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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2021.785308</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Quantifying Mesophotic Fish Assemblages of Hawai&#x2018;i&#x2019;s Au&#x2018;au Channel: Associations With Benthic Habitats and Depth</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Boland</surname> <given-names>Raymond C.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1139386/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Hyrenbach</surname> <given-names>K. David</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/138414/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>DeMartini</surname> <given-names>Edward E.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Parrish</surname> <given-names>Frank A.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/785562/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Rooney</surname> <given-names>John J.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>NOAA NMFS Pacific Islands Fisheries Science Center</institution>, <addr-line>Honolulu, HI</addr-line>, <country>United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Natural Sciences, Hawai&#x2019;i Pacific University</institution>, <addr-line>Kaneohe, HI</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Maren Ziegler, University of Giessen, Germany</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Darren James Coker, King Abdullah University of Science and Technology, Saudi Arabia; Rene A. Abesamis, Silliman University, Philippines</p></fn>
<corresp id="c001">&#x002A;Correspondence: Raymond C. Boland, <email>Raymond.Boland@noaa.gov</email></corresp>
<fn fn-type="deceased" id="fn002"><p><sup>&#x2020;</sup>Deceased</p></fn>
<fn fn-type="other" id="fn004"><p>This article was submitted to Coral Reef Research, a section of the journal Frontiers in Marine Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>05</day>
<month>01</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>8</volume>
<elocation-id>785308</elocation-id>
<history>
<date date-type="received">
<day>29</day>
<month>09</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>12</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2022 Boland, Hyrenbach, DeMartini, Parrish and Rooney.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Boland, Hyrenbach, DeMartini, Parrish and Rooney</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Mesophotic reefs (30&#x2013;150 m) occur in the tropics and subtropics at depths beyond most scientific diving, thereby making conventional surveys challenging. Towed cameras, submersibles, and mixed-gas divers were used to survey the mesophotic reef fish assemblages and benthic substrates of the Au&#x2018;au Channel, between the Hawaiian Islands of Maui and L&#x0101;na&#x2018;i. Non-parametric multivariate analysis: Non-metric Multidimensional Scaling (NMDS), Hierarchical Cluster Analysis (HCA), Multi-Response Permutation Procedure (MRPP), and Indicator Species Analysis (ISA) were used to determine the association of mesophotic reef fish species with benthic substrates and depth. Between 53 and 115-m depths, 82 species and 10 genera of fish were observed together with 10 types of benthic substrate. Eight species of fish (<italic>Apolemichthys arcuatus</italic>, <italic>Centropyge potteri, Chaetodon kleinii, Chromis leucura, Chromis verater, Forcipiger</italic> sp., <italic>Naso hexacanthus</italic>, and <italic>Parupeneus multifasciatus</italic>) were positively associated with increasing depth, <italic>Leptoseris</italic> sp. coral cover, and hard-bottom cover, and one species (<italic>Oxycheilinus bimaculatus</italic>) of fish was positively associated with increasing <italic>Halimeda</italic> sp. algae cover. Fish assemblages associated with rubble were not significantly different from those associated with sand, <italic>Montipora</italic> coral beds and <italic>Leptoseris</italic> coral beds, but were distinct from fish assemblages associated with hard bottom. The patterns in the data suggested two depth assemblages, one &#x201C;upper mesophotic&#x201D; between 53 and 95 m and the other deeper, possibly part of a &#x201C;lower mesophotic&#x201D; assemblage between 96 and 115 m at the edge of the rariphotic and bottomfish complex.</p>
</abstract>
<kwd-group>
<kwd>mesophotic</kwd>
<kwd>reef</kwd>
<kwd>fish</kwd>
<kwd>depth</kwd>
<kwd>substrate</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="6"/>
<equation-count count="0"/>
<ref-count count="52"/>
<page-count count="11"/>
<word-count count="6718"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>Mesophotic Coral Ecosystems (MCEs) are the most understudied coral reef ecosystems in the world. MCEs are found in the tropics and subtropics between 30 and 150-m depths, a range defined by the limit of scientific scuba diving (30 m) and corals&#x2019; ability to photosynthesize (150 m) (<xref ref-type="bibr" rid="B21">Hinderstein et al., 2010</xref>). The mapping of mesophotic benthic habitats has documented distinct coral and algal substrates (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>; <xref ref-type="bibr" rid="B8">Blythe-Skyrme et al., 2013</xref>), but little data exist for the fish assemblages that inhabit these substrates, particularly in Hawai&#x2018;i. MCEs have been described as transition zones between shallow and deep-reef fish assemblages (<xref ref-type="bibr" rid="B12">Brokovich et al., 2008</xref>; <xref ref-type="bibr" rid="B51">Weijerman et al., 2019</xref>), and represent a frontier for research as demonstrated by the continuing discovery of new and conspicuous reef fish species (<xref ref-type="bibr" rid="B37">Pyle, 1996</xref>; <xref ref-type="bibr" rid="B39">Pyle et al., 2008</xref>; <xref ref-type="bibr" rid="B43">Rocha et al., 2017</xref>; <xref ref-type="bibr" rid="B2">Arango et al., 2019</xref>). Despite increasing interest in MCEs during the last decade (<xref ref-type="bibr" rid="B28">Lindfield et al., 2016</xref>; <xref ref-type="bibr" rid="B1">Abesamis et al., 2020</xref>), the effective management of this habitat remains problematic due to limited knowledge about the community structure and habitat associations of mesophotic fish assemblages (<xref ref-type="bibr" rid="B15">Dennis and Bright, 1988</xref>; <xref ref-type="bibr" rid="B21">Hinderstein et al., 2010</xref>; <xref ref-type="bibr" rid="B5">Bejarano et al., 2014</xref>; <xref ref-type="bibr" rid="B34">Pinheiro et al., 2016</xref>).</p>
<p>In Hawai&#x2018;i, MCEs have recently been described within select geographic regions in association with specific bathymetric habitat features (e.g., banks, ledges) or benthic cover (e.g., algal meadows, high coral cover) (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>; <xref ref-type="bibr" rid="B8">Blythe-Skyrme et al., 2013</xref>; <xref ref-type="bibr" rid="B38">Pyle et al., 2016</xref>). Many studies have investigated various aspects of MCE benthic habitats in the main Hawaiian Islands including coral beds, algal meadows, coral physiology, fish life histories, and fish trophic ecology (<xref ref-type="bibr" rid="B9">Boland and Parrish, 2005</xref>; <xref ref-type="bibr" rid="B22">Kahng and Kelley, 2007</xref>; <xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>; <xref ref-type="bibr" rid="B8">Blythe-Skyrme et al., 2013</xref>; <xref ref-type="bibr" rid="B14">Costa et al., 2015</xref>; <xref ref-type="bibr" rid="B35">Pochon et al., 2015</xref>; <xref ref-type="bibr" rid="B10">Bradley et al., 2016</xref>; <xref ref-type="bibr" rid="B38">Pyle et al., 2016</xref>; <xref ref-type="bibr" rid="B47">Spalding et al., 2016</xref>; <xref ref-type="bibr" rid="B3">Asher et al., 2017</xref>; <xref ref-type="bibr" rid="B51">Weijerman et al., 2019</xref>), with the number and spatial extent of surveys increasing in recent years (2009&#x2013;2018) (<xref ref-type="bibr" rid="B48">Spalding et al., 2019</xref>). Much less is known of MCEs in the Northwestern Hawaiian Islands (NWHI) as a result of the additional logistical constraints of research at these distant locations. Seven studies conducted in the NWHI have been published to date, focusing on benthic substrate cover, fish assemblages on banks, a comparison of shallow reef vs. mesophotic fish, foraging habitat of the Hawaiian Monk Seal and/or levels of fish endemism (<xref ref-type="bibr" rid="B32">Parrish et al., 2000</xref>; <xref ref-type="bibr" rid="B31">Parrish and Boland, 2004</xref>; <xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>; <xref ref-type="bibr" rid="B23">Kane et al., 2014</xref>; <xref ref-type="bibr" rid="B18">Fukunaga et al., 2016</xref>, <xref ref-type="bibr" rid="B17">2017</xref>; <xref ref-type="bibr" rid="B26">Kosaki et al., 2016</xref>).</p>
<p>Studies in Hawai&#x2018;i and elsewhere have described zonation in fish assemblages across mesophotic depths. <xref ref-type="bibr" rid="B51">Weijerman et al. (2019)</xref> divided fish assemblages of the mesophotic zone in Hawai&#x2018;i into an upper mesophotic zone (30&#x2013;59 m) and a lower mesophotic zone (60&#x2013;129 m) with deeper depths described as &#x201C;rariphotic&#x201D; and &#x201C;bathyal&#x201D; zones.</p>
<p>Mesophotic fish assemblages have been associated with various benthic habitats (<xref ref-type="bibr" rid="B15">Dennis and Bright, 1988</xref>; <xref ref-type="bibr" rid="B6">Bejarano et al., 2010</xref>; <xref ref-type="bibr" rid="B19">Garcia-Sais, 2010</xref>; <xref ref-type="bibr" rid="B3">Asher et al., 2017</xref>; <xref ref-type="bibr" rid="B49">Stefanoudis et al., 2019</xref>; <xref ref-type="bibr" rid="B52">Williams et al., 2019</xref>) and with depth (<xref ref-type="bibr" rid="B12">Brokovich et al., 2008</xref>; <xref ref-type="bibr" rid="B33">Pearson and Stevens, 2015</xref>; <xref ref-type="bibr" rid="B45">Semmler et al., 2016</xref>; <xref ref-type="bibr" rid="B3">Asher et al., 2017</xref>; <xref ref-type="bibr" rid="B46">Sih et al., 2017</xref>; <xref ref-type="bibr" rid="B13">Coleman et al., 2018</xref>; <xref ref-type="bibr" rid="B49">Stefanoudis et al., 2019</xref>; <xref ref-type="bibr" rid="B52">Williams et al., 2019</xref>) and observed as early as 1981 in the Cayman Islands (<xref ref-type="bibr" rid="B29">Lukens, 1981</xref>). <xref ref-type="bibr" rid="B50">Thresher and Colin (1986)</xref> perceived multiple &#x201C;fish communities&#x201D; within the mesophotic assemblage of fishes on the outer wall at Enewetak Atoll in the Marshall Islands; however, their categorization was not rigorously quantitative. <xref ref-type="bibr" rid="B15">Dennis and Bright (1988)</xref> recognized multiple benthic-fish associations that were related to depth at the Flower Garden banks in the northwestern Gulf of Mexico.</p>
<p>This study investigates the MCE reef fish assemblages of the Au&#x2018;au Channel between L&#x0101;na&#x2018;i and Maui in the main Hawaiian Islands using archived MCE survey data collected between 2007 and 2011 by the National Oceanic and Atmospheric Administration (NOAA) National Marine Fisheries Service (NMFS) These surveys utilized three distinct platforms: Towed Optical Assessment Device (TOAD), submersibles <italic>Pisces IV</italic> and <italic>V</italic> (SUB), and mixed-gas scuba diving (SCUBA).</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Study Site</title>
<p>Seafloor depth of Au&#x2018;au Channel (<xref ref-type="fig" rid="F1">Figure 1</xref>) ranges from 0 to approximately 250 m, with much of the area located in the mesophotic zone (<xref ref-type="bibr" rid="B14">Costa et al., 2015</xref>). During the last glacial maximum 21,000 years ago, this channel was a dry land bridge between Maui and L&#x0101;na&#x2018;i. Lakes and lagoons on this land bridge were submerged by rising sea level and became ideal habitat for hard corals and precious corals in the genera <italic>Antipathes</italic> and <italic>Myripathes</italic> (<xref ref-type="bibr" rid="B20">Grigg et al., 2002</xref>; <xref ref-type="bibr" rid="B36">Price and Elliott-Fisk, 2004</xref>). The Au&#x2018;au Channel bottom is heterogeneous and features a variety of substrate types such as large beds of <italic>Halimeda</italic> sp. algae, sand, <italic>Montipora</italic> sp. coral and <italic>Microdictyon</italic> sp. algae, hard pavement, <italic>Leptoseris</italic> sp. coral, and rubble (<xref ref-type="bibr" rid="B14">Costa et al., 2015</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Bathymetry of the Au&#x2018;au Channel with survey areas. L&#x0101;na&#x2018;i Island is on the left and Maui Island is on the right. TOAD surveys denoted by purple, Submersible surveys in blue, Diver surveys in green and Submersible and Diver surveys in black.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g001.tif"/>
</fig>
</sec>
<sec id="S2.SS2">
<title>Survey Methods</title>
<p>Visual surveys of fish and substrate cover were conducted using strip transects of various widths and distances, dependent on the survey platform. Fish were identified to the finest taxonomic level possible (ideally to species or minimally to genus) and their abundance recorded. All fish were sized (standard length, SL) to the nearest centimeter using platform-specific techniques. The TOAD and submersibles had two or more lasers spaced a specific distance apart to aid in length estimation during observations (<xref ref-type="bibr" rid="B24">Kelley et al., 2005</xref>; <xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>). Both the TOAD and submersible maintained video recordings of the survey with the laser scale within the field of view. These video recordings were matched against the observer&#x2019;s observations to control or correct for bias. To minimize possible biases and variability in fish identification and sizing, one observer (the senior author) was primarily used, with two additional trained observers. Observations from the additional observers were compared to the video log and to the primary observer&#x2019;s observations to control for bias.</p>
<p>Divers conducted transects that were 25 m long by 2 m wide (<xref ref-type="bibr" rid="B12">Brokovich et al., 2008</xref>). One diver counted and sized fish; the second diver followed and video-recorded the substrate along the transect tape.</p>
<p>Submersible transects followed a specific isobath and habitat and finished either after 20 min or when the end of the habitat was reached (<xref ref-type="bibr" rid="B24">Kelley et al., 2005</xref>). The position of the submersible was continuously recorded via TrackLink 5000HA (LinkQuest Inc.) and plotted on a bathymetric chart. Area surveyed was determined by the transect distance multiplied by a strip width of 6 m, which is the width of area of a single viewport on the submersible (<xref ref-type="bibr" rid="B24">Kelley et al., 2005</xref>). Due to the constraints of surveying fish out of a submersible viewport, only fish &#x2265;10 cm were identified and sized. Observations were verbally recorded onto the mission videotape via microphone within the command sphere and later transcribed and scored.</p>
<p>TOAD transects followed an approximately straight track, regardless of depth or substrate. The TOAD was deployed at a specific geographic location, towed continuously, tracked using GPS, and recovered at transect end. Thus, transects varied in both duration and length, with the distance of the track determined by mapping the GPS locations and calculating the linear distances between all consecutive points. Transect area surveyed was determined using transect length multiplied by the camera&#x2019;s view width of 22 m (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>). Due to the limitations of the camera only fish &#x2265;10 cm could be identified and sized.</p>
<p>Transect substrate was recorded by video. TOAD and SUB transects used the point intersect method to determine percent cover. Every 30 s of video was scored by an evenly spaced 5-point screen overlay to calculate percent cover (<xref ref-type="bibr" rid="B8">Blythe-Skyrme et al., 2013</xref>). Because divers surveyed small specific areas limited to one type of substrate, percent cover for SCUBA surveys was visually estimated along the transect. These substrate observations were classified into 10 categories: sand, hard bottom, rubble, <italic>Leptoseris</italic> sp. Coral, <italic>Montipora</italic> sp. Coral, <italic>Porites</italic> sp. Coral, Black Coral, <italic>Halimeda</italic> sp. Algae, <italic>Microdictyon</italic> sp. Algae, and <italic>Ulva</italic> sp. Algae. Percent cover data for the 10 categories were estimated for every survey.</p>
</sec>
<sec id="S2.SS3">
<title>Data Analysis</title>
<p>Survey methods varied in transect strip width and length, fish size detectability, and spanned different depths and substrates, which produced unstandardized data that were not normally distributed and contained numerous zeros and some high counts. Data were transformed into presence/absence and non-parametric multivariate analyses were employed to counter the sampling limitations and data deficiencies.</p>
<p>Fish species were divided into two life stages (juvenile, adult) using 50% of the maximum published size (<xref ref-type="bibr" rid="B40">Randall, 2005</xref>, <xref ref-type="bibr" rid="B41">2007</xref>; <xref ref-type="bibr" rid="B16">Froese and Pauly, 2014</xref>)<sup><xref ref-type="fn" rid="footnote1">1</xref></sup> as the threshold value between juvenile and adult (<xref ref-type="bibr" rid="B7">Binohlan and Froese, 2009</xref>; <xref ref-type="bibr" rid="B16">Froese and Pauly, 2014</xref>; see text footnote 1). This produced a primary matrix of 180 species-life stages and 52 surveys.</p>
<p>Mean depth and mean percent cover by substrate type were estimated for each survey, resulting in a secondary matrix of 11 environmental variables (depth plus 10 substrates) and 52 surveys. Using the PC-Ord program, these matrices were used to perform four complementary multivariate analyses: Non-metric Multidimensional Scaling (NMDS), Hierarchical Cluster Analysis (HCA), Multi-response Permutation Procedure (MRPP), and Indicator Species Analysis (ISA) (<xref ref-type="bibr" rid="B30">McCune and Grace, 2002</xref>). To make the NMDS and the HCA results comparable, both relied on the relative Sorensen distance measure. The significance for association in NMDS was estimated by 999 randomized iterations and for ISA it was 4999 permutations (<xref ref-type="bibr" rid="B27">Legendre and Legendre, 1998</xref>; <xref ref-type="bibr" rid="B30">McCune and Grace, 2002</xref>).</p>
<p>Two Mantel tests (<xref ref-type="bibr" rid="B30">McCune and Grace, 2002</xref>) were conducted to assess the null hypothesis of no relationship between the similarity of the fish community (matrix 1) and the substrate data (matrix 2) for all pair-wise surveys. NMDS was chosen over Principal Component Analysis (PCA) to compare matrix 1 with matrix 2 because of the large number of zero values and occasional large counts in data matrices (<xref ref-type="bibr" rid="B25">Kenkel and Orloci, 1986</xref>; <xref ref-type="bibr" rid="B30">McCune and Grace, 2002</xref>). HCA was used to organize the surveys into discrete groups based on similarities among fish species and utilized the overall percent of variance explained by NMDS (50%) as the threshold for these groups. These groups also indicated the five dominant benthic habitats and was the basis for the ranges of the six depth bins. MRPP tested the null hypothesis of no difference between all pair-wise group comparisons of the five benthic habitat types, and six binned depth categories. Depth bin categories were defined by 10 m depth increments, except for the first bin which was a 15 m depth increment. ISA was used to identify which fish species were indicators of the distinct MRPP groups identified on the basis of depth categories, and benthic habitat types.</p>
</sec>
</sec>
<sec id="S3" sec-type="results">
<title>Results</title>
<p>Fifty-two surveys (9 SCUBA diver, 29 SUB and 14 TOAD) were conducted between 53 and 115 meters utilizing the three survey platforms (<xref ref-type="table" rid="T1">Table 1</xref>). Eighty-two fish species and an additional ten fish genera were identified (92 total taxa). Ten different benthic substrates were observed and classified as: sand, hard bottom, rubble, <italic>Leptoseris</italic> sp. coral, <italic>Montipora</italic> sp. coral, <italic>Porites</italic> sp. coral, black coral, <italic>Halimeda</italic> sp. algae, <italic>Microdictyon</italic> sp. algae, and <italic>Ulva</italic> sp. algae. There was a significant but weak, positive relationship between fish assemblage and depth or substrate (Mantel test, <italic>r</italic> = 0.200, <italic>P</italic> &#x003C; 0.001, 999 randomizations).</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Survey methods used in this study, showing effort and number of fish recorded.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Survey method</td>
<td valign="top" align="center">Number of surveys</td>
<td valign="top" align="center">Depth range (m)</td>
<td valign="top" align="center">Survey length (m)</td>
<td valign="top" align="center">Survey width (m)</td>
<td valign="top" align="center">Total area surveyed (m<sup>2</sup>)</td>
<td valign="top" align="center">Total number of fish</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Mesophotic TOAD</td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">53&#x2013;136</td>
<td valign="top" align="center">296&#x2013;3854</td>
<td valign="top" align="center">22</td>
<td valign="top" align="center">225,646</td>
<td valign="top" align="center">997</td>
</tr>
<tr>
<td valign="top" align="left">Mesophotic SUB</td>
<td valign="top" align="center">29</td>
<td valign="top" align="center">64&#x2013;110</td>
<td valign="top" align="center">153&#x2013;833</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">46,360</td>
<td valign="top" align="center">6,052</td>
</tr>
<tr>
<td valign="top" align="left">Mesophotic SCUBA</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">48&#x2013;83</td>
<td valign="top" align="center">25</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">500</td>
<td valign="top" align="center">48</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>SCUBA, Self-Contained Underwater Breathing Apparatus; TOAD, Towed Optical Assessment Device; SUB, Pisces 4 or 5 Submersible.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<p>NMDS yielded a significant <italic>(P</italic> &#x003C; 0.001) 3-dimensional solution that altogether explained 50.4% of the variance (21.7% Axis 1: Depth, <italic>Leptoseris</italic> and Hard Bottom, 14.8% Axis 2: Montipora and 13.9% Axis 3: Halimeda) with a stress of 11.567. Using Clarke&#x2019;s rule of thumb where 5&#x2013;10 is good ordination and 10&#x2013;20 is a usable portrayal, a stress of 11.567 indicates a low risk of misinterpretation (<xref ref-type="bibr" rid="B30">McCune and Grace, 2002</xref>; <xref ref-type="fig" rid="F2">Figure 2</xref>). Pair-wise orthogonality of the 3 axes were 99.3% (axis 1 vs. axis 2), 99.3% (axis 1 vs. axis 3), and 99.7% (axis 2 vs. axis 3), indicating that all axes were aligned at nearly 90 degrees to each other. Mean depth, 2 substrate types, and 8 fish species were significantly correlated with Axis 1 (<xref ref-type="table" rid="T2">Table 2</xref>). Both age classes of <italic>Cirrhilabrus jordani</italic> but no substrates or depth, were significantly correlated with Axis 2. Finally, <italic>Halimeda</italic> substrate and Adult <italic>Oxycheilinus bimaculatus</italic> were significantly correlated with Axis 3 (<xref ref-type="table" rid="T2">Table 2</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Non-metric Multidimensional Scaling (NMDS) plot of fish species abundance and substrate categories. Samples are color-coded according to their hierarchical cluster membership. Environmental variables are shown using gradients in depth and four substrate types (Hard Bottom, <italic>Halimeda</italic>, <italic>Leptoseris</italic>, and <italic>Montipora</italic>).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g002.tif"/>
</fig>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Significant Kendall Tau correlations (<italic>P</italic> &#x003C; 0.001) of environmental variables and fish species within the axes-space of Non-metric Multidimensional Scaling.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="center" colspan="4">Axis 1 (21.7% total variance)<hr/></td>
</tr>
<tr>
<td valign="top" align="left">Environment</td>
<td valign="top" align="left">Tau value</td>
<td valign="top" align="left">Fish</td>
<td valign="top" align="center">Tau value</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Depth</td>
<td valign="top" align="left">+0.344</td>
<td valign="top" align="left"><italic>Chromis leucura</italic>, Adult</td>
<td valign="top" align="center">+0.436</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Leptoseris</italic> sp.</td>
<td valign="top" align="left">+0.482</td>
<td valign="top" align="left"><italic>Centropyge potteri</italic>, Adult</td>
<td valign="top" align="center">+0.434</td>
</tr>
<tr>
<td valign="top" align="left">Hard bottom</td>
<td valign="top" align="left">+0.351</td>
<td valign="top" align="left"><italic>Apolemichthys arcuatus</italic>, Adult</td>
<td valign="top" align="center">+0.360</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Chromis verater</italic>, Adult</td>
<td valign="top" align="center">+0.359</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Chaetodon kleinii</italic>, Adult</td>
<td valign="top" align="center">+0.342</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Forcipiger</italic> sp., Adult</td>
<td valign="top" align="center">+0.311</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Naso hexacanthus</italic>, Adult</td>
<td valign="top" align="center">+0.302</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Parupeneus multifasciatus</italic>, Adult</td>
<td valign="top" align="center">+0.297</td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><hr/></td>
</tr>
<tr>
<td valign="top" align="center" colspan="4"><bold>Axis 2 (14.8% total variance)</bold></td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><hr/></td>
</tr>
<tr>
<td valign="top" align="left"><bold>Environment</bold></td>
<td valign="top" align="left"><bold>Tau value</bold></td>
<td valign="top" align="left"><bold>Fish</bold></td>
<td valign="top" align="center"><bold>Tau value</bold></td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><hr/></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Cirrhilabrus jordani</italic>, Juvenile</td>
<td valign="top" align="center">+0.422</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left"><italic>Cirrhilabrus jordani</italic>, Adult</td>
<td valign="top" align="center">+0.328</td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><hr/></td>
</tr>
<tr>
<td valign="top" align="center" colspan="4"><bold>Axis 3 (13.9% total variance)</bold></td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><hr/></td>
</tr>
<tr>
<td valign="top" align="left"><bold>Environment</bold></td>
<td valign="top" align="left"><bold>Tau value</bold></td>
<td valign="top" align="left"><bold>Fish</bold></td>
<td valign="top" align="center"><bold>Tau value</bold></td>
</tr>
<tr>
<td valign="top" align="left" colspan="4"><hr/></td>
</tr>
<tr>
<td valign="top" align="left"><italic>Halimeda</italic></td>
<td valign="top" align="left">+0.374</td>
<td valign="top" align="left"><italic>Oxycheilinus bimaculatus</italic>, Adult</td>
<td valign="top" align="center">+0.305</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>NMDS ordination was used to identify discrete groupings of samples with similar fish community structure, using Hierarchical Clustering with a threshold of 50% for defining groupings (<xref ref-type="fig" rid="F3">Figure 3</xref>). This produced ten clusters and three ungrouped surveys (<xref ref-type="table" rid="T3">Table 3</xref> and <xref ref-type="fig" rid="F3">Figure 3</xref>). These clusters, which were grouped primarily by fish species and secondarily by substrate types had descriptors assigned based upon this hierarchy of definition (<xref ref-type="table" rid="T3">Table 3</xref>). These different groups were then plotted on the NMDS ordination graph (<xref ref-type="fig" rid="F2">Figure 2</xref>) and illustrated the relation of the groups with the substrate-defined axes.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Hierarchical clustering analysis of fish abundance by survey. Red line indicates the 50% explained variance cut-off from the NMDS, red numbers indicate the 10 clusters and blue numbers indicate surveys that were not part of a cluster. Survey by method (T, TOAD; S, Submersible; DD, Deep Diver) and date.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g003.tif"/>
</fig>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>Results of the hierarchical clustering analysis identifying and quantifying the components of clusters.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Cluster name</td>
<td valign="top" align="center"># Surveys</td>
<td valign="top" align="center">Mean depth (m)</td>
<td valign="top" align="center">Depth range (m)</td>
<td valign="top" align="left">Dominant fish (% all fish)</td>
<td valign="top" align="center"># fish species</td>
<td valign="top" align="left">Dominant substrate (% all cover)</td>
<td valign="top" align="center"># Substrate types</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Algal field transition zone with <italic>Oxycheilinus bimaculatus</italic></td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">75.4</td>
<td valign="top" align="center">65&#x2013;86.2</td>
<td valign="top" align="left"><italic>Oxycheilinus bimaculatus</italic> A (31)</td>
<td valign="top" align="center">19</td>
<td valign="top" align="left">Sand (60)</td>
<td valign="top" align="center">7</td>
</tr>
<tr>
<td valign="top" align="left">Sand, rubble and algae with <italic>Chaetodon miliaris</italic></td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">85.2</td>
<td valign="top" align="center">84.6&#x2013;85.8</td>
<td valign="top" align="left"><italic>Chaetodon miliaris</italic> A (26)</td>
<td valign="top" align="center">31</td>
<td valign="top" align="left">Sand (40)</td>
<td valign="top" align="center">7</td>
</tr>
<tr>
<td valign="top" align="left">Transition zone with <italic>Cirrhilabrus jordani</italic></td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">88.1</td>
<td valign="top" align="center">72.3&#x2013;111.1</td>
<td valign="top" align="left"><italic>Cirrhilabrus jordani</italic> A (34)</td>
<td valign="top" align="center">46</td>
<td valign="top" align="left">Sand (50)</td>
<td valign="top" align="center">9</td>
</tr>
<tr>
<td valign="top" align="left">Diver <italic>Montipora</italic> beds</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">62.7</td>
<td valign="top" align="center">50&#x2013;70</td>
<td valign="top" align="left"><italic>Cirrhilabrus jordani</italic> J (66)</td>
<td valign="top" align="center">7</td>
<td valign="top" align="left"><italic>Montipora</italic> (72)</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td valign="top" align="left">Sand and rubble with <italic>Parapercis schauinslandii</italic></td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">102.1</td>
<td valign="top" align="center">88.8&#x2013;122.7</td>
<td valign="top" align="left"><italic>Parapercis schauinslandii</italic> A (33)</td>
<td valign="top" align="center">23</td>
<td valign="top" align="left">Sand (53)</td>
<td valign="top" align="center">8</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Leptoseris</italic> bed with <italic>Chromis verater</italic> and other reef fish</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">92.3</td>
<td valign="top" align="center">85.6&#x2013;101.5</td>
<td valign="top" align="left"><italic>Chromis verater</italic> A (54)</td>
<td valign="top" align="center">69</td>
<td valign="top" align="left"><italic>Leptoseris</italic> (35)</td>
<td valign="top" align="center">8</td>
</tr>
<tr>
<td valign="top" align="left">Hard bottom and sand with <italic>Lutjanus kasmira</italic> and reef fish</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">96.0</td>
<td valign="top" align="center">74.8&#x2013;109.9</td>
<td valign="top" align="left"><italic>Lutjanus kasmira</italic> A (67)</td>
<td valign="top" align="center">51</td>
<td valign="top" align="left">Hard bottom (33)</td>
<td valign="top" align="center">8</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Chromis leucura Leptoseris</italic> beds</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">89.8</td>
<td valign="top" align="center">70&#x2013;100.4</td>
<td valign="top" align="left"><italic>Chromis leucura</italic> A (57)</td>
<td valign="top" align="center">44</td>
<td valign="top" align="left"><italic>Leptoseris</italic> (38)</td>
<td valign="top" align="center">6</td>
</tr>
<tr>
<td valign="top" align="left">Deep transition zone of <italic>Leptoseris</italic> bed with <italic>Pseudanthias hawaiiensis</italic></td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">105.7</td>
<td valign="top" align="center">99.8&#x2013;110.0</td>
<td valign="top" align="left"><italic>Pseudanthias hawaiiensis</italic> A (56)</td>
<td valign="top" align="center">29</td>
<td valign="top" align="left"><italic>Leptoseris</italic> (31)</td>
<td valign="top" align="center">6</td>
</tr>
<tr>
<td valign="top" align="left">Shallow transition zone of <italic>Leptoseris</italic> bed</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">91.7</td>
<td valign="top" align="center">87.9&#x2013;95.5</td>
<td valign="top" align="left"><italic>Chaetodon kleinii</italic> A (50)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="left">Sand (56)</td>
<td valign="top" align="center">5</td>
</tr>
<tr>
<td valign="top" align="left">Wall edge habitat</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">93.2</td>
<td valign="top" align="center">93.0&#x2013;93.4</td>
<td valign="top" align="left"><italic>Luzonichthys earlei</italic> A (85)</td>
<td valign="top" align="center">24</td>
<td valign="top" align="left">Hard bottom (67)</td>
<td valign="top" align="center">5</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Oxycheilinus bimaculatus</italic> in <italic>Montipora/Microdictyon</italic> field</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">73</td>
<td valign="top" align="center">73</td>
<td valign="top" align="left"><italic>Oxycheilinus bimaculatus</italic> J (100)</td>
<td valign="top" align="center">1</td>
<td valign="top" align="left"><italic>Montipora</italic> (50); <italic>Microdictyon</italic> (50)</td>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Aphraeus rutilans</italic> school in a <italic>Leptoseris</italic> bed</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">99.6</td>
<td valign="top" align="center">99.4&#x2013;99.8</td>
<td valign="top" align="left"><italic>Aphareus rutilans</italic> A (95)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="left"><italic>Leptoseris</italic>, (77)</td>
<td valign="top" align="center">3</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>A, Adul; J, Juvenile.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<p>The grouping pattern appeared to correlate well with the plots of substrate (<xref ref-type="fig" rid="F4">Figure 4</xref>) and fish species (<xref ref-type="fig" rid="F5">Figure 5</xref>) indicating fish assemblages were affected by substrate. There are two clusters of 7 surveys each that are defined by a damsel fish species (<italic>Chromis verater</italic> or <italic>Chromis leucura</italic>) and each species association with <italic>Leptoseris</italic> coral beds (<xref ref-type="table" rid="T3">Table 3</xref>). Another cluster of six surveys defines shallow <italic>Montipora</italic> coral beds as habitats with juvenile <italic>Cirrhilabrus jordani</italic>. A cluster of six surveys shows the relationship of adult <italic>Oxychelinus bimaculatus</italic> with <italic>Halimeda</italic> algal beds. A cluster of five surveys defined a transition zone that had adult <italic>Cirrhilabrus jordani</italic> as the dominant fish species. Clusters defined transition zones, sand and rubble zones and even hard bottom zones (<xref ref-type="table" rid="T3">Table 3</xref>). The clusters are grouped consistently in regards to their member surveys when plotted (<xref ref-type="fig" rid="F2">Figure 2</xref>) and suggests a strong positive association with substrate. These clusters defined five primary benthic habitats: Sand, Hard Bottom, <italic>Leptoseris</italic> coral beds, <italic>Montipora</italic> coral beds and Rubble. While Rubble was never a dominant substrate, it accounted for a large percentage of benthic habitat especially in the transition zone. Three singular surveys had unusual fish abundance that impacted their compatibility with other groups. The two surveys that were dominated by large schools were submersible surveys. In one case at a depth of 99 m, 85% of the observed fish were <italic>Aphraeus rutilans</italic>. In the other case at a depth 93 m, 95% of the observed fish were <italic>Luzonichthys earlei</italic>. A TOAD survey recorded a single <italic>Oxychelinus bimaculatus</italic> at a depth of 73 m (<xref ref-type="table" rid="T3">Table 3</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Non-metric Multidimensional Scaling plot of environmental variables, showing their Kendall Tau correlations with the three axes (vectors). Axis one is correlated with depth, Leptoseris and hard bottom. Axis two did not correlate with any substrate and axis three correlated with Halimeda.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g004.tif"/>
</fig>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Non-metric Multidimensional Scaling plot of fish species, showing their Kendall Tau correlations with the three axes (vectors). Axis one is correlated with depth, Leptoseris and hard bottom. Axis three is correlated with Halimeda. Axis two is not correlated with any environmental variable.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g005.tif"/>
</fig>
<p>MRPP showed that fish assemblages differed (<italic>P</italic> &#x003C; 0.001) among the five dominant benthic habitat categories (<xref ref-type="table" rid="T4">Table 4</xref>). Pairwise comparisons of fish assemblages indicated similarities among the benthic habitat types, with Rubble being central, sharing similarities with Sand, <italic>Montipora</italic> sp. coral bed, and <italic>Leptoseris</italic> sp. coral bed fish assemblages, whereas the fish assemblages of Hard Bottom only related to those of <italic>Leptoseris</italic> sp. coral beds (<xref ref-type="fig" rid="F6">Figure 6</xref>). Fish assemblages also significantly differed (<italic>P</italic> &#x003C; 0.001) between the six depth bins (<xref ref-type="table" rid="T5">Table 5</xref>). However, pairwise comparisons indicated relationships among the four shallowest depth bins (50&#x2013;95 m), with the fish assemblages of the 2 deepest depth bins (96&#x2013;105 m, 106&#x2013;115 m) showing no similarities to the shallower depth bins or to each other (<xref ref-type="fig" rid="F7">Figure 7</xref>).</p>
<table-wrap position="float" id="T4">
<label>TABLE 4</label>
<caption><p>MRPP results of benthic habitat comparison.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Comparison</td>
<td valign="top" align="center"><italic>p</italic>-value</td>
<td valign="top" align="center"><italic>A</italic>-value</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Overall</td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">0.158</td>
</tr>
<tr>
<td valign="top" align="left">Sand vs. Rubble</td>
<td valign="top" align="center">0.993</td>
<td valign="top" align="center">0.045</td>
</tr>
<tr>
<td valign="top" align="left">Sand vs. <italic>Leptoseris</italic></td>
<td valign="top" align="center"><bold>0.028</bold></td>
<td valign="top" align="center">0.042</td>
</tr>
<tr>
<td valign="top" align="left">Sand vs. Hard bottom</td>
<td valign="top" align="center"><bold>0.002</bold></td>
<td valign="top" align="center">0.091</td>
</tr>
<tr>
<td valign="top" align="left">Sand vs. <italic>Montipora</italic></td>
<td valign="top" align="center"><bold>0.020</bold></td>
<td valign="top" align="center">0.051</td>
</tr>
<tr>
<td valign="top" align="left">Rubble vs. <italic>Leptoseris</italic></td>
<td valign="top" align="center">0.748</td>
<td valign="top" align="center">0.024</td>
</tr>
<tr>
<td valign="top" align="left">Rubble vs. Hard bottom</td>
<td valign="top" align="center"><bold>0.028</bold></td>
<td valign="top" align="center">0.115</td>
</tr>
<tr>
<td valign="top" align="left">Rubble vs. <italic>Montipora</italic></td>
<td valign="top" align="center">0.174</td>
<td valign="top" align="center">0.042</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Leptoseris</italic> vs. Hard bottom</td>
<td valign="top" align="center">0.331</td>
<td valign="top" align="center">0.011</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Leptoseris</italic> vs. <italic>Montipora</italic></td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">0.195</td>
</tr>
<tr>
<td valign="top" align="left">Hard bottom vs. <italic>Montipora</italic></td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">0.192</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>Significant results are highlighted with bold font.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Multi-response permutation procedure (MRPP) relationships for benthic habitat categories. Connected benthic habitat types are not significantly different from one another in terms of their fish assemblages. <italic>P</italic>-values between the benthic habitat categories are next to the connecting lines.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g006.tif"/>
</fig>
<table-wrap position="float" id="T5">
<label>TABLE 5</label>
<caption><p>MRPP results of depth categories comparison.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Comparison</td>
<td valign="top" align="center"><italic>p</italic>-value</td>
<td valign="top" align="center"><italic>A</italic>-value</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Overall</td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">0.103</td>
</tr>
<tr>
<td valign="top" align="left">66&#x2013;75 m vs. 76&#x2013;85 m</td>
<td valign="top" align="center">0.520</td>
<td valign="top" align="center">0.011</td>
</tr>
<tr>
<td valign="top" align="left">66&#x2013;75 m vs. 86&#x2013;95 m</td>
<td valign="top" align="center"><bold>0.040</bold></td>
<td valign="top" align="center">0.059</td>
</tr>
<tr>
<td valign="top" align="left">66&#x2013;75 m vs. 96&#x2013;105 m</td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">0.108</td>
</tr>
<tr>
<td valign="top" align="left">66&#x2013;75 m vs. 106&#x2013;115 m</td>
<td valign="top" align="center"><bold>0.028</bold></td>
<td valign="top" align="center">0.081</td>
</tr>
<tr>
<td valign="top" align="left">66&#x2013;75 m vs. 50&#x2013;65 m</td>
<td valign="top" align="center">0.291</td>
<td valign="top" align="center">0.022</td>
</tr>
<tr>
<td valign="top" align="left">76&#x2013;85 m vs. 86&#x2013;95 m</td>
<td valign="top" align="center">0.150</td>
<td valign="top" align="center">0.037</td>
</tr>
<tr>
<td valign="top" align="left">76&#x2013;85 m vs. 96&#x2013;105 m</td>
<td valign="top" align="center"><bold>0.015</bold></td>
<td valign="top" align="center">0.092</td>
</tr>
<tr>
<td valign="top" align="left">76&#x2013;85 m vs. 106&#x2013;115 m</td>
<td valign="top" align="center"><bold>0.007</bold></td>
<td valign="top" align="center">0.165</td>
</tr>
<tr>
<td valign="top" align="left">76&#x2013;85 m vs. 50&#x2013;65 m</td>
<td valign="top" align="center">0.342</td>
<td valign="top" align="center">0.017</td>
</tr>
<tr>
<td valign="top" align="left">86&#x2013;75 m vs. 96&#x2013;105 m</td>
<td valign="top" align="center"><bold>0.020</bold></td>
<td valign="top" align="center">0.055</td>
</tr>
<tr>
<td valign="top" align="left">86&#x2013;75 m vs. 106&#x2013;115 m</td>
<td valign="top" align="center"><bold>0.020</bold></td>
<td valign="top" align="center">0.087</td>
</tr>
<tr>
<td valign="top" align="left">86&#x2013;75 m vs. 50&#x2013;65 m</td>
<td valign="top" align="center"><bold>0.007</bold></td>
<td valign="top" align="center">0.141</td>
</tr>
<tr>
<td valign="top" align="left">96&#x2013;105 m vs. 106&#x2013;115 m</td>
<td valign="top" align="center"><bold>0.047</bold></td>
<td valign="top" align="center">0.053</td>
</tr>
<tr>
<td valign="top" align="left">96&#x2013;105 m vs. 50&#x2013;65 m</td>
<td valign="top" align="center"><bold>0.000</bold></td>
<td valign="top" align="center">0.247</td>
</tr>
<tr>
<td valign="top" align="left">106&#x2013;115 m vs. 50&#x2013;65 m</td>
<td valign="top" align="center"><bold>0.004</bold></td>
<td valign="top" align="center">0.216</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>Significant results are highlighted with bold font.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Multi-response permutation procedure relationships for the depth domains. Connected depth types are not significantly different from one another in terms of their fish assemblages. <italic>P</italic>-values between the substrate categories are next to the connecting lines.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-785308-g007.tif"/>
</fig>
<p>Four significant Indicator Species, with values greater than 50%, were documented (<xref ref-type="table" rid="T6">Table 6</xref>). Two species were indicators of the deepest depth category (106&#x2013;115 m): <italic>Pseudanthias hawaiiensis</italic> and juvenile <italic>Parapercis schauinslandii</italic>. Another two species were indicators of a hard-bottom substrate: <italic>Pseudanthias hawaiiensis</italic> and <italic>Odontanthias fuscipinnis. Centropyge potteri</italic>, was an indicator of <italic>Leptoseris</italic> sp. coral beds.</p>
<table-wrap position="float" id="T6">
<label>TABLE 6</label>
<caption><p>Groups and their indicator species.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Group</td>
<td valign="top" align="left">Species</td>
<td valign="top" align="center"><italic>P-</italic>value</td>
<td valign="top" align="center">Indicator value (%)</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Depth range: 106&#x2013;115 m</td>
<td valign="top" align="left"><italic>Pseudanthias hawaiiensis</italic>, Adult</td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">64.5</td>
</tr>
<tr>
<td valign="top" align="left">Depth range: 106&#x2013;115 m</td>
<td valign="top" align="left"><italic>Parapercis schauinslandi</italic>, Juvenile</td>
<td valign="top" align="center"><bold>0.004</bold></td>
<td valign="top" align="center">50.2</td>
</tr>
<tr>
<td valign="top" align="left">Hard bottom</td>
<td valign="top" align="left"><italic>Pseudanthias hawaiiensis</italic>, Adult</td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">73.3</td>
</tr>
<tr>
<td valign="top" align="left">Hard bottom</td>
<td valign="top" align="left"><italic>Odontanthias fuscipinnis</italic>, Adult</td>
<td valign="top" align="center"><bold>0.001</bold></td>
<td valign="top" align="center">57.3</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Leptoseris</italic> coral</td>
<td valign="top" align="left"><italic>Centropyge potteri</italic>, Adult</td>
<td valign="top" align="center"><bold>0.009</bold></td>
<td valign="top" align="center">59.0</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>To be an Indicator, the species&#x2019; value had to &#x2265; 50%, where 50% was the overall percent of variance explained by NMDS. Significant results are highlighted in bold font.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>NMDS and HCA discerned fish assemblage associations with benthic substrates and depth in our Au&#x2018;au Channel data. NMDS Axis 1 showed the strongest association with increasing depth, hard bottom, and <italic>Leptoseris</italic> coral cover, whereas <italic>Halimeda</italic> algal fields were associated with Axis 3. Surveys conducted throughout the Hawaiian Islands by <xref ref-type="bibr" rid="B44">Rooney et al. (2010)</xref>, <xref ref-type="bibr" rid="B8">Blythe-Skyrme et al. (2013)</xref>, <xref ref-type="bibr" rid="B14">Costa et al. (2015)</xref>, and <xref ref-type="bibr" rid="B38">Pyle et al. (2016)</xref> corroborate these findings, with <italic>Leptoseris</italic> coral sp. coverage increasing between the depths of 75 and 110 m and then diminishing at greater depths. <italic>Halimeda</italic> algal fields are prevalent throughout the Au&#x2018;au Channel at 90&#x2013;100 m depths (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>). <italic>Leptoseris coral</italic> sp. and hard-bottom substrates increased with depth and supported a diversity of fishes including highly abundant planktivores such as <italic>Chromis verater</italic> and <italic>C. leucura</italic>. Increases in specific fish trophic groups associated with increasing depth and hard bottom have been described by <xref ref-type="bibr" rid="B50">Thresher and Colin (1986)</xref> who saw an increase in planktivores and <xref ref-type="bibr" rid="B3">Asher et al. (2017)</xref> who observed greater abundance and species in mobile invertivores.</p>
<p><italic>Oxycheilinus bimaculatus</italic> is a wrasse that has a preference for algal beds and rubble fields (<xref ref-type="bibr" rid="B41">Randall, 2007</xref>). <italic>Halimeda</italic> fields comprise much bottom area in the Au&#x2018;au Channel (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>) and are bordered by transition zones of rubble or sand. Both <italic>Oxycheilinus bimaculatus</italic> and <italic>Halimeda</italic> are associated with axis three as indicators of an algal field habitat.</p>
<p><italic>Montipora</italic> coral beds, another prevalent substrate in Au&#x2018;au Channel (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>), occurred only between 50 and 70-m depths; this habitat was populated by small-bodied and juvenile fish, primarily by juvenile and adult <italic>Cirrhilabrus jordani</italic>. <italic>Montipora</italic> coral beds were not strongly associated with a specific NMDS axis; however, they were most positively associated (tau value = 0.127) with Axis 2 and both life stages of <italic>Cirrhilabrus jordani</italic>. Axis 2 thus represents the <italic>Montipora</italic> coral bed habitat found at 50&#x2013;70 m.</p>
<p>Large algal beds became obscured in our comparison between fish assemblages and substrate because the surveys that had algal beds contained larger areas of sand, rubble, or <italic>Montipora</italic> coral. The dominant cover was represented by five groups: Sand, Rubble, Hard Bottom, and <italic>Leptoseris</italic> and <italic>Montipora</italic> corals. Rubble was the central substrate with Sand, <italic>Montipora</italic>, and <italic>Leptoseris</italic> all associated with Rubble, but with no inter-relationship between each other. This result indicates that rubble is a transitional substrate that borders all of these habitats. <italic>Leptoseris</italic> coral also was associated with Hard Bottom, most likely because <italic>Leptoseris</italic> usually occurred in areas that had exposed Hard Bottom (<xref ref-type="bibr" rid="B44">Rooney et al., 2010</xref>; <xref ref-type="bibr" rid="B8">Blythe-Skyrme et al., 2013</xref>). This is reflected by the axes on our NMDS plot: Axis 3 represents the <italic>Halimeda</italic> sp. algae (Sand) and transition zones (Rubble), whereas Axis 1 represents the separate <italic>Leptoseris</italic> coral and Hard Bottom habitats.</p>
<p>Fish assemblages thus were inter-related in a manner that created two groups. The first set of inter-relationships indicates a clear depth range of associated fish assemblages: 50&#x2013;95 m. This depth pattern seems to form an &#x201C;upper&#x201D; mesophotic fish assemblage in the Au&#x2018;au Channel. Deeper than 95 m the assemblages are unrelated to each other or the &#x201C;upper&#x201D; group which may mean that these depths are either a transition zone to deep ocean fish assemblages or that they form a &#x201C;lower&#x201D; mesophotic reef fish assemblage. <xref ref-type="bibr" rid="B34">Pinheiro et al. (2016)</xref>, <xref ref-type="bibr" rid="B45">Semmler et al. (2016)</xref>, <xref ref-type="bibr" rid="B4">Baldwin et al. (2018)</xref>, <xref ref-type="bibr" rid="B42">Rocha et al. (2018)</xref>, and <xref ref-type="bibr" rid="B51">Weijerman et al. (2019)</xref> describe similar breaks in &#x201C;upper,&#x201D; &#x201C;lower,&#x201D; and &#x201C;rariphotic&#x201D; fish assemblages at similar depths.</p>
<p>Four fish species showed relationships with either depth or substrate, with one appearing as an indicator for both. Adult <italic>Pseudanthias hawaiiensis</italic> and juvenile <italic>Parapercis schauinslandi</italic> were indicators of the deepest depth range of 106&#x2013;115 m. <italic>Parapercis schauinslandi</italic> primarily occupies the sand and rubble that is found to greater extents at this depth. The <italic>P. schauinslandi</italic> that occur here appear to be mostly juveniles or small adults, which might indicate that the deep sand fields at the edge of <italic>Leptoseris</italic> beds are locations for juvenile recruitment, analogous to what <xref ref-type="bibr" rid="B11">Brokovich et al. (2007)</xref> found for a pomancanthid angelfish in the Gulf of Aqaba.</p>
<p><italic>Centropyge potteri, Pseudanthias hawaiiensis</italic>, and <italic>Odontanthias fuscipinnis</italic> were indicator species for Hard Bottom. <italic>Pseudanthias hawaiiensis</italic> and <italic>O. fuscipinnis</italic> are usually found in areas of high relief, such as steep slopes or walls (<xref ref-type="bibr" rid="B41">Randall, 2007</xref>), corresponding to our Hard Bottom category. <italic>Pseudanthias hawaiiensis</italic> is a known deep-water species (<xref ref-type="bibr" rid="B41">Randall, 2007</xref>) and Hard Bottom increased as depth increased, further linking this species to the substrate and depth strata. NMDS results associating <italic>Centropyge potteri</italic> with rugose <italic>Leptoseris</italic> coral beds are consistent with the species preference for coral reef habitat (<xref ref-type="bibr" rid="B41">Randall, 2007</xref>).</p>
<p>ISA and MRPP results are further consistent with the original NMDS analysis, where <italic>Pseudanthias hawaiiensis</italic> and <italic>Centropyge potteri</italic> positively associated with Axis 1, the axis of Depth (<italic>Pseudanthias hawaiiensis</italic>), Hard Bottom (<italic>Pseudanthias hawaiiensis</italic>), and <italic>Leptoseris</italic> sp. coral (<italic>Centropyge potteri</italic>). This result indicates that mesophotic fish assemblages are associated primarily with specific benthic habitats similar to what was observed in the Gulf of Mexico by <xref ref-type="bibr" rid="B15">Dennis and Bright (1988)</xref>, and in Puerto Rico by <xref ref-type="bibr" rid="B6">Bejarano et al. (2010)</xref> and <xref ref-type="bibr" rid="B19">Garcia-Sais (2010)</xref>.</p>
<p>In the Au&#x2018;au Channel of Hawai&#x2018;I we observed what appeared to be a distinct &#x201C;upper&#x201D; mesophotic fish assemblage and either a &#x201C;lower&#x201D; or transitional assemblage as observed by <xref ref-type="bibr" rid="B34">Pinheiro et al. (2016)</xref>, <xref ref-type="bibr" rid="B45">Semmler et al. (2016)</xref>, <xref ref-type="bibr" rid="B4">Baldwin et al. (2018)</xref>, and <xref ref-type="bibr" rid="B51">Weijerman et al. (2019)</xref>.</p>
<p>Our analysis (NMDS, HCA, MRPP, and ISA) indicate that the mesophotic fish assemblage of the Au&#x2018;au Channel can be divided into an &#x201C;upper&#x201D; (50&#x2013;95 m) and &#x201C;lower&#x201D; (96&#x2013;115 m) group with specific species associated with specific benthic habitats. This is similar to what <xref ref-type="bibr" rid="B49">Stefanoudis et al. (2019)</xref> observed with mesophotic fish assemblage variance associated primarily with depth followed by benthic habitat. Further studies of fish (and other) assemblage components of mesophotic reef ecosystems are needed to further determine zonation of assemblages with depth and/or benthic habitat.</p>
</sec>
<sec id="S5" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="S6">
<title>Ethics Statement</title>
<p>No animals were sampled by this project and thus there was no requirement for ethical review and approval for an animal study.</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>RB, FP, and JR conducted the surveys. KH, ED, and RB conducted the data analysis. RB wrote the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="pudiscl1" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="S8" sec-type="funding-information">
<title>Funding</title>
<p>Funding for remote camera surveys, submersible dives and technical scuba diving were awarded under NOAA grants: NA10OAR4300132, NA07NOS4780187, NA07NOS4780188, NA07NOS4780189, NA07NOS4780190, NA05OAR4301108, and NA09OAR4300219.</p>
</sec>
<ack>
<p>We thank C. Kelley for translating the submersible tracks and plots and C. Bradley for her advice and for being a great sub diving buddy. Funding and support was provided through the NOAA NCCOS Deep-CRES Program.</p>
</ack>
<sec id="S10" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2021.785308/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2021.785308/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.docx" id="FS1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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<fn-group>
<fn id="footnote1"><label>1</label><p><ext-link ext-link-type="uri" xlink:href="http://FishBase.org">FishBase.org</ext-link></p></fn>
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