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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.1116286</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Terrigenous particles regulate autotrophic and heterotrophic microbial assembly and induce humic-like FDOM accumulation in seawater</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Lianbao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/630133"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Yeping</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2018771"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Li</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Song</surname>
<given-names>Hui</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Institute of Marine Science and Technology, Shandong University</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Southern Marine Science and Engineering Guangdong Laboratory</institution>, <addr-line>Zhuhai</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Jiangsu Institute of Marine Resources Development, Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University</institution>, <addr-line>Lianyungang</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Xiangbin Ran, Ministry of Natural Resources, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Shengwei Hou, Southern University of Science and Technology, China; Qingyun Yan, Sun Yat-sen University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Hui Song, <email xlink:href="mailto:songhui2018@foxmail.com">songhui2018@foxmail.com</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Ocean Observation, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>19</day>
<month>01</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>1116286</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>28</day>
<month>12</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Zhang, Liu, Chen and Song</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Zhang, Liu, Chen and Song</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Climate change can increase riverine discharge, which will promote terrigenous particle transportation and deeply impact microbe-mediated biogeochemical processes in the estuarine ecosystem. However, little is known about the long-term impacts of terrigenous particles on autotrophic and heterotrophic microbial community structures due to <italic>in situ</italic> continuous particle input. To solve this problem, a large-volume indoor incubation experiment was set up for over 40 days to simulate terrigenous particle input scenario. The activity and community structures of keystone groups were largely correlated with biochemical components derived from the terrigenous particles. The ecosystem was maintained by chemoautotrophic nitrifiers before the addition of terrigenous particles. The system was then functionally dominated by heterotrophic microorganisms after the input of terrigenous particles because terrigenous particles created environments that allowed heterotrophs to proliferate better than chemoautotrophs. The input of terrigenous particles increased the relative intensity of humic-like compounds mainly through releasing nutrients and biological labile organic matter to the seawater, which promoted the microbial transformation of organic matter. This study illustrates that terrigenous particles can impact the balance between heterotrophic and chemoautotrophic microbes and play an important role in humic-like compound transformation in seawater. </p>
</abstract>
<kwd-group>
<kwd>terrigenous particulate organic matter</kwd>
<kwd>chemoautotrophy and heterotrophy communities</kwd>
<kwd>microbial transformation</kwd>
<kwd>coastal ecosystem</kwd>
<kwd>carbon sequestration</kwd>
</kwd-group>
<contract-num rid="cn001">2018YFA0605800</contract-num>
<contract-num rid="cn002">2020ZLYS04</contract-num>
<contract-sponsor id="cn001">National Key Research and Development Program of China<named-content content-type="fundref-id">10.13039/501100012166</named-content></contract-sponsor>
<contract-sponsor id="cn002">Key Technology Research and Development Program of Shandong<named-content content-type="fundref-id">10.13039/100014103</named-content></contract-sponsor>
<counts>
<fig-count count="6"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="77"/>
<page-count count="13"/>
<word-count count="6345"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Estuaries connect two of the Earth&#x2019;s most important carbon sinks, terrestrial and marine ecosystems. Annually, 150 Mt of terrigenous particulate organic carbon (POC) is transported to global oceans <italic>via</italic> rivers (<xref ref-type="bibr" rid="B59">Smeaton and Austin, 2022</xref>). Precipitation is predicted to increase under climate change (<xref ref-type="bibr" rid="B41">Meier, 2006</xref>), leading to higher flood risks (<xref ref-type="bibr" rid="B30">Hirabayashi et&#xa0;al., 2013</xref>) and consequently the transportation of more terrigenous particles to the ocean (<xref ref-type="bibr" rid="B6">Bauer et&#xa0;al., 2013</xref>). Before entering the open ocean, terrigenous particulate organic matter (POM) passes through the estuarine filter (<xref ref-type="bibr" rid="B12">Canuel et&#xa0;al., 2012</xref>). It has been suggested that terrigenous organic matter plays a vital role in maintaining coastal carbon cycling (<xref ref-type="bibr" rid="B9">Bianchi et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B6">Bauer et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B70">Ward et&#xa0;al., 2016</xref>). Despite the huge input of terrigenous particles, chemical biomarker and stable isotopic data indicated that there were little terrigenous particles in the ocean (<xref ref-type="bibr" rid="B29">Hedges et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B8">Bianchi, 2011</xref>; <xref ref-type="bibr" rid="B36">Kandasamy and Nath, 2016</xref>). This large discrepancy indicates that a large proportion of terrigenous organic matter is mineralized or photo-degraded in the estuary (<xref ref-type="bibr" rid="B19">Dalzell et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B23">Fichot and Benner, 2014</xref>).</p>
<p>The degradation of terrigenous organic matter will contribute numerous nutrients and organic matter to the oceans, thus strongly impacting marine ecosystems (<xref ref-type="bibr" rid="B33">Jeandel and Oelkers, 2015</xref>). Many studies believe that nutrients limit phytoplankton biomass, and increased discharge of terrigenous nutrients promotes phytoplankton productivity (<xref ref-type="bibr" rid="B49">Rabalais et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B60">Smith, 2006</xref>). However, it has been reported that increased river discharge would suppress phytoplankton biomass production and promote carbon flow to microbial heterotrophy (<xref ref-type="bibr" rid="B72">Wikner and Andersson, 2012</xref>). It can be inferred that heterotrophy will play a more important role after terrigenous organic matter input. However, they ignore chemoautotrophic microorganisms that are universal and important players of biogeochemical processes in the seawater (<xref ref-type="bibr" rid="B46">Pachiadaki et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B54">Sebasti&#xe1;n et&#xa0;al., 2018</xref>). Nitrifiers are the most important chemoautotrophic groups (<xref ref-type="bibr" rid="B43">Middelburg, 2011</xref>; <xref ref-type="bibr" rid="B31">Hutchins and Capone, 2022</xref>), and their activities are largely determined by the concentration of ammonium and nitrite (<xref ref-type="bibr" rid="B37">Kemp and Dodds, 2002</xref>). For example, ammonia-oxidizing archaea (AOA) could account for over 20% of 16S rRNA amplicons in coastal water (<xref ref-type="bibr" rid="B50">Rasmussen and Francis, 2022</xref>). A positive correlation between nitrite-oxidizing bacteria (NOB) and the potential nitrification rates was also found in estuaries (<xref ref-type="bibr" rid="B44">Monteiro et&#xa0;al., 2017</xref>), highlighting the importance of nitrifiers in coastal systems. To evaluate the impacts of terrigenous particles on the balance between heterotrophy and autotrophy, chemoautotrophs should be taken into account.</p>
<p>Studies suggested that an increase in riverine input would increase prokaryotic C production rate and significantly alter phytoplankton communities (<xref ref-type="bibr" rid="B10">Bittar et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B77">Zoppini et&#xa0;al., 2019</xref>). However, the impact of riverine input on marine microbial communities, especially the balance between chemoautotrophic and heterotrophic microbes, remains poorly understood. Moreover, it is not clear how terrigenous particles would impact various biochemical parameters that reflected the ecological functions of the estuarine ecosystem in the long term. This is largely attributed to the complex hydrodynamic processes present in natural environments and continuous terrigenous particle input. Interactions among different microbial groups are complex and easily influenced by the surrounding environments (<xref ref-type="bibr" rid="B17">Constable et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B64">Trevathan-Tackett et&#xa0;al., 2019</xref>). Because microorganisms play a fundamental role in mediating biogeochemical element cycles (<xref ref-type="bibr" rid="B2">Azam and Malfatti, 2007</xref>), it is necessary to learn how marine microbes respond to terrigenous organic matter input, especially under current situations where terrigenous organic matter are increasingly transported into the ocean.</p>
<p>To solve this problem, a large-volume and long-term indoor incubation experiment was set up for over 40 days to simulate the process that terrigenous particles sank to the seawater. A previous study based on this system found that nitrifiers are fundamental in maintaining a starved ecosystem (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>), but it is not clear whether chemoautotrophy remains important after terrigenous particle input. Further studies indicated that terrigenous organic matter influenced marine ecosystems, including increasing prokaryote abundance (<xref ref-type="bibr" rid="B16">Chen et&#xa0;al., 2022</xref>) and promoting organic matter transformation (<xref ref-type="bibr" rid="B73">Xiao et&#xa0;al., 2022</xref>). Recent results based on this system clearly explicated how microbes modified particles in the seawater (<xref ref-type="bibr" rid="B75">Zhang et&#xa0;al., 2022</xref>). The composition and activity of microbial communities are the central issues in microbial ecology (<xref ref-type="bibr" rid="B21">Falkowski et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B53">Schimel and Schaeffer, 2012</xref>; <xref ref-type="bibr" rid="B1">Aronson et&#xa0;al., 2013</xref>). However, the intricacies of how terrigenous particle input influences microbes, especially the balance between autotrophic and heterotrophic microorganisms and associated biogeochemical processes, are unclear. Based on the previous results in this system, this study further improves our understanding of the functional properties and biogeochemical cycles of the marine ecosystem under situations where increasing terrigenous particles will be transported to the seawater.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Experiment setup</title>
<p>To study the responses of marine ecosystems to terrigenous POM input, a long-term and large-volume indoor incubation experiment was set up (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S1</bold>
</xref>). About 100,000 L of seawater was collected from the coast of Halifax to fill the Aquatron tower tank (<uri xlink:href="https://www.dal.ca/dept/aquatron.html">https://www.dal.ca/dept/aquatron.html</uri>). After 80 days, about 20,000 L of river water from the Ingramport River was gently added to the surface of the seawater. Both seawater and river water were filtered with 300-&#x3bc;m pore size bolting cloth before being added to the Aquatron tower tank. The incubation was conducted entirely under dark conditions to avoid disturbances caused by photoautotrophic activities. This study chose the 40-day phases before and after adding freshwater for a total study period of 80 days (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S1</bold>
</xref>). A previous study indicated that there was little change in dissolved inorganic nitrogen (DIN) and microbial community structures during the 40 days before the addition of freshwater, reflecting that the system was relatively steady (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>), thus allowing this phase to be used as background. This study only focused on the dynamics of various ecological parameters in the seawater layer.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Sample collection and biogeochemical analysis</title>
<p>Time-series sample was collected from 1&#xa0;m above the bottom for the following analysis of physicochemical parameters and characteristics of POM. Details on sample collection and measurements were described in previous studies (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B75">Zhang et&#xa0;al., 2022</xref>).</p>
<p>Briefly, about 40-ml water samples were filtered with 0.45-&#x3bc;m pore size polyvinylidene difluoride (PVDF) filters (Millipore). Nutrients <inline-formula>
<mml:math display="inline" id="im1">
<mml:mrow>
<mml:msubsup>
<mml:mtext>NO</mml:mtext>
<mml:mn>2</mml:mn>
<mml:mo>-</mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula>
<mml:math display="inline" id="im2">
<mml:mrow>
<mml:msubsup>
<mml:mtext>NO</mml:mtext>
<mml:mn>3</mml:mn>
<mml:mo>-</mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, and <inline-formula>
<mml:math display="inline" id="im3">
<mml:mrow>
<mml:msubsup>
<mml:mtext>NH</mml:mtext>
<mml:mn>4</mml:mn>
<mml:mo>+</mml:mo>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> were then measured using the Skalar SAN++ autoanalyzer at Dalhousie University. We used the Winkler method to measure the concentration of dissolved oxygen (DO) and the biological oxygen demand (BOD) (<xref ref-type="bibr" rid="B14">Carpenter, 1965</xref>). BOD<sub>5</sub> was the reduction in DO after a 5-day dark incubation period (<xref ref-type="bibr" rid="B26">Grigoryeva et&#xa0;al., 2020</xref>). The chemical oxygen demand (COD) was recorded using the alkaline potassium permanganate method (<xref ref-type="bibr" rid="B38">Liu et&#xa0;al., 2018</xref>). Temperature and salinity were recorded using Multiparameter Sonde (YSI EXO, YSI Inc.).</p>
<p>Seawater samples for fluorescent dissolved organic matter (FDOM) analysis were collected after filtering through precombusted (450&#xb0;C, 6&#xa0;h) GF/F (GF refers to Glass Microfiber and F represents the pore size is 0.7 &#xb5;m) membrane and stored in 40-ml Amber-certified volatile organic analysis (VOA) vials (Thermo Scientific, USA). The sample was analyzed with the Yvon Horiba Aqualog system. Five parallel factor analysis (PARAFAC) components (C1&#x2013;C5) were decomposed and validated. The positions of C1&#x2013;C5 were 319/440 nm, 304/380 nm, &lt;240/523 nm, 388 (250)/487 nm, and 271/329 nm, respectively. Therefore, C1&#x2013;C4 were cataloged as humic-like components and C5 as a protein-like component. Please refer to the original work for more details about sample detection and analysis (<xref ref-type="bibr" rid="B73">Xiao et&#xa0;al., 2022</xref>).</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Biological sample collection and measurements</title>
<p>To collect microbial communities, seawater was successively filtered through 3-, 0.8-, and 0.2-&#x3bc;m pore size polycarbonate membranes (47-mm diameter; Millipore) at a pressure of no more than 0.03 MPa. Membranes were stored in RNase-free tubes, and samples used for active community analysis were filled with RNAlater (RNA stabilization solution, Ambion). All membranes were kept at -20&#xb0;C until nucleic acid extraction. Please refer to the original work for detailed methods (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B75">Zhang et&#xa0;al., 2022</xref>). Nucleotide sequence datasets used in this study are available in the NCBI Sequence Read Archive under the accession number PRJNA751271 (<xref ref-type="bibr" rid="B75">Zhang et&#xa0;al., 2022</xref>).</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Statistical analysis</title>
<p>The variations in bacterial communities at the genus level under the constraint of biogeochemical parameters were analyzed by redundancy analysis (RDA). Variables with variance inflation factor (VIF) &gt;10 were removed, and the remaining factors were used for further analysis. The statistical significance of parameters was estimated using Monte Carlo permutation tests (999 permutations), and only significant explanatory variance (p &lt; 0.05) was shown in the plots.</p>
<p>&#x3b2;-diversity is an important index reflecting the variation in species composition among sites and can be the result of turnover (species replacement between sites) and nestedness (species loss or gain from site to site) (<xref ref-type="bibr" rid="B4">Baselga and Orme, 2012</xref>). To determine how terrigenous particle input impact community diversity, we used the <italic>betapart</italic> package in R to calculate turnover and nestedness components (<xref ref-type="bibr" rid="B4">Baselga and Orme, 2012</xref>). The significance of the difference between the stabilization (before freshwater treatment) and stratification phases (after freshwater treatment) was calculated using T-test.</p>
<p>The changes in the relative abundance of the bacterial groups during incubation were divided into increase (p &lt; 0.05), decrease (p &lt; 0.05), and no significant change (p &gt; 0.05) based on the results of the linear fitness.</p>
<p>The correlation among different bacterial groups was calculated using FastSpar (<xref ref-type="bibr" rid="B71">Watts et&#xa0;al., 2019</xref>) with a bootstrap procedure repeated 1,000 times. Only robust (correlation coefficient &#x2265;0.8 or &#x2264;-0.8) and statistically significant (p &lt; 0.01) correlations were considered. The topological roles of the different groups can be described by within-module connectivity (Zi) and among-module connectivity (Pi) (<xref ref-type="bibr" rid="B27">Guimera and Nunes Amaral, 2005</xref>). Zi and Pi were calculated in R (<xref ref-type="bibr" rid="B13">Cao et&#xa0;al., 2018</xref>). According to the values of Zi and Pi, the nodes in a network were divided into four subcategories: peripheral nodes (Zi &#x2264; 2.5, Pi &#x2264; 0.62), connectors (Zi &#x2264; 2.5, Pi &gt; 0.62), module hubs (Zi &gt; 2.5, Pi &#x2264; 0.62), and network hubs (Zi &gt; 2.5, Pi &gt; 0.62) (<xref ref-type="bibr" rid="B27">Guimera and Nunes Amaral, 2005</xref>; <xref ref-type="bibr" rid="B76">Zhou et&#xa0;al., 2011</xref>).</p>
<p>Ecological functional profiles of bacterial communities were predicted using FAPROTAX (<xref ref-type="bibr" rid="B40">Louca et&#xa0;al., 2016</xref>). Nonmetric multidimensional scaling (NMDS) analysis based on Bray&#x2013;Curtis dissimilarities of predicted functional profiles was used to determine the &#x3b2;-diversity of the different samples.</p>
<p>To link microbial diversity with environmental variables and biogeochemical processes, partial least squares path modeling (PLS-PM) was performed using package <italic>plspm</italic> (version 0.4.9) in R (<xref ref-type="bibr" rid="B25">Gao et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B62">Tian et&#xa0;al., 2019</xref>). Variables used in PLS-PM analysis were divided into eight blocks: &#x3b1;-diversity (Simpson, Shannon, and Chao1), &#x3b2;-diversity (scores of the first two NMDS axes as numeric variables for bacterial community composition), DIN (including ammonium, nitrite, and nitrate), particles (concentration of POC, ratio of POC:PN, and &#x3b4;<sup>13</sup>C of POM), BOD, COD, humic-like components (PARAFAC components C1&#x2013;C4), and protein-like components (PARAFAC component C5). Variables with VIFs &lt;10 were selected to do PLS-PM analysis. Variables with loadings &lt;0.7 based on the results of initial PLS-PM structure equation were removed, and the remaining variables were used to perform the final PLS-PM structure equation (<xref ref-type="bibr" rid="B25">Gao et&#xa0;al., 2019</xref>). R<sup>2</sup> and the goodness of fit (GOF) were used to evaluate the quality of the model.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Bacterial community composition</title>
<p>The bacterial community structure was investigated based on DNA and RNA libraries from three size fractions at the genus level. In both DNA and RNA libraries, the relative abundance of Unclassified Rhodospirillaceae was higher in the &lt;3-&#x3bc;m-size fractions than that in the &gt;3-&#x3bc;m-size fractions, while the reverse was true for <italic>Planctomyces</italic> (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). A peak in relative abundance appeared on day 11 after terrigenous particle input in the &lt;3-&#x3bc;m-size fractions for <italic>Stenotrophomonas</italic>, Unclassified Enterobacteriaceae, and <italic>Enterobacter</italic> when the concentration of POC in the seawater also reached a peak (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). The highest relative abundance of these groups occurred on day 1 in the &gt;3-&#x3bc;m-size fractions due to a faster sinking speed (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). However, this situation only appeared in DNA libraries, and the relative abundances of these groups were very low throughout the experiment in the RNA libraries (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). With the input of terrestrial particles, the relative abundance of <italic>Porticoccus</italic> and Unclassified Moraxellaceae increased, especially in the &lt;3-&#x3bc;m-size fractions based on both DNA and RNA libraries (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). In contrast, the relative abundances of <italic>Schlesneria</italic> and <italic>Zavarzinella</italic> reached their peaks on day 11 in the &gt;3-&#x3bc;m-size fractions in both DNA and RNA libraries (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). It was worth noting that the relative abundance of <italic>Nitrospina</italic> decreased with incubation in the DNA and RNA libraries (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). OM27 clade also showed a significant decreased trend over time in &gt;0.8-&#x3bc;m-size fractions based on the DNA and RNA libraries (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Terrigenous particles caused the dynamics of microbial communities in the seawater.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Bacterial communities at the genus level based on DNA (top panel) and RNA (bottom panel) libraries from the 0.2&#x2013;0.8-&#xb5;m-, 0.8&#x2013;3-&#xb5;m-, and &gt;3-&#xb5;m-size fractions. Groups with relative abundance of not less than 5% in at least one sample were shown in the graph. I, Acidobacteria; II, Alphaproteobacteria; III, Bacteroidetes; IV, Betaproteobacteria; V, Chloroflexi; VI, Deltaproteobacteria; VII, Firmicutes; VIII, Gammaproteobacteria; IX, Nitrospinae; X, Planctomycetes; XI, Verrucomicrobia.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-1116286-g001.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Relationships between bacterial community and biogeochemical parameters</title>
<p>The relationships between bacterial communities and biogeochemical variables were assessed by RDA (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). According to the RDA scores, concentrations of nitrate and POC were significant factors determining the distribution of bacterial communities in all libraries (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>), except for POC in the 0.2&#x2013;0.8-&#x3bc;m-size fraction RNA libraries (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>). Additionally, &#x3b4;<sup>15</sup>N of POM significantly contributed to the variation in the bacterial communities of 0.8&#x2013;3-&#x3bc;m DNA libraries (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>) and 0.2&#x2013;0.8-&#x3bc;m RNA libraries (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>). Concentrations of ammonium and BOD<sub>5</sub> were also significant variables explaining the pattern of the bacterial community structures in the 0.2&#x2013;0.8-&#x3bc;m RNA libraries (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>). Nitrite concentration and &#x3b4;<sup>13</sup>C of POM only impacted the bacterial communities in the &gt;3-&#x3bc;m RNA libraries (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2F</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Ordination plots of the results from the redundancy analysis (RDA). Blue points represented DNA libraries, while green points represented RNA libraries. Communities were from the 0.2&#x2013;0.8-&#x3bc;m <bold>(A, D)</bold>-, 0.8&#x2013;3-&#x3bc;m <bold>(B, E)</bold>-, and &gt;3-&#x3bc;m <bold>(C, F)</bold>-size fractions (p &lt; 0.05). The circle and square represented samples collected before and after the addition of freshwater, respectively.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-1116286-g002.tif"/>
</fig>
<p>Importantly, samples were divided into two groups along the first axis. Samples collected before and after adding freshwater formed distinct clusters (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The bacterial communities collected after adding freshwater were positively correlated with POC but negatively correlated with nitrate that was the production of nitrification, except in the 0.2&#x2013;0.8-&#x3bc;m RNA libraries. In comparison, samples collected before adding freshwater exhibited a completely opposite pattern (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Nestedness and turnover components of &#x3b2;-diversity</title>
<p>&#x3b2;-diversity can be divided into two components, namely, turnover and nestedness. The former reflects species replacement, whereas the latter refers to &#x3b2;-diversity attributable to species loss or gain (<xref ref-type="bibr" rid="B5">Baselga, 2010</xref>). The mean value for pairwise &#x3b2;<sub>turnover</sub> was larger than that for pairwise &#x3b2;<sub>nestedness</sub>, regardless of size fraction or incubation time (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). This indicated that the dissimilarities among samples over time were dominated by <italic>in situ</italic> species replacement, instead of terrigenous particle-attached microbe input. The average &#x3b2;<sub>nestedness</sub> of the stabilization phase increased with size based on both DNA and RNA libraries (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The average &#x3b2;<sub>nestedness</sub> of the stratification phase slightly increased with size based on DNA libraries, whereas the differences among the three size fractions were little based on RNA libraries (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Pairwise turnover and nestedness component of &#x3b2;-diversity across incubation time. I, stabilization phase; II, stratification phase.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-1116286-g003.tif"/>
</fig>
<p>The average &#x3b2;<sub>turnover</sub> of stabilization showed little differences among the three size fractions based on DNA libraries, while it displayed an increasing trend with size based on RNA libraries (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The &#x3b2;<sub>turnover</sub> of stratification was almost the same between 0.2&#x2013;0.8-&#x3bc;m- and 0.8&#x2013;3-&#x3bc;m-size fractions, which was obviously higher than that in the &gt;3-&#x3bc;m-size fractions based on DNA and RNA libraries (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>).</p>
<p>Notably, &#x3b2;<sub>turnover</sub> was higher in the stabilization phase compared to the stratification phase in all size fractions (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). &#x3b2;<sub>nestedness</sub> was higher in the stabilization phase compared to the stratification phase in only &gt;3-&#x3bc;m-size fractions based on RNA libraries, while the &#x3b2;<sub>nestedness</sub> did not show significant differences between the two phases in other libraries (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>).</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>Detection of the topological roles of nodes for the bacterial network</title>
<p>The topological roles of the groups identified in the six networks were shown as a Zi-Pi plot (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). It was observed that most of the groups were peripherals, with most of their links inside their modules. Furthermore, among these peripherals, plenty of nodes (38% for 0.2&#x2013;0.8 &#x3bc;m, 36% for 0.8&#x2013;3 &#x3bc;m, and 28% for &gt;3 &#x3bc;m in DNA libraries; 38% for 0.2&#x2013;0.8 &#x3bc;m, 33% for 0.8&#x2013;3 &#x3bc;m, and 23% for &gt;3 &#x3bc;m in RNA libraries) had no links outside their own modules (Pi = 0) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref>). Most of these nodes were affiliated to groups that did not significantly change with incubation, except in the &gt;3-&#x3bc;m-size fraction DNA libraries, where almost half of the nodes were assigned to groups that increased significantly with time (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref>). It was worth noting that the percentage of these nodes decreased with size fraction in both DNA and RNA libraries (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref>). It might be that microbial communities from large size fractions were easily impacted by terrigenous particle input. Moreover, the percentage of nodes without links outside their own modules was higher in DNA libraries than that in RNA libraries of &gt;0.8-&#x3bc;m-size fractions, while the difference was small in the 0.2&#x2013;0.8-&#x3bc;m-size fraction (<xref ref-type="supplementary-material" rid="SM1">
<bold>Figure S3</bold>
</xref>). The connectors (nodes linking different modules) could be regarded as keystone nodes that play crucial roles in shaping the network structure (<xref ref-type="bibr" rid="B3">Banerjee et&#xa0;al., 2018</xref>). Based on the DNA libraries, 19 (14%), 8 (6%), and 3 (2%) groups were identified as connectors in the 0.2&#x2013;0.8-&#x3bc;m-, 0.8&#x2013;3-&#x3bc;m-, and &gt;3-&#x3bc;m-size fractions, respectively (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Table S1</bold>
</xref>). For the RNA libraries, 5 (4%), 46 (35%), and 1 (1%) group was identified as connectors in the 0.2&#x2013;0.8-&#x3bc;m-, 0.8&#x2013;3-&#x3bc;m-, and &gt;3-&#x3bc;m-size fractions, respectively (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Table S2</bold>
</xref>). Among these keystone nodes, groups that significantly decreased with time were dominant in the &lt;3-&#x3bc;m DNA and &gt;3-&#x3bc;m RNA libraries (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). In comparison, groups that significantly increased or decreased significantly over time were dominant in the &gt;3-&#x3bc;m DNA and &lt;3-&#x3bc;m RNA libraries (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). Furthermore, no network hubs and module hubs were observed in all of the networks (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Zi-Pi plot showing the distribution of groups based on their topological roles. Dots represent bacterial groups with different trends over the incubation period. <bold>(A)</bold> Increasing (p &lt; 0.05); <bold>(B)</bold> decreasing (p &lt; 0.05); <bold>(C)</bold> not significant (p &gt; 0.05). The horizontal dashed line represented a Zi of 2.5, while the vertical dashed line represented a Pi of 0.62.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-1116286-g004.tif"/>
</fig>
</sec>
<sec id="s3_5">
<label>3.5</label>
<title>Changes of ecological functions of bacterial communities</title>
<p>Two-dimensional NMDS ordination was used to illustrate the similarities among predicted bacterial functional profiles. The functional profiles were clearly divided into three groups according to size fraction (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A, B</bold>
</xref>
<bold>)</bold>. Notably, samples collected from the stabilization phase tended to cluster together, while samples from the stratification phase formed another cluster (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A, B</bold>
</xref>
<bold>)</bold>. Moreover, the differences between 0.2&#x2013;0.8-&#x3bc;m- and 0.8&#x2013;3-&#x3bc;m-size fractions were larger than those between 0.8&#x2013;3-&#x3bc;m- and &gt;3-&#x3bc;m-size fractions (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A, B</bold>
</xref>
<bold>)</bold>.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Nonmetric multidimensional scaling (NMDS) of bacterial function composition based on Bray&#x2013;Curtis dissimilarities. <bold>(A)</bold> DNA libraries; <bold>(B)</bold> RNA libraries. Points represent bacterial groups from different size fractions. Red: 0.2&#x2013;0.8 &#x3bc;m; Green: 0.8&#x2013;3 &#x3bc;m; Blue: &gt;3 &#x3bc;m. <bold>(C)</bold> Changes of genes involved in the predicted nitrogen metabolism. Functional profiles were predicted by FAPROTAX. The circle and square represented samples collected before and after the addition of freshwater, respectively.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-1116286-g005.tif"/>
</fig>
<p>A previous study indicated that nitrification played a fundamental role in the driving succession of active communities and biogeochemical elements cycle before terrigenous particles addition (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>); thus, it was necessary to explore functional profiles of bacterial communities associated with nitrogen. Clearly, the metabolism related to nitrogen changed after terrigenous particles sank to the seawater (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). In the stabilization phase, chemoautotrophy (nitrification, ammonia oxidation, and nitrite oxidization) was the dominant process involved in nitrogen metabolism (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). With the input of terrigenous particles, metabolism related to nitrogen shifted from chemoautotrophy to heterotrophy (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). During the stabilization phase, ammonium and nitrite were oxidized to nitrate by nitrifiers, suppling energy and fresh organic carbon to the system. After terrigenous particles sank to the seawater, energy from the degradation of terrigenous organic carbon supported this system and heterotrophy became the dominant process (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>).</p>
</sec>
<sec id="s3_6">
<label>3.6</label>
<title>The direct and indirect effects of terrigenous particles on various ecological parameters</title>
<p>To explore the direct and indirect effects of terrigenous particles on various ecological parameters, we conducted PLS-PM structure equation models. Terrigenous particles greatly affected nutrients <italic>via</italic> direct (path coefficient = 1.07) and indirect (path coefficient = -1.16) ways (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). This indicated that although the total effect of terrigenous particles on nutrients was tiny (path coefficient = -0.08), the dynamics of nutrients were deeply impacted by terrigenous particles. Besides nutrients, humic-like and protein-like components were also deeply impacted by terrigenous particles (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). The humic-like components received more indirect (path coefficient = 0.93) than direct (path coefficient = -0.25) contributions from terrigenous particles, and the total effect was positive (path coefficient = 0.68) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). The opposite situation occurred in the protein-like component, and the total effect of terrigenous particles on this component was negative (path coefficient = -0.52) (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6A, B</bold>
</xref>
<bold>)</bold>. Terrigenous particles had more direct effects on the protein-like component than the humic-like components, whereas the situation was opposite for indirect effects (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). It was interesting to note that terrigenous particles had a positive impact on the &#x3b2;-diversity but a negative impact on the &#x3b1;-diversity of bacterial communities (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6A, B</bold>
</xref>
<bold>)</bold>. The positive direct effect of terrigenous particles on BOD (path coefficient = 0.45) was greater than their negative indirect effect (path coefficient = -0.31), leading to an overall positive impact of terrigenous particles on BOD (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6A, B</bold>
</xref>
<bold>)</bold>.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Partial least squares path models showing the effects of terrigenous particles on other variables. <bold>(A)</bold> Effects among different factors monitored in this system based on partial least squares path analysis. GOF, goodness of fit. The blue arrows represent the negative effect, while the red arrows indicate the positive effect. <bold>(B)</bold> Standardized effects of particles on other factors. <bold>(C)</bold> Standardized effects of factors on the humic-like components.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-1116286-g006.tif"/>
</fig>
<p>The relative intensity of the humic-like components was well explained by our block variables (R<sup>2</sup> = 0.90) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>). Among these variables, the &#x3b2;-diversity of bacterial communities was the most important factor affecting the humic-like components (path coefficient = 1.22) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). The terrigenous particles were also a key factor influencing the humic-like components (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). Although terrigenous particles could indirectly increase the relative intensity of this component, they simultaneously reduced the relative intensity of the humic-like components through direct ways (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). The &#x3b1;-diversity of bacterial communities also exhibited an important contribution to the humic-like components through mainly indirect effects (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). Overall, the &#x3b2;-diversity of bacterial communities, terrigenous particles, and BOD had positive impacts while the &#x3b1;-diversity of bacterial communities had negative impacts on the humic-like components (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6A, C</bold>
</xref>
<bold>)</bold>.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>Impacts of terrigenous particulates on the bacterial diversity and community structures in seawater</title>
<p>Microorganisms are the foundation of ecosystems and regulate global biogeochemical cycles (<xref ref-type="bibr" rid="B21">Falkowski et&#xa0;al., 2008</xref>). Not only are marine microbes largely determined by terrigenous organic matter input (<xref ref-type="bibr" rid="B10">Bittar et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B77">Zoppini et&#xa0;al., 2019</xref>), they also impact the cycle of carbon and other elements  (<xref ref-type="bibr" rid="B21">Falkowski et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B53">Schimel and Schaeffer, 2012</xref>; <xref ref-type="bibr" rid="B1">Aronson et&#xa0;al., 2013</xref>). However, previous studies only divided the microbial groups into autotrophic and heterotrophic subgroups, without finer taxonomic information about microbial communities (<xref ref-type="bibr" rid="B72">Wikner and Andersson, 2012</xref>). The influences of terrigenous input on microbial communities were also uncertain. This study clearly illustrated how terrigenous particles changed bacterial communities at the genus level (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Previous studies found that the genus <italic>Stenotrophomonas</italic> was particularly closely associated with terrestrial plants (<xref ref-type="bibr" rid="B52">Ryan et&#xa0;al., 2009</xref>). The changes in relative abundance of <italic>Stenotrophomonas</italic>, Unclassified Enterobacteriaceae, and <italic>Enterobacter</italic> supported that terrigenous sinking particles carried bacteria from the river to the seawater, but they did not remain active in the seawater (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>).</p>
<p>The value of turnover was higher than that of nestedness in all size fractions (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). This phenomenon was consistent with most studies that the dominant component has been turnover in various ecosystems (<xref ref-type="bibr" rid="B61">Soininen et&#xa0;al., 2018</xref>). High &#x3b2;<sub>turnover</sub> suggested that a difference in richness played a smaller role in generating &#x3b2;-diversity patterns, while compositional dissimilarities of communities between samples were the dominant factors influencing &#x3b2;-diversity (<xref ref-type="bibr" rid="B61">Soininen et&#xa0;al., 2018</xref>). Terrigenous particles can change the &#x3b2;-diversity in seawater through two ways: 1) river particle-attached bacteria can be transported to the seawater by sinking terrigenous particles; 2) terrigenous particles are an important organic matter source, and the input of organic matter will change the bacterial community (<xref ref-type="bibr" rid="B58">Sipler et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B24">Figueroa et&#xa0;al., 2021</xref>). The input of terrigenous POM significantly decreased the average &#x3b2;<sub>turnover</sub> (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>) without significant impacts on the average &#x3b2;<sub>nestedness</sub> (except &gt;3 &#x3bc;m, RNA libraries), implying that the input of terrigenous particles changed the relative abundance of the original bacterial groups. This was the dominant way for terrigenous particles to impact the bacterial community structure in the seawater. Although terrigenous particles can carry river bacteria to the seawater, this has minor effects on marine bacterial communities.</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Impacts of terrigenous particles on the balance between chemoautotrophic and heterotrophic microbes</title>
<p>The RDA showed that POC was a significant environment factor that structured bacterial communities after the addition of freshwater, while nitrate holds the main role in explaining bacterial community variations before adding freshwater (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). A previous study indicated that nitrification performed by nitrifiers played a fundamental role in maintaining this starved ecosystem (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>), and there was no doubt that nitrate was a significant factor shaping bacterial communities before adding freshwater. Functional profiles also supported that nitrification was the dominant metabolism before adding freshwater (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). However, the metabolism related to nitrogen shifted from chemoautotrophy to heterotrophy with the input of terrigenous POM. Terrigenous particles carried nutrients to the seawater, which might promote phytoplankton productivity (<xref ref-type="bibr" rid="B60">Smith, 2006</xref>). Further research showed that riverine discharge had a negative effect on phytoplankton production and a positive effect on heterotrophic production (<xref ref-type="bibr" rid="B72">Wikner and Andersson, 2012</xref>). It is hard to study the impacts of terrigenous particles on chemoautotrophic microorganisms in the field because of the disturbance caused by light and continuous terrigenous particle input. This study found that although terrigenous particles transported DIN to the seawater that might promote the activity of chemoautotrophic microorganisms, this process was not as important as the enhanced activity of heterotrophic microorganisms caused by terrigenous organic matter input. Because the concentration of DIN was lower in freshwater than that in seawater, terrigenous particles could transport little nutrient to the seawater. Moreover, heterotrophic microorganisms can assimilate ammonium (e.g., SAR86) (<xref ref-type="bibr" rid="B42">Middelburg and Nieuwenhuize, 2000</xref>; <xref ref-type="bibr" rid="B20">Dupont et&#xa0;al., 2012</xref>), and previous studies proved that nitrifiers were less competitive for ammonium (<xref ref-type="bibr" rid="B67">Verhagen et&#xa0;al., 1992</xref>; <xref ref-type="bibr" rid="B66">Van Niel et&#xa0;al., 1993</xref>). Thus, terrigenous particles obviously promoted the activity of heterotrophic but not autotrophic bacteria.</p>
<p>Sixty-five groups were identified as connectors of the network (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>) and could be regarded as keystone nodes (<xref ref-type="bibr" rid="B3">Banerjee et&#xa0;al., 2018</xref>). Although some of the keystone groups were rare, previous studies documented that rare microorganisms were important for many biogeochemical processes (<xref ref-type="bibr" rid="B3">Banerjee et&#xa0;al., 2018</xref>). Some keystone nodes were shared between DNA and RNA libraries and accounted for 60% and 20% of all keystone nodes in these two libraries, respectively (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). This implied that connectors in the RNA-based network made much tighter interactions among modules than those in the DNA-based network, which confirmed that the network structures were different between these two libraries.</p>
<p>Nearly 30% of network nodes were affiliated to groups that did not significantly change with incubation (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). Previous opinions believed that keystone taxa were consistently present regardless of changes in environmental conditions (<xref ref-type="bibr" rid="B57">Shade and Handelsman, 2012</xref>). More than 40% of network nodes were involved in groups that decreased significantly over time, and these nodes were dominated by proteobacteria, many of which were nitrifiers. A previous study showed that nitrifiers played a fundamental role in maintaining this starved ecosystem (<xref ref-type="bibr" rid="B74">Zhang et&#xa0;al., 2021</xref>). This study also showed that nitrifiers (<italic>Nitrosomonas</italic>, <italic>Nitrosospira</italic>, and <italic>Nitrospira</italic>) were involved in keystone groups (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). However, their importance to the ecosystem was weakened after terrigenous particles sank to the seawater, apparent in their significant decrease with time (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Nearly 30% of the keystone groups increased significantly with incubation. These keystone groups were mainly affiliated with Bacteroidetes, Planctomycetes, and Proteobacteria (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). Bacteroidetes are generally specialized in degrading high-molecular weight compounds and prefer to attach to particles (<xref ref-type="bibr" rid="B22">Fern&#xe1;ndez-Gomez et&#xa0;al., 2013</xref>). Planctomycetes are also important in particle degradation (<xref ref-type="bibr" rid="B45">Orsi et&#xa0;al., 2016</xref>). These groups were pioneers in particle degradation and supply substrates to others, thus they played a keystone role in maintaining the bacterial communities. This indicated that the metabolisms involved in the particle degradation were key processes in this system. Terrigenous sinking particles carried organic carbon to the seawater, and there was no doubt that POC was the significant factor shaping bacterial community structures during the stratification phase (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<p>It was worth mentioning that the abundant group SAR86 (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>), a clade of proteobacteria, was a connector in the networks (<xref ref-type="supplementary-material" rid="SM1">
<bold>Tables S1</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>S2</bold>
</xref>). It significantly decreased in DNA libraries (<xref ref-type="supplementary-material" rid="SM1">
<bold>Table S1</bold>
</xref>) but did not change significantly in RNA libraries (<xref ref-type="supplementary-material" rid="SM1">
<bold>Table S2</bold>
</xref>). Studies about this clade indicated that it could degrade lipids and carbohydrates, but the genomes of SAR86 lack nitrate reductase and nitrite reductase (<xref ref-type="bibr" rid="B20">Dupont et&#xa0;al., 2012</xref>). The stable relative abundance of this clade in the RNA libraries implied that terrigenous particles impacted the bacterial activity <italic>via</italic> synergistic interactions among nutrients and organic matter.</p>
<p>Terrigenous particles can alter keystone groups and impact whole bacterial communities. A previous study showed that terrigenous input increased the production of heterotrophic instead of photosynthetic microorganisms (<xref ref-type="bibr" rid="B72">Wikner and Andersson, 2012</xref>). This study further supported that terrigenous particles weakened the importance of chemoautotrophic microorganisms in marine ecosystems, and increased riverine discharge would lead to domination of the food web by heterotrophic microorganisms.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Impacts of terrigenous particles on various ecological parameters in seawater</title>
<p>Changes in ecological function induced by terrigenous particles will impact diverse ecological parameters in seawater. Bacteria often display &#x201c;feast and famine&#x201d; strategies (<xref ref-type="bibr" rid="B47">Pedler et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B55">Sebasti&#xe1;n et&#xa0;al., 2019</xref>), where the input of sinking particles can promote special species to grow rapidly, thus reducing the &#x3b1;-diversity of bacterial communities (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6A, B</bold>
</xref>
<bold>)</bold>. &#x3b2;-diversity represents the change in species diversity between communities. The results of RDA indicated that terrigenous particles were a significant factor shaping bacterial communities during the stratification phase (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). On one hand, terrigenous particles carried riverine bacterial communities to the seawater, where most of them disappeared with incubation, causing divergences and increasing the &#x3b2;-diversity of bacterial communities. On the other hand, as discussed above, opportunistic groups grew fast under the stimulation of terrigenous particles and dominated the bacterial communities, reducing the &#x3b2;-diversity of bacterial communities.</p>
<p>In addition to the bacterial community, terrigenous particles can strongly impact many physicochemical parameters. Terrigenous particles carried and released biologically available organic matter when they entered oceans (<xref ref-type="bibr" rid="B11">Butman et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B8">Bianchi, 2011</xref>), thus terrigenous particles directly and positively impacted BOD (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). Moreover, the priming effect caused by the addition of active terrigenous POM promoted microbes to mineralize <italic>in situ</italic> organic matter and cause the depletion of organic matter (<xref ref-type="bibr" rid="B65">Turnewitsch et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B8">Bianchi, 2011</xref>), illustrated by the indirect and negative impacts of terrigenous particles on BOD and COD (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). Furthermore, previous studies showed that sinking particles could be the core for dissolved organic matter (DOM) to attach (<xref ref-type="bibr" rid="B32">Hwang and Druffel, 2003</xref>; <xref ref-type="bibr" rid="B51">Roland et&#xa0;al., 2008</xref>). This scavenging process transported organic matter from the water column to the sediments, causing a decrease in COD. Therefore, terrigenous particles had a direct and negative impact on COD (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>).</p>
<p>Terrigenous POM was composed of numerous components (<xref ref-type="bibr" rid="B63">Tremblay et&#xa0;al., 2011</xref>). The input of terrigenous particles directly diluted the relative intensity of humic- and protein-like components. However, a previous study based on this system indicated that terrigenous particles promoted the growth of prokaryotic microorganisms (<xref ref-type="bibr" rid="B16">Chen et&#xa0;al., 2022</xref>), which likely produced more protein-like compounds. Therefore, terrigenous particles also indirectly and positively impacted the protein-like component (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). Interactions among different components in FDOM can potentially take place. It was found that although the fluorescence of protein-like components was largely quenched by the humic-like components, the fluorescence of humic-like components was not influenced by the protein-like components (<xref ref-type="bibr" rid="B69">Wang et&#xa0;al., 2015</xref>). Thus, the impacts of terrigenous particles on protein-like components might be stronger.</p>
<p>Previous studies showed that terrigenous particles could carry nutrients to the ocean (<xref ref-type="bibr" rid="B56">Seitzinger et&#xa0;al., 2005</xref>), so there was no doubt that nutrients were directly and positively contributed by terrigenous particles (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). Enhanced nutrients (ammonium and nitrate) could increase organic matter transformation (<xref ref-type="bibr" rid="B35">Jiao et&#xa0;al., 2010</xref>), causing the depletion of organic matter in the system. Heterotrophic bacteria with nitrate reductase genes can use dissolved nutrients (<xref ref-type="bibr" rid="B34">Jiang and Jiao, 2016</xref>), reducing the concentration of DIN. The predicted function profiles also showed that nitrate reduction played a more important role after terrigenous particles sank to the seawater (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). The utilization of terrigenous organic matter stimulated nitrate reduction, thus terrigenous particles indirectly and negatively affected the nutrients (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>).</p>
<p>Marine DOM is approximately equivalent to the stock of carbon resident in atmospheric CO<sub>2</sub> (<xref ref-type="bibr" rid="B28">Hansell et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B48">Qu&#xe9;r&#xe9; et&#xa0;al., 2018</xref>), and therefore even a tiny disturbance to it can have large implications for the global carbon cycle (<xref ref-type="bibr" rid="B39">L&#xf8;nborg et&#xa0;al., 2020</xref>). Thus, we paid special attention to the impacts of terrigenous particles on DOM, especially the humic-like component that was an important part of recalcitrant DOM (<xref ref-type="bibr" rid="B18">Cory and Kaplan, 2012</xref>; <xref ref-type="bibr" rid="B15">Catal&#xe1; et&#xa0;al., 2015</xref>). Previous studies supported that high riverine discharge corresponded with changes in DOM quality, including an elevated proportion of humic-like FDOM (<xref ref-type="bibr" rid="B68">Walker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B10">Bittar et&#xa0;al., 2016</xref>). A previous study based on this system showed that the production rate of the humic-like components increased after freshwater addition (<xref ref-type="bibr" rid="B73">Xiao et&#xa0;al., 2022</xref>). However, they did not find microbial evidence to explain this observation. This was illustrated by our results that indirect effects were more important than direct effects (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6B, C</bold>
</xref>
<bold>)</bold>. As discussed above, terrigenous particles carried nutrients and organic matter to the seawater, which then promoted the transformation of organic matter, ultimately causing the accumulation of humic-like FDOM components. Terrigenous particles promoted the activity of heterotrophic microorganisms and associated transformation of organic matter, thus causing the accumulation of humic-like components.</p>
</sec>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusions</title>
<p>Although terrigenous particles can carry riverine microorganisms to the seawater, this study finds that the terrigenous matter derived from the particles was a more important factor than microbes in driving bacterial community structures in the seawater. Because the activity of keystone groups was largely correlated with terrigenous particles, it is likely that terrigenous particles determined the bacterial communities through shaping keystone groups. Terrigenous particles deeply impacted the balance between chemoautotrophic and heterotrophic groups and weakened the importance of chemoautotrophy in seawater. Coupled with results from previous studies, it can be inferred that increased riverine discharge would lead to an ecosystem dominated by heterotrophic microorganisms (<xref ref-type="bibr" rid="B7">Berglund et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B72">Wikner and Andersson, 2012</xref>). Humic-like compounds are thought to be important parts of recalcitrant organic carbon and play an essential role in the marine carbon cycle. Although terrigenous particles did carry humic-like compounds to the seawater, stimulated transformation of <italic>in situ</italic> organic matter in seawater caused by terrigenous nutrients and organic matter contributed more humic-like compounds. This will increase carbon sequestration in the seawater because these compounds are generally recalcitrant to microbial degradation. Our study implied that terrigenous particles transported nutrients and organic matter to the seawater and triggered a series of ecological dynamics. Because the river basin in this study is relatively undisturbed, future studies can consider ecosystems strongly impacted by human activities for a more general conclusion.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: <uri xlink:href="https://www.ncbi.nlm.nih.gov/">https://www.ncbi.nlm.nih.gov/</uri>, PRJNA751271.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>HS designed and coordinated the study. LZ, and YL performed the experiments. LZ and YL analyzed the data and wrote the manuscript with contributions from all co-authors. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was funded by Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) (SML2020SP004), the Key Research and Development Program of Shandong Province (2020ZLYS04) and National Key Research and Development Program of China (2018YFA0605800).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We sincerely thank TingYat Lee for his assistance in editing original manuscript. We also thank Nianzhi Jiao, Jihua Liu and Xilin Xiao for their support during this experiment.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2022.1116286/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2022.1116286/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
</sec>
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