 05, <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>) and POC (season: <italic>F</italic>=11.23, <italic>p</italic>&lt; 0. 05, zone: <italic>F</italic>=4.59, <italic>p</italic>&lt;0. 05, <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>) in the surface seawater of Sanggou Bay. The season and aquaculture mode have a significant interaction effect on DOC (season &#xd7; zone: <italic>F</italic>=8.07, <italic>p</italic>&lt;0. 05) and POC (season &#xd7; zone: <italic>F</italic>=8.07, <italic>p</italic>&lt;0. 05). Different from DIC and <italic>p</italic>CO<sub>2</sub>, the DOC concentration in winter and summer is relatively high, the DOC concentration in spring and autumn is relatively low, and the autumn DOC concentration is the lowest. From a spatial point of view, the overall performance of different aquaculture zones is that the DOC concentration in the macro-algae culture zone is the highest, and the DOC concentration in the shellfish culture zone is the lowest. Nevertheless, the DOC concentration in the shellfish culture zone in summer was significantly higher than those in other areas (<italic>p</italic>&lt;0.05). The POC concentration in the surface seawater of Sanggou Bay follows the sequence of summer &gt; spring &gt; autumn &gt; winter. From the perspective of spatial changes, the POC concentration in the&#xa0;shellfish culture zone and macro-algae culture zone surface seawater is lower, and the POC concentration in the shellfish&#x2013;macro-algae polyculture zone and control area is higher.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Horizontal distribution of DOC (&#x03BC;mol/L) for the <bold>(A)</bold> spring, <bold>(B)</bold> summer, <bold>(C)</bold> autumn, and <bold>(D)</bold> winter surface water in Sanggou Bay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-864306-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Horizontal distribution of POC (mg/L) for the <bold>(A)</bold> spring, <bold>(B)</bold> summer, <bold>(C)</bold> autumn, <bold>(D)</bold> winter surface water in Sanggou Bay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-864306-g005.tif"/>
</fig>
</sec>
<sec id="s3_4">
<title>Spatiotemporal Variability in Sea&#x2013;Air CO<sub>2</sub> Flux</title>
<p>
<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref> shows the annual sea&#x2013;air CO<sub>2</sub> flux in Sanggou Bay. In spring, the shellfish culture zone was a weak sink of atmospheric CO<sub>2</sub>. In summer, the shellfish culture zone and shellfish&#x2013;macro-algae polyculture zone were the sources of atmospheric CO<sub>2</sub>. In autumn and winter, the entire bay was a strong sink of atmospheric CO<sub>2</sub>, and the macro-algae culture zone played the largest role in gathering atmospheric CO<sub>2</sub>. The season (<italic>F</italic>=210.43, <italic>p</italic>&lt;0.05) and aquaculture mode (<italic>F</italic>=44.14, <italic>p</italic>&lt;0.05) had significant effects on the CO<sub>2</sub> flux, and the interaction between the two was significant (season &#xd7; zone: <italic>F</italic>=7.396, <italic>p</italic>&lt;0.05). The sea&#x2013;air CO<sub>2</sub> flux in Sanggou Bay varies differently between seasons, where a significant difference was concluded between spring and winter and between summer and autumn, and a highly significant difference was found between summer and winter. (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). Pearson correlation analysis revealed that changes in the CO<sub>2</sub> exchange flux at the sea&#x2013;air interface in different seasons were affected by different environmental factors (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). DIC and Chl-<italic>a</italic> were the most important factors in spring. In autumn and winter, pH and DIC were the most important factors. In&#xa0;summer, the sea&#x2013;air CO<sub>2</sub> flux was most significantly affected by Chl-<italic>a</italic>, TA, and DO. Throughout the year, water temperature and DIC were the key factors affecting sea&#x2013;air CO<sub>2</sub> exchange flux.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Seasonal variation in sea&#x2013;air CO<sub>2</sub>&#xa0;flux in Sanggou Bay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-864306-g006.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>
<italic>Post-hoc</italic> Tukey HSD tests for the seasonal data of sea&#x2013;air co<sub>2</sub> flux.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Variables</th>
<th valign="top" align="center">Source of Variability</th>
<th valign="top" align="center">Summer</th>
<th valign="top" align="center">Autumn</th>
<th valign="top" align="center">Winter</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="3" align="left">CO<sub>2</sub> flux</td>
<td valign="top" align="left">Spring</td>
<td valign="top" align="center">0.256</td>
<td valign="top" align="center">0.490</td>
<td valign="top" align="center">0.015<sup>*</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Summer</td>
<td valign="top" align="center"/>
<td valign="top" align="center">0.023<sup>*</sup>
</td>
<td valign="top" align="center">0.001<sup>**</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Autumn</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">0.177</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>*</sup>means significant difference, p&lt;0.05, <sup>**</sup>means highly significant difference, p&lt;0.01.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Pearson correlation coefficients between CO<sub>2</sub> sea&#x2013;air flux and environmental factors.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Season</th>
<th valign="top" align="center">Source of variability</th>
<th valign="top" align="center">SST</th>
<th valign="top" align="center">pH</th>
<th valign="top" align="center">DIC</th>
<th valign="top" align="center">Chl-<italic>a</italic>
</th>
<th valign="top" align="center">TA</th>
<th valign="top" align="center">DO</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">The whole year</td>
<td valign="top" rowspan="5" align="left">CO<sub>2</sub> flux</td>
<td valign="top" align="center">0.773<sup>**</sup>
</td>
<td valign="top" align="center">-0.233</td>
<td valign="top" align="center">0.488<sup>*</sup>
</td>
<td valign="top" align="center">0.264</td>
<td valign="top" align="center">0.437</td>
<td valign="top" align="center">-0.427</td>
</tr>
<tr>
<td valign="top" align="left">Spring</td>
<td valign="top" align="center">0.686</td>
<td valign="top" align="center">0.713</td>
<td valign="top" align="center">0.954<sup>*</sup>
</td>
<td valign="top" align="center">-0.913<sup>*</sup>
</td>
<td valign="top" align="center">0.634</td>
<td valign="top" align="center">-0.632</td>
</tr>
<tr>
<td valign="top" align="left">Summer</td>
<td valign="top" align="center">0.550</td>
<td valign="top" align="char" char="-">-0.385</td>
<td valign="top" align="center">0.688</td>
<td valign="top" align="center">-0.975<sup>**</sup>
</td>
<td valign="top" align="center">0.869<sup>*</sup>
</td>
<td valign="top" align="center">-0.942<sup>**</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Autumn</td>
<td valign="top" align="center">-0.064</td>
<td valign="top" align="char" char="-">-0.935<sup>*</sup>
</td>
<td valign="top" align="center">0.959<sup>**</sup>
</td>
<td valign="top" align="center">-0.782</td>
<td valign="top" align="center">0.160</td>
<td valign="top" align="center">-0.695</td>
</tr>
<tr>
<td valign="top" align="left">Winter</td>
<td valign="top" align="center">0.143</td>
<td valign="top" align="char" char="-">-0.905<sup>*</sup>
</td>
<td valign="top" align="center">0.994<sup>**</sup>
</td>
<td valign="top" align="center">-0.785</td>
<td valign="top" align="center">0.867</td>
<td valign="top" align="center">-0.733</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>*</sup>means significant difference, p&lt;0.05; <sup>**</sup>means highly significant difference, p&lt;0.01.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<sec id="s4_1">
<title>Effects of Shellfish&#x2013;Macro-Algae Aquaculture on Environmental Factors</title>
<p>Macro-algae can absorb DIC in seawater through photosynthesis, reduce <italic>p</italic>CO<sub>2</sub> levels, and increase the DO and pH of seawater. By contrast, the respiration and calcification of shellfish result in the release of CO<sub>2</sub> into seawater, increase DIC and <italic>p</italic>CO<sub>2</sub>, and reduce the pH (<xref ref-type="bibr" rid="B4">Delille et&#xa0;al., 2009</xref>). A macro-algae culture can effectively alleviate ocean acidification (<xref ref-type="bibr" rid="B43">Xiao et&#xa0;al., 2021</xref>). Calcified organisms (e.g., bivalves, corals) that are particularly susceptible to ocean acidification can benefit from these effects (<xref ref-type="bibr" rid="B24">Kroeker et&#xa0;al., 2013</xref>). Thus, the co-cultivation of bivalves and seaweeds in the IMTA system can protect bivalves from the effects of ocean acidification and provide them with sufficient oxygen. The IMTA system can also alleviate the pressure associated with the release of nutrients by bivalves into the environment, as the macro-algae in the system absorb nutrients (<xref ref-type="bibr" rid="B13">Han et&#xa0;al., 2020</xref>). It is important to note that the shellfish&#x2013;macro-algae IMTA model in the survey area has been based on the expansion of kelp culture. Because of the poor high-temperature resistance of kelp, large-scale shellfish farming is carried out for up to 4 months in the study area after kelp is harvested in summer. According to previous studies, the metabolism of shellfish is highest in July and August, which corresponds to the period when shellfish grow most vigorously. In addition, bacteria are most active under high-temperature conditions in summer, and the excrement of cultured shellfish is quickly decomposed, which increases the vulnerability of the shellfish culture zone to hypoxia and eutrophication (<xref ref-type="bibr" rid="B29">Li et&#xa0;al., 2018</xref>). Therefore, the large-scale shellfish culture in summer may impose substantial ecological pressures (<xref ref-type="bibr" rid="B26">Liu et&#xa0;al., 2021</xref>), and this was confirmed in this study. The pH and DO of the shellfish culture zone and shellfish&#x2013;macro-algae polyculture zone (actually, only shellfish is cultured in the polyculture zone) decreased to varying degrees in summer; the average pH of the shellfish culture zone was only 7.73, and the DO was 7.07 mg/L. The calcification rate of shellfish decreased by 13.5% when the pH decreased by 0.1 units, and shellfish are not able to synthesize shells when the pH is 7.3 (<xref ref-type="bibr" rid="B44">Zhang et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B40">Wahl et&#xa0;al., 2018</xref>). The growth of fish is also inhibited when the DO decreases to 5 mg/L, and the large-scale death of crustaceans may occur when DO decreases to 4 mg/L (<xref ref-type="bibr" rid="B38">Sugden, 2017</xref>). Therefore, changes in environmental factors associated with the aquaculture mode of Sanggou Bay in summer pose risks to cultured organisms such as shellfish and fish. The pH and DO of the shellfish culture zone in summer were 0.12-0.39 units and 0.94-1.06 mg/L lower compared with values from surrounding areas, respectively. The pH and DO in the macro-algae culture zone were 0.10-0.34 units and 0.03-0.53 mg/L higher compared with values in adjacent seas, respectively. Therefore, macro-algae culture can theoretically offset the impact of CO<sub>2</sub> produced by shellfish respiration and calcification on the pH and DO of the sea. Because of the high temperature of water in summer, kelp cannot grow. Thus, large macro-algae that can withstand high temperatures (e.g., <italic>Gracilaria lemaneiformis</italic>) needs to be bred to reduce the environmental impact of summer shellfish farming (<xref ref-type="bibr" rid="B26">Liu et&#xa0;al., 2021</xref>).</p>
<p>In other seasons, the environmental parameters tend to better because of the cultivation of macro-algae in the study area. Macro-algae culture can not only improve the environmental parameters but can also absorb the nutrients in water, which alleviates eutrophication (<xref ref-type="bibr" rid="B31">Mao et&#xa0;al., 2009</xref>). Previous studies have confirmed that the buffering effect of macro-algae culture is sufficient to partially offset the decrease in pH caused by ocean acidification in recent decades. Compared with natural seaweed systems, macro-algae culture has a greater potential to adapt to future fluctuations in the ocean pH (<xref ref-type="bibr" rid="B23">Krause-Jensen et&#xa0;al., 2016</xref>). However, the water exchange capacity in Sanggou Bay was weak because of the blocking effect of breeding facilities and cultured organisms (<xref ref-type="bibr" rid="B27">Liu et&#xa0;al., 2017</xref>); there is thus a need to ensure that the scale of macro-algae culture is not excessive to prevent the excessive consumption of nutrients. In autumn, some of the shellfish are harvested, which causes some nutrients to be removed, and kelp absorbs large amounts of nutrients in the early stages of growth. Therefore, the Chl-<italic>a</italic> concentration was lowest in autumn, indicating that even if shellfish ingestion is reduced at this time, macro-algae cultivation in the sea prevents the growth of phytoplankton. Therefore, the excessive expansion of macro-algae culture will restrict the growth of macro-algae; an appropriate amount of macro-algae culture is required for aquaculture to be environmentally friendly (<xref ref-type="bibr" rid="B7">Fang et&#xa0;al., 2020</xref>).</p>
</sec>
<sec id="s4_2">
<title>Effects of Shellfish&#x2013;Macro-Algae Aquaculture on the Inorganic Carbon Cycle in Seawater</title>
<p>The inorganic carbon system in the aquaculture zone undergoes various changes due to the physiological activities of shellfish and macro-algae. Large-scale macro-algae and bivalve farming has affected the sea&#x2013;air CO<sub>2</sub> exchange flux in Sanggou Bay. The shellfish and macro-algae biomass was highest in the winter, and this is when the sea&#x2013;air CO<sub>2</sub> exchange flux was the highest in the study area. The CO<sub>2</sub> exchange flux between the ocean and the atmosphere is the most important process determining the marine inorganic carbon budget (<xref ref-type="bibr" rid="B19">Jiang et&#xa0;al., 2015</xref>). Therefore, DIC is an important factor affecting the annual sea&#x2013;air CO<sub>2</sub> exchange flux in Sanggou Bay.</p>
<p>The physiological activities of some calcified organisms in their natural habitats can significantly affect the inorganic carbon cycle of the surrounding water (<xref ref-type="bibr" rid="B34">Page et&#xa0;al., 2019</xref>). Changes in the inorganic carbon cycle induced by shellfish culture are usually more pronounced than those in natural habitats because the density of cultured shellfish is much higher than that of naturally occurring species (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). Longer seawater residence times can also substantially affect changes in the marine inorganic carbon system (<xref ref-type="bibr" rid="B34">Page et&#xa0;al., 2019</xref>). The weak water exchange capacity of Sanggou Bay induces major changes in the inorganic carbon cycle in the shellfish culture zone (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). In all seasons, the lowest pH and TA and highest DIC and <italic>p</italic>CO<sub>2</sub> were observed in the shellfish culture zone. Although the CO<sub>2</sub> emitted by shellfish respiration does not affect the TA in seawater (<xref ref-type="bibr" rid="B44">Zhang et&#xa0;al., 2011</xref>), the calcification process of shellfish leads to a decrease in seawater TA, which limits the ability of seawater to absorb CO<sub>2</sub> and affects the carbonate balance (<xref ref-type="bibr" rid="B13">Han et&#xa0;al., 2020</xref>). Bivalves are the main cause of the decline in TA in Sanggou Bay, which may lead to an increase in the <italic>p</italic>CO<sub>2</sub> in the shellfish culture zone. Although bivalves absorb a certain amount of DIC during the calcification of synthetic shells, the DIC released during respiration is significantly higher (<xref ref-type="bibr" rid="B19">Jiang&#xa0;et&#xa0;al., 2015</xref>). Therefore, the respiration of a large number of bivalves in the bay may increase the accumulation and emission of inorganic carbon in the water environment (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). The sedimentation of organisms aggravates the bioburden of sediments, and the remineralization of sediments is an important source of DIC (<xref ref-type="bibr" rid="B19">Jiang et&#xa0;al., 2015</xref>). When the bivalves experience high summer temperatures, the DIC concentration in the shellfish culture zone is the highest due to physiological processes such as respiration and excretion. However, some studies have shown that the calcification process of bivalves can regulate the inorganic carbon cycle more than respiration under certain conditions. For example, oysters can remove inorganic carbon from seawater through calcification (<xref ref-type="bibr" rid="B36">Ren, 2014</xref>). The respiration of bivalves is weakened by decreases in temperature (e.g., winter), which explains the lack of differences in the concentration of DIC in the shellfish culture zone compared with that of other regions. This might also be one of the reasons why the sources and sinks of the sea&#x2013;air CO<sub>2</sub> flux in the shellfish culture zone change seasonally in this study. The effects of water temperature on the bay sea&#x2013;air CO<sub>2</sub> flux may not be mediated through physical effects, such as solubility, but instead through indirect effects, such as the physiological activities of cultured organisms.</p>
<p>The results regarding the sea&#x2013;air CO<sub>2</sub> flux in the shellfish culture zone in this study differed from those of previous studies. This might be caused by the different methods used for calculating the sea&#x2013;air CO<sub>2</sub> flux, including the gas transmission speed, the <italic>p</italic>CO<sub>2</sub> in the atmosphere, and the <italic>p</italic>CO<sub>2</sub> in the surface water. The acquisition of <italic>p</italic>CO<sub>2</sub> in the surface water is usually automatically obtained by software by monitoring parameters such as pH, temperature, TA, and salinity. Therefore, a small error in a certain parameter may have a substantial impact on the results. Studies of the same aquaculture zone in the same season have found that differences in <italic>p</italic>CO<sub>2</sub> in the surface water were greater than 50 &#x3bc;atm (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B43">Xiao et&#xa0;al., 2021</xref>). Therefore, <italic>p</italic>CO<sub>2</sub> in the water was directly measured by a CO<sub>2</sub> partial pressure meter, albeit some error in the absolute value is possible. The general patterns of <italic>p</italic>CO<sub>2</sub> in this study were relatively clear. Hence, we mainly focused on the different patterns of CO<sub>2</sub> flux and <italic>p</italic>CO<sub>2</sub> and did not discuss absolute values.</p>
<p>Macro-algae uses bicarbonate ions as an external carbon source for photosynthesis, ingests a large amount of DIC during growth, and affects the <italic>p</italic>CO<sub>2</sub> and TA in surface seawater (<xref ref-type="bibr" rid="B1">Axelsson et&#xa0;al., 2000</xref>). The net primary production of macro-algae aquaculture can promote the absorption of atmospheric CO<sub>2</sub>, and the difference in the macro-algae growth rate in different seasons significantly affects the level of the sea&#x2013;air CO<sub>2</sub> exchange flux (<xref ref-type="bibr" rid="B18">Jiang et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B43">Xiao et&#xa0;al., 2021</xref>), which was verified in this study. Compared with the natural seaweed system, a macro-algae aquaculture has more flexibility and scalability in terms of space planning (<xref ref-type="bibr" rid="B43">Xiao et&#xa0;al., 2021</xref>). Macro-algae culture also responded positively to increases in CO<sub>2</sub>, which can increase the productivity of macro-algae culture, result in the absorption of additional CO<sub>2</sub> (<xref ref-type="bibr" rid="B23">Krause-Jensen et&#xa0;al., 2016</xref>), promote a continuous increase in pH, and provide marine life with a refuge for ocean acidification (<xref ref-type="bibr" rid="B14">Hofmann et&#xa0;al., 2011</xref>). Previous studies have shown that the effects of the proliferation of coastal macro-algae on surface seawater <italic>p</italic>CO<sub>2</sub> can last up to 3 months following the end of a water bloom (<xref ref-type="bibr" rid="B10">Gazeau et&#xa0;al., 2005</xref>). However, this was not a pattern that was observed in our study. The <italic>p</italic>CO<sub>2</sub> in the surface seawater of the study area increased significantly after macro-algae was harvested. This might be explained by the fact that the continuous impact of macro-algae on natural water cannot offset the effects of shellfish and other cultured organisms.</p>
<p>Additionally, after the macro-algae culture was initiated, the sea&#x2013;air CO<sub>2</sub> flux in Sanggou Bay was significantly improved. Therefore, whether shellfish culture acts as carbon sink or source is greatly dependent on the participation of the macro-algae aquaculture, which may be another reason why the sources and sinks of the sea&#x2013;air CO<sub>2</sub> flux in the shellfish culture zone change seasonally in this study. Furthermore, we speculate that in bays or waters with weak hydrodynamics, the effect of macro-algae culture could potentially increase the water residence time locally, which may affect the biological process regarding the inorganic carbon cycle. The studies of the effect of macro-algae on the inorganic carbon cycle at the mesocosm scale in the laboratory have been carried out, and the effects of macro-algae on the inorganic carbon cycle in Sanggou Bay are weaker than the effects observed in the laboratory (<xref ref-type="bibr" rid="B19">Jiang et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B12">Han et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B7">Fang et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B13">Han et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B26">Liu et&#xa0;al., 2021</xref>). Characterizing changes in the inorganic carbon system might be difficult if the time that seawater remains in the macro-algae culture zone is relatively short (<xref ref-type="bibr" rid="B28">Li et&#xa0;al., 2021</xref>). Therefore, changes in environmental factors such as ocean currents, as well as multiple effects such as the carbonate balance and biological metabolic processes affect changes in the inorganic carbon cycle of the marine ecosystem (<xref ref-type="bibr" rid="B22">Koweek et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B40">Wahl et&#xa0;al., 2018</xref>).</p>
</sec>
<sec id="s4_3">
<title>Effects of Shellfish&#x2013;Macro-Algae Aquaculture on the Organic Carbon Cycle in Seawater</title>
<p>The concentrations of DOC and POC significantly varied among seasons and regions in the surface seawater of Sanggou Bay. In winter, the biomass of macro-algae farmed in Sanggou Bay was the largest, and the macro-algae released DOC into the water during their growth (<xref ref-type="bibr" rid="B29">Li et&#xa0;al., 2018</xref>). Hence, a higher DOC concentration was observed in the macro-algae culture zone in winter. <xref ref-type="bibr" rid="B20">Jiao et&#xa0;al. (2018)</xref> suggested that microbial carbon fixation is a major part of the missing carbon sink, as it involves the conversion of labile DOC into RDOC and its storage in seawater for a long time. <xref ref-type="bibr" rid="B46">Zhang et&#xa0;al. (2017)</xref> found that the RDOC generated by macro-algae culture is almost equal to the amount of carbon that it uses during its growth. Therefore, macro-algae culture can not only effectively improve the inorganic carbon cycle but can also effectively improve the organic carbon cycle, thereby increasing the strength of the marine carbon sink. The biomass of macro-algae was lowest in Sanggou Bay in summer. However, the DOC concentration in Sanggou Bay was higher in summer than in spring and autumn. This can be explained by the growth of phytoplankton in summer, which results in the release of a large amount of DOC (<xref ref-type="bibr" rid="B32">Mou et&#xa0;al., 2017</xref>). The manure produced by shellfish culture in summer also increases the organic carbon pool and DOC (<xref ref-type="bibr" rid="B33">Ning et&#xa0;al., 2016</xref>). A large amount of organic debris is produced when kelp is harvested in summer. The decaying organic debris and shellfish feces can release a large amount of DOC into the seawater <italic>via</italic> decomposition by microorganisms (<xref ref-type="bibr" rid="B30">Mahmood et&#xa0;al., 2017</xref>). The DOC concentration was lowest in autumn because the macro-algae were recently cultivated, and the growth of phytoplankton was inhibited by macro-algae. Additionally, some of the shellfish are harvested, and a large amount of carbon is removed from the system in autumn (<xref ref-type="bibr" rid="B29">Li et&#xa0;al., 2018</xref>). Therefore, the DOC concentration was lowest in autumn. The DOC concentration in the shellfish culture zone was low in the rest of the seasons except for summer. This suggests that the DOC released by shellfish culture can be quickly reused and thus may not be easily stored in seawater (<xref ref-type="bibr" rid="B46">Zhang et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B29">Li et&#xa0;al., 2018</xref>).</p>
<p>POC is the main form of carbon solidification and migration output in seawater (<xref ref-type="bibr" rid="B16">Hung et&#xa0;al., 2000</xref>). Although it only accounts for approximately 10% of marine organic carbon, the ratio of POC to DOC in marine primary production products is 5:1 (<xref ref-type="bibr" rid="B21">Jiao and Wang, 1994</xref>). POC is closely related to life processes and the primary productivity of organisms; it is thus an important material in the food chain of marine organisms. The source of POC in seawater in Sanggou Bay is mainly live phytoplankton, which is the main food source for shellfish (<xref ref-type="bibr" rid="B42">Xia et&#xa0;al., 2013</xref>). Therefore, the POC concentration in the shellfish culture zone was low. The shellfish culture can effectively remove POC through filter-feeding activity and generate biological deposits such as feces, which has a substantial impact on carbon biogeochemical processes (<xref ref-type="bibr" rid="B19">Jiang et&#xa0;al., 2015</xref>). The POC concentration in the macro-algae culture zone was similarly low because of competition with phytoplankton for nutrients. The POC concentration was higher in the shellfish&#x2013;macro-algae polyculture zone than in the macro-algae culture zone and shellfish culture zone. On the one hand, this indicates that shellfish&#x2013;macro-algae IMTA has little effect on the nutrient structure of the sea area and does not inhibit the reproduction of phytoplankton. On the other hand, this suggests that shellfish&#x2013;macro-algae IMTA can better promote the migration and transformation of particulate carbon.</p>
<p>Overall, DOC and POC play an important role in the marine carbon cycle, and the shellfish and macro-algae in the shellfish&#x2013;macro-algae aquaculture can affect the organic carbon cycle through their physiological activities. Therefore, the cycle of organic carbon requires consideration in future studies of the carbon sink function of marine ecosystems.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<title>Conclusions</title>
<p>Large-scale aquaculture alters the carbon sink function and carbon cycle of marine ecosystems, and aquaculture modes vary in their effects. The macro-algae culture and shellfish culture have substantial effects on the sea&#x2013;air CO<sub>2</sub> flux in Sanggou Bay and inorganic and organic carbon cycles in water. The macro-algae culture can effectively improve various environmental characteristics, promote the absorption of atmospheric CO<sub>2</sub>, and provide calcified organisms with refuges from ocean acidification. Although shellfish culture reduces the absorption capacity of seawater for CO<sub>2</sub>, its efficient filtration capacity can also effectively influence the organic carbon cycle. We believe that the carbon sink function of shellfish culture must be restricted to certain conditions to be realized (e.g., temperature, co-culture of macro-algae). Large-scale shellfish&#x2013;macro-algae IMTA plays an important role in the promotion of carbon cycling.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>Conceptualization, YL and JZ. Methodology, YL. Experience operimental, WW. Sample analysis, WW and JY. Data curation, XW and YZhong. Writing&#x2014;original draft preparation, YL. Writing&#x2014;review and editing, YL. Revision process, HL and YZhang. All authors have read and agreed to the published version of the manuscript.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This research was funded by The National Key R&amp;D Program of China (2020YFA0607603, 2020YFA0607602), Joint Fund of National Natural Science Foundation of China (U1906216), Strategic Priority Research Program of the Chinese Academy of Sciences (XDA23050402), Ministry of agriculture national outstanding agricultural talents and innovative team &#x201c;shallow aquaculture capacity and healthy aquaculture&#x201d; and Central Public-interest Scientific Institution Basal Research Fund, YSFRI, CAFS (NO. 20603022022012).</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
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