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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2017.00407</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Importance of <italic>Mesodinium rubrum</italic> at Post-Spring Bloom Nutrient and Phytoplankton Dynamics in the Vertically Stratified Baltic Sea</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Lips</surname> <given-names>Inga</given-names></name>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/333697/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Lips</surname> <given-names>Urmas</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/503038/overview"/>
</contrib>
</contrib-group>
<aff><institution>Department of Marine Systems, Tallinn University of Technology</institution>, <addr-line>Tallinn</addr-line>, <country>Estonia</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Riina Klais, University of Tartu, Estonia</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Matthew D. Johnson, Woods Hole Oceanographic Institution, United States; Harri Kuosa, Finnish Environment Institute, Finland</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Inga Lips <email>inga.lips&#x00040;ttu.ee</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Marine Ecosystem Ecology, a section of the journal Frontiers in Marine Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>12</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>407</elocation-id>
<history>
<date date-type="received">
<day>21</day>
<month>09</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>11</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Lips and Lips.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Lips and Lips</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>The inter-annual dynamics of the photosynthetic ciliate <italic>Mesodinium rubrum</italic> in the central Gulf of Finland in spring-summer continuum during 5 years were followed. The analysis was mainly based on high-resolution measurements and sampling in the surface layer along the ferry route Tallinn-Helsinki. The main purpose was to analyze the dynamics of <italic>M. rubrum</italic> biomass, its contribution to the photosynthetic plankton biomass, and the influence of water temperature and variations of inorganic nutrients in the surface and sub-surface layer on its dynamics. The analysis revealed that the outcome of the <italic>M. rubrum</italic> bloom in spring was largely related to the surface layer water temperature&#x02014;in the years of earlier warming, the higher biomass of this species was formed. The photosynthetic ciliate was an important primary producer in all studied years during the late phase or post-spring bloom period in the Gulf of Finland. The maximum proportion of <italic>M. rubrum</italic> in the photosynthetic plankton community was estimated up to 88% in May and up to 91% in June. We relate the observed post-spring bloom decrease of phosphate concentrations in the surface layer to the dominance and growth of <italic>M. rubrum</italic>. We suggest that this link can be explained by the vertical migration behavior of <italic>M. rubrum</italic> and phosphate utilization in the surface layer coupled with inorganic nitrogen assimilation in the sub-surface layer. Thus, the dynamics of <italic>M. rubrum</italic> could strongly influence the amount of post-spring bloom excess <inline-formula><mml:math id="M1"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the euphotic layer and the depth of nitracline in the Gulf of Finland.</p></abstract>
<kwd-group>
<kwd><italic>Mesodinium rubrum</italic></kwd>
<kwd>spring bloom</kwd>
<kwd>nutrients</kwd>
<kwd>stratification</kwd>
<kwd>Baltic Sea</kwd>
</kwd-group>
<contract-num rid="cn001">IUT (IUT19-6)</contract-num>
<contract-num rid="cn002">8930</contract-num>
<contract-num rid="cn003">3.2.0802.11-0043</contract-num>
<contract-sponsor id="cn001">Haridus- ja Teadusministeerium<named-content content-type="fundref-id">10.13039/501100003510</named-content></contract-sponsor>
<contract-sponsor id="cn002">Eesti Teadusfondi<named-content content-type="fundref-id">10.13039/501100001837</named-content></contract-sponsor>
<contract-sponsor id="cn003">European Regional Development Fund<named-content content-type="fundref-id">10.13039/501100008530</named-content></contract-sponsor>
<counts>
<fig-count count="7"/>
<table-count count="3"/>
<equation-count count="1"/>
<ref-count count="70"/>
<page-count count="16"/>
<word-count count="10639"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Phytoplankton production, together with the terrestrial organic carbon load, is the largest primary source of organic carbon to the Baltic Sea (Kulinski and Pempkowiak, <xref ref-type="bibr" rid="B34">2011</xref>). As total annual ecosystem respiration in temperate estuaries and estuarine type seas like Baltic Sea exceeds gross primary production, the temporary shift to autotrophy state only occurs during seasonal and episodic bloom events of photosynthetic plankton when photosynthesis exceeds total system respiration (Cloern et al., <xref ref-type="bibr" rid="B6">2014</xref>). In the Baltic Sea, during the phytoplankton spring bloom, up to 60% of annual carbon fixation takes place, and 40&#x02013;80% of this fixed carbon sinks out from the surface layer (Heiskanen, <xref ref-type="bibr" rid="B19">1998</xref>; Tamelander and Heiskanen, <xref ref-type="bibr" rid="B64">2004</xref>). The spring bloom leads to depletion of inorganic nutrients in the euphotic layer and through the sedimentation of phytoplankton-derived organic carbon to the acceleration of benthic respiration and nutrient regeneration rates (Conley and Johnstone, <xref ref-type="bibr" rid="B7">1995</xref>).</p>
<p>Spring bloom in the Baltic Sea is co-dominated by diatoms and dinoflagellates (e.g., Kononen and Niemi, <xref ref-type="bibr" rid="B33">1984</xref>; Wasmund and Uhlig, <xref ref-type="bibr" rid="B69">2003</xref>). The late phase of the spring bloom (in May) in the Gulf of Finland is dominated by vertically migrating dinoflagellates together with ciliates (Heiskanen, <xref ref-type="bibr" rid="B18">1995</xref>; H&#x000F6;glander et al., <xref ref-type="bibr" rid="B21">2004</xref>; Lips et al., <xref ref-type="bibr" rid="B43">2014</xref>). Ciliates are an important trophic link between primary producers and metazoa consuming a significant fraction of small-sized phytoplankton and bacterioplankton production and are important in remineralization of macronutrients (Rivkin et al., <xref ref-type="bibr" rid="B58">1999</xref>; Calbet and Landry, <xref ref-type="bibr" rid="B4">2004</xref>). Besides this, ciliates can also be significant contributors to primary production through mixotrophy which is the occurrence of phagotrophy and phototrophy in the same organism. Mixotrophic oligotrichs have been reported both in freshwater and in seawater ecosystems (Esteban et al., <xref ref-type="bibr" rid="B13">2010</xref>).</p>
<p>Mass occurrences of photosynthetic ciliate <italic>Mesodinium rubrum</italic> Lohmann 1908 (<italic>Myrionecta rubra</italic> Jankowski 1976) are reported around the world (e.g., Mackenzie and Gillespie, <xref ref-type="bibr" rid="B46">1986</xref>; Crawford, <xref ref-type="bibr" rid="B8">1989</xref>; Wilkerson and Grunseich, <xref ref-type="bibr" rid="B70">1990</xref>; Cloern et al., <xref ref-type="bibr" rid="B5">1994</xref>; Johnson et al., <xref ref-type="bibr" rid="B28">2013</xref>; Kang et al., <xref ref-type="bibr" rid="B30">2013</xref>). In the Baltic Sea, the highest abundances/biomasses and largest size distribution of <italic>M. rubrum</italic> are observed after the diatom-dinoflagellate dominated spring bloom, usually in May&#x02013;June (Lindholm, <xref ref-type="bibr" rid="B40">1985</xref>; Passow, <xref ref-type="bibr" rid="B53">1991</xref>; Rychert, <xref ref-type="bibr" rid="B59">2004</xref>; Thamm et al., <xref ref-type="bibr" rid="B65">2004</xref>). The peak of <italic>M. rubrum</italic> biomass mostly coincides with the period when nitrates are exhausted from the upper mixed layer and the increase of photosynthetic biomass is mostly regarded to be based on regenerated nutrients (according to Dugdale and Goering, <xref ref-type="bibr" rid="B10">1967</xref>).</p>
<p><italic>M. rubrum</italic> is extremely mobile, known to be fastest autotroph in the sea with a swimming velocity that is reported to reach 8.5 mm s<sup>&#x02212;1</sup> (30 m h<sup>&#x02212;1</sup>; Smayda, <xref ref-type="bibr" rid="B61">2010</xref>) and showing marked phototaxis and vertical migrations (Lindholm, <xref ref-type="bibr" rid="B40">1985</xref>). Some studies already a long time ago demonstrated the very high rate of primary production of this species (e.g., Mackenzie and Gillespie, <xref ref-type="bibr" rid="B46">1986</xref>; Crawford, <xref ref-type="bibr" rid="B8">1989</xref>; Stoecker et al., <xref ref-type="bibr" rid="B63">1991</xref>; review by Johnson, <xref ref-type="bibr" rid="B26">2011</xref>). Increased temperature and water column stability, decreased salinity and depletion of dissolved inorganic nitrogen from the surface layer are known to have positive influence to the occurrence and abundance of <italic>M. rubrum</italic> (Lindholm and M&#x000F6;rk, <xref ref-type="bibr" rid="B41">1990</xref>; Cloern et al., <xref ref-type="bibr" rid="B5">1994</xref>; Montagnes et al., <xref ref-type="bibr" rid="B50">2008</xref>; Johnson et al., <xref ref-type="bibr" rid="B28">2013</xref>) in different locations worldwide. In several studies, the ability of directly utilize nitrate, ammonium, dissolved organic nitrogen (Lindholm and M&#x000F6;rk, <xref ref-type="bibr" rid="B41">1990</xref>; Wilkerson and Grunseich, <xref ref-type="bibr" rid="B70">1990</xref>; Tong et al., <xref ref-type="bibr" rid="B68">2015</xref>) and phosphates (review by Lindholm, <xref ref-type="bibr" rid="B40">1985</xref>; Tong et al., <xref ref-type="bibr" rid="B68">2015</xref>) have been reported. <italic>M. rubrum</italic> mass occurrences tend to develop in a chemical environment where competing photosynthetic species are a resource (nutrient) limited or are not able to migrate vertically to exploit the pools of dissolved inorganic nutrients below the euphotic layer. Ability to migrate vertically complemented with efficient nutrient uptake has been considered to enable <italic>M. rubrum</italic> to compete with phytoplankters (Stoecker et al., <xref ref-type="bibr" rid="B63">1991</xref>).</p>
<p>The main aim of this paper is to present the interannual dynamics of photosynthetic ciliate <italic>M. rubrum</italic> in the central Gulf of Finland in spring-summer continuum and to analyze how the increase in mixotrophic ciliate biomass affects the spatial distribution (both horizontal and vertical) and temporal variation of nutrients in the stratified water column. We hypothesize that the magnitude and intensity of <italic>M. rubrum</italic> bloom has a significant impact on the inorganic nutrient concentrations after the spring bloom and hence may influence the outcome of summer phytoplankton blooms. The analysis is based on high-resolution measurements and sampling in the surface layer along the ferry route Tallinn-Helsinki complemented with vertical profiling and sampling through the water column at one station close to the ferry line. We recognize that <italic>M. rubrum</italic> belongs to a species complex (Johnson et al., <xref ref-type="bibr" rid="B27">2016</xref>) and that our data may include <italic>M. major</italic> and/or multiple variants of <italic>M. rubrum</italic>. However, since we did not measure the diversity of genetic variants, we will refer to all observed <italic>Mesodinium</italic> ciliates as <italic>M. rubrum</italic>.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Study region</title>
<p>The dataset analyzed was collected during 5 years (2009&#x02013;2012, 2014) in the central part of the Gulf of Finland, the easternmost basin of the Baltic Sea (Figure <xref ref-type="fig" rid="F1">1</xref>). The Gulf of Finland is a stratified elongated estuarine basin where the general water movement in the surface layer is anticlockwise (Alenius et al., <xref ref-type="bibr" rid="B1">1998</xref>) but the dynamics of water masses are very much meteorologically driven at the mesoscale. The surface layer salinity in the area is typically between 4 and 6 g kg<sup>&#x02212;1</sup>, decreasing from west to east due to the major river discharge at the eastern end of the Gulf and slightly from south to north due to the anti-clockwise general circulation. A seasonal variation of inorganic nutrient concentrations is observed in the Gulf of Finland upper layer&#x02014;minimum values in summer and maximum in winter. Nitrogen is considered the limiting nutrient in the Baltic Sea, and after the development of thermal stratification in spring the nitrogen-rich deeper layers are separated from the nitrogen-depleted surface layer causing the rapid decline in the phytoplankton biomass co-dominated by diatoms and dinoflagellates. At the same time there can be observed the residual amounts of phosphates and silicates in the surface layer after the spring bloom (e.g., Tamelander and Heiskanen, <xref ref-type="bibr" rid="B64">2004</xref>). In summer, the strong stratification and nitrogen limitation give competitive advantages for cyanobacteria (Lips and Lips, <xref ref-type="bibr" rid="B42">2008</xref>) able to fix molecular nitrogen and photosynthetic species able to migrate vertically in the water column (Lips et al., <xref ref-type="bibr" rid="B45">2011</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Map of the Baltic Sea and the study area. Ferrybox route is shown as a solid line and Station AP5 as a black circle.</p></caption>
<graphic xlink:href="fmars-04-00407-g0001.tif"/>
</fig>
</sec>
<sec>
<title>Measurements and sample analysis</title>
<p>Measurements were conducted using autonomous ferrybox system (-4H- Jena Engineering GmbH) installed on board the passenger ferry &#x0201C;Baltic Princess&#x0201D; (AS Tallink Grupp) plying between Tallinn and Helsinki (Figure <xref ref-type="fig" rid="F1">1</xref>) in 2009&#x02013;2012 and 2014. Seawater was pumped through the measuring system from &#x0007E;4 to 5 m depth while the ferry was moving at an average speed of 15&#x02013;16 knots. The temperature, salinity, and chlorophyll <italic>a</italic> (Chl <italic>a</italic>) fluorescence were measured with the time resolution of 20 s corresponding approximately to a spatial resolution of 160 m.</p>
<p>Weekly-biweekly water sampling from up to 17 locations along the 75-km-long ferry route was conducted using an automatic refrigerating (4&#x000B0;C) sampler (Sigma 900 MAX), being part of the ferrybox system. Sampling dates and number of samples collected for nutrient and phytoplankton analyses on each date along the south-north transect are shown in Table <xref ref-type="table" rid="T1">1</xref>. Altogether 753 samples were collected from the surface layer in five studied years and analyzed to determine the concentrations of <inline-formula><mml:math id="M2"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="M3"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M4"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, Chl <italic>a</italic>, and phytoplankton species composition, wet weight, and carbon (C) biomass.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Ferrybox sampling dates and number of samples (<italic>n</italic>) in different years.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>2009</bold></th>
<th valign="top" align="center"><bold><italic>n</italic></bold></th>
<th valign="top" align="center"><bold>2010</bold></th>
<th valign="top" align="center"><bold><italic>n</italic></bold></th>
<th valign="top" align="center"><bold>2011</bold></th>
<th valign="top" align="center"><bold><italic>n</italic></bold></th>
<th valign="top" align="center"><bold>2012</bold></th>
<th valign="top" align="center"><bold><italic>n</italic></bold></th>
<th valign="top" align="center"><bold>2014</bold></th>
<th valign="top" align="center"><bold><italic>n</italic></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">5.04.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">4.04.2010</td>
<td valign="top" align="center">17</td>
<td/>
<td/>
<td valign="top" align="center">2.04.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">06.04.2014</td>
<td valign="top" align="center">9</td>
</tr>
<tr>
<td valign="top" align="left">12.04.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">12.04.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">11.04.2011</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">9.04.2012</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">13.04.2014</td>
<td valign="top" align="center">9</td>
</tr>
<tr>
<td valign="top" align="left">19.04.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">19.04.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">17.04.2011</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">16.04.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">22.04.2014</td>
<td valign="top" align="center">10</td>
</tr>
<tr>
<td valign="top" align="left">26.04.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">27.04.2010</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">24.04.2011</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">23.04.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">28.04.2014</td>
<td valign="top" align="center">10</td>
</tr>
<tr>
<td valign="top" align="left">3.05.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">3.05.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">2.05.2011</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">1.05.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">04.05.2014</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td valign="top" align="left">10.05.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">10.05.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">8.05.2011</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">7.05.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">15.05.2014</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td valign="top" align="left">17.05.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">17.05.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">15.05.2011</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">14.05.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">20.05.2014</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td valign="top" align="left">24.05.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">24.05.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">22.05.2011</td>
<td valign="top" align="center">17</td>
<td/>
<td/>
<td valign="top" align="center">25.05.2014</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td valign="top" align="left">31.05.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">31.05.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">1.06.2011</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">28.05.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">01.06.2014</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="center">7.06.2010</td>
<td valign="top" align="center">16</td>
<td/>
<td/>
<td valign="top" align="center">7.06.2012</td>
<td valign="top" align="center">12</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">14.06.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">14.06.2010</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">12.06.2011</td>
<td valign="top" align="center">9</td>
<td/>
<td/>
<td valign="top" align="center">10.06.2014</td>
<td valign="top" align="center">11</td>
</tr>
<tr>
<td valign="top" align="left">21.06.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">21.06.2010</td>
<td valign="top" align="center">17</td>
<td/>
<td/>
<td valign="top" align="center">17.06.2012</td>
<td valign="top" align="center">12</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">28.06.2009</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">30.06.2010</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">26.06.2011</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">25.06.2012</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">25.06.2014</td>
<td valign="top" align="center">11</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Sampling and measurements on board the research vessel SALME were performed at the station AP5 (Figure <xref ref-type="fig" rid="F1">1</xref>) in spring-summer 2010&#x02013;2012 and 2014 (the sampling days and depths can be seen in <bold>Figure 3</bold>). CTD measurements using an Ocean Seven 320<italic>plus</italic> CTD probe (Idronaut S.r.l.) equipped with a Seapoint Chl <italic>a</italic> fluorometer were performed, and water samples with a vertical resolution from 5 to 10 m were collected. Collected water samples were analyzed to determine the same parameters as from ferrybox samples. On 20&#x02013;21 May 2014, the 24 h campaign for measurements and sampling was performed. Vertical profiles of temperature, salinity, Chl <italic>a</italic> fluorescence and dissolved oxygen content were registered together with phytoplankton sampling with 2 h interval. Samples for nutrient analysis were collected with 6 h interval.</p>
<p>Inorganic nutrients were analyzed with the automatic nutrient analyzers &#x003BC;Mac 1000 (Systea S.r.l.) and Lachat QuikChem 8500 Series 2 (Lachat Instruments, Hach Company). The nutrient analyses were performed according to the guidelines of the American Public Health Association (APHA, <xref ref-type="bibr" rid="B3">1992</xref>; methods 4500-NO<sub>3</sub> and 4500-P for &#x003BC;Mac 1000) and recommendations made by USEPA, ISO, and DIN standards (methods 31-107-04-1-D NO<sub>3</sub> (Egan, <xref ref-type="bibr" rid="B12">2000</xref>) and 31-115-01-1-I PO<sub>4</sub> (Ammerman, <xref ref-type="bibr" rid="B2">2001</xref>) for the Lachat instrument). The lower detection range for <inline-formula><mml:math id="M5"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="M6"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M7"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was 0.03 and 0.07 &#x003BC;M, respectively.</p>
<p>The Chl <italic>a</italic> concentration in the water samples was determined using Whatman GF/F glass fiber filters following extraction at room temperature in the dark with 96% ethanol for 24 h. The Chl <italic>a</italic> content from the extract was measured spectrophotometrically (Thermo Helios &#x003B3;) in the laboratory (HELCOM, <xref ref-type="bibr" rid="B20">1988</xref>). Chl <italic>a</italic> fluorescence measured on board the research vessel and by the ferrybox system was calibrated against Chl <italic>a</italic> measured in the water samples. For each device and season, a linear regression equation between fluorescence and Chl <italic>a</italic> was found and used to convert fluorescence values into Chl <italic>a</italic> content values.</p>
<p>Phytoplankton sub-samples (100 ml) were preserved and analyzed according to the HELCOM recommendations and EVS-EN 15972:2011 standard. The wet weight biomasses were calculated according to Olenina et al. (<xref ref-type="bibr" rid="B51">2006</xref>), and the phytoplankton carbon (C) content was calculated using C:biovolume factors according to Menden-Deuer and Lessard (<xref ref-type="bibr" rid="B47">2000</xref>). Carbon biomass of naked ciliates was calculated according to the method described by Putt and Stoecker (<xref ref-type="bibr" rid="B55">1989</xref>).</p>
</sec>
<sec>
<title>Calculations</title>
<p>For the years, when the autonomous profiler data were available, the stratification parameter <italic>P</italic> [<italic>J m</italic><sup>&#x02212;3</sup>] was estimated after Simpson et al. (<xref ref-type="bibr" rid="B60">1990</xref>) as</p>
<disp-formula id="E1"><mml:math id="M8"><mml:mrow><mml:mi>P</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow></mml:mfrac><mml:munder><mml:mrow><mml:mover><mml:mo stretchy='true'>&#x0222B;</mml:mo><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow></mml:mover></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn>2</mml:mn></mml:msub></mml:mrow></mml:munder><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi>&#x003C1;</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo>&#x02212;</mml:mo><mml:mi>&#x003C1;</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mi>g</mml:mi><mml:mi>z</mml:mi><mml:mi>d</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>&#x003C1;</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow></mml:mfrac><mml:munder><mml:mrow><mml:mover><mml:mo stretchy='true'>&#x0222B;</mml:mo><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow></mml:mover></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn>2</mml:mn></mml:msub></mml:mrow></mml:munder><mml:mi>&#x003C1;</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mi>d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></disp-formula>
<p>where &#x003C1;(<italic>z</italic>) is the density profile in the water layer between the depths <italic>h</italic><sub>1</sub> and <italic>h</italic><sub>2</sub>. The obtained estimates of <italic>P</italic> characterize the strength of stratification between the depth of 40 m (<italic>h</italic><sub>2</sub>) where nutrients were always available and the ferrybox sampling depth of 4 m (<italic>h</italic><sub>1</sub>). The pre-processed CTD-profiles with a depth step of 0.5 m acquired at station AP5 were used.</p>
<p>All correlations between the data series are given as Pearson correlation coefficients. Only significant correlations are referred with a <italic>p</italic>-value &#x0003C; 0.05.</p>
<p>The consumption rate of phosphates was estimated as suggested by Lips et al. (<xref ref-type="bibr" rid="B43">2014</xref>) assuming that the temporal changes in phosphate concentrations, using a large enough number of analyses over the entire transect, were mostly related to the consumption. A linear regression equation between the measured phosphate concentrations and date (day of the year) was found for each post-spring bloom period using the least squares method. The slope of the found regression line was taken as the estimate of the consumption rate of <inline-formula><mml:math id="M9"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> (units &#x003BC;M day<sup>&#x02212;1</sup>). The related need for <inline-formula><mml:math id="M10"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M11"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was calculated according to the Redfield ratio (N:P ratio 16:1).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>Inter-annual changes in sea surface temperature and salinity</title>
<p>The Gulf of Finland was partially ice-covered in 2009 and 2014, and ice-covered in 2010, 2011, and 2012; however, in 2012 the ice winter was 2 weeks shorter than on average. The spring warming of the surface layer differed in timing and rate of temperature increase in the studied years (Figure <xref ref-type="fig" rid="F2">2</xref>). The earliest warming was observed in 2014 when the average cross-gulf surface layer temperature exceeded 4&#x000B0;C by 21 April and 5&#x000B0;C 1 week later (see Figure <xref ref-type="fig" rid="F2">2</xref>, where relevant dates are marked with vertical red and black lines). The average cross-gulf surface layer temperature exceeded 4 and 5&#x000B0;C a few days earlier in 2009 compared with 2012 (Table <xref ref-type="table" rid="T2">2</xref>). The warming of the surface layer in 2010 and 2011 was slower compared with other years, and spring 2011 was characterized by several warming-cooling periods in April-May. Due to several cooling periods in spring 2011, the average cross-gulf temperature stayed around 4&#x000B0;C until 21 May.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>The temporal variation of horizontal distribution of temperature and salinity in the surface layer along the cross-gulf section in the Gulf of Finland in 2009&#x02013;2012 and 2014. Data of daily measurements with a spatial resolution of 160 m are used. Distance from the southern end of the study transect (see Figure <xref ref-type="fig" rid="F1">1</xref>) is plotted on the y-axis. The days when the average cross-gulf temperature exceeded 4&#x000B0;C (red line) and 5&#x000B0;C (black line) are indicated.</p></caption>
<graphic xlink:href="fmars-04-00407-g0002.tif"/>
</fig>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>The warming of the surface layer: dates (Julian day) when the certain average cross-gulf temperature was reached and dates when maximum <italic>M. rubrum</italic> biomass was observed.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th/>
<th valign="top" align="center"><bold>2009</bold></th>
<th valign="top" align="center"><bold>2010</bold></th>
<th valign="top" align="center"><bold>2011</bold></th>
<th valign="top" align="center"><bold>2012</bold></th>
<th valign="top" align="center"><bold>2014</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">&#x02265;4&#x000B0;C</td>
<td valign="top" align="center">27.04 (117)</td>
<td valign="top" align="center">03.05 (123)</td>
<td valign="top" align="center">15.05<xref ref-type="table-fn" rid="TN1"><sup>&#x0002A;</sup></xref> (135)</td>
<td valign="top" align="center">28.04 (119)</td>
<td valign="top" align="center">21.04 (111)</td>
</tr>
<tr>
<td valign="top" align="left">&#x02265;5&#x000B0;C</td>
<td valign="top" align="center">03.05 (123)</td>
<td valign="top" align="center">12.05 (132)</td>
<td valign="top" align="center">21.05<xref ref-type="table-fn" rid="TN2"><sup>&#x0002A;&#x0002A;</sup></xref> (141)</td>
<td valign="top" align="center">05.05 (126)</td>
<td valign="top" align="center">28.04 (118)</td>
</tr>
<tr>
<td valign="top" align="left">&#x02265;6&#x000B0;C</td>
<td valign="top" align="center">12.05 (132)</td>
<td valign="top" align="center">16.05 (136)</td>
<td valign="top" align="center">25.05<xref ref-type="table-fn" rid="TN2"><sup>&#x0002A;&#x0002A;</sup></xref> (145)</td>
<td valign="top" align="center">09.05 (130)</td>
<td valign="top" align="center">14.05 (134)</td>
</tr>
<tr>
<td valign="top" align="left">&#x02265;10&#x000B0;C</td>
<td valign="top" align="center">30.05 (150)</td>
<td valign="top" align="center">07.06 (158)</td>
<td valign="top" align="center">07.06 (158)</td>
<td valign="top" align="center">27.05 (148)</td>
<td valign="top" align="center">24.05 (144)</td>
</tr>
<tr>
<td valign="top" align="left">Max <italic>MR</italic> BM</td>
<td valign="top" align="center">17.05 (137)</td>
<td valign="top" align="center">14.06 (165)</td>
<td valign="top" align="center">01.06 (152)</td>
<td valign="top" align="center">01.05 (122)</td>
<td valign="top" align="center">15.05 (135)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN1">
<label>&#x0002A;</label>
<p><italic>First warming was registered on 27.04., after that, several colder periods with water temperature around 4&#x000B0;C were registered</italic>.</p></fn>
<fn id="TN2">
<label>&#x0002A;&#x0002A;</label>
<p><italic>Warming over 5&#x000B0;C registered on 08.-12.05.2011 was followed by lower water temperatures until 21.05.2011</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>The surface layer salinity (Figure <xref ref-type="fig" rid="F2">2</xref>) in spring-early summer differed between the years, indicating the complex wind-driven circulation patterns and mixing in the Gulf of Finland surface layer in the studied years. On average, the lowest surface layer salinity was registered in 2009 and the highest in 2011. Most probably the high surface layer salinity in 2010 and 2011 was caused by intense vertical mixing in winters 2009&#x02013;2010 and 2010&#x02013;2011, respectively. For instance, in winter 2010&#x02013;2011, there occurred two longer periods with westerly-southwesterly winds resulting in estuarine circulation reversals (eastward flow in the surface layer and westward flow in the deeper layers) that led to intense vertical mixing and a temporal collapse of vertical stratification (Liblik et al., <xref ref-type="bibr" rid="B39">2013</xref>). The latter could also influence the concentrations of nutrients in the surface layer at the onset of the spring bloom.</p>
<p>A typical north-south gradient of the surface layer salinity (on average, salinity is higher near the Estonian coast than near the Finnish coast; e.g., (Kikas and Lips, <xref ref-type="bibr" rid="B31">2016</xref>) was well seen in spring 2009. In spring 2012, a water tongue with slightly lower salinity occurred in the central part of the Gulf. The horizontal distribution of salinity was uniform across the Gulf in March-April-May 2014, while slightly less saline waters appeared in the northern Gulf in June 2014 and the ordinary north-south salinity gradient was established.</p>
<p>Vertical stratification of the water column at low temperatures in April&#x02013;early May is mostly controlled by the vertical distribution of salinity. The strongest stratification in the upper 40 m layer at station AP5 until mid-May was found in 2010 and 2012 (Figure <xref ref-type="fig" rid="F3">3</xref>) with stratification parameter varying from 32.5 to 45.7 J m<sup>&#x02212;3</sup> and from 34.5 to 46.9 J m<sup>&#x02212;3</sup>, respectively. At the same time, the stratification was weak in April&#x02013;early May both in 2011 and 2014. The stratification parameter varied from 12.0 to 22.0 J m<sup>&#x02212;3</sup> in 2011 and from 12.4 to 24.6 J m<sup>&#x02212;3</sup> in 2014, although the surface layer salinity was clearly higher in 2011 than in 2014. In all studied years, vertical stratification strengthened in late May&#x02013;June due to the formation of the seasonal thermocline. Vertical stratification in June was still stronger in 2010 and 2012 (stratification parameter exceeded 70 J m<sup>&#x02212;3</sup>) than in 2011 and 2014, but a change from a weak to strong stratification was also clear at the measurement site in June 2014 with the estimated stratification parameter up to 55.4 J m<sup>&#x02212;3</sup> in late June.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>The temporal variation of vertical distribution of density and inorganic nutrients at station AP5 in 2010&#x02013;2012 and 2014. The sampling days are indicated with vertical lines, and sampling depths are shown as white circles.</p></caption>
<graphic xlink:href="fmars-04-00407-g0003.tif"/>
</fig>
</sec>
<sec>
<title>Inter-annual changes in inorganic nutrient concentrations</title>
<p>Sampling for the analysis of inorganic nutrient concentrations started in the second week of April (during the phytoplankton spring bloom and was usually performed until the end of May-beginning of June when the <inline-formula><mml:math id="M12"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M13"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations were below or close to the detection limit (Figure <xref ref-type="fig" rid="F4">4</xref>). In April, during the development of phytoplankton spring bloom, the <inline-formula><mml:math id="M14"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M15"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations decreased weekly in all studied years. The highest initial <inline-formula><mml:math id="M16"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M17"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations were measured in 2011 among the all five spring periods. The <inline-formula><mml:math id="M18"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M19"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations were below or close to the detection limit by the 24 April in 2014, by the 2 May in 2011 and by the 7 May in 2012. In 2009 and 2010, the concentrations of <inline-formula><mml:math id="M20"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M21"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> fell close to detection limit by 10 May (except in the southern part of the study transect in 2010). A late spring increase in the surface layer <inline-formula><mml:math id="M22"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M23"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration was detected in 2010 and 2011.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>The temporal variation of the horizontal distribution of inorganic nutrients in the surface layer along the cross-gulf section in the Gulf of Finland in 2009-2012 and 2014. Sampling sites are indicated as white circles on left panels. The open circles on right panels indicate the distribution and intensity of <italic>M. rubrum</italic> biomass (&#x003BC;gC l<sup>&#x02212;1</sup>; smallest circle &#x0003D; 0 &#x003BC;gC l<sup>&#x02212;1</sup>; biggest &#x0003D; 510 &#x003BC;gC l<sup>&#x02212;1</sup>).</p></caption>
<graphic xlink:href="fmars-04-00407-g0004.tif"/>
</fig>
<p>The measurements of <inline-formula><mml:math id="M24"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M25"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations at station AP5 in 2010&#x02013;2012 and 2014 (Figure <xref ref-type="fig" rid="F3">3</xref>) were conducted during the same period as sampling along the ferry route, and the analysis results allow following the depletion of inorganic nitrogen in the surface and sub-surface layer and deepening of the nitracline with time. By mid-April in 2010, the <inline-formula><mml:math id="M26"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M27"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations in the upper 10 m layer were in the range of 0.2&#x02013;0.4 &#x003BC;M whereas high levels were measured at the depths of 15 and 20 m (1.6 and 6.8 &#x003BC;M respectively). A significant deepening of the nitracline was observed at the beginning of May, and higher concentrations were reintroduced to the upper layer due to the rise of the pycnocline at the end of May (Figure <xref ref-type="fig" rid="F3">3</xref>). In 2011, the upper 10 m layer was depleted of <inline-formula><mml:math id="M28"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M29"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> by the start of sampling on 21 April whereas relatively high concentrations were measured at a depth of 15 and 20 m (0.7 and 1.9 &#x003BC;M respectively). The sharp deepening of the nitracline down to 25 m was observed at the beginning of May, and a similar rise of the pycnocline, as it was registered in 2010, took place by 18 May. Due to this process, higher <inline-formula><mml:math id="M30"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M31"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations were detected in the upper layer again in both years. The subsequent samplings in 2011 were conducted with an &#x0007E;2-week time lag, and probably the <inline-formula><mml:math id="M32"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M33"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> were depleted faster than seen from the interpolated field in Figure <xref ref-type="fig" rid="F3">3</xref>. In 2012, the deepening of the nitracline was observed from the beginning of May, and no significant rise in <inline-formula><mml:math id="M34"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M35"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations was detected in the second half of May at station AP5; instead, the continuous deepening of the nitracline down to 25&#x02013;30 m was observed. In 2014, the <inline-formula><mml:math id="M36"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M37"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> were depleted down to the 25 m depth and, like in 2012, no significant rise in nitracline depth was revealed after the spring bloom.</p>
<p>After the depletion of <inline-formula><mml:math id="M38"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M39"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, there was always some <inline-formula><mml:math id="M40"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> left in the surface layer (Figure <xref ref-type="fig" rid="F4">4</xref>) and the concentrations of excess <inline-formula><mml:math id="M41"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> were quite different in the studied years. In 2009 and 2012, the average concentrations were 0.13 &#x003BC;M (in the range of 0.12&#x02013;0.16 &#x003BC;M) and 0.18 &#x003BC;M (in the range of 0.08&#x02013;0.24 &#x003BC;M), respectively. For the same period, the concentrations of <inline-formula><mml:math id="M42"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> were on average 0.33 &#x003BC;M (in the range of 0.20&#x02013;0.42 &#x003BC;M) and 0.37 &#x003BC;M (in the range of 0.23&#x02013;0.48 &#x003BC;M) in 2010 and 2014 respectively, and 0.76 &#x003BC;M (in the range of 0.44&#x02013;0.97 &#x003BC;M) in 2011. The observed late spring rise of the pycnocline increased the surface layer <inline-formula><mml:math id="M43"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentrations in 2010 and 2011 remarkably (Figures <xref ref-type="fig" rid="F3">3</xref>, <xref ref-type="fig" rid="F4">4</xref>).</p>
</sec>
<sec>
<title>Consumption of inorganic nutrients in May&#x02013;June</title>
<p>The <inline-formula><mml:math id="M44"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was depleted in the surface layer by 31 May in 2009, an increase in concentration in the surface layer was observed in mid-June, and the <inline-formula><mml:math id="M45"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was depleted again by the end of the month. In 2010, the sampling for <inline-formula><mml:math id="M46"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> analysis was performed until 14 June, and there was still on average 0.16 &#x003BC;M <inline-formula><mml:math id="M47"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> left (range of 0.11&#x02013;0.24 &#x003BC;M) in the surface layer. In 2011, the sampling period for nutrient analysis was shorter compared with other years in this study, but by 1 June, there was still on average 0.42 &#x003BC;M <inline-formula><mml:math id="M48"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> left (range of 0.30&#x02013;0.56 &#x003BC;M) in the surface layer along the cross-gulf study transect. In 2012, the sampling of nutrients was conducted until 7 June, and by that time, the phosphate concentrations in the surface layer were close to the detection limit. In 2014, nutrients were sampled until 25 June, and <inline-formula><mml:math id="M49"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> levels were below detection limit by 10 June.</p>
<p>According to the availability of <inline-formula><mml:math id="M50"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the surface layer after the depletion of <inline-formula><mml:math id="M51"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M52"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, the consumption of surplus <inline-formula><mml:math id="M53"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was estimated (Table <xref ref-type="table" rid="T3">3</xref>). The consumption rates of <inline-formula><mml:math id="M54"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> were estimated for the following periods: from 10 May until 31 May in 2009 (days 130&#x02013;151), from 10 May until 14 June in 2010 (days 130&#x02013;165), from 2 May until 1 June in 2011 (days 122&#x02013;152), from 7 May until 7 June in 2012 (days 129&#x02013;160), and from 4 May until 25 June in 2014 (days 125&#x02013;146). The consumption of <inline-formula><mml:math id="M55"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> within these periods was much lower compared with the consumption during the antedate phytoplankton spring bloom (data not presented). Relatively low consumption of <inline-formula><mml:math id="M56"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the post-spring bloom period was found in 2009 and 2012, and the estimates were significantly higher in 2010, 2011, and 2014. The probable consumption/need of <inline-formula><mml:math id="M57"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M58"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, assuming that nutrients were consumed according to the N:P ratio of 16:1, was also estimated. Higher inorganic nitrogen needs to deplete surplus <inline-formula><mml:math id="M59"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> from the surface layer were found in 2010, 2011, and 2014 compared with 2009 and 2012. The statistically significant relationship between the decrease of <inline-formula><mml:math id="M60"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> and an increase of <italic>M. rubrum</italic> biomass in the surface layer was found (<italic>R</italic> &#x0003D; 0.70, <italic>p</italic> &#x0003C; 0.01, <italic>n</italic> &#x0003D; 27) for all springs except the year 2010.</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p>Estimated consumption rates of <inline-formula><mml:math id="M61"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> after the depletion of nitrites-nitrates in the surface layer (<italic>n</italic> &#x0003D; number of observations and <italic>R</italic> &#x0003D; correlation coefficient; for all series <italic>p</italic> &#x0003C; 0.01), standard errors of the estimates se<sub>b</sub>, and calculated potential need for <inline-formula><mml:math id="M62"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M63"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> to consume the observed excess <inline-formula><mml:math id="M64"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> according to the N:P ratio of 16:1.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th/>
<th valign="top" align="center"><bold>2009</bold></th>
<th valign="top" align="center"><bold>2010</bold></th>
<th valign="top" align="center"><bold>2011</bold></th>
<th valign="top" align="center"><bold>2012</bold></th>
<th valign="top" align="center"><bold>2014</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">consumption of <inline-formula><mml:math id="M65"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>&#x003BC;M day<sup>&#x02212;1</sup></td>
<td valign="top" align="center">&#x02212;0.004 (<italic>n</italic> &#x0003D; 68; <italic>R</italic> &#x0003D; 0.79)</td>
<td valign="top" align="center">&#x02212;0.007 (<italic>n</italic> &#x0003D; 93; <italic>R</italic> &#x0003D; 0.79)</td>
<td valign="top" align="center">&#x02212;0.007 (<italic>n</italic> &#x0003D; 83; <italic>R</italic> &#x0003D; 0.39)</td>
<td valign="top" align="center">&#x02212;0.005 (<italic>n</italic> &#x0003D; 47; <italic>R</italic> &#x0003D; 0.69)</td>
<td valign="top" align="center">&#x02212;0.007 (<italic>n</italic> &#x0003D; 43; <italic>R</italic> &#x0003D; 0.83)</td>
</tr>
<tr>
<td valign="top" align="left">se<sub>b</sub> &#x003BC;M day<sup>&#x02212;1</sup></td>
<td valign="top" align="center">0.0003</td>
<td valign="top" align="center">0.0006</td>
<td valign="top" align="center">0.002</td>
<td valign="top" align="center">0.0007</td>
<td valign="top" align="center">0.0008</td>
</tr>
<tr>
<td valign="top" align="left">need for <inline-formula><mml:math id="M66"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M67"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">&#x003BC;M day<sup>&#x02212;1</sup>/ &#x003BC;M</td>
<td valign="top" align="center">0.064<break/>1.28</td>
<td valign="top" align="center">0.112<break/>4.0</td>
<td valign="top" align="center">0.112<break/>2.56</td>
<td valign="top" align="center">0.080<break/>1.44</td>
<td valign="top" align="center">0.112<break/>3.52</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec>
<title>Interannual changes in <italic>Mesodinium rubrum</italic> biomass in May&#x02013;June</title>
<p>The ciliate <italic>M. rubrum</italic> was an important primary producer in all studied years during the late phase or post-spring bloom (dominated by diatoms and dinoflagellates) period in the Gulf of Finland. In April, during the spring bloom peak, its average contribution to the photosynthetic plankton community was low, on average 8% (<italic>n</italic> &#x0003D; 213) in all studied years, being the lowest in 2011 when it stayed around 4% (<italic>n</italic> &#x0003D; 50). The average contribution of <italic>M. rubrum</italic> to the photosynthetic plankton community in the sea area between Tallinn and Helsinki in May was very variable in studied years. The lowest contribution in 2010 and 2011 (11&#x02013;13% with <italic>n</italic> &#x0003D; 51 and <italic>n</italic> &#x0003D; 66, respectively) and the highest in 2009 and 2014 (53&#x02013;61% with <italic>n</italic> &#x0003D; 81 and <italic>n</italic> &#x0003D; 44, respectively) were registered. The average contribution to the photosynthetic plankton biomass in May 2012 was 28% (<italic>n</italic> &#x0003D; 48). Even the <italic>M. rubrum</italic> biomass seemed modest in spring-summer 2010 its proportion in the overall phytoplankton community was similar to the year 2012&#x02014;on average 32% if the period from the beginning of May until the end of June was taken into account.</p>
<p>The most significant differences between the years were in the timing of the maximum contribution of <italic>M. rubrum</italic>. The highest proportion in the photosynthetic plankton community measured in May was in 2009 (81%, <italic>n</italic> &#x0003D; 85), 2012 (72%, <italic>n</italic> &#x0003D; 48), and 2014 (86%, <italic>n</italic> &#x0003D; 44). The highest contributions in June were observed in 2010 (97%, <italic>n</italic> &#x0003D; 99), 2011 (91%, <italic>n</italic> &#x0003D; 27), and 2014 (86%, <italic>n</italic> &#x0003D; 33). In addition, the remarkable differences in biomass and distribution of <italic>M. rubrum</italic> were observed (Figure <xref ref-type="fig" rid="F4">4</xref>). The most intensive blooms, distributed quite evenly across the Gulf, were registered in 2009 and 2014 when very high biomass values were measured at the first half of May &#x02013; on 10 and 17 May (91&#x02013;457 and 106.6&#x02013;510.1 &#x003BC;gC l<sup>&#x02212;1</sup>, respectively) in 2009 and on 15 May (136&#x02013;439 &#x003BC;gC l<sup>&#x02212;1</sup>) in 2014. The year 2014 is characterized by a longer period with high biomass values of <italic>M. rubrum</italic> either along the entire cross-gulf transect or in the different parts of it (28 April until 4 June, Figure <xref ref-type="fig" rid="F4">4</xref>). High values of <italic>M. rubrum</italic> biomass were also detected in 2011 and 2012 but the cross-gulf distribution was patchy and the intensive bloom period shorter with biomasses over 300 &#x003BC;gC l<sup>&#x02212;1</sup> only at one sampling date, on 22 May in 2011 (9.5&#x02013;508 &#x003BC;gC l<sup>&#x02212;1</sup>) and on 1 May in 2012 (24.2&#x02013;479.4 &#x003BC;gC l<sup>&#x02212;1</sup>). Remarkably lower <italic>M. rubrum</italic> biomass values were observed in May&#x02013;June 2010 when the highest values were measured a month later, compared with the other studied years, on 14 June (76&#x02013;276 &#x003BC;gC l<sup>&#x02212;1</sup>).</p>
<p>A significant relationship (<italic>R</italic> &#x0003D; 0.60, <italic>p</italic> &#x0003C; 0.01, <italic>n</italic> &#x0003D; 22) was found between the start (a week with a noticeable increase in biomass compared with the previous sampling) of the <italic>M. rubrum</italic> bloom and warming of the sea surface layer. The clear increase in <italic>M. rubrum</italic> biomass was observed after the cross-gulf average surface layer temperature had reached over 4&#x000B0;C (Figure <xref ref-type="fig" rid="F5">5</xref>). The maximum <italic>M. rubrum</italic> biomass was higher and established earlier in warmer springs (2009 and 2014; Table <xref ref-type="table" rid="T2">2</xref>). Also, the average cross-gulf biomass of <italic>M. rubrum</italic> in May was greater in the years characterized by earlier surface layer warming (2009&#x02013;155 &#x003BC;gC l<sup>&#x02212;1</sup>, 2012&#x02013;119 &#x003BC;gC l<sup>&#x02212;1</sup>, and 2014&#x02013;193 &#x003BC;gC l<sup>&#x02212;1</sup>). Springs with slower surface layer warming or very dynamic temperature pattern were characterized by lower <italic>M. rubrum</italic> average biomass in May (2010&#x02013;51 &#x003BC;gC l<sup>&#x02212;1</sup> and 2011&#x02013;62 &#x003BC;gC l<sup>&#x02212;1</sup>).</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><italic>Mesodinium rubrum</italic> biomass increase up to maximum concentration observed in relation to the average cross-gulf surface layer temperature. Color-coded vertical lines mark the days in different years when average surface layer temperature rose over 4&#x000B0;C (upper panel) and 5&#x000B0;C (lower panel).</p></caption>
<graphic xlink:href="fmars-04-00407-g0005.tif"/>
</fig>
<p>A moderate relationship was found with average cross-gulf surface layer salinity and <italic>M. rubrum</italic> biomass build up (<italic>R</italic> &#x0003D; 0.40, <italic>p</italic> &#x0003C; 0.05, <italic>n</italic> &#x0003D; 28).</p>
<p>A qualitative relationship between the vertical stratification and bloom outcome could be demonstrated based on the estimated stratification parameter at station AP5 (located at the distance of 22 km north from the southern end of the cross-gulf study transect; Figure <xref ref-type="fig" rid="F3">3</xref>) and <italic>M. rubrum</italic> biomass in the area. The lowest biomass of <italic>M. rubrum</italic> in spring was observed in 2010 when also the vertical stratification was very strong at station AP5. The highest biomass was found in spring 2014, characterized with the weak vertical stratification, and the decline of <italic>M. rubrum</italic> biomass in the southern part of the study transect coincided with the strengthening of stratification at station AP5 in late May 2014. Nevertheless, similar outcomes of the bloom with occasional high biomass of <italic>M. rubrum</italic> were registered in 2011 and 2012, although the vertical stratification differed significantly between these years&#x02014;the stratification parameter varied from 12.0 to 35.6 J m<sup>&#x02212;3</sup> in 2011 and from 26.3 to 51.0 J m<sup>&#x02212;3</sup> (72.1 J m<sup>&#x02212;3</sup> in early July) in 2012.</p>
<p>Moderate but statistically not significant agreement of <italic>M. rubrum</italic> biomass in May with preceding period cryptophyte biomass was found (Figure <xref ref-type="fig" rid="F6">6</xref>). Still, the years with higher cryptophyte biomass in April showed the earlier establishment of the ciliate bloom, except in 2011 when the surface layer temperature was very variable in April. In addition, the decline of the <italic>M. rubrum</italic> bloom corresponds with the development of <italic>Dinophysis acuminata</italic> (Clapar&#x000E8;de and Lachmann 1859) biomass increase in June (Figure <xref ref-type="fig" rid="F6">6</xref>; <italic>R</italic> &#x0003D; 0.51, <italic>p</italic> &#x0003C; 0.05, <italic>n</italic> &#x0003D; 23).</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p><italic>Mesodinium rubrum</italic> (MR), cryptomonads (CRY), and <italic>Dinophysis acuminata</italic> (DA) biomass dynamics in different years (a&#x02212;2009, b&#x02212;2010, c&#x02212;2011, d&#x02212;2012, e&#x02212;2014). The number of the week is shown on the x-axis.</p></caption>
<graphic xlink:href="fmars-04-00407-g0006.tif"/>
</fig>
</sec>
<sec>
<title>Diel vertical dynamics in <italic>Mesodinium rubrum</italic> abundance in spring 2014</title>
<p>On 21&#x02013;22 May 2014, the 24 h measurement and sampling campaign was performed at station AP5. By this time, the water temperature in the upper 5 m layer was above 7&#x000B0;C (Figure <xref ref-type="fig" rid="F7">7</xref>). The surface layer salinity was about 5.45 g kg<sup>&#x02212;1</sup>, and a clear vertical salinity gradient was observed in the sub-surface layer below 20 m depth. The <inline-formula><mml:math id="M68"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M69"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was depleted down to 20 m depth, but there was still some <inline-formula><mml:math id="M70"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> left in the surface layer (Figure <xref ref-type="fig" rid="F7">7</xref>).</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Temporal changes in vertical distribution of temperature (&#x000B0;C), salinity (g kg<sup>&#x02212;1</sup>), chlorophyll <italic>a</italic> (&#x003BC; l<sup>&#x02212;1</sup>) and dissolved oxygen (mg l<sup>&#x02212;1</sup>; left panels) measured at station AP5 during the 24 h experiment (2 h interval) on 20&#x02013;21 May 2014. Temporal changes in vertical distribution of nutrients (nitrites-nitrates and phosphates; &#x003BC;M), <italic>M. rubrum</italic> abundance (units l<sup>&#x02212;1</sup>) and biomass (&#x003BC; l<sup>&#x02212;1</sup>; right panels) sampled at 6 and 2 h intervals respectively at station AP5; sampling depths are indicated as white circles.</p></caption>
<graphic xlink:href="fmars-04-00407-g0007.tif"/>
</fig>
<p>Phytoplankton sampling at 2 h intervals and 5 m vertical resolution allowed following the vertical displacement of <italic>M. rubrum</italic> cells (Figure <xref ref-type="fig" rid="F7">7</xref>). Although the highest abundances were usually obtained from the 1 m depth, the clear increase in abundance in the sub-surface layers can be observed at night. Cells started to descend after 7 p.m. (local time) and maximum abundances at 25&#x02013;30 m depth were registered in the early morning between 1 and 7 a.m. Most of the descending cells did not migrate deeper than 20 m depth, where the start of nitracline was located. By 11 a.m. next day, the cells were again mainly concentrated in the upper 15 m layer.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>The biomass of the photosynthetic ciliate <italic>M. rubrum</italic> had an evident influence on the primary production of plankton community and nutrient cycling. The inorganic nitrogen, accumulated in the upper layer in the Gulf of Finland during winter, is consumed on average by the beginning of May (Figure <xref ref-type="fig" rid="F4">4</xref>) by rapidly growing spring bloom diatoms and dinoflagellates (Lips et al., <xref ref-type="bibr" rid="B43">2014</xref>). Due to the low N:P ratio in the winter pool of nutrients and nutrients in the sub-surface layer after the formation of stratification, vertical mixing, and/or advection introduces <inline-formula><mml:math id="M71"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> into surface layer always in excess compared with nitrogen (Laanemets et al., <xref ref-type="bibr" rid="B36">2011</xref>). The depletion of excess <inline-formula><mml:math id="M72"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the surface layer before the increase of biomass of N-fixing cyanobacteria (at the end of June-beginning of July) was recognized in the present study.</p>
<p>The depletion of surplus <inline-formula><mml:math id="M73"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> would need significant amounts of inorganic nitrogen which is depleted from the surface layer after the spring bloom. It is possible to roughly estimate the potential need for inorganic nitrogen (Table <xref ref-type="table" rid="T3">3</xref>) and to predict biomass increase of photosynthetic plankton according to the Redfield ratio (C:N:P of 106:16:1) based on the available <inline-formula><mml:math id="M74"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the surface layer and neglecting the remineralization process and consumption by bacteria. For example, the predicted increase in photosynthetic biomass in the surface layer for the period from 3 May to 17 May 2009 (after the depletion of <inline-formula><mml:math id="M75"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M76"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the surface layer; days 122&#x02013;136) could be &#x0007E;100 &#x003BC;gC l<sup>&#x02212;1</sup> taking into account the average concentration of available <inline-formula><mml:math id="M77"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> (0.08 &#x003BC;M). The real measured biomass increase in photosynthetic plankton (including ciliate <italic>M. rubrum</italic>) was on average 42% higher. This discrepancy can be explained either by the fact that net community production may be underestimated if it is based on nutrient concentrations and Redfield ratios only because the contributions of recycled nutrients cannot be taken into account (Thomas et al., <xref ref-type="bibr" rid="B67">1999</xref>) or there are other potential nutrient sources unnoticed when sampling only from the surface layer. In the present study, during the selected period, the shift to species able to migrate vertically in the stratified water column, took place. In fact, the main biomass increase was formed by phototrophic ciliate <italic>M. rubrum</italic>&#x02014;the biomass increased more than two times from an average 95&#x02013;220 &#x003BC;gC l<sup>&#x02212;1</sup> in the study area. During the first week (3&#x02013;10 May), the total biomass of phytoplankton increased only by 50 &#x003BC;gC l<sup>&#x02212;1</sup> while the biomass of <italic>M. rubrum</italic> increased at the same time by 120 &#x003BC;gC l<sup>&#x02212;1</sup> (the difference is due to the disappearance of spring bloom species from the community after the inorganic nitrogen depletion from the surface layer). Within the next week (10&#x02013;17 May), the average increase in total biomass of phototrophic plankton was 130 &#x003BC;gC l<sup>&#x02212;1</sup>, whereas, on average 100 &#x003BC;gC l<sup>&#x02212;1</sup> was due to the increase of biomass of <italic>M. rubrum</italic>. The estimated consumption rate of <inline-formula><mml:math id="M78"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the surface layer would have supported the total photosynthetic biomass increase approximately by 65 and 40 &#x003BC;gC l<sup>&#x02212;1</sup> only, respectively for these 2 weeks. Hence, the observed biomass increase in the whole period of 3&#x02013;17 May was suggested to be mainly established due to the change in the photosynthetic plankton community composition and the ability of particular species to migrate to the sub-surface layers and assimilate nutrients (both nitrates and phosphates) necessary for their growth.</p>
<p>Still, there are other features and mechanisms to be considered. One should note the increase in <inline-formula><mml:math id="M79"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M80"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration in the surface layer by 17 May 2009 (day 136, Figure <xref ref-type="fig" rid="F4">4</xref>). When the measured decrease of <inline-formula><mml:math id="M81"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> in the surface layer for the period of 10&#x02013;17 May was rather low (0.03 &#x003BC;M), the increase in <inline-formula><mml:math id="M82"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M83"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration at the same time was remarkable (0.34 &#x003BC;M) and coincided with the highest <italic>M. rubrum</italic> biomass values measured in spring 2009 in the study area. If to assume that the increase of inorganic nitrogen concentration in the surface layer was induced by the rise of pycnocline, as it was observed in May 2010 and 2011 (Figure <xref ref-type="fig" rid="F3">3</xref>; no vertical profiles available for spring 2009), there should have also been observed the increase in <inline-formula><mml:math id="M84"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration in the surface layer. Instead, the slight decrease in <inline-formula><mml:math id="M85"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration coincided with the increase in <inline-formula><mml:math id="M86"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M87"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration and <italic>M. rubrum</italic> biomass. The first major increase in <italic>M. rubrum</italic> biomass (from 3 to 10 May) was proposed to be mainly related to the species ability to migrate to the lower layers and exploit nutrient reserves there to be able to multiply later in the surface layer. The N-depleted surface layer together with significant biomass increase support this assumption. The second biomass increase (from 10 to 17 May) of <italic>M. rubrum</italic> is most probably a combination of previous and following growth, and advection of water masses with lower salinity into the study area (Figure <xref ref-type="fig" rid="F2">2</xref>), which probably had higher inorganic nitrogen concentration. Hence, high-resolution measurements and sampling enable to see a more comprehensive picture.</p>
<p>Similar calculations were made for May-June 2014, a period when a decrease in <inline-formula><mml:math id="M88"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration in the surface layer during <italic>M. rubrum</italic> bloom was observed. The predicted average biomass increase of primary producers for a period from 22 April to 15 May (&#x0007E;100 &#x003BC;gC l<sup>&#x02212;1</sup>) was also lower than the average real outcome (155 &#x003BC;gC l<sup>&#x02212;1</sup>). It is important to note, that the increase of <italic>M. rubrum</italic> biomass was as high as 4.7 times during the considered period, increasing its contribution to the overall photosynthetic plankton biomass from 15 to 56%. These noticed simultaneous dynamics of nutrients and phototrophic plankton biomass suggest the assimilation of inorganic nutrients (both &#x02013; nitrates and phosphates) in the sub-surface layers and their transport to the surface layer by vertically migrating <italic>M. rubrum</italic>.</p>
<p>The year 2010 was characterized with the lowest maximum biomass of <italic>M. rubrum</italic>. Calculations showed that in the period from 31 May to 14 June, the decrease of <inline-formula><mml:math id="M89"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> by 0.11 &#x003BC;M could have supported the biomass increase according to the Redfield ratio approximately by 140 &#x003BC;gC l<sup>&#x02212;1</sup>, which was slightly lower but still quite close to the measured average biomass increase for this period (159 &#x003BC;gC l<sup>&#x02212;1</sup>). For the same period, the average increase in <italic>M. rubrum</italic> biomass was 100 &#x003BC;gC l<sup>&#x02212;1</sup>, and the contribution of this species to the total phototrophic plankton biomass was increasing within 2 weeks from 50 to 85%. The biomass increase seemed to be mostly based on the <inline-formula><mml:math id="M90"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> left in the surface layer and assimilation of sub-surface <inline-formula><mml:math id="M91"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>&#x0002B;</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M92"><mml:msubsup><mml:mrow><mml:mtext>NO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> after the rise of nitracline at the second half of May (Figure <xref ref-type="fig" rid="F3">3</xref>).</p>
<p>These kind of calculations, without taking into account all possible sources and sinks of inorganic nutrients, are very rough. In addition, dynamic mesoscale features on the background of meteorologically forced transport and mixing (as intensive horizontal flows of water masses with different salinity and/or nutrient concentration to or through the study area) make these simplified calculations/assessments complicated. At the same time, the decrease in the surface layer <inline-formula><mml:math id="M93"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> concentration in spring is very often significantly associated with the <italic>M. rubrum</italic> biomass increase and dominance in the community. Hence, the contribution of this species to the dynamics of inorganic nutrients cannot be neglected. The biomass of photosynthetic plankton in the second half of May was dominated by <italic>M. rubrum</italic> (70%) in all studied years. As the main increase in total photosynthetic plankton biomass was due to the growth of this species, the significant amounts of available inorganic nutrients (both in horizontal and vertical scale) were consumed most probably by it.</p>
<p>The spring bloom is predominantly regarded as a new production according to the definition of Dugdale and Goering (<xref ref-type="bibr" rid="B10">1967</xref>). After the nitrate depletion and decline of the spring bloom, the primary production in the Baltic Sea is mostly assumed to be based on the availability of regenerated nutrients (e.g., Kivi et al., <xref ref-type="bibr" rid="B32">1993</xref>). Earlier studies (Jimenez and Intriago, <xref ref-type="bibr" rid="B25">1987</xref>; Lindholm and M&#x000F6;rk, <xref ref-type="bibr" rid="B41">1990</xref>and references therein, Crawford and Lindholm, <xref ref-type="bibr" rid="B9">1997</xref>; Lips and Lips, <xref ref-type="bibr" rid="B44">2014</xref>) are supporting the results of the present study about the importance of vertical migration to the nutrient dynamics and autotrophic growth in periods characterized by inorganic nutrient limitation in the surface layer. The remarkable growth of <italic>M. rubrum</italic> and formation of red tides in different seasons are based on new nutrients introduced to the surface layer either by physical processes (rise of the thermocline/pycnocline, advection of surface layer water masses, upwelling) or biological capabilities (vertical migration through pycnoclines). The dominance of photosynthetic ciliate <italic>M. rubrum</italic> after the spring bloom not only increases the retention time of newly produced material in the nutrient-limited euphotic layer (Lips et al., <xref ref-type="bibr" rid="B43">2014</xref>) but its contribution to the overall photosynthetic community and primary production can be outstanding. Lepp&#x000E4;nen and Bruun (<xref ref-type="bibr" rid="B38">1986</xref>) estimated that <italic>Mesodinium</italic> contributed about 10% of primary production in spring (April-May) in the open Northern Baltic Proper having at the same time on average only 2% of the total biomass of primary producers. Three decades later the overall contribution of this photosynthetic ciliate to the spring primary producers biomass seems to be increased significantly allowing the estimation on average 8&#x02013;38% of total primary producers for the same period. Hence, 4&#x02013;19 times higher contribution to the spring primary production can be expected, and the even greater contribution due to the overall climate change and an increase in sea surface temperature can be foreseen.</p>
<p>The very dynamic nature of <italic>M. rubrum</italic> blooms in spring would make difficult predictions of impact to the other trophic levels without knowledge of this species ecological preferences. Considering the regulating factors in dynamics of plankton community, limiting factors affecting population growth directly and controlling factors influencing the outcome of growth processes exist (Thingstad and Sakshaug, <xref ref-type="bibr" rid="B66">1990</xref>). Johnson et al. (<xref ref-type="bibr" rid="B28">2013</xref>) have shown a significant positive correlation of <italic>M. rubrum</italic> field population with temperature in spring. Also, Montagnes et al. (<xref ref-type="bibr" rid="B50">2008</xref>) demonstrated a significant effect of temperature on <italic>M. rubrum</italic> abundance; the one-degree increase would increase the mean abundance by 1.42, and explained it with a decreased growth rate at low temperature. The limitation of cellular metabolic capacity by the thermal stress (Moeller et al., <xref ref-type="bibr" rid="B49">2011</xref>) and a decrease in swimming velocity with decreasing temperatures (Riisg&#x000E5;rd and Larsen, <xref ref-type="bibr" rid="B57">2009</xref>) have also been suggested. The motion of <italic>M. rubrum</italic> is characterized by jumping after shorter or longer periods of motionless, but it is also capable of sustained swimming (Fenchel and Hansen, <xref ref-type="bibr" rid="B14">2006</xref>). Besides escape from predators, the jumping is necessary to create fluid motion surrounding the ciliate to increase the contribution of advective transport in nutrient uptake (Jiang, <xref ref-type="bibr" rid="B24">2011</xref>). Slow warming (Figure <xref ref-type="fig" rid="F2">2</xref>, Table <xref ref-type="table" rid="T2">2</xref>) in the study area at the end of April in 2010 probably created a physical environment not supporting the intensive growth and active motions, including the vertical migrations to assimilate nitrates from deeper layers, of <italic>M. rubrum</italic> compared with other studied years. Hence, when migratory capabilities were reduced, the competitive advantages over other migrating photosynthetic plankton were downgraded. The other important factor in combination with the low surface water temperature to influence the growth of <italic>M. rubrum</italic> is the low position of nitracline (below 20 m already by the end of April) in 2010 (Figure <xref ref-type="fig" rid="F3">3</xref>). Although the ability of <italic>M. rubrum</italic> to migrate through the density gradients is well-documented (e.g., Figueroa et al., <xref ref-type="bibr" rid="B15">1998</xref>), the present results suggest that vertical stratification could notably influence the growth and bloom outcome of this species. The latter is also supported by the data from spring 2014. The observed clear decrease of <italic>M. rubrum</italic> biomass in late May 2014 in the southern part of the transect (Figure <xref ref-type="fig" rid="F4">4</xref>) coincided with the strengthening of vertical stratification (Figure <xref ref-type="fig" rid="F3">3</xref>).</p>
<p><italic>M. rubrum</italic> is an obligate phototroph obtaining most of its carbon from photosynthesis, and only one cryptophyte prey per cell is required to maintain its maximum growth (Hansen and Fenchel, <xref ref-type="bibr" rid="B17">2006</xref>). The suitable prey and predator relationships are hypothesized to support the <italic>M. rubrum</italic> surface bloom formation (Stoecker et al., <xref ref-type="bibr" rid="B62">2009</xref>). Cryptophytes-<italic>M. rubrum</italic> relationships can also be followed in the data set of studied years with significant bloom maximum in 2009, 2011&#x02013;2012, and 2014 (Figure <xref ref-type="fig" rid="F6">6</xref>), but the same does not hold for the year 2010 when the initial biomass of cryptophytes was several times lower in April compared with other years. Most probably, the combination of regulating factors (both limiting and controlling) influenced the <italic>M. rubrum</italic> biomass outcome in 2010.</p>
<p>Complex migratory patterns observed in the present study and described by others (e.g., review by (Crawford, <xref ref-type="bibr" rid="B8">1989</xref>) might be related to a combination of requirements for light, cryptophyte prey, and nutrients, especially nitrates. The migrations in response to nutrient and light conditions in the stratified sea can lead to a vertical distribution in which the majority of the population may be concentrated close to the surface during the day and in deeper layers at night. Most commonly, only part of the populations are performing such daily migrations (P&#x000E9;rez et al., <xref ref-type="bibr" rid="B54">1999</xref>; Rychert, <xref ref-type="bibr" rid="B59">2004</xref>), but getting a more realistic picture of the extent of such migrations temporally very high-resolution measurements are needed. The suggested vertical migrations of <italic>M. rubrum</italic> between the surface layer and the nitracline should create incidents when during the high biomass period of this ciliate in the plankton community the Chl <italic>a</italic> concentrations could occasionally be elevated in the sub-surface layer. Sub-surface maxima have been reported earlier in the Gulf of Finland in summer in the cases when the dinoflagellate <italic>Heterocapsa triquetra</italic> (Ehrenberg) Stein 1883 was present in the community in high abundances (Lips et al., <xref ref-type="bibr" rid="B45">2011</xref>; Lips and Lips, <xref ref-type="bibr" rid="B44">2014</xref>). The high-resolution measurements with a profiling mooring and a towed undulating vehicle (data not presented here) registered the sub-surface Chl <italic>a</italic> maxima in spring 2012. During the period of the high biomass of <italic>M. rubrum</italic> in the first half of May, thin layers of relatively high Chl <italic>a</italic> values were observed on several occasions. In the frame of the present study, the vertical sampling conducted at 2 h intervals and resolution of 5 m might have been too low as <italic>M. rubrum</italic> could have theoretically made several migrations within 2 h or was missed in the depths not sampled. Still, the integrated biomass values increased slightly from 21 p.m. until 1 a.m. (240&#x02013;380 &#x003BC;C l<sup>&#x02212;1</sup>) and decreased again afterwards, indicating the high probability of success in sampling during the active migration. The high swimming speed allows <italic>M. rubrum</italic> to descend to the nitracline in the evening, stay there to assimilate nutrients and migrate back to the well-lit surface layer by midday. From the presented 24-h study, the observed migration pattern allows suggesting the diurnal vertical migrations of this species. Still, extensive studies should be made in the future to see the longer pattern and regularity of such migrations and assess more precisely the influence not only to the horizontal but also to the vertical distribution of inorganic nutrients. The ability to migrate vertically and exploit the nutrient pools from the lower layers may significantly influence the nutricline depth after the development of stratification in spring. Interestingly, even the nitracline was located at 20 m depth in May 2014, part of the <italic>M. rubrum</italic> cells migrated deeper&#x02014;down to 25 and 30 m depth.</p>
<p>The photosynthetic ciliate <italic>M. rubrum</italic> might be a key player in the trophic transfer of energy after the decline of spring bloom and establishment of late summer phytoplankton blooms. This phototrophic ciliate not only prolongs the autotrophic production in the nutrient-depleted surface layer but also acts as an important food supply to other organisms (e.g., Park et al., <xref ref-type="bibr" rid="B52">2006</xref>; Fileman et al., <xref ref-type="bibr" rid="B16">2007</xref>; Lee et al., <xref ref-type="bibr" rid="B37">2014</xref>; Figure <xref ref-type="fig" rid="F6">6</xref>). Also, the excretion of nutrients through mineralization and cell explosion can be a significant source of nitrogen (Lindholm, <xref ref-type="bibr" rid="B40">1985</xref>; Miller et al., <xref ref-type="bibr" rid="B48">1995</xref>) to phytoplankton species present in the surface layer community. High nitrate and phosphate assimilation rates reported in previous studies (Dugdale et al., <xref ref-type="bibr" rid="B11">1987</xref>; Jiang, <xref ref-type="bibr" rid="B24">2011</xref>; Tong et al., <xref ref-type="bibr" rid="B68">2015</xref>), support the assumption that inorganic nitrogen available in spring-summer continuum, either brought close to the surface through pycnocline rise or from adjacent areas, will be mostly assimilated by dominating <italic>M. rubrum</italic> if the other environmental conditions support its growth. Also, the dominance of <italic>M. rubrum</italic> in May-June, its migration behavior, and phosphate utilization in the surface layer is strongly influencing the amount of excess <inline-formula><mml:math id="M94"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> that is usually regarded to support the summer cyanobacterial bloom development (e.g., Janssen et al., <xref ref-type="bibr" rid="B23">2004</xref>; Laanemets et al., <xref ref-type="bibr" rid="B35">2006</xref>; Raateoja et al., <xref ref-type="bibr" rid="B56">2011</xref>). The years, when <inline-formula><mml:math id="M95"><mml:msubsup><mml:mrow><mml:mtext>PO</mml:mtext></mml:mrow><mml:mrow><mml:mn>4</mml:mn></mml:mrow><mml:mrow><mml:mn>3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> was depleted or close to the depletion by the end of our study period, are characterized by lower cyanobacterial biomass development and <italic>vice versa</italic> (Kahru and Elmgren, <xref ref-type="bibr" rid="B29">2014</xref>). Hence, the dynamics and intensity of <italic>M. rubrum</italic> blooms in May-June have, besides nutrient distribution, the significant impact also on the late summer phytoplankton communities. The interactions between <italic>M. rubrum</italic> biomass development and other phytoplankton groups should be studied further as its contribution to the total photosynthetic biomass has increased in all seasons in the Baltic Sea (Jaanus et al., <xref ref-type="bibr" rid="B22">2011</xref>). Thamm et al. (<xref ref-type="bibr" rid="B65">2004</xref>) have demonstrated the shift of the peak occurrence of this species from spring (in 1987) over spring/summer (in 1990) to summer (in 1997).</p>
</sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusions</title>
<p>The clear relationship between the start and outcome of the <italic>M. rubrum</italic> bloom and average cross-gulf surface layer temperature emphasize the potentially high impact of this species to the spring&#x02013;early summer plankton community in the background of overall climate change and continuous increase in sea surface temperature. The very high proportion of <italic>M. rubrum</italic> in the phototrophic plankton community has created the shift from, previously acknowledged, regenerated production toward new production at the period between spring bloom and summer cyanobacterial bloom in the Baltic Sea. The dominance of <italic>M. rubrum</italic> after the spring bloom in vertically stratified Gulf of Finland strongly influences the amount of excess phosphates in the surface layer and vertical inorganic nutrient dynamics. Within present study, comprising sampling with high temporal and spatial resolution, the understanding of dynamics and possible impacts of spring <italic>M. rubrum</italic> blooms to the Gulf of Finland ecosystem was increased.</p>
</sec>
<sec id="s6">
<title>Author contributions</title>
<p>UL organized and partly conducted the measurements and sampling in the study area. IL conducted all phytoplankton and partly the nutrient analysis. Both authors contributed to the data analysis and manuscript writing.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack><p>We appreciate the help of crew and colleagues during sampling and analysis.</p>
</ack>
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<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> The present work was supported by institutional research funding IUT (IUT19-6) of the Estonian Ministry of Education and Research, by the Estonian Science Foundation grant no. 8930 and by EU Regional Development Foundation, Environmental Conservation and Environmental Technology R&#x00026;D Programme project VeeOBS (3.2.0802.11-0043).</p>
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