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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2021.791484</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Precautionary Principle or Evidence-Based Conservation? Assessing the Information Content of Threat Data for the Yangtze Finless Porpoise</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Mogensen</surname> <given-names>Lisa M. W.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Mei</surname> <given-names>Zhigang</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/801302/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Hao</surname> <given-names>Yujiang</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/805555/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Harrison</surname> <given-names>Xavier A.</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/108820/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname> <given-names>Ding</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Turvey</surname> <given-names>Samuel T.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1185079/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Institute of Zoology, Zoological Society of London</institution>, <addr-line>London</addr-line>, <country>United Kingdom</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Genetics, Evolution and Environment, University College London</institution>, <addr-line>London</addr-line>, <country>United Kingdom</country></aff>
<aff id="aff3"><sup>3</sup><institution>Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences</institution>, <addr-line>Wuhan</addr-line>, <country>China</country></aff>
<aff id="aff4"><sup>4</sup><institution>Biosciences, College of Life and Environmental Sciences, University of Exeter</institution>, <addr-line>Exeter</addr-line>, <country>United Kingdom</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Jeff Moore, Southwest Fisheries Science Center (NOAA), United States</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Xuming Zhou, Institute of Zoology, Chinese Academy of Sciences (CAS), China; Tom Jefferson, Clymene Enterprises, United States</p></fn>
<corresp id="c001">&#x002A;Correspondence: Samuel T. Turvey, <email>samuel.turvey@ioz.ac.uk</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Marine Megafauna, a section of the journal Frontiers in Marine Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>04</day>
<month>01</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>8</volume>
<elocation-id>791484</elocation-id>
<history>
<date date-type="received">
<day>08</day>
<month>10</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>12</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2022 Mogensen, Mei, Hao, Harrison, Wang and Turvey.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Mogensen, Mei, Hao, Harrison, Wang and Turvey</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Conservation management requires evidence, but robust data on key parameters such as threats are often unavailable. Conservation-relevant insights might be available within datasets collected for other reasons, making it important to determine the information content of available data for threatened species and identify remaining data-gaps before investing time and resources in novel data collection. The Yangtze finless porpoise (<italic>Neophocaena asiaeorientalis asiaeorientalis</italic>) has declined severely across the middle-lower Yangtze, but multiple threats exist in this system and the relative impact of different anthropogenic activities is unclear, preventing identification of appropriate mitigation strategies. Several datasets containing information on porpoises or potential threats are available from past boat-based and fishing community surveys, which might provide novel insights into causes of porpoise mortality and decline. We employed multiple analytical approaches to investigate spatial relationships between live and dead porpoises and different threats, reproductive trends over time, and sustainable offtake levels, to assess whether evidence-based conservation is feasible under current data availability. Our combined analyses provide new evidence that mortality is spatially associated with increased cargo traffic; observed mortality levels (probably a substantial underestimate of true levels) are unsustainable; and population recruitment is decreasing, although multiple factors could be responsible (pollutants, declining fish stocks, anthropogenic noise, reduced genetic diversity). Available data show little correlation between patterns of mortality and fishing activity even when analyzed across multiple spatial scales; however, interview data can be affected by multiple biases that potentially complicate attempts to reconstruct levels of bycatch, and new data are required to understand dynamics and sustainability of porpoise-fisheries interactions. This critical assessment of existing data thus suggests that <italic>in situ</italic> porpoise conservation management must target multiple co-occurring threats. Even limited available datasets can provide new insights for understanding declines, and we demonstrate the importance of an integrative approach for investigating complex conservation problems and maximizing evidence in conservation planning for poorly known taxa.</p>
</abstract>
<kwd-group>
<kwd>cetacean</kwd>
<kwd>conservation effectiveness</kwd>
<kwd>evidence-based conservation</kwd>
<kwd>interview survey</kwd>
<kwd>precautionary principle</kwd>
<kwd>sustainable offtake</kwd>
<kwd>uncertainty</kwd>
</kwd-group>
<contract-sponsor id="cn001">Natural Environment Research Council<named-content content-type="fundref-id">10.13039/501100000270</named-content></contract-sponsor>
<counts>
<fig-count count="2"/>
<table-count count="4"/>
<equation-count count="4"/>
<ref-count count="87"/>
<page-count count="11"/>
<word-count count="9423"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>Conservation practitioners recognize the need for evidence-based conservation, where robust data are used to understand the dynamics of decline and guide best-practice management (<xref ref-type="bibr" rid="B53">Sutherland et al., 2004</xref>; <xref ref-type="bibr" rid="B1">Bower et al., 2018</xref>). However, data for many threatened species are limited in quantity and/or quality, hindering informed decision-making (<xref ref-type="bibr" rid="B3">Catullo et al., 2008</xref>; <xref ref-type="bibr" rid="B30">McDonald-Madden et al., 2008</xref>; <xref ref-type="bibr" rid="B25">Lindenmayer et al., 2013</xref>). In such cases, precautionary conservation is often applied (<xref ref-type="bibr" rid="B2">Carr and Raimondi, 1999</xref>; <xref ref-type="bibr" rid="B39">Pan and Huntington, 2015</xref>; <xref ref-type="bibr" rid="B48">Sampaio et al., 2015</xref>). This approach deals with uncertainty using defensive intervention, and typically advocates action even in data-poor contexts (<xref ref-type="bibr" rid="B6">Cooney, 2004</xref>). However, precautionary conservation can increase the risk of suboptimal outcomes and inefficient use of time and resources, as interventions are more poorly informed and might not target key problems effectively (<xref ref-type="bibr" rid="B64">VanderWerf et al., 2006</xref>). Further research can overcome data limitation, but requires investment in resources that could be allocated to more practical activities, can yield diminishing investment returns or risk replicating collection of existing data (<xref ref-type="bibr" rid="B12">Grantham et al., 2008</xref>), and can generate delays that reduce the guarantee of improved conservation prospects (<xref ref-type="bibr" rid="B19">Jaramillo-Legorreta et al., 2007</xref>). Alternatively, conservation-relevant insights might be provided through analysis of existing datasets originally collected for other reasons (<xref ref-type="bibr" rid="B30">McDonald-Madden et al., 2008</xref>; <xref ref-type="bibr" rid="B80">Zhang and Vincent, 2017</xref>). It is thus important to determine the information content of available data on threatened species before investing in novel data collection. This may involve multiple analyses of limited data to extract maximally useful conservation baselines and identify remaining data-gaps (<xref ref-type="bibr" rid="B27">MacMillan and Marshall, 2006</xref>; <xref ref-type="bibr" rid="B56">Thieme et al., 2007</xref>; <xref ref-type="bibr" rid="B46">Rodrigues, 2011</xref>).</p>
<p>The Yangtze finless porpoise (<italic>Neophocaena asiaeorientalis asiaeorientalis</italic>) is a freshwater cetacean endemic to the middle-lower Yangtze drainage in eastern China, occurring in the 1,700 km river mainstem between Yichang-Shanghai and in the appended Dongting and Poyang lakes. It is usually considered a freshwater subspecies of narrow-ridged finless porpoise, but has recently been proposed as a recently diverged distinct species on the basis of its genetic adaptation to freshwater conditions and complete genetic isolation from marine finless porpoise populations (<xref ref-type="bibr" rid="B87">Zhou et al., 2018</xref>). The Yangtze River experienced the extinction of the Yangtze River dolphin or baiji (<italic>Lipotes vexillifer</italic>) in the early 2000s (<xref ref-type="bibr" rid="B62">Turvey et al., 2007</xref>), and the porpoise population has also declined severely, falling in the mainstem from &#x223C;2,700 in the 1990s (<xref ref-type="bibr" rid="B79">Zhang et al., 1993</xref>) to &#x223C;500 in 2012 (<xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>). It is now one of the few cetaceans listed as Critically Endangered by <xref ref-type="bibr" rid="B18">IUCN (2021)</xref>. The middle-lower Yangtze drainage is heavily industrialized, supports extremely large human populations, and is impacted by numerous anthropogenic pressures including intensive legal and illegal fishing activities (free-floating nets, hook-based gears such as rolling-hook long-lines, fixed nets, and electrofishing), high vessel traffic, pollution, resource depletion, and habitat loss/degradation. These activities are all proposed as potential drivers of porpoise decline through elevated direct mortality, reduced survivorship, or reduced carrying capacity (<xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B67">Wang, 2009</xref>; <xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>; <xref ref-type="bibr" rid="B15">Huang et al., 2017</xref>).</p>
<p>The relative impact of different potential porpoise threats has been the subject of limited research. Previous studies consist largely of investigating local-scale porpoise distributions in relation to available resources (<xref ref-type="bibr" rid="B21">Kimura et al., 2012</xref>; <xref ref-type="bibr" rid="B71">Wang et al., 2014</xref>), and opportunistically-observed porpoise deaths associated with specific threats including fisheries bycatch, propeller collisions, and pollutants (<xref ref-type="bibr" rid="B86">Zhou and Wang, 1994</xref>; <xref ref-type="bibr" rid="B68">Wang et al., 2000</xref>, <xref ref-type="bibr" rid="B70">2015</xref>; <xref ref-type="bibr" rid="B10">Dong et al., 2006</xref>; <xref ref-type="bibr" rid="B76">Yang et al., 2008</xref>; <xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>; <xref ref-type="bibr" rid="B75">Xiong et al., 2019</xref>). Two population viability analyses have been conducted to model future decline (<xref ref-type="bibr" rid="B83">Zhang and Wang, 1999</xref>; <xref ref-type="bibr" rid="B15">Huang et al., 2017</xref>); however, neither attempted to quantify sustainable levels of offtake (the number of individuals removed from the environment through hunting, harvesting, or other killing by humans; cf. <xref ref-type="bibr" rid="B17">Ingram et al., 2015</xref>), or incorporated mortality data associated with different threats. The only population-level study into drivers of decline used a mortality dataset derived from interviews with artisanal fishers (<xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>). This study suggested that propeller-related mortality has increased over time and might be driving decline, whereas bycatch mortality has decreased over time and might therefore merely be tracking decline. However, the relative significance of only these two threats could be assessed, and most deaths could not be attributed to known causes.</p>
<p>Rapid, effective action is needed to prevent Yangtze finless porpoise extinction. However, mitigation of different threats requires different approaches, but in the absence of robust data on primary driver(s) of decline, it is difficult to identify priority management targets. Indeed, in ecosystems where cetaceans face multiple threats, each threat might have reduced individual risk, resulting in reduced power to identify drivers of decline (<xref ref-type="bibr" rid="B57">Thompson et al., 2000</xref>). A precautionary approach has been generally recommended for cetacean conservation, especially for threatened species lacking robust data on causes of decline (<xref ref-type="bibr" rid="B57">Thompson et al., 2000</xref>), and precautionary measures have been initiated for Yangtze finless porpoise conservation. Porpoises are awarded national-level protection under China&#x2019;s 1989 Wildlife Protection Act, several <italic>in situ</italic> and <italic>ex situ</italic> reserves have been established (with regulation of boat traffic within some reserves), and seasonal fishing bans have been implemented across the middle-lower Yangtze since 2003 to mitigate against bycatch and fish stock depletion (<xref ref-type="bibr" rid="B67">Wang, 2009</xref>), based on the assumption that fisheries impacts are an important driver of decline (<xref ref-type="bibr" rid="B86">Zhou and Wang, 1994</xref>; <xref ref-type="bibr" rid="B69">Wang et al., 1998</xref>; <xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>). However, existing <italic>in situ</italic> management potentially risks further declines if other factors are primarily responsible for regulating porpoise population dynamics (cf. <xref ref-type="bibr" rid="B47">Rojas-Bracho et al., 2019</xref>).</p>
<p>Several datasets containing information on porpoises and/or potential threats are available for the Yangtze system, including from boat-based surveys in 2006 and 2012 that followed identical survey protocols across the same area and same time of year (November&#x2013;December) (<xref ref-type="bibr" rid="B62">Turvey et al., 2007</xref>; <xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>), and interview surveys in artisanal fishing communities in 2008 and 2011&#x2013;2012 (<xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>, <xref ref-type="bibr" rid="B60">2015a</xref>). These datasets date from a period when the porpoise population was experiencing a rapid decline (<xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>), and so might be able to provide important insights into the drivers of this decline. We investigated the information content of this existing evidence-base using multiple analytical approaches, to determine whether available datasets can strengthen our baseline for understanding primary causes of porpoise mortality, investigate relative impacts of different possible threats, identify remaining data-gaps, and assess whether evidence-based porpoise conservation is feasible under current data availability or whether a more precautionary approach is justified. Our study reveals novel insights into the dynamics and probable drivers of porpoise population depletion, and illustrates an approach to maximize evidence in conservation planning and prioritization for highly threatened taxa.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Spatial Mortality and Threat Patterns</title>
<sec id="S2.SS1.SSS1">
<title>100 km-Section Analysis</title>
<p>Spatial data on counts of live porpoise sightings, cargo vessels and fishing vessels were collected along the Yangtze mainstem (Yichang-Shanghai) during the 2006 boat-based survey (<xref ref-type="bibr" rid="B62">Turvey et al., 2007</xref>; <xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="fig" rid="F1">Figure 1</xref>). Spatial data on reported porpoise deaths and locally used fishing gear types were collected across the same area during the 2008 interview survey of 599 respondents in 27 fishing communities (see <xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref> for survey methods and questionnaire design). Associated information reported by respondents on dates and locations of specific dead porpoise observations indicates that these all represented independent mortality events, rather than multiple reports of the same animals (<xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>). To investigate relationships between reported mortality levels and spatial distributions of different threats on a Yangtze-wide scale, data from both surveys were grouped into 17,100 km river sections, to control for spatially uneven distribution of fishing communities and match study design in <xref ref-type="bibr" rid="B63">Turvey et al. (2013)</xref> (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table 1</xref>). The furthest downstream section was excluded from analysis because respondents here fished partly at sea, so reports likely also refer to marine narrow-ridged finless porpoises (<italic>Neophocaena asiaeorientalis sunameri</italic>) and marine-type gears.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p><bold>(Top)</bold> Middle-lower Yangtze drainage (Yichang-Shanghai), showing 2008 fisher survey localities and number of interviews. <bold>(Bottom)</bold> 2011&#x2013;2012 fisher survey localities and number of interviews.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-791484-g001.tif"/>
</fig>
<p>The relationship between mortality levels and threats in the remaining 16,100 km sections was investigated using a binomial generalized linear model (GLM) framework in R v3.4.3 (<xref ref-type="bibr" rid="B42">R Development Core Team, 2017</xref>). Proportion of respondents who had seen a dead porpoise during the previous 12 months was used as the response variable; data on numbers of dead porpoise sightings per respondent were too imprecise to analyze, as most responses were qualitative (e.g., &#x201C;a few&#x201D;) rather than quantitative. Predictor variables included counts of cargo vessels, fishing vessels and live porpoises, and proportions of respondents who reported using different functional fishing gear types (free-floating nets, fixed nets, hook-type gears), and who thought electrofishing was locally a problem. Vessel counts had much larger values and ranges than other variables, so were individually rescaled to a mean of 0 and standard deviation of 1. An indirect electrofishing metric was necessary because this activity is illegal and heavily penalized, so direct reporting data are prone to bias by omission.</p>
<p>Data were over-dispersed and so were fitted in a beta-binomial framework, which takes sample size information into account rather than simply using raw proportion data (<xref ref-type="bibr" rid="B14">Harrison, 2015</xref>). Models were ranked by Akaike Information Criterion corrected for small sample size (AICc). We considered all models within &#x0394;6 units of the top model as competitive, but also applied the nesting rule (<xref ref-type="bibr" rid="B44">Richards, 2008</xref>) to remove models that were more complex versions of those with better AICc support and so likely to contain uninformative parameters. We applied model averaging to this best-model set. As this dataset is relatively small (<italic>n</italic> = 16 replicates), data were also fitted into a logit Gaussian framework to check robustness and directionality of significant predictors from the beta-binomial model. Influence of spatial autocorrelation on final models was discounted (<xref ref-type="supplementary-material" rid="SM1">Supplementary Material</xref>).</p>
</sec>
<sec id="S2.SS1.SSS2">
<title>County-Level Analysis</title>
<p>Additional data on reported porpoise deaths and fishing activities were collected from all mainstem riverside counties between Huangshi-Dongzhi (&#x223C;270 km, 13 counties, 205 respondents) and all Poyang Lake counties within the distribution of the lake&#x2019;s porpoise population (6 counties, 201 respondents) during the 2011&#x2013;2012 interview survey (<xref ref-type="fig" rid="F1">Figure 1</xref>; see <xref ref-type="bibr" rid="B60">Turvey et al., 2015a</xref> for survey methods and questionnaire design), allowing investigation into predictors of mortality at finer-scale resolution (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table 2</xref>).</p>
<p>County-level mortality and fishing activity patterns were again investigated within a binomial GLM framework with models ranked by AICc, using proportion of respondents who had seen a dead porpoise during the previous 12 months as the response variable, and the same four functional gear categories analyzed above as predictors. The indirect electrofishing metric used here was mean percentage/county based on the question &#x201C;What percentage of this village practices electrofishing?&#x201D; with random values calculated from reported ranges (e.g., &#x201C;10&#x2013;30%&#x201D;), and excluding vague responses. County-level count data of cargo and fishing vessels and live porpoises were unavailable for Poyang Lake, so could not be included as predictors. The model was over-dispersed within a binomial framework and was not successfully corrected with a quasibinomial model, so a logit Gaussian model that successfully fitted the data was also used, with logit transformation of response variable. Spatial autocorrelation was not detected in any model parameters (<xref ref-type="supplementary-material" rid="SM1">Supplementary Material</xref>).</p>
</sec>
</sec>
<sec id="S2.SS2">
<title>Across-River Overlap of Porpoises and Fishing Gear</title>
<p>Along-river analyses were complemented by investigation of spatial correlation of porpoises and threats over an across-river transect. Porpoise sightings from both boat-based surveys between Ezhou-Zhenjiang, the &#x223C;650 km mainstem section containing &#x223C;80% of all sightings (<xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>; <xref ref-type="fig" rid="F1">Figure 1</xref>), have been categorized by distance from bank into four distance bins (0&#x2013;100, 101&#x2013;300, 301&#x2013;500 m, &#x003E;500 m) (unpublished data). Fishers interviewed in 2011&#x2013;2012 between Huangshi-Dongzhi (all located between Ezhou-Zhenjiang) were asked the distance from bank they used different gears; these data were categorized into the same distance bins used for porpoise data. Individual gear-use responses were assigned to all bins within a reported range (e.g., &#x201C;100&#x2013;150 m&#x201D; was assigned to 0&#x2013;100 and 101&#x2013;300 m bins). Only free-floating nets and hook-type gears were analyzed, as reported use of other gears was very low. Chi-squared goodness-of-fit tests and Spearman rank correlation were used to investigate whether porpoise observations and gears showed similar distributions.</p>
</sec>
<sec id="S2.SS3">
<title>Reproductive Patterns Over Time</title>
<p>Boat-based surveys recorded whether observations were adults or calves (2006, 348 adults, 90 calves; 2012, 318 adults, 23 calves; unpublished data). To investigate whether reproduction has been uniform over time, we used a binary GLM to quantify differences in the proportion of calves in each survey year, where individuals were coded as 1 if calf and 0 if adult. We fitted year as the sole predictor in a GLM with a binomial error structure, and assessed significance by likelihood ratio test against a model containing only the intercept.</p>
</sec>
<sec id="S2.SS4">
<title>Estimating Sustainable Offtake</title>
<p>Levels of offtake that will maintain or achieve a sustainable Yangtze finless porpoise population were estimated using a Potential Biological Removal (PBR) model and a logistic population growth model, two population models commonly used to predict cetacean population change (<xref ref-type="bibr" rid="B65">Wade, 1998</xref>; <xref ref-type="bibr" rid="B33">Monnahan et al., 2015</xref>). Theoretical removal limits were then compared with numbers of dead porpoises reported during the 2008 interview survey, to assess whether direct mortality and known causes of mortality could have driven population decline.</p>
<sec id="S2.SS4.SSS1">
<title>Potential Biological Removal Model</title>
<p>PBR values were calculated using the formula in <xref ref-type="bibr" rid="B65">Wade (1998)</xref>:</p>
<disp-formula id="S2.Ex1">
<mml:math id="M1">
<mml:mrow>
<mml:mrow>
<mml:mi>P</mml:mi>
<mml:mo>&#x2062;</mml:mo>
<mml:mi>B</mml:mi>
<mml:mo>&#x2062;</mml:mo>
<mml:mi>R</mml:mi>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mpadded width="+3.3pt">
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>m</mml:mi>
<mml:mo>&#x2062;</mml:mo>
<mml:mi>i</mml:mi>
<mml:mo>&#x2062;</mml:mo>
<mml:mi>n</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mpadded>
<mml:mo>&#x2062;</mml:mo>
<mml:mn>0.5</mml:mn>
<mml:mo>&#x2062;</mml:mo>
<mml:mpadded width="+3.3pt">
<mml:msub>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>m</mml:mi>
<mml:mo>&#x2062;</mml:mo>
<mml:mi>a</mml:mi>
<mml:mo>&#x2062;</mml:mo>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mpadded>
<mml:mo>&#x2062;</mml:mo>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>N</italic><sub><italic>min</italic></sub> = 20th percentile of estimated population size, <italic>R</italic><sub><italic>max</italic></sub> = maximum annual population growth rate, and <italic>F</italic><sub><italic>r</italic></sub> = recovery factor.</p>
<p><italic>N</italic><sub><italic>min</italic></sub> is calculated by:</p>
<disp-formula id="S2.Ex2">
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</mml:mrow>
<mml:mo>]</mml:mo>
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</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>O<sub><italic>abs</italic></sub></italic> = survey estimate of absolute abundance, <italic>Z</italic> = standard normal deviate, and <italic>CV</italic><sub><italic>abs</italic></sub> = population estimate&#x2019;s coefficient of variation.</p>
<p>Values were calculated across several populations and parameters: (1) using 2006 and 2012 population estimates, with a coefficient of variation (<italic>CV</italic><sub><italic>abs</italic></sub>) of 0.133 for 2006 and 0.159 for 2012 (<xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>); (2) using maximum annual population growth rates (<italic>R</italic><sub><italic>max</italic></sub>) of 0.04 for Indo-Pacific finless porpoise (<italic>Neophocaena phocaenoides</italic>; <xref ref-type="bibr" rid="B55">Taylor et al., 2007</xref>), and 0.035 for a semi-wild translocated Yangtze finless porpoise population (<xref ref-type="bibr" rid="B15">Huang et al., 2017</xref>); and (3) using mainstem-only and mainstem+lakes population estimates. A default recovery factor (<italic>F</italic><sub><italic>r</italic></sub>) value of 0.1 was used (<xref ref-type="bibr" rid="B66">Wade and Angliss, 1997</xref>), and the standard normal deviate <italic>Z</italic> was fixed at -0.842 (<xref ref-type="bibr" rid="B65">Wade, 1998</xref>). <italic>N</italic><sub><italic>min</italic></sub> (20th percentile of estimated population size) was calculated specifically for each estimate.</p>
</sec>
<sec id="S2.SS4.SSS2">
<title>Logistic Growth Model</title>
<p>Logistic population growth for 2006&#x2013;2012 was modeled in an Ordinary Differential Equation framework in R v3.4.3 with the DeSolve package (<xref ref-type="bibr" rid="B52">Soetaert et al., 2010</xref>), using:</p>
<disp-formula id="S2.Ex3">
<mml:math id="M3">
<mml:mrow>
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</mml:msub>
<mml:mo>&#x2062;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
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<mml:mfrac>
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</mml:mrow>
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<mml:mi>t</mml:mi>
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</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>N</italic> = population estimate in any given year, <italic>t</italic> = year, <italic>K</italic> = population size at carrying capacity, and <italic>C<sub><italic>t</italic></sub></italic> = removal rate in year <italic>t</italic>, and with annual additions (<italic>A</italic>) to the population determined by:</p>
<disp-formula id="S2.Ex4">
<mml:math id="M4">
<mml:mrow>
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</disp-formula>
<p>The values of state, <italic>r</italic>, <italic>K</italic>, and <italic>R</italic><sub><italic>max</italic></sub> were modified for each specific model. Identical <italic>R</italic><sub><italic>max</italic></sub> values were used as for PBR analysis. In the absence of known carrying capacity values, highest recorded population estimates were used as proxies for population size at carrying capacity (<italic>K</italic>): mainstem = 2,546, Dongting Lake = 50, Poyang Lake = 450, total = 3,146 (<xref ref-type="bibr" rid="B79">Zhang et al., 1993</xref>; <xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>). Range-wide population estimates were 1,800 individuals in 2006 (<xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>) and 1,040 individuals in 2012 (<xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>). Models were re-run using multiple values for starting population size and <italic>K</italic>: (1) range-wide model with <italic>N</italic><sub>(2006)</sub> = 1,800 and <italic>K</italic> = 3,146; (2) mainstem-only with <italic>N</italic><sub>(2006)</sub> = 1,225 and <italic>K</italic> = 2,546; (3&#x2013;4) models 1 and 2 re-run to estimate maximum sustainable removal rates to maintain 2006 and 2012 range-wide and mainstem-only population estimates; (5&#x2013;6) models 1 and 2 re-run to estimate actual removal rates required for observed range-wide and mainstem-only declines.</p>
</sec>
</sec>
</sec>
<sec id="S3" sec-type="results">
<title>Results</title>
<p>For 100 km-section mainstem analysis, beta-binomial best-fit models and logit Gaussian model-averaged estimates both indicate that cargo vessel and live porpoise counts are significant positive predictors of reported mortality (<xref ref-type="table" rid="T1">Tables 1</xref>, <xref ref-type="table" rid="T2">2</xref>). Fishing vessel density is also included in the final beta-binomial and logit Gaussian model sets as a negative predictor, but 95% confidence intervals include 0 in logit Gaussian model-averaged estimates, providing weaker support for a possible relationship. Best-fit models do not include other fishing activity indices. The null (intercept-only) model is included in both beta-binomial best-fit models and logit Gaussian model-averaged estimates.</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Beta-binomial model selection showing &#x0394;6 set for Yangtze-wide analysis, reporting Akaike Information Criterion corrected for small sample sizes (AICc), AICc scores (&#x0394;AICc) and Akaike&#x2019;s weight (&#x03C9;i).</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Model structure</td>
<td valign="top" align="center">AICc</td>
<td valign="top" align="center">&#x0394;AICc</td>
<td valign="top" align="center">&#x03C9;i</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess</td>
<td valign="top" align="center">107.1</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.192</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + livep</td>
<td valign="top" align="center">107.8</td>
<td valign="top" align="center">0.68</td>
<td valign="top" align="center">0.137</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo</td>
<td valign="top" align="center">108.4</td>
<td valign="top" align="center">1.29</td>
<td valign="top" align="center">0.101</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; livep</td>
<td valign="top" align="center">108.9</td>
<td valign="top" align="center">1.84</td>
<td valign="top" align="center">0.067</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + livep</td>
<td valign="top" align="center">109.2</td>
<td valign="top" align="center">2.17</td>
<td valign="top" align="center">0.065</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + hook</td>
<td valign="top" align="center">109.8</td>
<td valign="top" align="center">2.74</td>
<td valign="top" align="center">0.049</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + livep + fixed</td>
<td valign="top" align="center">110.2</td>
<td valign="top" align="center">3.11</td>
<td valign="top" align="center">0.041</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + livep + hook</td>
<td valign="top" align="center">110.6</td>
<td valign="top" align="center">3.54</td>
<td valign="top" align="center">0.033</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; fishvess + livep</td>
<td valign="top" align="center">110.6</td>
<td valign="top" align="center">3.56</td>
<td valign="top" align="center">0.032</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + net</td>
<td valign="top" align="center">111.1</td>
<td valign="top" align="center">4.05</td>
<td valign="top" align="center">0.025</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; intercept only model</td>
<td valign="top" align="center">111.3</td>
<td valign="top" align="center">4.24</td>
<td valign="top" align="center">0.023</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; elec + livep</td>
<td valign="top" align="center">111.3</td>
<td valign="top" align="center">4.27</td>
<td valign="top" align="center">0.023</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess +elec</td>
<td valign="top" align="center">111.4</td>
<td valign="top" align="center">4.31</td>
<td valign="top" align="center">0.022</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + fixed</td>
<td valign="top" align="center">111.4</td>
<td valign="top" align="center">4.34</td>
<td valign="top" align="center">0.022</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + hook</td>
<td valign="top" align="center">111.6</td>
<td valign="top" align="center">4.52</td>
<td valign="top" align="center">0.020</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + elec + livep</td>
<td valign="top" align="center">111.7</td>
<td valign="top" align="center">4.64</td>
<td valign="top" align="center">0.019</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + net</td>
<td valign="top" align="center">111.9</td>
<td valign="top" align="center">4.85</td>
<td valign="top" align="center">0.017</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fixed</td>
<td valign="top" align="center">111.9</td>
<td valign="top" align="center">4.87</td>
<td valign="top" align="center">0.017</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + elec</td>
<td valign="top" align="center">112.0</td>
<td valign="top" align="center">4.91</td>
<td valign="top" align="center">0.016</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; livep + hook</td>
<td valign="top" align="center">112.5</td>
<td valign="top" align="center">5.40</td>
<td valign="top" align="center">0.013</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; livep + fixed</td>
<td valign="top" align="center">112.5</td>
<td valign="top" align="center">5.46</td>
<td valign="top" align="center">0.013</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; livep + net</td>
<td valign="top" align="center">112.5</td>
<td valign="top" align="center">5.47</td>
<td valign="top" align="center">0.012</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; net</td>
<td valign="top" align="center">112.7</td>
<td valign="top" align="center">5.66</td>
<td valign="top" align="center">0.011</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + elec + livep</td>
<td valign="top" align="center">112.8</td>
<td valign="top" align="center">5.72</td>
<td valign="top" align="center">0.011</td>
</tr>
<tr>
<td valign="top" align="left">pd &#x223C; cargo + fishvess + livep + net</td>
<td valign="top" align="center">113.1</td>
<td valign="top" align="center">5.98</td>
<td valign="top" align="center">0.010</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>Cargo, cargo vessels; elec, proportion of fishers who think electrofishing is local problem; fishvess, fishing vessels; fixed, proportion of fishers using fixed nets; hook, proportion of fishers using hook-based gears; livep, live porpoises observed in 2006; net, proportion of fishers using free-floating nets; pd, proportion of respondents/section reporting dead porpoise observation in previous 12 months.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Beta-binomial and logit Gaussian model-averaged parameter estimates for Yangtze-wide analysis.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Parameter</td>
<td valign="top" align="center">Model-averaged</td>
<td valign="top" align="center">95%</td>
<td valign="top" align="center">95%</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">estimate</td>
<td valign="top" align="center">CI lower</td>
<td valign="top" align="center">CI upper</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="4"><bold>Beta-binomial</bold></td>
</tr>
<tr>
<td valign="top" align="left">Intercept</td>
<td valign="top" align="center">&#x2013;0.477</td>
<td valign="top" align="center">&#x2013;1.379</td>
<td valign="top" align="center">0.425</td>
</tr>
<tr>
<td valign="top" align="left">Live porpoise sightings</td>
<td valign="top" align="center">0.013</td>
<td valign="top" align="center">0.001</td>
<td valign="top" align="center">0.024</td>
</tr>
<tr>
<td valign="top" align="left">Cargo vessels</td>
<td valign="top" align="center">0.982</td>
<td valign="top" align="center">0.182</td>
<td valign="top" align="center">1.780</td>
</tr>
<tr>
<td valign="top" align="left">Fishing vessels</td>
<td valign="top" align="center">&#x2013;0.618</td>
<td valign="top" align="center">&#x2013;1.193</td>
<td valign="top" align="center">&#x2013;0.043</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Logit Gaussian</bold></td>
<td valign="top" align="center"/><td valign="top" align="center"/><td valign="top" align="center"/></tr>
<tr>
<td valign="top" align="left">Intercept</td>
<td valign="top" align="center">&#x2013;0.942</td>
<td valign="top" align="center">&#x2013;2.237</td>
<td valign="top" align="center">0.353</td>
</tr>
<tr>
<td valign="top" align="left">Live porpoise sightings</td>
<td valign="top" align="center">0.014</td>
<td valign="top" align="center">&#x2013;0.001</td>
<td valign="top" align="center">0.030</td>
</tr>
<tr>
<td valign="top" align="left">Cargo vessels</td>
<td valign="top" align="center">1.036</td>
<td valign="top" align="center">0.250</td>
<td valign="top" align="center">1.821</td>
</tr>
<tr>
<td valign="top" align="left">Fishing vessels</td>
<td valign="top" align="center">&#x2013;0.693</td>
<td valign="top" align="center">&#x2013;1.396</td>
<td valign="top" align="center">0.010</td>
</tr>
</tbody>
</table></table-wrap>
<p>For county-level analysis, model outputs indicate that mortality is not predicted by any fishing-based predictors. Final model selection includes only the null model, with all other model structures nested and discounted (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table 3</xref>).</p>
<p>Neither porpoises nor gear categories are distributed evenly across nearshore-offshore bins (porpoises, 2006: <italic>X</italic><sup>2</sup> = 62.19, <italic>p</italic> &#x003C; 0.0001; porpoises, 2012: <italic>X</italic><sup>2</sup> = 40.46, <italic>p</italic> &#x003C; 0.0001; free-floating nets, <italic>X</italic><sup>2</sup> = 106.95, <italic>p</italic> &#x003C; 0.0001; hook-type gears, <italic>X</italic><sup>2</sup> = 40.48, <italic>p</italic> &#x003C; 0.0001; df = 3 for all analyses; <xref ref-type="fig" rid="F2">Figure 2</xref>). Spearman rank tests show no correlation in porpoise or gear relative abundance across bins [porpoises vs. free-floating nets (2006), <italic>r</italic><sub><italic>s</italic></sub> = 0.80, <italic>p</italic> = 0.333; porpoises vs. free-floating nets (2012), <italic>r</italic><sub><italic>s</italic></sub> = &#x2212;0.20, <italic>p</italic> = 0.917; porpoises vs. hook-type gears (2006), <italic>r</italic><sub><italic>s</italic></sub> = 0.74, <italic>p</italic> = 0.262; porpoises vs. hook-type gears (2012), <italic>r</italic><sub><italic>s</italic></sub> = &#x2212;0.32, <italic>p</italic> = 0.684]. Gear use is biased toward near-bank habitats, being predominantly used &#x2264; 100 m from shore (hook-type gears, 53.9%; free-floating nets, 50.2%), whereas porpoises were observed most frequently 101&#x2013;300 m from shore (2006, 36.4%; 2012, 43.6%). Across-river porpoise distribution also differs significantly between survey years (<italic>X</italic><sup>2</sup> = 24.48, <italic>p</italic> &#x003C; 0.0001), with 32.1% observed &#x2264; 100 m from shore in 2006 but only 13.3% in 2012.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Proportions of porpoise observations and reported use of fishing gears in four distance-from-bank bins across Yangtze mainstem. Dark gray, 2006 porpoise data (<italic>n</italic> = 439); mid-gray, 2012 porpoise data (<italic>n</italic> = 181); hashed bar, free-floating nets (<italic>n</italic> = 283); dotted bar, hook-type gears (<italic>n</italic> = 89).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-791484-g002.tif"/>
</fig>
<p>There was a significant decrease between survey years in the proportion of calves: in 2006, mean proportion of calves was 0.20 (95% confidence intervals, 0.17&#x2013;0.24), whereas in 2012, mean proportion was 0.067 (0.045&#x2013;0.10) (<italic>X</italic><sup>2</sup> = 31.7, df = 1, <italic>p</italic> &#x003C; 0.001).</p>
<p>Using the PBR model, maximum annual removal from the total population to allow an optimum sustainable population is always &#x2264; 3.35 individuals (<xref ref-type="table" rid="T3">Table 3</xref>). The logistic model estimates removal values that are nearly ten times higher, and predicts a maximum annual removal of 30 individuals using 2006 population size to allow an optimum sustainable population (<xref ref-type="table" rid="T4">Table 4</xref>). To generate the observed 2006&#x2013;2012 decline, the logistic model always requires annual removal of &#x2265; 140 individuals. Thirty mainstem deaths were reported by respondents as having been observed during the 12 months before the 2008 interview survey (fishery-based trauma, <italic>n</italic> = 6; vessel collisions, <italic>n</italic> = 7; unknown cause, <italic>n</italic> = 17; <xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>). Using this baseline minimum removal rate, the 2006 logistic model predicts a decline, but not severe enough to produce the observed 2012 mainstem-only estimate of 505 individuals; observed deaths account for 21.0&#x2013;21.5% of total predicted annual mortality (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table 4</xref>).</p>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>Annual PBR values calculated for 2006 and 2012 porpoise population estimates.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">R<sub><italic>max</italic></sub> value</td>
<td valign="top" align="center" colspan="2">2006 estimate<hr/></td>
<td valign="top" align="center" colspan="2">2012 estimate<hr/></td>
</tr>
<tr>
<td valign="top" align="justify"/><td valign="top" align="left">Mainstem-only (N<sub><italic>min</italic></sub> = 1138.47)</td>
<td valign="top" align="left">Total population (N<sub><italic>min</italic></sub> = 1672.85)</td>
<td valign="top" align="left">Mainstem-only (N<sub><italic>min</italic></sub> = 462.71)</td>
<td valign="top" align="left">Total population (N<sub><italic>min</italic></sub> = 952.91)</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">0.04</td>
<td valign="top" align="left">2.28</td>
<td valign="top" align="left">3.35</td>
<td valign="top" align="left">0.93</td>
<td valign="top" align="left">1.91</td>
</tr>
<tr>
<td valign="top" align="left">0.0352</td>
<td valign="top" align="left">2.00</td>
<td valign="top" align="left">2.94</td>
<td valign="top" align="left">0.81</td>
<td valign="top" align="left">1.68</td>
</tr>
</tbody>
</table></table-wrap>
<table-wrap position="float" id="T4">
<label>TABLE 4</label>
<caption><p>Estimated annual removals in logistic model from mainstem-only and total porpoise populations required to maintain stable 2006 population size (maximum sustainable removal) or result in observed 2012 population size (predicted actual removal).</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">R<sub><italic>max</italic></sub></td>
<td valign="top" align="left">Estimated annual removal (2006&#x2013;2012)</td>
<td valign="top" align="left">Mainstem-only (2006 = 1,225, 2012 = 505)</td>
<td valign="top" align="left">Total population (2006 = 1,800, 2012 = 1,040)</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">0.04</td>
<td valign="top" align="left">Max sustainable removal</td>
<td valign="top" align="left">25</td>
<td valign="top" align="left">30</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Predicted actual removal</td>
<td valign="top" align="left">142&#x2013;143</td>
<td valign="top" align="left">157&#x2013;158</td>
</tr>
<tr>
<td valign="top" align="left">0.0352</td>
<td valign="top" align="left">Max sustainable removal</td>
<td valign="top" align="left">22</td>
<td valign="top" align="left">27</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Predicted actual removal</td>
<td valign="top" align="left">140&#x2013;141</td>
<td valign="top" align="left">153&#x2013;154</td>
</tr>
</tbody>
</table></table-wrap>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>Our combined analyses of different potential threats to the Critically Endangered Yangtze finless porpoise demonstrate the importance of an integrative approach for investigating complex conservation problems, rather than only considering single anthropogenic threats and their impacts within multi-threat landscapes. By assessing the information content of existing conservation data, we demonstrate that critical consideration of even limited available datasets can provide important new insights to help understand population decline and guide future work. These findings support the possibility of evidence-based conservation management even for data-poor species.</p>
<p>Although our along-river analyses were conducted at a relatively coarse spatial scale, this spatial framework has been sufficient to provide useful conservation-relevant insights in previous studies (<xref ref-type="bibr" rid="B59">Turvey et al., 2010</xref>, <xref ref-type="bibr" rid="B63">2013</xref>), and best-model sets contained better models than the null model. This approach identified a correlation between high cargo vessel densities and increased dead porpoise observations, supporting the suggestion that direct and/or indirect impacts of ship traffic (e.g., collisions, disturbance, anthropogenic noise) might be responsible for reducing porpoise viability and causing mortality (<xref ref-type="bibr" rid="B22">Li et al., 2008</xref>; <xref ref-type="bibr" rid="B67">Wang, 2009</xref>; <xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>). These findings highlight the urgent need for improved monitoring of vessel traffic and its environmental impact in the Yangtze, and further research into the dynamics and sustainability of interactions between porpoises and cargo vessels, which remain difficult to detect or infer in the absence of specific targeted studies.</p>
<p>Conversely, whereas fisheries bycatch is a key cause of mortality in small cetaceans (<xref ref-type="bibr" rid="B43">Reeves et al., 2013</xref>) and several Yangtze finless porpoise bycatch events are documented (<xref ref-type="bibr" rid="B86">Zhou and Wang, 1994</xref>; <xref ref-type="bibr" rid="B68">Wang et al., 2000</xref>, <xref ref-type="bibr" rid="B70">2015</xref>; <xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>), available data show limited correlation between porpoise deaths and fishing activity even when analyzed across multiple spatial scales. Indeed, the only statistically significant correlation is an unexpected negative relationship between fishing vessel density and reported porpoise mortality in along-river analysis, although we note that this pattern is weak or questionable because 95% confidence intervals include 0 in some model-averaged estimates; any such relationship may potentially reflect a correlation with other landscape-level factors (e.g., greater localized amounts of fish resources for both subsistence fishers and porpoises in more anthropologically undisturbed river sections). If fisheries interactions are genuinely not involved in driving porpoise decline, our across-river analyses provide a potential reason why: porpoises and fishers tend not to use the same parts of the river, with porpoises observed most frequently 101&#x2013;300 m from the bank, whereas free-floating nets and hook-type gears are used most frequently &#x2264; 100 m from the bank. Indeed, whereas hook-type gears account for 45.2% of observed porpoise bycatch events (<xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>), this gear category shows less overlap than free-floating nets with porpoise distribution.</p>
<p>However, we note that respondents reported similar levels of porpoises killed by fishery-based trauma and vessel collisions, suggesting that fisheries bycatch may also be an important driver of porpoise decline in this system. If this is indeed the case, various factors might explain the limited relationship we observed in our analyses between porpoise mortality and fishing activity. Although protocols have been developed to reduce reporting inaccuracy by respondents and detect ecological signals in interview datasets (e.g., <xref ref-type="bibr" rid="B37">Newing, 2011</xref>; <xref ref-type="bibr" rid="B61">Turvey et al., 2015b</xref>), these data can be affected by multiple biases (e.g., declining recall accuracy, misremembering) that potentially complicate our attempt to reconstruct porpoise mortality patterns. In particular, levels of bycatch reporting are often affected by respondent reticence in discussing sensitive or illegal behaviors, with fishers reluctant to report porpoise deaths (<xref ref-type="bibr" rid="B24">Lien et al., 1994</xref>; <xref ref-type="bibr" rid="B51">Slooten and Dawson, 2016</xref>). Furthermore, not all deaths will be observed, and carcasses might also drift downstream (<xref ref-type="bibr" rid="B40">Peltier et al., 2012</xref>; <xref ref-type="bibr" rid="B34">Moore et al., 2020</xref>); although we note that the coarse spatial scales used in along-river analyses should reduce mismatches between locations of porpoise deaths and subsequent carcass detections, and the fact that live porpoise counts are a significant positive predictor of dead porpoise counts in 100 km-section analysis suggests a local origin for observed dead individuals. However, our spatial data resolution may not detect finer-scale bycatch mortality patterns and correlates (especially for electrofishing, a potential threat for which we could only use indirect indices).</p>
<p>Porpoise distribution is influenced at local scales by hydrology, water quality, substrate and fish abundance (<xref ref-type="bibr" rid="B72">Wei et al., 2003</xref>; <xref ref-type="bibr" rid="B84">Zhang et al., 2015</xref>, <xref ref-type="bibr" rid="B82">2018</xref>), so regional variation in habitat use by porpoises and fishers might be associated with higher overlap and bycatch risk. We therefore recommend additional field-based research into porpoise-fisheries interactions (including spatial mapping of areas of high fishing activity, and establishment of fisher observer programs) to identify possible bycatch-risk hotspots. Data on Yangtze finless porpoise prey species are still limited (<xref ref-type="bibr" rid="B5">Chen et al., 1980</xref>; <xref ref-type="bibr" rid="B77">Yang et al., 2021</xref>); future research into the identity and diversity of porpoise prey, and their local distribution, population trends and importance in regional fisheries, is also a priority. Furthermore, 2006 and 2012 survey data show marked differences in across-river porpoise distribution, with fewer porpoises observed near the bank in 2012. If this represents a genuine change in habitat use (versus undercounting of porpoises near the bank, and furthest from mid-channel survey vessels, in 2012), porpoise-gear overlap has decreased. Ecological reasons for this shift are unclear, but it could indicate increasing anthropogenic degradation of near-shore habitats, or elevated mortality from near-shore fishing.</p>
<p>Expected proportions of calves in a healthy Yangtze finless porpoise population are unknown; no pre-decline baseline exists, and data for other porpoise taxa vary between &#x223C;2-27% of the population (<xref ref-type="bibr" rid="B20">Kasuya and Kureha, 1979</xref>; <xref ref-type="bibr" rid="B49">Siebert et al., 2006</xref>; <xref ref-type="bibr" rid="B58">Thomsen et al., 2007</xref>). Although our analysis of between-year reproductive variation is relatively simple, it indicates that significantly fewer calves were recorded in 2012 compared to 2006. We note that reproduction is an annually variable trait in many cetacean populations (e.g., <xref ref-type="bibr" rid="B28">Manlik et al., 2016</xref>), and several uncontrolled factors can influence cetacean count data (<xref ref-type="bibr" rid="B9">Dawson et al., 2008</xref>); however, both surveys were conducted using the same methods and across the same area (<xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Mei et al., 2014</xref>). We thus interpret these results as suggesting reproductive success has decreased between the two survey years. A comparable pattern was observed (although not tested statistically) during baiji decline, with proportion of observed immature individuals decreasing from 31 to 17% in 1985&#x2013;1999 (<xref ref-type="bibr" rid="B81">Zhang et al., 2003</xref>). Multiple mechanisms could reduce porpoise reproductive success and/or survivorship, hindering identification of cause(s). High concentrations of pollutants that affect cetacean reproduction and calf survival (heavy metals, persistent organic pollutants) have been found in Yangtze finless porpoise carcasses (<xref ref-type="bibr" rid="B10">Dong et al., 2006</xref>; <xref ref-type="bibr" rid="B76">Yang et al., 2008</xref>; <xref ref-type="bibr" rid="B75">Xiong et al., 2019</xref>), Yangtze fish (<xref ref-type="bibr" rid="B74">Xian et al., 2008</xref>), and the Yangtze River (<xref ref-type="bibr" rid="B35">M&#x00FC;ller et al., 2008</xref>), with highest mercury concentrations and polychlorinated biphenyl hazard quotients found in porpoise calves (<xref ref-type="bibr" rid="B10">Dong et al., 2006</xref>; <xref ref-type="bibr" rid="B76">Yang et al., 2008</xref>). Although few data exist on specific Yangtze fish decreases (including porpoise prey species), fish stocks have declined substantially through habitat loss/degradation and damming (<xref ref-type="bibr" rid="B78">Ye et al., 2013</xref>), and decreased prey availability is associated with reduced reproductive success in several cetaceans (<xref ref-type="bibr" rid="B29">Mann, 2000</xref>; <xref ref-type="bibr" rid="B11">Ford et al., 2009</xref>). Anthropogenic noise from vessels and industrial activities is a source of environmental stress for Yangtze cetaceans (<xref ref-type="bibr" rid="B85">Zhao et al., 2008</xref>; <xref ref-type="bibr" rid="B67">Wang, 2009</xref>), and is implicated in reduced porpoise reproductive success through physiological damage, hormonal stress, behavioral alteration, and ecological effects on prey species (<xref ref-type="bibr" rid="B36">Nabi et al., 2018</xref>). Reproductive fitness may also be affected by reduced genetic diversity seen in the surviving porpoise population (<xref ref-type="bibr" rid="B4">Chen et al., 2017</xref>).</p>
<p>Predicted sustainable offtake rates differ between our population models by an order of &#x223C;10 due to differences in model structure and aims: whereas logistic modeling only considers demographic and ecological parameters (e.g., point estimates of <italic>N</italic>) and does not explicitly consider uncertainty, PBR uses <italic>N</italic><sub><italic>min</italic></sub> and incorporates a precautionary recovery factor to identify whether sustainable removal thresholds have been exceeded in post-depletion populations (<xref ref-type="bibr" rid="B45">Robards et al., 2009</xref>). Conservation target-setting using the PBR approach can be affected by some sources of data uncertainty (e.g., bias in abundance estimates, catastrophic events, trends in natural mortality; <xref ref-type="bibr" rid="B41">Punt et al., 2020</xref>), but there is no evidence that these constitute significant concerns in this system. However, as PBR is a conservative management technique, higher removal rates might still be sustainable in the longer-term than predicted in our model. Furthermore, mainstem-only models might be invalidated if this section does not contain a closed population (<xref ref-type="bibr" rid="B54">Taylor, 1997</xref>), but instead experiences movement of individuals between the appended lakes, which is suggested although not demonstrated (<xref ref-type="bibr" rid="B23">Li et al., 2010</xref>; <xref ref-type="bibr" rid="B15">Huang et al., 2017</xref>). We have also assumed that modeled mortality levels represent human-caused deaths, because observed porpoise mortality has increased as the population declined over recent decades (<xref ref-type="bibr" rid="B63">Turvey et al., 2013</xref>); the number of deaths would instead have decreased with decreasing porpoise population size if these events were mostly due to natural causes, but we acknowledge that some observed deaths may be natural. Model outputs therefore represent guidelines only under certain population scenarios.</p>
<p>However, all models show that observed mortality levels are sufficient to drive decline, indicating that current direct mortality is likely to be unsustainable even with stable reproduction and carrying capacity. A precautionary approach suggests the lowest predicted sustainable removal threshold, the PBR estimates based upon 2012 porpoise population data, should constitute a management guideline (<xref ref-type="bibr" rid="B32">Milner-Gulland and Ak&#x00E7;akaya, 2001</xref>). These predicted PBR sustainable removal thresholds are comparable to values estimated for other highly threatened cetaceans (e.g., Maui&#x2019;s dolphin <italic>Cephalorhynchus hectori maui</italic>; <xref ref-type="bibr" rid="B50">Slooten and Dawson, 2008</xref>), and suggest that reported mortality from both fishing and vessel strikes exceed sustainable levels; even if either threat was mitigated effectively, direct mortality would remain too high to maintain a stable population. Using these PBR thresholds to guide management would make maximum allowable annual mortality less than one porpoise in the mainstem, and less than two porpoises for the entire Yangtze.</p>
<p>Conversely, reported deaths account for only &#x223C;21% of predicted annual mortality required to drive observed mainstem decline in the logistic model. This might suggest that reduction in survivorship and/or carrying capacity have also been important in driving decline, as demonstrated in population modeling comparing relative effects of anthropogenic removal vs. reducing prey availability in other cetaceans (<xref ref-type="bibr" rid="B73">Williams et al., 2016</xref>). We note that available mortality records were derived from a small respondent sample; for example, only 27 fishers were interviewed between Huangshi-Dongzhi in 2008, whereas this section contained 1,982 licensed fishing families in 2013 (<xref ref-type="bibr" rid="B60">Turvey et al., 2015a</xref>). Additional interviews might therefore yield considerably more records. However, as discussed above, respondent data contain multiple sources of uncertainty, making it challenging to infer the level of underestimation in our data. Although actual mortality levels could be substantially greater than estimated, we caution against extrapolating mortality data from small respondent samples across much larger respondent populations.</p>
</sec>
<sec id="S5" sec-type="conclusion">
<title>Conclusion</title>
<p>Our combined analyses of available datasets highlight what we can currently infer about threats associated with Yangtze finless porpoise decline, and also highlight what we still do not know. We provide evidence of a spatial association between mortality and cargo traffic; observed mortality levels (probably underestimates of true levels) are unsustainable; and recruitment is decreasing, although multiple factors could be driving this trend. Conversely, although we demonstrate that even a small annual mortality rate from bycatch is enough to drive porpoise decline, we cannot clarify a relationship between porpoise mortality and fishing activities using existing data, and we emphasize the urgent need for further applied research into the significance and spatial dynamics of this potential threat. These findings also suggest that existing precautionary management efforts that focus upon mitigating potential fisheries impacts within the Yangtze system may be insufficient to prevent further porpoise declines, and highlight the importance of adopting an evidence-based approach to investigate the information content of available datasets.</p>
<p>Uncertainty persists over impacts of different anthropogenic activities on porpoises across the Yangtze, and we recognize that porpoise decline might represent a cumulative effect of multiple stressors, a widely recognized problem in many aquatic systems facing complex threats; we encourage further research to investigate combined effects and potential interactions (additive, synergistic or antagonistic) between stressors in the Yangtze system (<xref ref-type="bibr" rid="B8">Crain et al., 2008</xref>; <xref ref-type="bibr" rid="B7">C&#x00F4;t&#x00E9; et al., 2016</xref>). In particular, we recognize that the inevitable biases inherent to interview datasets are likely to represent a key limitation to our current understanding of patterns, levels and drivers of porpoise mortality in the Yangtze, especially with regard to fishers reporting sensitive information to outsiders on porpoise-fisheries interactions. To reduce such data limitations, it is crucial to conduct more systematic investigation of porpoise mortality to obtain direct data on deaths caused by different anthropogenic factors, ideally through a strandings investigation program that includes post-mortem examinations of all dead individuals using internationally established protocols (<xref ref-type="bibr" rid="B70">Wang et al., 2015</xref>; <xref ref-type="bibr" rid="B16">IJsseldijk et al., 2019</xref>).</p>
<p>However, our new baseline can help guide future research priorities, highlighting the need for targeted monitoring, research and modeling of potential threats across priority habitats. The current precautionary approach to reducing fishing pressure may provide beneficial impacts on wider biodiversity, but <italic>in situ</italic> management should also mitigate additional threats. More widely, critical assessment of available data for other threatened cetaceans can hopefully be used to understand sustainability or otherwise of different human activities in other poorly understood freshwater and marine systems, as a tool for reducing bycatch associated with commercial fishing operations (e.g., to meet the newly established Import Provisions of the United States Marine Mammal Protection Act; <xref ref-type="bibr" rid="B38">NOAA Fisheries, 2021</xref>). We encourage greater collaboration and sharing of existing datasets for threatened species, to maximize understanding of conservation-relevant data content and prevent time and resources from being wasted in biodiversity conservation (<xref ref-type="bibr" rid="B26">Mace et al., 2000</xref>; <xref ref-type="bibr" rid="B13">Haddaway, 2015</xref>).</p>
</sec>
<sec id="S6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">Supplementary Material</xref>, further inquiries can be directed to the corresponding author/s.</p>
</sec>
<sec id="S7">
<title>Ethics Statement</title>
<p>The studies involving human participants were reviewed and approved by the Zoological Society of London Ethics Committee. Written informed consent for participation was not required for this study in accordance with national legislation and institutional requirements.</p>
</sec>
<sec id="S8">
<title>Author Contributions</title>
<p>LM and ST conceived ideas, designed methodology, and led writing of manuscript. ST, ZM, YH, and DW collected the data. LM, XH, and ST analyzed the data. All authors contributed critically to drafts and gave final approval for publication.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="pudiscl1" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="S9" sec-type="funding-information">
<title>Funding</title>
<p>Funding was provided by a Ph.D. studentship from the Natural Environment Research Council doctoral training partnership.</p>
</sec>
<ack><p>We thank Helen Chatterjee for logistical support.</p>
</ack>
<sec id="S11" sec-type="supplementary-material"><title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2021.791484/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2021.791484/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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