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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2017.00298</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Organisms Composing an Experimental Coral Reef Community from Mo&#x00027;orea, French Polynesia, Exhibit Taxon-Specific Net Production: Net Calcification Ratios</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Lantz</surname> <given-names>Coulson A.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/353731/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Carpenter</surname> <given-names>Robert C.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Comeau</surname> <given-names>Steeve</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/147374/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Edmunds</surname> <given-names>Peter J.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/302139/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>School of Environment, Science, and Engineering, Southern Cross University</institution>, <addr-line>Lismore, NSW</addr-line>, <country>Australia</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Biology, California State University</institution>, <addr-line>Northridge, CA</addr-line>, <country>United States</country></aff>
<aff id="aff3"><sup>3</sup><institution>School of Earth Sciences, Ocean Institute, ARC Centre of Excellence for Coral Reef Studies, The University of Western Australia</institution>, <addr-line>Cawley, WA</addr-line>, <country>Australia</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Hajime Kayanne, The University of Tokyo, Japan</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Takashi Nakamura, Tokyo Institute of Technology, Japan; Juan Pablo Carricart-Ganivet, National Autonomous University of Mexico, Mexico</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Coulson A. Lantz <email>coulsonlantz&#x00040;gmail.com</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Coral Reef Research, a section of the journal Frontiers in Marine Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>28</day>
<month>09</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>298</elocation-id>
<history>
<date date-type="received">
<day>21</day>
<month>03</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>08</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Lantz, Carpenter, Comeau and Edmunds.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Lantz, Carpenter, Comeau and Edmunds</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>Current research on coral reefs seeks to link the responses to anthropogenic stressors (such as global warming and ocean acidification [OA]) among differing functional levels of biological organization. While experimental studies have identified <italic>ex situ</italic> taxon-specific responses to OA and global warming, isolating and connecting these effects <italic>in situ</italic> at the community-level has proved difficult. The difficulties arise from the large number of naturally varying parameters affecting corals reefs, such as light intensity and seawater residence time that affect net community production and calcification. To control variation in seawater residence time and allow light intensity to vary naturally, experimental outer reef (17-m depth) benthic communities composed of calcified algae, corals, and reef pavement were constructed in large outdoor flumes in Mo&#x00027;orea, French Polynesia. Net community production (<italic>P</italic>), net community calcification (<italic>G</italic>), the ratio of <italic>P/G</italic> (<italic>P/G</italic><sub>ratio</sub>), and slope of <italic>P</italic> regressed on <italic>G</italic> (<italic>P/G</italic><sub>slope</sub>) were calculated for the communities, and concurrently for the constituent members under the same temperature, light, and flow conditions. <italic>P</italic> and <italic>G</italic>, for both the communities and constituent members, were correlated positively with light intensity, whereas <italic>P/G</italic><sub>ratio</sub> and <italic>P/G</italic><sub>slope</sub> were unaffected by light intensity. <italic>P/G</italic><sub>ratios</sub> and <italic>P/G</italic><sub>slopes</sub> exhibited values that were specific to each community member. These results suggest that the <italic>P/G</italic><sub>ratio</sub> and <italic>P/G</italic><sub>slope</sub> may be unaffected by natural variability in light intensity and could serve as useful metrics to relate responses at the taxon and community level, which is an important step in assessing the effects of environmental changes on coral reefs.</p></abstract>
<kwd-group>
<kwd>ocean acidification</kwd>
<kwd>coral reef</kwd>
<kwd>calcification</kwd>
<kwd>photosynthesis</kwd>
<kwd>production:calcification ratio</kwd>
</kwd-group>
<contract-num rid="cn001">OCE 14-15268</contract-num>
<contract-sponsor id="cn001">National Science Foundation<named-content content-type="fundref-id">10.13039/100000001</named-content></contract-sponsor>
<counts>
<fig-count count="5"/>
<table-count count="1"/>
<equation-count count="2"/>
<ref-count count="52"/>
<page-count count="9"/>
<word-count count="7317"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>The excess dissolution of anthropogenic CO<sub>2</sub> emissions into the global surface oceans, described as Ocean Acidification (OA), is decreasing surface seawater pH at 0.0017 units y<sup>&#x02212;1</sup> (Clarke et al., <xref ref-type="bibr" rid="B11">2014</xref>), and threatens to impair physiological processes (e.g., calcification) of marine organisms (Gattuso et al., <xref ref-type="bibr" rid="B26">2015</xref>). Anthropogenic CO<sub>2</sub> is also warming the planet, a process referred to as global warming, which is predicted to increase sea surface temperature (SST) 1.2&#x02013;3.2&#x000B0;C by the end of the century (Clarke et al., <xref ref-type="bibr" rid="B11">2014</xref>) and may also decrease calcification in marine organisms (Hoegh-Guldberg et al., <xref ref-type="bibr" rid="B29">2007</xref>). Many studies examining the effects of OA and temperature have focused on coral reefs, as this ecosystem represents the largest concentration of calcifying marine organisms on the planet (Hoegh-Guldberg et al., <xref ref-type="bibr" rid="B29">2007</xref>).</p>
<p>The majority of OA studies have been performed <italic>ex situ</italic> at the cellular (e.g., Cohen and Holcomb, <xref ref-type="bibr" rid="B12">2009</xref>; Venn et al., <xref ref-type="bibr" rid="B48">2013</xref>), organismal (e.g., Ries et al., <xref ref-type="bibr" rid="B42">2009</xref>; Erez et al., <xref ref-type="bibr" rid="B22">2011</xref>), and community scales (e.g., Andersson et al., <xref ref-type="bibr" rid="B4">2009</xref>; Comeau et al., <xref ref-type="bibr" rid="B13">2015</xref>), and have manipulated seawater pCO<sub>2</sub> or pH to simulate future ocean conditions and measured rates of net production (<italic>P</italic>) and net calcification (<italic>G</italic>) as response variables. On average, the response of taxon-specific <italic>G</italic> to OA predict that <italic>G</italic> in tropical marine calcifiers will decrease 14&#x02013;30% by 2100 (Chan and Connolly, <xref ref-type="bibr" rid="B10">2013</xref>; Kroeker et al., <xref ref-type="bibr" rid="B32">2013</xref>), while <italic>P</italic> has been mostly predicted to be unaffected (Schneider and Erez, <xref ref-type="bibr" rid="B43">2006</xref>; Kroeker et al., <xref ref-type="bibr" rid="B32">2013</xref>; Comeau et al., <xref ref-type="bibr" rid="B13">2015</xref>). Likewise, seawater warming studies performed <italic>ex situ</italic> at the organismal scale (e.g., Reynaud et al., <xref ref-type="bibr" rid="B41">2003</xref>; Comeau et al., <xref ref-type="bibr" rid="B14">2016a</xref>) show that <italic>G</italic> and <italic>P</italic> in tropical marine calcifiers is enhanced until a threshold temperature (&#x0007E;28&#x000B0;C in many organisms, but highly site specific; Pratchett et al., <xref ref-type="bibr" rid="B40">2015</xref>) and then dramatically decreases thereafter due, in part, to bleaching or mortality (Hughes et al., <xref ref-type="bibr" rid="B31">2017</xref>). Considering that many tropical reefs currently experience temperatures &#x0003E;28&#x000B0;C during the summer (Atkinson, <xref ref-type="bibr" rid="B5">2011</xref>), there are concerns that even the minimum warming-driven increase in SST of 1.2&#x000B0;C will decrease <italic>G</italic> and <italic>P</italic> in tropical marine calcifiers by the end of this century (Hughes et al., <xref ref-type="bibr" rid="B31">2017</xref>).</p>
<p>In contrast, there is little empirical research testing the effects of OA and global warming on <italic>P</italic> and <italic>G</italic> of a coral reef <italic>in situ</italic> at the community scale. In part, this reflects the difficulties of quantifying and predicting the response of coral reef communities to OA and warming given the logistical challenges of manipulating seawater pCO<sub>2</sub> or temperature over entire coral reefs (but see Albright et al., <xref ref-type="bibr" rid="B1">2016</xref>). Experimental analyses of the effect of OA and warming on coral reef communities therefore are rare, and generally require taxon-specific results to predict changes <italic>in situ</italic> at the community level. In theory, the predicted 14&#x02013;30% decrease in <italic>G</italic> attributed to OA at &#x0007E;800&#x02013;1,000 &#x003BC;atm pCO<sub>2</sub> (as predicted by 2100; Chan and Connolly, <xref ref-type="bibr" rid="B10">2013</xref>) or decline in <italic>P</italic> and <italic>G</italic> as SST rises 1.2&#x02013;3.2&#x000B0;C (Clarke et al., <xref ref-type="bibr" rid="B11">2014</xref>; Comeau et al., <xref ref-type="bibr" rid="B14">2016a</xref>) should be measureable <italic>in situ</italic> on a coral reef given the resolution and precision of contemporary methodologies.</p>
<p>However, these predicted century-scale changes in <italic>P</italic> and <italic>G</italic> due to OA and global warming are small when compared to natural diel variability in <italic>P</italic> and <italic>G</italic>, which amounts to 200&#x02013;300% within a day, due mainly to variation in light intensity (PAR), which modulates <italic>P</italic> and <italic>G</italic> (Falter et al., <xref ref-type="bibr" rid="B24">2008</xref>). Diurnal variability in PAR drives diurnal changes in <italic>P</italic> and <italic>G</italic> that is three-to-four times greater than the predicted decline in <italic>P</italic> and <italic>G</italic> over the next century (Hofmann et al., <xref ref-type="bibr" rid="B30">2011</xref>), and is thought to obscure any OA- or warming-mediated changes in coral reef community <italic>P</italic> and <italic>G</italic> that already have occurred (Atkinson, <xref ref-type="bibr" rid="B5">2011</xref>). As absolute <italic>P</italic> and <italic>G</italic> are dependent on PAR, they are not well-suited to providing benchmark values against which the effects of environmental change on the same processes can be measured.</p>
<p>To address the effects of environmental variability on community metabolism, <italic>P</italic> and <italic>G</italic> can also be expressed as a ratio (<italic>P/G</italic>) that characterizes the relative rates of organic and inorganic metabolism. In the literature, this relationship can be based on the ratio of a single measurement of <italic>P</italic> and <italic>G</italic> (<italic>P/G</italic><sub>ratio</sub>), or a linear regression of <italic>P</italic> on <italic>G</italic>, when multiple measures of each response variable are available (<italic>P/G</italic><sub>slope</sub>). The <italic>P/G</italic><sub>ratio</sub> is useful in tests of the association between singular measurements of the P-G quotient and contemporaneous environmental conditions (e.g., light; Lantz et al., <xref ref-type="bibr" rid="B34">2014</xref>), whereas the <italic>P/G</italic><sub>slope</sub> is valuable in examining relationships between <italic>P</italic> and <italic>G</italic> over the entire day where multiple measurements of <italic>P</italic> and <italic>G</italic> are available (Page et al., <xref ref-type="bibr" rid="B39">2016</xref>). While the experimental and statistical approaches to calculating these two relationships between P and G slightly differs, both approaches express net primary production (<italic>P</italic>) as a function of inorganic carbon flux attributed to calcification and dissolution (<italic>G</italic>) (Suzuki and Kawahata, <xref ref-type="bibr" rid="B47">2003</xref>). Although the physiological mechanisms linking P and G argue for a stronger connection for P driving G (rather than the other way around; Barnes and Chalker, <xref ref-type="bibr" rid="B7">1990</xref>), and it would, therefore, be more appropriate to consider G as a function of P (<italic>G/P</italic>), the majority of the literature expresses this relationship as <italic>P/G</italic> (see Shaw et al., <xref ref-type="bibr" rid="B45">2015</xref>). Consequently, we express the relationship as <italic>P/G</italic> for comparative purposes.</p>
<p>The <italic>P/G</italic> relationship is useful in establishing a benchmark against which change in community function can be measured, because, unlike individual measures of <italic>P</italic> or <italic>G</italic>, the relationship between the two potentially is unaffected by daily variability in PAR (Watanabe et al., <xref ref-type="bibr" rid="B50">2006</xref>). Daily changes in PAR may amplify or depress community <italic>P</italic>, but because the majority of coral reef community <italic>G</italic> is a product of photosynthetic calcifiers (Atkinson and Cuet, <xref ref-type="bibr" rid="B6">2008</xref>), <italic>P</italic> and <italic>G</italic> generally are tightly-coupled so that the ratio of <italic>P/G</italic> is relatively constant over diurnal timescales (Lantz et al., <xref ref-type="bibr" rid="B34">2014</xref>). Therefore, it has been hypothesized that changes in community <italic>P/G</italic> over time reflect variation in biotic parameters, such as community composition (e.g., percent cover of calcifying organisms; Andersson and Gledhill, <xref ref-type="bibr" rid="B3">2013</xref>; Page et al., <xref ref-type="bibr" rid="B39">2016</xref>).</p>
<p>The hypothesis that community composition influences <italic>P/G</italic> on coral reefs relies on the assumption that each taxon within the community (e.g., corals and algae) exhibits a characteristic <italic>P/G</italic> relationship that contributes to the overall community <italic>P/G</italic>. A review of literature found that an average coral reef community exhibited a <italic>P/G</italic><sub>slope</sub> of 4.1 when coral cover was &#x0007E;20% (Shaw et al., <xref ref-type="bibr" rid="B45">2015</xref>), and suggested that a benthic coral reef community with a relatively high percent cover of calcifiers (e.g., corals and calcifying algae &#x0003E;20%), is associated with high rates of <italic>G</italic> (&#x0003E;5 mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) relative to mean <italic>P</italic> (&#x0007E; 20 mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>). In this case, the community may exhibit a <italic>P/G</italic><sub>slope</sub> approaching &#x0007E;2 (e.g., Albright et al., <xref ref-type="bibr" rid="B2">2013</xref>). In contrast, a community with a relatively low cover of calcifiers (&#x0003C; 20%) is predicted to have low rates of <italic>G</italic> (&#x0003C; 5 mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) relative to mean <italic>P</italic> (&#x0007E;20 mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>), and a <italic>P/G</italic><sub>slope</sub> of &#x0007E; 6 (e.g., Lantz et al., <xref ref-type="bibr" rid="B34">2014</xref>; Figure <xref ref-type="fig" rid="F1">1</xref>). However, before <italic>P/G</italic> relationships can be used to make accurate predictions of benthic community function on tropical coral reefs, further work is needed to evaluate if constituent organisms within a coral reef community exhibit taxon-specific <italic>P/G</italic> relationships.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Conceptual diagram representing reef net production (mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) as a function of net calcification (mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) with an average <italic>P/G</italic><sub>slope</sub> of 4.1 (Shaw et al., <xref ref-type="bibr" rid="B45">2015</xref>). Bold arrows represent the slope for the individual processes of photosynthesis, respiration, calcification, and dissolution. Light gray arrows represent the theoretical shift to a <italic>P/G</italic><sub>ratio</sub> &#x0003E;4.1 for a reef with &#x0003E;20% cover of calcifiers. Dark gray arrows represent a shift to a <italic>P/G</italic><sub>ratio</sub> &#x0003C;4.1 for a reef with &#x0003C;20% cover of calcifiers.</p></caption>
<graphic xlink:href="fmars-04-00298-g0001.tif"/>
</fig>
<p>Quantifying <italic>P/G</italic><sub>ratio</sub> or <italic>P/G</italic><sub>slope</sub> for a benthic community and its constituent members requires measurements in an experimental environment where the benthic communities are replicated and controlled over time. Where this can be accomplished, community-member <italic>P/G</italic><sub>ratio</sub> and <italic>P/G</italic><sub>slope</sub> can be calculated at a resolution lower than functional groups (i.e., corals, calcified algae), and potentially by species. To examine how <italic>P/G</italic><sub>ratio</sub> is affected by naturally varying light intensity, and how <italic>P/G</italic><sub>slope</sub> differs among the taxa composing a shallow coral reef community, the present study measured the metabolism of coral reef communities assembled in replicate experimental flumes using a controlled community composition. <italic>P</italic> and <italic>G</italic> were measured in two experimental coral reef communities, and concurrently for each of the constituent taxa of these same communities. Measurements were made during repeated 3-h incubations (09:00&#x02013;12:00 h) over 3-weeks in Mo&#x00027;orea, French Polynesia. Daily measured community- and taxa-level <italic>P</italic> was divided by <italic>G</italic> to derive <italic>P/G</italic><sub>ratio</sub>, and all measurements of community- and taxa-level <italic>P</italic> were regressed linearly against <italic>G</italic> to obtain <italic>P/G</italic><sub>slope</sub>.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Experimental design</title>
<p>This experiment was carried out from September 1 to October 11, 2014, in Mo&#x00027;orea, French Polynesia, at the Richard B. Gump South Pacific Research Station. Coral reef communities were assembled in two replicate flumes (hereafter, Communities 1 and 2), and their composition was adjusted to match the average planar cover measured on the fore reef of Mo&#x00027;orea at 17-m depth in 2006 (Edmunds, <xref ref-type="bibr" rid="B20">2015</xref>). The scleractinian components of the communities were the spatially dominant corals <italic>Pocillopora verrucosa</italic> (11% cover), massive <italic>Porites</italic> spp. (<italic>P. lobata</italic> and <italic>P. lutea</italic>) (8%), and <italic>Acropora retusa</italic> (8%) (Comeau et al., <xref ref-type="bibr" rid="B17">2016b</xref>). In addition, 5% of the floor of the flumes was covered by the crustose coralline algae (CCA) <italic>Porolithon onkodes</italic>, which approximated the cover of this functional group on the fore reef in 2006. Pieces of <italic>P. onkodes</italic>, consisting of &#x0007E; 8 &#x000D7; 8 cm sections (&#x0007E; 3 cm thick), were chiseled from the reef at 17-m depth and placed in the flumes. To recreate the benthic inorganic substratum, 55% of the floor of the flume was covered by reef pavement. Pieces of reef pavement (&#x0007E;20 &#x000D7; 20 cm) consisted of dead coral skeleton fragments naturally covered in turf algae.</p>
<p>The two flumes were located outdoors and each consisted of a working section of 5.0 &#x000D7; 0.3 &#x000D7; 0.3 m, through which seawater was re-circulated using pumps (W. Lim Wave II 31800 L h<sup>&#x02212;1</sup>) to obtain a mean flow speed of 8 cm s<sup>&#x02212;1</sup>, which is similar to the average flow speed on the fore reef of Mo&#x00027;orea at 17-m depth (Washburn and Brooks, <xref ref-type="bibr" rid="B49">2014</xref>). Seawater in the flumes was refreshed continuously at 5 L min<sup>&#x02212;1</sup> with seawater pumped from Cook&#x00027;s Bay at 12-m depth, and filtered through sand (0.45&#x02013;0.55 mm nominal pore size). Clear UV-transparent acrylic covers were placed on top of the flumes to keep out rain, and blue acetate filters (Lee Filters &#x00023;183 Moonlight Blue) were placed on the covers to filter ambient sunlight to simulate the photon flux density of photosynthetically active radiation (PAR, &#x0007E;500&#x02013;1,200 mmol photons m<sup>&#x02212;2</sup> cm<sup>&#x02212;1</sup>; measured with a 2&#x003C0; quantum sensor LI-189 and a LiCor LI-1400 meter) and the spectral composition of light at 17-m depth (CA Lantz unpublished data). Temperature in the flumes was maintained at &#x0007E;27.0&#x000B0;C, which was the ambient seawater temperature on the fore reef at the time of the study. Light was measured at 30-min intervals with a PAR logger (2&#x003C0; Odyssey PAR sensor) in each flume. An average PAR value was calculated for each incubation based on the six PAR measurements taken over the 3-h incubation period.</p>
<p>Community metabolism (<italic>P</italic> and <italic>G</italic> arising from all community members) in each flume was measured from changes in seawater chemistry as determined during replicate 3-h incubations between 9:00 and 12:00 h on 14 days between 1 September and 11 October. With two separate flumes operated in a closed circuit for 3-h sampling periods on 14 days, this created 14 replicated measurements for each flume. To compare the response of <italic>P</italic> and <italic>G</italic> to variation in PAR for the community and the constituent taxa, the metabolism of each of the species comprising the community was measured separately for five benthic groups (<italic>P. verrucosa, Porites</italic> spp. <italic>A. retusa, P. onkodes</italic>, and pavement) using four chambers placed within each flume that were operated simultaneously. The four chambers consisted of a 2-L clear acrylic cylinder enclosed on the bottom and fitted with an individual Atman 340 L h<sup>&#x02212;1</sup> powerhead to create turbulent conditions (Figure <xref ref-type="fig" rid="F2">2</xref>). The top of each chamber (height 30-cm) remained open and above the flume water level to prevent water exchange in order to separate the chemical changes in seawater, but maintain identical temperature and PAR conditions between the chambers and flume. Trials were completed in triplicate for each community member (to provide <italic>n</italic> &#x0003D; 12 for each community member), and community members were randomly selected for each incubation.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Picture of flumes with experimental coral reef communities 1 and 2 in place. Covers with blue filters are not in place so as to show coral reef community within the flume. Inset shows 2-L chamber, containing a <italic>Pocillopora verrucosa</italic> colony and a small pump for seawater circulation, which were placed within the flumes at the time of incubation.</p></caption>
<graphic xlink:href="fmars-04-00298-g0002.tif"/>
</fig>
</sec>
<sec>
<title>Seawater measurements</title>
<p>Seawater samples were taken from each flume and chamber at the beginning and end of each 3-h incubation (09:00&#x02013;12:00 h) and analyzed for temperature, salinity, total alkalinity (TA), and pH. Temperature was measured using a ThermoFisher Scientific Traceable Thermometer (&#x000B1; 0.01&#x000B0;C) and salinity was measured using a conductivity meter (YSI 3100). Measurements of TA were made within 24 h of collection of seawater samples using open-cell potentiometric titrations (Dickson et al., <xref ref-type="bibr" rid="B19">2007</xref>) on a Mettler Toledo T-50 titrator fitted with a DG115 pH electrode, and analyses were completed in duplicate using &#x0007E;50 g seawater samples. Measurements of pH were performed using a spectrophotometric procedure with m-cresol dye, and calculated on the Total Scale (pH<sub>T</sub>). Titrations of certified reference materials (batch &#x00023;140 from A. G. Dickson, Scripps Institute of Oceanography) yielded TA values &#x02264;2.9 mmol kg<sup>&#x02212;1</sup> of the certified value (SE &#x0003D; 2.8 mmol kg<sup>&#x02212;1</sup>; <italic>n</italic> &#x0003D; 12). Weekly analyses of the pH of prepared Tris buffers (pH<sub>T</sub> &#x0003D; 8.096 at 25<sup><italic>o</italic></sup>C) yielded an average difference of 0.009 pH units (SE &#x0003D; 0.004 pH<sub>T</sub> units; <italic>n</italic> &#x0003D; 12). Values for dissolved inorganic carbon (DIC) were calculated from the measured TA, pH<sub>T</sub>, salinity, and temperature using the R package seacarb (Lavigne and Gattuso, <xref ref-type="bibr" rid="B35">2010</xref>).</p>
</sec>
<sec>
<title>Net production and net calcification measurements</title>
<p>Net production (<italic>P</italic>, mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) and net calcification (<italic>G</italic>, mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>), were calculated from changes in DIC (&#x00394;DIC) and TA (&#x00394;TA) using equations from Gattuso et al. (<xref ref-type="bibr" rid="B27">1996</xref>):</p>
<disp-formula id="E1"><label>(1)</label><mml:math id="M1"><mml:mrow><mml:mtext>P</mml:mtext><mml:mo>=</mml:mo><mml:mo stretchy='false'>[</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x00394;</mml:mo><mml:mtext>DIC</mml:mtext><mml:mo>&#x000D7;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mo>&#x003C1;</mml:mo><mml:mo>&#x000D7;</mml:mo><mml:mtext>v</mml:mtext><mml:mo stretchy='false'>)</mml:mo><mml:mo>/</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x00394;</mml:mo><mml:mtext>t</mml:mtext><mml:mo>&#x000D7;</mml:mo><mml:mtext>a</mml:mtext><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mi>G</mml:mi></mml:mrow></mml:math></disp-formula>
<disp-formula id="E2"><label>(2)</label><mml:math id="M2"><mml:mrow><mml:mtext>G</mml:mtext><mml:mo>=</mml:mo><mml:mo stretchy='false'>[</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x00394;</mml:mo><mml:mtext>TA</mml:mtext><mml:mo>&#x000D7;</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mo>&#x003C1;</mml:mo><mml:mo>&#x000D7;</mml:mo><mml:mtext>v</mml:mtext><mml:mo stretchy='false'>)</mml:mo><mml:mo>/</mml:mo><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x00394;</mml:mo><mml:mtext>t</mml:mtext><mml:mo>&#x000D7;</mml:mo><mml:mtext>a</mml:mtext><mml:mo>&#x000D7;</mml:mo><mml:mn>2</mml:mn><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where (&#x003C1;) is the density of seawater (kg m<sup>&#x02212;3</sup>) at the time seawater samples were collected, calculated from temperature and salinity, (v) is the volume (L) of the flumes and incubation chambers, (a) is the projected area (m<sup>2</sup>) of the community and community members, and (t) is time (hours) of the incubation. The ratio of <italic>P/G</italic> (mmol C mmol <inline-formula><mml:math id="M3"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>), for both the community and each individual community member, was calculated by dividing each day&#x00027;s measured <italic>P</italic> by the contemporaneously measured <italic>G</italic> (<italic>P/G</italic><sub>ratio</sub>). The slope of <italic>P</italic> regressed on <italic>G</italic> (mmol C mmol <inline-formula><mml:math id="M4"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>), for both the community and each individual community member, was calculated from a best fit type II sum of squares residual model, in which all measures of <italic>P</italic> over the course of the study were regressed on <italic>G</italic> for the respective community (<italic>P/G</italic><sub>slope</sub>), or individual community members.</p>
</sec>
<sec>
<title>Statistical analyses</title>
<p>Statistical analyses were performed with SPSS software (SPSS Inc. Version 22.0, (SPSS Inc. IBM Corp., <xref ref-type="bibr" rid="B46">2013</xref>)) running in a Windows environment, and the assumptions of normality and equality of variance were evaluated with graphical analyses of the residuals. An analysis of covariance (ANCOVA) was used to test the hypothesis that the relationships between <italic>P</italic> (dependent variable) and <italic>G</italic> (independent variable) differed among the flume community and community members. If <italic>P/G</italic><sub>slopes</sub> did not differ and, assuming that the null hypothesis of no differences was not rejected (for either slope or elevation), the results were pooled for the community (<italic>n</italic> &#x0003D; 28), and each community member (<italic>n</italic> &#x0003D; 12), and a new regression of P on G prepared, from which the slope of <italic>P/G</italic> was determined. To test for differences in the measured <italic>P/G</italic><sub>ratio</sub> between each flume community and each community member, an analysis of variance (ANOVA) was conducted where each community and community member were a fixed factor. A Bonferroni <italic>post-hoc</italic> test was used to compare the measured <italic>P/G</italic><sub>ratio</sub> among community members.</p>
<p>As the replicate 3-h incubations between 09:00 and 12:00 h (described above) took place on different days between 1 September 2014 and 11 October 2014, each day was characterized by different natural light regimes caused by variation in cloud cover and rain showers. The variation in PAR provided the opportunity to explore the relationship between the measured <italic>P/G</italic><sub>ratio</sub> and average PAR from each incubation period. A Pearson correlation was used to test the hypothesis that the <italic>P/G</italic><sub>ratio</sub> for each day was dependent on ambient PAR (averaged over the 3-h incubation period), and analyses were completed for each community and for the component community members.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>Relationship between <italic>P</italic> and <italic>G</italic> in the community and community members</title>
<p>Rates of metabolism are reported as the mean &#x000B1; SE, pooled among replicates. Community <italic>P</italic> was not significantly different between flumes [<italic>F</italic><sub>(1, 26)</sub> &#x0003D; 1.92, <italic>p</italic> &#x0003D; 0.311] and, when pooled between flumes (<italic>n</italic> &#x0003D; 28 per community), was 11.9 &#x000B1; 1.2 mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>. Constituent members in the flume communities (<italic>n</italic> &#x0003D; xx), when incubated separately, exhibited a <italic>P</italic> of 7.8 &#x000B1; 6.7 mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup> (pooled among all taxa), which was highest for <italic>P. verrucosa</italic> (15.4 &#x000B1; 1.1 mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>), and lowest for <italic>P. onkodes</italic> (2.9 &#x000B1; 0.1 mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>; Table <xref ref-type="table" rid="T1">1</xref>). Community <italic>G</italic> was not significantly different between flumes [<italic>F</italic><sub>(1, 26)</sub> &#x0003D; 1.56, <italic>p</italic> &#x0003D; 0.297] and, when pooled between flumes (<italic>n</italic> &#x0003D; 28 per community), was 3.6 &#x000B1; 0.3 mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>. Constituent members in the flume communities exhibited a <italic>G</italic> of 3.2 &#x000B1; 2.7 mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup> (pooled among taxa), which was highest for <italic>P. verrucosa</italic> (6.9 &#x000B1; 0.5 mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>), and lowest for <italic>P. onkodes</italic> (0.7 &#x000B1; 0.1 mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Seawater temperature [T (&#x000B0;C)], salinity (S), net production (<italic>P</italic>), and net calcification (<italic>G</italic>) for the experimental communities and their constituent members; values are mean &#x000B1; SE.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Group</bold></th>
<th valign="top" align="center"><bold>T (&#x000B0;C)</bold></th>
<th valign="top" align="center"><bold>S</bold></th>
<th valign="top" align="center"><bold><italic>P</italic></bold></th>
<th valign="top" align="center"><bold><italic>G</italic></bold></th>
<th valign="top" align="center"><bold><italic>P/G</italic><sub>slope</sub></bold></th>
<th valign="top" align="center"><bold><italic>P/G</italic><sub>ratio</sub></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Community</td>
<td valign="top" align="center">27.4 &#x000B1; 0.6</td>
<td valign="top" align="center">36.7 &#x000B1; 0.3</td>
<td valign="top" align="center">11.9 &#x000B1; 1.2</td>
<td valign="top" align="center">3.6 &#x000B1; 0.3</td>
<td valign="top" align="center">3.52 &#x000B1; 0.13</td>
<td valign="top" align="center">3.44 &#x000B1; 0.16</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Acropora retusa</italic></td>
<td valign="top" align="center">27.4 &#x000B1; 0.6</td>
<td valign="top" align="center">36.7 &#x000B1; 0.1</td>
<td valign="top" align="center">12.1 &#x000B1; 0.8</td>
<td valign="top" align="center">4.7 &#x000B1; 0.2</td>
<td valign="top" align="center">2.43 &#x000B1; 0.15</td>
<td valign="top" align="center">2.59 &#x000B1; 0.10</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Pocillopora verrucosa</italic></td>
<td valign="top" align="center">27.4 &#x000B1; 0.6</td>
<td valign="top" align="center">36.7 &#x000B1; 0.1</td>
<td valign="top" align="center">15.4 &#x000B1; 1.1</td>
<td valign="top" align="center">6.9 &#x000B1; 0.5</td>
<td valign="top" align="center">2.15 &#x000B1; 0.12</td>
<td valign="top" align="center">2.21 &#x000B1; 0.04</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Porites</italic> spp.</td>
<td valign="top" align="center">27.6 &#x000B1; 0.6</td>
<td valign="top" align="center">36.7 &#x000B1; 0.2</td>
<td valign="top" align="center">7.6 &#x000B1; 0.2</td>
<td valign="top" align="center">2.8 &#x000B1; 0.2</td>
<td valign="top" align="center">2.63 &#x000B1; 0.16</td>
<td valign="top" align="center">2.67 &#x000B1; 0.16</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Porolithon onkodes</italic></td>
<td valign="top" align="center">27.6 &#x000B1; 0.8</td>
<td valign="top" align="center">36.7 &#x000B1; 0.2</td>
<td valign="top" align="center">2.9 &#x000B1; 0.1</td>
<td valign="top" align="center">0.7 &#x000B1; 0.1</td>
<td valign="top" align="center">3.69 &#x000B1; 0.28</td>
<td valign="top" align="center">3.92 &#x000B1; 0.31</td>
</tr>
<tr>
<td valign="top" align="left">Pavement</td>
<td valign="top" align="center">27.5 &#x000B1; 0.7</td>
<td valign="top" align="center">36.7 &#x000B1; 0.1</td>
<td valign="top" align="center">6.7 &#x000B1; 0.3</td>
<td valign="top" align="center">1.2 &#x000B1; 0.2</td>
<td valign="top" align="center">6.21 &#x000B1; 0.32</td>
<td valign="top" align="center">5.83 &#x000B1; 0.37</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>The corresponding P/G<sub>ratio</sub> (calculated by dividing P by G: in units of mmol C mmol <inline-formula><mml:math id="M5"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext class="textit" mathvariant="italic">3</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mstyle class="text"><mml:mtext class="textit" mathvariant="italic">1</mml:mtext></mml:mstyle></mml:mrow></mml:msubsup></mml:math></inline-formula>) and slope (calculated from linear regressions of P vs. G: both in units of mmol C mmol <inline-formula><mml:math id="M6"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mstyle class="text"><mml:mtext class="textit" mathvariant="italic">3</mml:mtext></mml:mstyle></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mstyle class="text"><mml:mtext class="textit" mathvariant="italic">1</mml:mtext></mml:mstyle></mml:mrow></mml:msubsup></mml:math></inline-formula>) are listed for the community (n &#x0003D; 12 incubations) and each community member (n &#x0003D; 3 incubations)</italic>.</p>
</table-wrap-foot>
</table-wrap>
<p>Community <italic>P/G</italic><sub>slopes</sub> were not significantly different between flumes [<italic>F</italic><sub>(1, 26)</sub> &#x0003D; 1.21, <italic>p</italic> &#x0003D; 0.282] and when pooled between flumes (<italic>n</italic> &#x0003D; 28 per community), yielded a slope of 3.52 &#x000B1; 0.13 mmol C mmol <inline-formula><mml:math id="M7"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula> (Figure <xref ref-type="fig" rid="F3">3</xref>). Community <italic>P/G</italic><sub>ratios</sub> did not vary between flumes [<italic>F</italic><sub>(1, 26)</sub> &#x0003D; 1.057, <italic>p</italic> &#x0003D; 0.313] and, when pooled between flumes, was 3.44 &#x000B1; 0.16 mmol C mmol <inline-formula><mml:math id="M8"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula> (Table <xref ref-type="table" rid="T1">1</xref>). Community-member <italic>P/G</italic><sub>slopes</sub> were significantly different from one another [<italic>F</italic><sub>(4, 54)</sub> &#x0003D; 19.21, <italic>p</italic> &#x0003C; 0.001] and, for each community member (<italic>n</italic> &#x0003D; 12), slopes were maximal for the inorganic CaCO<sub>3</sub> pavement (6.21 &#x000B1; 0.32 mmol C mmol <inline-formula><mml:math id="M9"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>), and minimal for <italic>P. verrucosa</italic> (2.15 &#x000B1; 0.12 mmol C mmol <inline-formula><mml:math id="M10"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>; Figure <xref ref-type="fig" rid="F4">4</xref>). Community-member <italic>P/G</italic><sub>ratios</sub> differed among community members [<italic>F</italic><sub>(4, 54)</sub> &#x0003D; 22.57, <italic>p</italic> &#x0003C; 0.001], and for each community member, were maximal for the inorganic CaCO<sub>3</sub> pavement (5.83 &#x000B1; 0.37 mmol C mmol <inline-formula><mml:math id="M11"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>) and minimal for <italic>P. verrucosa</italic> (2.21 &#x000B1; 0.04 mmol C mmol <inline-formula><mml:math id="M12"><mml:msubsup><mml:mrow><mml:mtext>CaCO</mml:mtext></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup></mml:math></inline-formula>). <italic>Post-hoc</italic> analyses showed that <italic>P/G</italic><sub>ratios</sub> differed between community members (<italic>p</italic> &#x0003C; 0.001) except between <italic>A. retusa</italic> and <italic>Porites</italic> spp. (<italic>p</italic> &#x0003E; 0.05).</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Net production (mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) of reef communities as a function of net calcification (mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) in Community 1 (black) and Community 2 (gray). Slope and R<sup>2</sup> values are shown for each community.</p></caption>
<graphic xlink:href="fmars-04-00298-g0003.tif"/>
</fig>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Net production (mmol C m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) of reef communities as a function of net calcification (mmol CaCO<sub>3</sub> m<sup>&#x02212;2</sup> h<sup>&#x02212;1</sup>) for the community, <italic>P. verrucosa, A. retusa, Porites</italic> spp., <italic>P. onkodes</italic>, and pavement. Slope and <italic>r</italic><sup>2</sup>-values shown for each respective community member and the community.</p></caption>
<graphic xlink:href="fmars-04-00298-g0004.tif"/>
</fig>
</sec>
<sec>
<title>Relationship between par and <italic>P/G</italic></title>
<p>Over all days that metabolism was measured, PAR varied from 452 to 1,237 mmol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> during the 3-h incubation period, with a mean PAR of 996 &#x000B1; 238 mmol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> (<italic>n</italic> &#x0003D; 14). Over each incubation, <italic>P</italic> and <italic>G</italic> were positively and significantly correlated with PAR in community 1 (<italic>P</italic><sub>1</sub>: <italic>r</italic> &#x0003D; 0.86, <italic>df</italic> &#x0003D; 27, <italic>p</italic> &#x0003D; 0.01; <italic>G</italic><sub>1</sub>: <italic>r</italic> &#x0003D; 0.76, <italic>df</italic> &#x0003D; 27, <italic>p</italic> &#x0003D; 0.03) and community 2 (<italic>P</italic><sub>2</sub>: <italic>r</italic> &#x0003D; 0.78, <italic>df</italic> &#x0003D; 27, <italic>p</italic> &#x0003D; 0.032; <italic>G</italic><sub>2</sub>: <italic>r</italic> &#x0003D; 0.73, <italic>df</italic> &#x0003D; 27 <italic>p</italic> &#x0003D; 0.04). At the community member-level, <italic>P</italic> and <italic>G</italic> for <italic>A. retusa, P. verrucosa</italic>, and <italic>Porites</italic> spp. were significantly and positively correlated (<italic>p</italic> &#x0003C; 0.05) with PAR over each incubation period, but PAR was not significantly correlated (<italic>p</italic> &#x0003E; 0.05) with <italic>P</italic> and <italic>G</italic> for <italic>P. onkodes</italic> or pavement. PAR from each incubation period was not significantly correlated with any of the <italic>P/G</italic> values either at the community level or for each individual community member (<italic>p</italic> &#x0003E; 0.05).</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Comparing <italic>P</italic> and <italic>G</italic> for the communities and constituent taxa in this study revealed consistent values for <italic>P/G</italic><sub>ratio</sub> and <italic>P/G</italic><sub>slope</sub> across time (3 h) for reef communities and their community members, and a significant difference in <italic>P/G</italic><sub>ratio</sub> among community members. Correlations between the <italic>P/G</italic><sub>ratio</sub> and PAR revealed that <italic>P</italic> and <italic>G</italic> were positively correlated with PAR, which has been shown in most previous studies of these relationships (Chalker and Taylor, <xref ref-type="bibr" rid="B9">1978</xref>; Barnes and Chalker, <xref ref-type="bibr" rid="B7">1990</xref>; Gattuso et al., <xref ref-type="bibr" rid="B28">1993</xref>). However, PAR and <italic>P/G</italic><sub>ratio</sub> were unrelated. These results are similar to previous measurements of the community metabolism of coral reefs (e.g., Lantz et al., <xref ref-type="bibr" rid="B34">2014</xref>; Shaw et al., <xref ref-type="bibr" rid="B45">2015</xref>), and together they support two conclusions.</p>
<p>First, the lack of a significant relationship between average PAR intensity and <italic>P/G</italic><sub>ratio</sub> supports the notion that the <italic>P/G</italic><sub>ratio</sub> can provide an effective benchmark for the functional performance of coral reefs that normalizes the influence of variable PAR on <italic>P</italic> and <italic>G</italic>. Studies measuring coral reef community <italic>P</italic> and <italic>G in situ</italic> usually go to great lengths to quantify the influence of the abiotic parameters on these factors, and typically consider reef water residence time, wind speed, and average reef water depth. The commonly used Lagrangian and Eulerian methodologies (Gattuso et al., <xref ref-type="bibr" rid="B27">1996</xref>; Falter et al., <xref ref-type="bibr" rid="B24">2008</xref>) for measuring community <italic>P</italic> and <italic>G</italic> depend on the quantification of these abiotic parameters, so that <italic>P</italic> and <italic>G</italic> can be normalized for residence time of reef waters in order to support comparisons among varying time periods, or among different reefs. Once measurements are normalized for residence time, previous studies of shallow coral reefs have shown a strong coupling between PAR and <italic>P</italic>, and between PAR and <italic>G</italic> on 12-h diurnal timescales (Falter et al., <xref ref-type="bibr" rid="B23">2012</xref>), which supports the notion that <italic>P/G</italic><sub>ratio</sub> does not change in response to differences in PAR. An increase in PAR will enhance <italic>P</italic> and <italic>G</italic>, but because these two metabolic processes are tightly coupled on timescales of hours to days, <italic>P/G</italic> remains relatively constant when integrated over a day (Suzuki and Kawahata, <xref ref-type="bibr" rid="B47">2003</xref>). This finding is supported by the present study given that the <italic>P/G</italic><sub>ratio</sub> and <italic>P/G</italic><sub>slope</sub> for the communities and community members, remained nearly the same among days, even though mean daily <italic>P</italic> and <italic>G</italic> differed these among days. These results indicate that <italic>P/G</italic> relationships can be a reflection of the coupled daily balance between <italic>P</italic> and <italic>G</italic>, and do not change among days due to variation in average PAR.</p>
<p>The second conclusion from these data is that each community member exhibited a characteristic <italic>P/G</italic><sub>slope</sub> and <italic>P/G</italic><sub>ratio</sub> that remained statistically indistinguishable within each member over the study. This result suggests that the <italic>P/G</italic><sub>slope</sub> and <italic>P/G</italic><sub>ratio</sub> is a community- and taxon-specific value, which characterizes the balance in <italic>P</italic> and <italic>G</italic> specific to that community or organism, respectively. It is premature to conclude that the <italic>P/G</italic> relationship provides a general application to scaling between organisms and community-level process for coral reefs <italic>in situ</italic>, given the multitude of other parameters, such as body size, temperature, and stoichiometry, which also can affect intraspecific differences in metabolism (Brown et al., <xref ref-type="bibr" rid="B8">2004</xref>; Edmunds et al., <xref ref-type="bibr" rid="B21">2016</xref>). It must also be noted that the <italic>P/G</italic><sub>ratio</sub> is dependent on community <italic>P</italic> and, therefore, it should be affected by changes in the cover of non-calcifying autotrophic organisms (e.g., macroalgae). Similarly, while the <italic>P/G</italic> relationship reflects the balance between organic and inorganic carbon fixation, if both processes are changing proportionately to another environmental driver (natural or anthropogenic), then the <italic>P/G</italic> relationship may be insensitive to these changes.</p>
<p>These two conclusions suggest that changes in the <italic>in situ P/G</italic> relationship for a coral reef over time (e.g., months to years) may be a function of the relative cover of constituent community members, and reflects the balance between the <italic>P</italic> and <italic>G</italic> of a coral reef regardless of daily changes in light intensity. Given these results, the use of the <italic>P/G</italic><sub>ratio</sub> or <italic>P/G</italic><sub>slope</sub> could serve as a baseline ratio of carbon production for a coral reef, against which changes on disturbed reefs can be evaluated. This hypothesis is supported by the relationship between the mean <italic>P/G</italic><sub>slope</sub> and benthic cover of calcifiers in previous studies of coral reefs. An examination of studies that have measured the <italic>P/G</italic><sub>slope</sub> and recorded the percent benthic cover of coral or calcifying taxa shows that <italic>P/G</italic><sub>slope</sub> values are higher on reefs with a lower percent cover of calcifying taxa (Figure <xref ref-type="fig" rid="F5">5</xref>). A linear regression of the <italic>P/G</italic><sub>slope</sub> against percent cover of benthic calcifiers is statistically significant with a negative slope (<italic>y</italic> &#x0003D; &#x02212;0.18x &#x0002B; 8.62, <italic>r</italic><sup>2</sup> &#x0003D; 0.94, <italic>p</italic> &#x0003C; 0.05; Figure <xref ref-type="fig" rid="F5">5</xref>). According to this relationship, the <italic>P/G</italic><sub>slope</sub> value decreases by &#x0007E;1 unit for each 5.1 &#x000B1; 0.6% increase in cover of benthic calcifiers. The relationship between percent cover of calcifying taxa and the <italic>P/G</italic><sub>slope</sub> suggests that future work need measure these two parameters in unison in order to create the opportunity to further test the hypothesis that the <italic>P/G</italic> relationship can serve as a baseline ratio of carbon production for coral reefs.</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><italic>P/G</italic><sub>slope</sub> values from different studies (which have measured net <italic>P</italic> and net <italic>G</italic> together with percent coral cover on natural reef flat communities) as a function of percent cover of calcifying organisms for each study. (1) Present study with a <italic>P/G</italic><sub>slope</sub> &#x0003D; 3.52 and 27% coral cover; (2) a natural reef community in Waimanalo (Oahu), Hawai&#x00027;i, with a <italic>P/G</italic><sub>slope</sub> &#x0003D; 4.1 and 23% coral cover (Lantz et al., <xref ref-type="bibr" rid="B34">2014</xref>); (3) an experimental reef community in Oahu, Hawai&#x00027;i, with <italic>P/G</italic><sub>slope</sub> &#x0003D; 5.10 and 20% coral cover (Andersson et al., <xref ref-type="bibr" rid="B4">2009</xref>); (4) a natural reef community on the Great Barrier Reef with a <italic>P/G</italic><sub>slope</sub> &#x0003D; 6.4 and 15% coral cover (Suzuki and Kawahata, <xref ref-type="bibr" rid="B47">2003</xref>); (5) a natural reef community at Makapu&#x00027;u (Oahu), Hawai&#x00027;i, with a <italic>P/G</italic><sub>slope</sub> &#x0003D; 6.7 and 10% coral cover (Lantz et al., <xref ref-type="bibr" rid="B34">2014</xref>), and (6) a natural reef community in Palau with a <italic>P/G</italic><sub>slope</sub> &#x0003D; 6.83 and 8% coral cover (Watanabe et al., <xref ref-type="bibr" rid="B50">2006</xref>). Slope and <italic>r</italic><sup>2</sup>-value shown for the overall linear relationship.</p></caption>
<graphic xlink:href="fmars-04-00298-g0005.tif"/>
</fig>
<p>While the present study focused on the relationship between the <italic>P/G</italic><sub>ratio</sub> and PAR, we suggest that future work employ experimental designs that can distinguish the effects of other abiotic factors on the <italic>P/G</italic> relationship. These abiotic factors could include water flow (e.g., Comeau et al., <xref ref-type="bibr" rid="B15">2014</xref>), temperature (e.g., Reynaud et al., <xref ref-type="bibr" rid="B41">2003</xref>), or CO<sub>2</sub> (e.g., Schneider and Erez, <xref ref-type="bibr" rid="B43">2006</xref>). For example, water flow usually is correlated positively with both <italic>P</italic> (Nakamura et al., <xref ref-type="bibr" rid="B38">2003</xref>; Finelli et al., <xref ref-type="bibr" rid="B25">2006</xref>) and <italic>G</italic> (Dennison and Barnes, <xref ref-type="bibr" rid="B18">1988</xref>; Comeau et al., <xref ref-type="bibr" rid="B15">2014</xref>) at the organism level for tropical marine calcifiers due to the enhanced flux of metabolites between the organisms and the surrounding seawater (Mass et al., <xref ref-type="bibr" rid="B36">2010</xref>). However, the relationship between water flow and the ratio of <italic>P</italic> to <italic>G</italic> is unknown (i.e., if <italic>P</italic> and <italic>G</italic> change at the same rate in response to water flow). Likewise, it is unknown if a warming-driven decrease in <italic>G</italic> at temperatures &#x0003E;&#x0007E;28&#x000B0;C (Pratchett et al., <xref ref-type="bibr" rid="B40">2015</xref>) will occur at the same rate. In some cases, seawater warming has actually increased rates of scleractinian calcification (e.g., McCulloch et al., <xref ref-type="bibr" rid="B37">2012</xref>) and macro-algal photosynthesis (e.g., Zou and Gao, <xref ref-type="bibr" rid="B51">2013</xref>). Additionally, the overall response in <italic>G</italic> to temperature has varied both intra- (e.g., Comeau et al., <xref ref-type="bibr" rid="B14">2016a</xref>) and inter-specifically (Shaw et al., <xref ref-type="bibr" rid="B44">2016</xref>). A large number of OA studies have shown that an increase in pCO<sub>2</sub> will decrease <italic>G</italic> but not <italic>P</italic> (Kroeker et al., <xref ref-type="bibr" rid="B32">2013</xref>; Comeau et al., <xref ref-type="bibr" rid="B16">2017</xref>), although some studies suggest <italic>P</italic> may increase in response to a CO<sub>2</sub>-fertilization effect (Ries et al., <xref ref-type="bibr" rid="B42">2009</xref>; Kroeker et al., <xref ref-type="bibr" rid="B33">2010</xref>).</p>
<p>Therefore, it is difficult to predict how global climate change will modify the <italic>P/G</italic> relationships for coral reef communities given the potential for interspecific variation in the response of community members to global warming and OA. As global climate change continues to threaten the existence of coral reefs, there is a growing need for techniques to scale up results from perturbation experiments at the organism level to the community level. Building upon the present results and further quantifying community, as well as community member, <italic>P/G</italic> relationships for multiple reefs and community members will contribute to meeting these needs.</p>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>All authors listed have made a substantial, direct, and intellectual contribution to the work, and approved it for publication.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack>
<p>This research was conducted at the Richard B. Gump South Pacific Research Station (UC Berkeley) in collaboration with the Mo&#x00027;orea Coral Reef Long-Term Ecological Research (MCR LTER) program. We thank the MCR LTER for logistical support during boating and SCUBA diving field operations. This is contribution number xx of the CSUN Marine Biology Program.</p>
</ack>
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<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> During the course of this study, CL was supported by a National Science Foundation grant (OCE 14-15268) to PE and RC, which funded the entirety of work conducted, including the collection of taxa, maintenance of aquaria systems, and post-experimental laboratory analyses. SC was supported by ARC (Discovery Early Career Researcher Award; DE160100668) during the writing of the manuscript.</p>
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