<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2017.00269</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Non-intrusive Assessment of Photosystem II and Photosystem I in Whole Coral Tissues</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Szab&#x000F3;</surname> <given-names>Mil&#x000E1;n</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/395085/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Larkum</surname> <given-names>Anthony W. D.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/143683/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Suggett</surname> <given-names>David J.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/189010/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Vass</surname> <given-names>Imre</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/52052/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Sass</surname> <given-names>L&#x000E1;szl&#x000F3;</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Osmond</surname> <given-names>Barry</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zavafer</surname> <given-names>Alonso</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/449001/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ralph</surname> <given-names>Peter J.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/65640/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Chow</surname> <given-names>Wah S.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/230196/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Climate Change Cluster (C3), University of Technology Sydney</institution> <country>Ultimo, NSW, Australia</country></aff>
<aff id="aff2"><sup>2</sup><institution>Division of Plant Sciences, Research School of Biology, Australian National University</institution> <country>Acton, ACT, Australia</country></aff>
<aff id="aff3"><sup>3</sup><institution>Biological Research Centre, Institute of Plant Biology, Hungarian Academy of Sciences</institution> <country>Szeged, Hungary</country></aff>
<aff id="aff4"><sup>4</sup><institution>Centre for Sustainable Ecosystem Solutions, School of Biological Sciences, University of Wollongong</institution> <country>Wollongong, NSW, Australia</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Zvy Dubinsky, Bar-Ilan University, Israel</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Itay Cohen, Hebrew University of Jerusalem, Israel; Susana Enr&#x000ED;quez, National Autonomous University of Mexico, Mexico</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Mil&#x000E1;n Szab&#x000F3; <email>milan.szabo&#x00040;uts.edu.au</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Coral Reef Research, a section of the journal Frontiers in Marine Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>08</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>269</elocation-id>
<history>
<date date-type="received">
<day>02</day>
<month>03</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>03</day>
<month>08</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Szab&#x000F3;, Larkum, Suggett, Vass, Sass, Osmond, Zavafer, Ralph and Chow.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Szab&#x000F3;, Larkum, Suggett, Vass, Sass, Osmond, Zavafer, Ralph and Chow</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Reef building corals (phylum Cnidaria) harbor endosymbiotic dinoflagellate algae (genus <italic>Symbiodinium</italic>) that generate photosynthetic products to fuel their host&#x00027;s metabolism. Non-invasive techniques such as chlorophyll (Chl) fluorescence analyses of Photosystem II (PSII) have been widely used to estimate the photosynthetic performance of <italic>Symbiodinium in hospite</italic>. However, since the spatial origin of PSII chlorophyll fluorescence in coral tissues is uncertain, such signals give limited information on depth-integrated photosynthetic performance of the whole tissue. In contrast, detection of absorbance changes in the near infrared (NIR) region integrates signals from deeper tissue layers due to weak absorption and multiple scattering of NIR light. While extensively utilized in higher plants, NIR bio-optical techniques are seldom applied to corals. We have developed a non-intrusive measurement method to examine photochemistry of intact corals, based on redox kinetics of the primary electron donor in Photosystem I (P700) and chlorophyll fluorescence kinetics (Fast-Repetition Rate fluorometry, FRRf). Since the redox state of P700 depends on the operation of both PSI and PSII, important information can be obtained on the PSII-PSI intersystem electron transfer kinetics. Under moderate, sub-lethal heat stress treatments (33&#x000B0;C for &#x0007E;20 min), the coral <italic>Pavona decussata</italic> exhibited down-regulation of PSII electron transfer kinetics, indicated by slower rates of electron transport from Q<sub>A</sub> to plastoquinone (PQ) pool, and smaller relative size of oxidized PQ with concomitant decrease of a specifically-defined P700 kinetics area, which represents the active pool of PSII. The maximum quantum efficiency of PSII (<italic>F</italic><sub><italic>v</italic></sub>/<italic>F</italic><sub><italic>m</italic></sub>) and functional absorption cross-section of PSII (&#x003C3;<sub>PSII</sub>) remained unchanged. Based on the coordinated response of P700 parameters and PSII-PSI electron transport properties, we propose that simple P700 kinetics parameters as employed here serve as indicators of the integrity of PSII-PSI electron transfer dynamics in corals.</p>
</abstract>
<kwd-group>
<kwd>corals</kwd>
<kwd>photosynthesis</kwd>
<kwd>P700</kwd>
<kwd>chlorophyll fluorescence</kwd>
<kwd>heat stress</kwd>
</kwd-group>
<contract-num rid="cn001">DP120101360</contract-num>
<contract-num rid="cn001">FT130100202</contract-num>
<contract-num rid="cn002">NN110960</contract-num>
<contract-sponsor id="cn001">Australian Research Council<named-content content-type="fundref-id">10.13039/501100000923</named-content></contract-sponsor>
<contract-sponsor id="cn002">Nemzeti Kutat&#x000E1;si &#x000E9;s Technol&#x000F3;giai Hivatal<named-content content-type="fundref-id">10.13039/501100003827</named-content></contract-sponsor>
<contract-sponsor id="cn003">University of Wollongong<named-content content-type="fundref-id">10.13039/501100001777</named-content></contract-sponsor>
<counts>
<fig-count count="8"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="67"/>
<page-count count="12"/>
<word-count count="9766"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Coral reefs are one of the world&#x00027;s most productive and diverse ecosystems, sustained through a symbiosis between reef-building corals and their endosymbiont eukaryotic microalgal partner (<italic>Symbiodinium</italic> sp.) and a complex bacterial consortia (Ainsworth et al., <xref ref-type="bibr" rid="B2">2010</xref>). Nutrient exchange between partners is fuelled primarily by <italic>Symbiodinium</italic>&#x00027;s photosynthetic productivity and hence light utilization is a key factor driving coral metabolism from the organismal (Roth, <xref ref-type="bibr" rid="B50">2014</xref>) to the entire ecological (Muir et al., <xref ref-type="bibr" rid="B40">2015</xref>) reef scale. As the highly orchestrated symbiotic metabolic exchange can be threatened by several environmental stress factors that may impact coral metabolism, it is crucial to understand stress impacts at the holobiont level through integrated bio-optical/bio-physical, metabolomics and molecular approaches (Pernice and Levy, <xref ref-type="bibr" rid="B44">2014</xref>). The importance of understanding the photosynthetic processes is particularly critical to revealing the light utilization efficiency and thus niche specialization of corals across a range of biogeographical habitats. Such knowledge also characterizes a range of regulatory mechanisms that respond to environmental stress that define the resilience of the coral holobiont (Roth, <xref ref-type="bibr" rid="B50">2014</xref>; Warner and Suggett, <xref ref-type="bibr" rid="B66">2016</xref>). Photosynthetic productivity of <italic>Symbiodinium</italic> sp. is highly regulated via the coupled inter-system electron transfer processes between photosystem II (P680) and photosystem I (P700), but the regulation mechanisms of this process in <italic>Symbiodinium</italic> are still poorly understood.</p>
<p>Under steady state environmental conditions, PSII and PSI work in series to ensure the linear flow of electrons from the donor side of PSII to the acceptor side of PSI, and in turn drive CO<sub>2</sub> fixation via the Calvin-Benson Cycle. This linear electron flow is coupled with translocation of protons from the stroma to the lumen to build up a proton motive force that drives ATP synthase activity, producing a defined ratio of ATP and NADPH (e.g., Kramer and Evans, <xref ref-type="bibr" rid="B34">2011</xref>). Over-reduction of the plastoquinone pool that could naturally occur under midday high irradiance levels e.g., in shallow reefs (Gorbunov et al., <xref ref-type="bibr" rid="B12">2001</xref>) or as a result of impaired CO<sub>2</sub> fixation may initiate alternative pathways of electron flow to dissipate excessive excitation energy to avoid photo-oxidative stress while maintaining coordinated level of ATP production and NADPH synthesis (Cardol et al., <xref ref-type="bibr" rid="B6">2011</xref>). For <italic>Symbiodinium</italic>, these processes are much less characterized than in higher plants or green algae (Warner and Suggett, <xref ref-type="bibr" rid="B66">2016</xref>), but evidence suggests that alternative electron transport can manifest itself in the form of cyclic electron flow (CEF) operating between PSI and the cytochrome b<sub>6</sub>/f complex possibly via the ferredoxin-dependent pathway (Aihara et al., <xref ref-type="bibr" rid="B1">2016</xref>), or pseudo-cyclic electron flow of Mehler reaction, that plays a significant role in excess energy dissipation (Roberty et al., <xref ref-type="bibr" rid="B49">2014</xref>). Expression of these pathways, however, may differ significantly between different <italic>Symbiodinium</italic> genotypes (Aihara et al., <xref ref-type="bibr" rid="B1">2016</xref>; Warner and Suggett, <xref ref-type="bibr" rid="B66">2016</xref>).</p>
<p>To characterize photosynthetic efficiency on multiple levels of organization of the symbiont algae, e.g., from free living state to single nubbins and <italic>in situ</italic> colonies, one of the most frequently applied methods is the detection of variable fluorescence of chlorophyll <italic>a</italic> (Chl <italic>a</italic>) (Warner et al., <xref ref-type="bibr" rid="B65">2010</xref>). Such methods have been broadly applied to investigate light use efficiency (Gorbunov et al., <xref ref-type="bibr" rid="B12">2001</xref>; Ralph et al., <xref ref-type="bibr" rid="B46">2005</xref>; Szab&#x000F3; et al., <xref ref-type="bibr" rid="B58">2014</xref>), photoacclimation (Hill and Ralph, <xref ref-type="bibr" rid="B18">2005</xref>; Hennige et al., <xref ref-type="bibr" rid="B14">2008</xref>; Lichtenberg et al., <xref ref-type="bibr" rid="B37">2016</xref>), and photodamage (Ragni et al., <xref ref-type="bibr" rid="B45">2010</xref>; Hill et al., <xref ref-type="bibr" rid="B15">2011</xref>; Hill and Takahashi, <xref ref-type="bibr" rid="B22">2014</xref>; Schrameyer et al., <xref ref-type="bibr" rid="B52">2016</xref>) of intact corals under various environmental stress conditions. However, chlorophyll <italic>a</italic> fluorescence measurements of whole coral tissues are not always straightforward due to a strong light gradient and other complex optical properties specific to coral tissues (Enr&#x000ED;quez et al., <xref ref-type="bibr" rid="B8">2005</xref>; Wangpraseurt et al., <xref ref-type="bibr" rid="B62">2012</xref>, <xref ref-type="bibr" rid="B61">2014</xref>; Schrameyer et al., <xref ref-type="bibr" rid="B53">2014</xref>; Lichtenberg et al., <xref ref-type="bibr" rid="B37">2016</xref>). Light attenuation within coral tissue is strongly wavelength dependent (Wangpraseurt et al., <xref ref-type="bibr" rid="B62">2012</xref>; Szab&#x000F3; et al., <xref ref-type="bibr" rid="B58">2014</xref>), which particularly influences both the penetration depth of the excitation light beam projected onto the coral surface and the re-absorption of the fluorescence. Attempts to overcome this fundamental problem, based on attenuation of the functional absorption-cross section of PSII (&#x003C3;) as a measure of effective irradiance within the tissue, are limited by the fact that these measurements are still performed at the coral surface thereby giving rise to potential artifacts of light attenuation of the probing and actinic light from the surface (Szab&#x000F3; et al., <xref ref-type="bibr" rid="B58">2014</xref>). More recently, combined microfiber PAM and dissolved oxygen measurements were performed throughout the entire depth of the tissue, revealing stratification of chlorophyll <italic>a</italic> fluorescence signals from different symbiont layers with potentially different photoacclimation states (Lichtenberg et al., <xref ref-type="bibr" rid="B37">2016</xref>). In addition, such measurements are still fundamentally invasive and less convenient for rapid monitoring of photosynthetic performance of whole corals, and do not provide information about PSI operation and/or electron transfer, an important regulatory process of alternative electron flow processes.</p>
<p>Whilst past studies have applied a combination of biophysical/photobiological methods (e.g., oxygen evolution and uptake measurements, variable chlorophyll <italic>a</italic> fluorescence and PSI reaction center (P700) redox kinetics) to evaluate the mechanisms underpinning photobiological operation (e.g., Suggett et al., <xref ref-type="bibr" rid="B57">2008</xref>; Roberty et al., <xref ref-type="bibr" rid="B49">2014</xref>; Aihara et al., <xref ref-type="bibr" rid="B1">2016</xref>), most of these measurements require invasive treatment that is impractical on intact corals. Simultaneous measurements of Photosystems I and II electron transport rates [ETR(I) and ETR(II), respectively] in intact corals have been reported (Hoogenboom et al., <xref ref-type="bibr" rid="B23">2012</xref>). However, their approach did not enable meaningful information to be derived about the kinetics of the intersystem electron transfer and the plastoquinone (PQ) pool size, which are the most significant descriptors of &#x0201C;active&#x0201D; PSII. Moreover, no assessment of the active pool of PSII based on P700 redox kinetics signal has been undertaken. P700 kinetics based on near-infrared (NIR) reflectance detection is a known whole-tissue measure for whole chain PSII and PSI electron transport e.g., in plant leaves (Jia et al., <xref ref-type="bibr" rid="B25">2014</xref>), but its applicability for concerted PSII-PSI activity has not yet been evaluated in corals.</p>
<p>Our objective here was therefore to determine the applicability of simple P700 redox kinetic measurements to (i) assay both PSII and PSI activity, (ii) evaluate the applicability of PSI redox kinetics measurements in comparison with PSII chlorophyll <italic>a</italic> fluorescence kinetics measurements and (iii) reveal the behavior of coupled PSII-PSI electron transport under acute heat stress in the common Great Barrier Reef coral <italic>Pavona decussata</italic>, which is considered a relatively heat tolerant species in terms of photosynthetic activity. Due to such high thermal tolerance, this model species allows the investigation of fine changes of photosynthetic activity under short, acute stress conditions without initiating major alterations in photosynthetic pigment content, permanent physiological damage or symbiont expulsion e.g., during coral bleaching (McClanahan, <xref ref-type="bibr" rid="B39">2004</xref>; Hill et al., <xref ref-type="bibr" rid="B16">2012</xref>; Kr&#x000E4;mer et al., <xref ref-type="bibr" rid="B35">2013</xref>; Schrameyer et al., <xref ref-type="bibr" rid="B53">2014</xref>, <xref ref-type="bibr" rid="B52">2016</xref>).</p>
<p>We show that (i) P700 redox kinetics as applied here provide accurate estimate of both the active PSII electron pool and the steady-state and maximal levels of P700<sup>&#x0002B;</sup> and (ii) sub-lethal heat stress impacts the redox state of P700<sup>&#x0002B;</sup> and PSII electron transfer processes, maintaining an enhanced electron turnover via PSI, even when linear electron flow from PSII is transiently impaired.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Coral material</title>
<p>Colonies of the coral species <italic>P. decussata</italic> (Dana) were collected from Heron Island lagoon, located on the southern Great Barrier Reef of Australia (151&#x000B0;55&#x02032;E, 23&#x000B0;270&#x02032;S) during July 2015. Prior to experimentation, coral colonies were maintained for 4&#x02013;6 months in a recirculating 500-L aquarium at the University of Technology Sydney under constant temperature of 25&#x000B0;C, salinity of 32 ppt, and irradiance of 150 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> (provided by Hydra FiftyTwo HD LED array, Aquaillumination&#x000AE;, C2 Development, Inc., USA) on a 12 h:12 h light:dark cycle. Before all measurements, <italic>P. decussata</italic> fragments (2&#x02013;4 cm) were cut from the parent colonies and maintained for at least 12 h in 10-L aquaria aerated by bubbling of ambient air at 25&#x000B0;C and irradiance of 150 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>.</p>
<p>For experimental treatments, coral nubbins were transiently moved to an optical glass cuvette (4 &#x000D7; 4 &#x000D7; 4 cm, Hellma Inc.) filled with seawater and constantly aerated with an air pump at a temperature of 25&#x000B0;C (control conditions) or set to a desired temperature using a heater/chiller (Julabo Ltd.) as described in the heat treatment section.</p>
</sec>
<sec>
<title>Simultaneous measurements of PSII and PSI photosynthetic electron transport</title>
<p>In order to measure the operation of PSII and PSI reaction center simultaneously, PSII chlorophyll fluorescence parameters (described in details in &#x0201C;<italic>Active chlorophyll a fluorometry&#x0201D;</italic>) and P700 kinetics (described in details in &#x0201C;<italic>Measurement of redox kinetics of P700&#x0201D;</italic> section) were recorded on the same spot of the same specimen, and under identical conditions (the configuration of the setup is shown in Figure <xref ref-type="supplementary-material" rid="SM1">S1</xref>). This was achieved using a multi-furcated fiber optics light-guide (Heinz Walz GmbH, Effeltrich, Germany) that integrated various probing light sources into a single light-guide aligned to the coral nubbin within the cuvette (described in &#x0201C;<italic>Coral material&#x0201D;</italic> section). The same multi-furcated fiber optic system also served for guiding P700/fluorescence signals to the chlorophyll fluorescence detectors and P700 emitter-detector unit. With this setup (Figure <xref ref-type="supplementary-material" rid="SM1">S1</xref>), potential artifacts resulting from differences in optical geometry and measuring conditions were minimized.</p>
</sec>
<sec>
<title>Measurement of redox kinetics of P700</title>
<p>Measurement of P700 redox changes in the current study is based on the principle that absorbance changes at &#x0007E;820 nm are related to changes in redox levels of the photosystem I reaction center P700, varying between 100% reduced (P700) and 100% oxidized (P700<sup>&#x0002B;</sup>) states (Klughammer and Schreiber, <xref ref-type="bibr" rid="B30">1994</xref>). The lowest signal level is related to 100% reduced P700, which upon application of far-red background light, is oxidized to the steady-state P700<sup>&#x0002B;</sup> level. Upon application of a saturation pulse (usually of white light that saturates both PSII and PSI), P700 becomes fully oxidized, representing 100% P700<sup>&#x0002B;</sup>. After cessation of the saturation pulse, electron flow from PSII reduces P700<sup>&#x0002B;</sup>, lowering the signal levels usually below the initial steady-state P700 level (because of the strong reducing pressure of electrons from PSII electrons, if active). With the far-red light continuously turned on, P700 is re-oxidized to the given steady state level. The corresponding changes in absorbance were monitored using a dual wavelength (820/870 nm) unit (ED-P700DW) attached to a pulse amplitude modulation (PAM) fluorometer (Heinz Walz GmbH, Effeltrich, Germany) in reflectance mode, in a custom made setup that synchronizes illumination and data acquisition using a multi-channel programmable pulse/delay generator, as described in details previously (Kou et al., <xref ref-type="bibr" rid="B33">2013</xref>).</p>
<p>The amount of photo-oxidisable P700 was initially obtained by illuminating each coral nubbin with continuous far-red light illumination (&#x0007E;200 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>, peak wavelength 740 nm, from an LED735-66-60 diode array, Roithner LaserTechnik, Vienna, Austria) for &#x0007E;10 s to reach steady-state P700 oxidation. A measuring sequence was then initiated, which consisted of (i) a 50 ms delay phase to record the steady-state P700<sup>&#x0002B;</sup>, (ii) a single-turnover saturating xenon flash (ST, irradiance &#x0003E;10<sup>6</sup> &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>, Heinz Walz GmbH, Effeltrich, Germany) to fully photo-oxidize P700 to form 100% P700<sup>&#x0002B;</sup> and (iii) a subsequent 900 ms phase to record P700 redox kinetics changes after cessation of the saturation pulse, but with background far-red light continuously present during the entire cycle. The peak level of the signal immediately after the saturation flash was denoted as <italic>P</italic><sub><italic>m</italic></sub>, representing the maximum photo-oxidisable P700. P700 kinetics signals following the saturation pulse were analyzed using a mathematical integration of the area that is bounded by the horizontal line representing the initial and final steady-state P700<sup>&#x0002B;</sup> levels in continuous far-red light, and the dipping curve representing the transient reduction of P700<sup>&#x0002B;</sup> by electrons donated by PSII after a saturating flash&#x02014;termed the &#x0201C;P700 kinetics area&#x0201D; for short (Kou et al., <xref ref-type="bibr" rid="B32">2012</xref>; Hu et al., <xref ref-type="bibr" rid="B24">2013</xref>; Fan et al., <xref ref-type="bibr" rid="B10">2016b</xref>). One measuring cycle lasted for 950 ms, and 8 sequences, at 0.2 Hz, were averaged into a single trace to improve signal-to-noise.</p>
</sec>
<sec>
<title>Active chlorophyll <italic>a</italic> fluorometry</title>
<p>Variable chlorophyll fluorescence parameters were determined by Fast-Repetition Rate fluorometry (LIFT-FRRf, Soliense Inc.) using the &#x0201C;Q<sub>A</sub> flash excitation&#x0201D; protocol, based on single turnover (ST) flashes. The instrument and the principle of the Q<sub>A</sub> flash excitation protocol are described in detail Osmond et al. (<xref ref-type="bibr" rid="B43">2017</xref>). Briefly, excitation light provided by a blue LED (&#x0007E;470 nm peak wavelength) is focused by the custom-built, 12 cm aperture telescope onto a &#x0007E;2 cm diameter spot that was aligned with one of the entry arms of the fiber-optics used for P700 and PAM measurements, providing a combined exit point of the fiber-optics facing the coral sample side (described above). The Q<sub>A</sub> flash excitation protocol from the LIFT-FRRf marine instrument applied &#x0007E;1 &#x003BC;s flashlets of blue excitation light in a saturation sequence of 180 flashlets at 50% duty cycle (average excitation power of about 6300 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup>), spaced at 2 &#x003BC;s intervals, and a relaxation sequence with 90 flashlets with exponentially increasing intervals starting at 20 &#x003BC;s, resulting in a 362 &#x003BC;s long saturation sequence and a 28788 &#x003BC;s long relaxation sequence (29150 &#x003BC;s in total). The same telescope collected the red chlorophyll fluorescence signal, separated from the 470 nm excitation light using a 45&#x000B0; dichroic mirror (Edmund Optics NT47-948) and conveyed by a 12.5 mm diameter flexible 1 m optical fiber to the detector unit of the instrument. A 685 nm interference filter (25 nm bandwidth, 75% transmission; custom-made by Intor Inc.) further separated the chlorophyll fluorescence emission from the reflected excitation light.</p>
<p>The Q<sub>A</sub> flash-induced fluorescence changes were analyzed using the automated fitting algorithm of the Soliense software (<ext-link ext-link-type="uri" xlink:href="http://soliense.com/LIFT_Method.php">http://soliense.com/LIFT_Method.php</ext-link>) according to the biophysical FRR model of Kolber et al. (<xref ref-type="bibr" rid="B31">1998</xref>). The variable fluorescence yield, <italic>F</italic><sub><italic>v</italic></sub> is calculated as <italic>F</italic><sub><italic>v</italic></sub> &#x0003D; <italic>F</italic><sub><italic>m</italic></sub>&#x02013;<italic> F</italic><sub><italic>o</italic></sub>, where <italic>F</italic><sub><italic>o</italic></sub> is minimal fluorescence and <italic>F</italic><sub><italic>m</italic></sub> is maximal fluorescence with fully reduced Q<sub>A</sub>. The maximum photochemical efficiency of PSII is thus expressed as <italic>F</italic><sub><italic>v</italic></sub>/<italic>F</italic><sub><italic>m</italic></sub>. In addition, the functional absorption cross-section of PSII (&#x003C3;<sub><italic>PSII</italic></sub>), the kinetics of electron transport between PSII and PSI and the oxidized portion of PQ pool were estimated by fitting the LIFT-FRR fluorescence transients to the FRR model [<ext-link ext-link-type="uri" xlink:href="http://soliense.com/LIFT_Method.php">http://soliense.com/LIFT_Method.php</ext-link>, &#x0201C;Size of the oxidized portion of PQ pool (PQ<sub>ox</sub>)&#x0201D;]. The decline in fluorescence yield during the relaxation of Q<sub>A</sub> flash acquisition is fitted by two exponentials (&#x003C4;<sub>1</sub> and &#x003C4;<sub>2</sub>) corresponding to the half times for electron transfer from faster component (in plants commonly referred as Q<sub>A</sub> to the PQ) and slower component (in plants commonly referred as PQ pool to PSI, respectively, Osmond et al., <xref ref-type="bibr" rid="B43">2017</xref>; and <ext-link ext-link-type="uri" xlink:href="http://soliense.com/LIFT_Method.php">http://soliense.com/LIFT_Method.php</ext-link>).</p>
<p>Another method to monitor chlorophyll fluorescence is the so called OJIP protocol or the Kautsky induction curve or the polyphasic rise of chlorophyll fluorescence. This method consists of monitoring the kinetics of the chlorophyll induction curve in the transition between dark to light adapted state (Kalaji et al., <xref ref-type="bibr" rid="B29">2017</xref>). This protocol primary measures the transition between the point where all PSII reaction center are open (refer as O step or <italic>F</italic><sub><italic>o</italic></sub> at 20 &#x003BC;s) to the point where all reaction centers are closed and the fluorescence intensity reaches its maximum, nominally called Peak (refer as P step or <italic>F</italic><sub><italic>m</italic></sub>) (Strasser, <xref ref-type="bibr" rid="B54">1992</xref>). Additionally, two inflections can be observed at 2 ms (J step) and at 20 ms (I step). These four steps delimit three phases: OJ, JI and IP and conventionally it is believed that they are associated with events in the electron transport chain (ETC) (Strasser, <xref ref-type="bibr" rid="B54">1992</xref>; Kalaji et al., <xref ref-type="bibr" rid="B29">2017</xref>). The OJ, photochemical phase, relates to the reduction of the acceptor side of PSII (Strasser, <xref ref-type="bibr" rid="B54">1992</xref>). The JI phase relates to the transport beyond Q<sub>A</sub> and IP phase relates to several processes, in particular the electrons reaching PSI (Schansker et al., <xref ref-type="bibr" rid="B51">2005</xref>; Kalaji et al., <xref ref-type="bibr" rid="B29">2017</xref>). The induction curve of the chlorophyll <italic>a</italic> fluorescence (OJIP transient) was measured at 25&#x000B0;C using a Multichannel-Plant Efficiency Analyzer 2 (M-PEA, Hansatech Instruments, UK) (for a full description of the instrument refer to Strasser et al., <xref ref-type="bibr" rid="B55">2010</xref>). The excitation, saturating and actinic light was 660 nm with an intensity of 5000 photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> for 10 s. Fragments of corals were placed in an optical glass cuvette (described in &#x0201C;Coral material&#x0201D;) filled with seawater. The cuvette was placed in front of the sensor head without the use of a leaf clip. To increase the light homogeneity within the sample holder, the cuvette was covered in aluminum foil. The sample was kept in darkness for 10 min with constant air bubbling.</p>
</sec>
<sec>
<title>Heat stress and recovery experiment</title>
<p>Coral nubbins (<italic>n</italic> &#x0003D; 3) in the optical glass cuvette were dark-acclimated at 25&#x000B0;C for 10 min under continuous aeration to measure <italic>P</italic><sub><italic>m</italic></sub>, the P700 kinetics area, steady-state P700<sup>&#x0002B;</sup> and <italic>F</italic><sub><italic>v</italic></sub>/<italic>F</italic><sub><italic>m</italic></sub> in the dark-acclimated state (denoted as &#x0201C;control&#x0201D;). After recording photophysiological parameters in the &#x0201C;control&#x0201D; phase, the temperature was elevated to 33&#x000B0;C within &#x0007E;15 min. Following 20 min of elevated temperature treatment, the effects of the heat stress were recorded (denoted as &#x0201C;heat&#x0201D;). Samples were then returned to 25&#x000B0;C within &#x0007E;15 min, and after a further 20 min, the measurement sequence was repeated (denoted as &#x0201C;recovery&#x0201D;). In order to avoid any potential changes in the electron transport chain due to long dark acclimation periods (Hill and Ralph, <xref ref-type="bibr" rid="B19">2008</xref>), samples were kept at growth irradiance &#x0007E;100 &#x003BC;mol photons m<sup>&#x02212;2</sup> s<sup>&#x02212;1</sup> of white light under constant aeration in the same optical glass cuvette throughout. This background light was kept on for the entire experiment, during the control, heat and recovery measurements, except the 10 min dark adaptation periods where the maximum quantum yield and the dark adapted P700 parameters were recorded. Measurements were performed through the fiber optic system on the same spot for the control, heat treatment and recovery phases, on three separate nubbins (independent biological replicates).</p>
</sec>
<sec>
<title>Inhibitor treatments</title>
<p><italic>Pavona decussata</italic> nubbins were first measured without the application of any inhibitor to determine baseline responses. Various chemical inhibitors were then added directly to the seawater surrounding the nubbins during the control measurements. DCMU (3-(3,4-dichlorophenyl)-1,1-dimethylurea) was applied at a final concentration of 40 &#x003BC;M in complete darkness for &#x0007E;20 min, after which P700 measurements were performed. In the case of DCMU treatment, a combined heat treatment was also performed as described above (&#x0201C;Heat stress and recovery&#x0201D;). In a second experiment, the Calvin-Benson cycle inhibitor glycolaldehyde (GA) was applied at a final concentration of 5 mM in the same manner as for DCMU.</p>
</sec>
<sec>
<title>Statistical analyses</title>
<p>Paired Sample <italic>t</italic>-test was applied for paired comparisons of parameter means (specified in Results) of heat-treated and control samples (with equal variances) using Origin Pro 9.1 (Origin, USA).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec>
<title>P700 redox kinetics under heat stress and recovery</title>
<p>Steady-state P700<sup>&#x0002B;</sup> reflects the actual oxidized level of the P700<sup>&#x0002B;</sup> pool under weak far-red illumination, which attained the maximal level of P700<sup>&#x0002B;</sup> (<italic>P</italic><sub><italic>m</italic></sub>) upon receiving a strong saturation pulse (SP). As a result of the high intensity of the saturation pulse, electron flow from PSII led to the re-reduction of P700<sup>&#x0002B;</sup>, with a decline in P700<sup>&#x0002B;</sup> below the initial steady-state P700<sup>&#x0002B;</sup>. As the background FR light was continuously on, P700<sup>&#x0002B;</sup> increased again (due to the reoxidation of P700) and within &#x0007E;1000 ms attained a steady-state level. In the same specimen, under heat stress, the P700<sup>&#x0002B;</sup> trace exhibited similar pattern; however, the initial P700<sup>&#x0002B;</sup> level decreased and the P700 kinetics area became smaller, indicating slowing of electron flow from PSII under heat stress. These changes partially recovered to the original level upon cooling back to 25&#x000B0;C (Figure <xref ref-type="fig" rid="F1">1</xref>, representative traces).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Representative P700<sup>&#x0002B;</sup> kinetics signals of <italic>P. decussata</italic> estimated based on the absorbance changes at 820 nm (in reflectance mode). Measurements were done at 25&#x000B0;C (control, black line), at 33&#x000B0;C (heat, red line), and 25&#x000B0;C after the heat treatment (recovery, blue line). P700<sup>&#x0002B;</sup> signal intensity is shown in relative units as [P700<sup>&#x0002B;</sup>] (relative). The initial 50 ms of the signal represents the steady state P700 level in the presence of weak far-red light. At time point <italic>t</italic> &#x0003D; 0 ms, a saturating pulse (SP) was applied to fully oxidize P700 (thus all P700 reaction centers are in the form of P700<sup>&#x0002B;</sup>, denoted as <italic>P</italic><sub><italic>m</italic></sub>, representing the highest absorbance at 820 nm, dashed line with the respective colors of the different treatments). Electrons from PSII reduce P700<sup>&#x0002B;</sup>, causing a decline in 820 nm absorbance to a level below the initial (first 50 ms) P700 redox level (because the reducing electron flow originating presumably from PSII exceeds the rate of forward electron flow out of PSI). As the weak FR light is continuously on (as indicated over the X axis), P700 gets reoxidized, causing the 820 nm signal to return to the steady-state level within &#x0007E;900 ms. For detailed description of P700 kinetics measurements, refer to Materials and methods. For heat-induced changes in P700 kinetics signal, refer to main text.</p></caption>
<graphic xlink:href="fmars-04-00269-g0001.tif"/>
</fig>
<p>As the absolute values of <italic>P</italic><sub><italic>m</italic></sub>, steady-state P700<sup>&#x0002B;</sup> and P700 kinetics area varies from specimen to specimen due to potential differences in symbiont density and optical properties etc., heat induced changes in P700 parameters are represented as relative changes (Figure <xref ref-type="fig" rid="F2">2</xref>). <italic>P</italic><sub><italic>m</italic></sub> significantly declined by &#x0007E;25% under heat stress and did not fully recover after the stress removal, compared to the untreated control (Figure <xref ref-type="fig" rid="F2">2A</xref>). Steady-state P700<sup>&#x0002B;</sup> significantly declined by &#x0007E;50% and recovered to &#x0007E;80% of the untreated control values (Figure <xref ref-type="fig" rid="F2">2B</xref>). P700 kinetics area significantly declined by &#x0007E;50% and exhibited only a partial recovery to &#x0007E;70% of the untreated control (Figure <xref ref-type="fig" rid="F2">2C</xref>). These trends suggest overall that the reduced form of PSI (i.e., less P700<sup>&#x0002B;</sup>) is more prevalent under acute heat stress.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Relative changes in P700 parameters in the coral <italic>P. decussata</italic> over the course of heat treatment and recovery period. <italic>P</italic><sub><italic>m</italic></sub> <bold>(A)</bold>, initial steady-state level of P700<sup>&#x0002B;</sup> <bold>(B)</bold>, and the values of P700 kinetics area (&#x0201C;PSII area&#x0201D;) <bold>(C)</bold>; control, black column; heat treatment, red column and recovery, blue column. Signals were recorded on the same samples under the same temperature treatment as described in Figure <xref ref-type="fig" rid="F1">1</xref>. Statistically significant differences of parameters between control and treatment (<italic>p</italic> &#x0003C; 0.05) are denoted with asterisks. Error bars are standard errors of mean (SEM), <italic>n</italic> &#x0003D; 3.</p></caption>
<graphic xlink:href="fmars-04-00269-g0002.tif"/>
</fig>
</sec>
<sec>
<title>P700 redox kinetics under heat stress conditions, when linear electron flow was chemically inhibited by DCMU</title>
<p>Under acute heat stress P700<sup>&#x0002B;</sup> decreased; however, under these conditions it was not possible to judge to what extent linear electron flow from PSII might have contributed to redox changes of P700<sup>&#x0002B;</sup>. Therefore, in order to investigate the behavior of P700 kinetics independently from PSII processes, the heat treatment experiment was performed on coral fragments when the linear electron flow was chemically blocked with DCMU (Jones et al., <xref ref-type="bibr" rid="B28">2003</xref>). Treatment of <italic>P. decussata</italic> nubbins with DCMU completely eliminated the P700 kinetics area below the steady level (at 25&#x000B0;C) (Figure <xref ref-type="fig" rid="F3">3</xref>).</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Representative P700<sup>&#x0002B;</sup> kinetics signals of <italic>P. decussata</italic> when linear electron flow was chemically blocked by DCMU. Measurements were done at 25&#x000B0;C (control, black line), at 33&#x000B0;C (heat, red line), and 25&#x000B0;C after the heat treatment (recovery, blue line) all in the presence of 40 &#x003BC;M DCMU. Grey lines show the control signal in the absence of DCMU (recorded at 25&#x000B0;C). The same illumination protocol was applied as shown and described in Figure <xref ref-type="fig" rid="F1">1</xref>. P700<sup>&#x0002B;</sup> signal intensity is shown in relative units as [P700<sup>&#x0002B;</sup>] (relative).</p></caption>
<graphic xlink:href="fmars-04-00269-g0003.tif"/>
</fig>
<p>The parameter <italic>P</italic><sub><italic>m</italic></sub> did not change significantly with DCMU and heat treatment (Figure <xref ref-type="fig" rid="F4">4A</xref>). Steady-state P700<sup>&#x0002B;</sup> significantly increased by &#x0007E;45% upon DCMU treatment (at 25&#x000B0;C, Figure <xref ref-type="fig" rid="F4">4B</xref>), indicating elevated P700<sup>&#x0002B;</sup>. In the presence of DCMU, heat treatment caused a reversible decline in steady-state P700<sup>&#x0002B;</sup> by &#x0007E;15%; however these changes were not statistically significant as compared to non-heat treated but DCMU treated samples.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Relative changes in P700 kinetics signals in the coral <italic>P. decussata</italic> over the course of heat treatment and recovery period, in the presence of DCMU. <italic>P</italic><sub><italic>m</italic></sub> <bold>(A)</bold>, and initial steady-state level of P700<sup>&#x0002B;</sup> <bold>(B)</bold> were recorded on the same dark-adapted samples, at the same time point. Control, black column; heat treatment, red column and recovery, blue column. Gray bars show the signal in the absence of DCMU, normalized to 1, to show relative changes caused by the treatments. Signals were recorded on the same samples under the same temperature treatment as described for Figure. Statistically significant differences between &#x02212;DCMU and &#x0002B;DCMU control samples (<italic>p</italic> &#x0003C; 0.05) are shown with asterisk. Error bars are standard errors of mean (SEM), <italic>n</italic> &#x0003D; 3.</p></caption>
<graphic xlink:href="fmars-04-00269-g0004.tif"/>
</fig>
</sec>
<sec>
<title>P700 kinetics after chemically blocking calvin-benson cycle</title>
<p>We further investigated whether the changes in P700<sup>&#x0002B;</sup> redox state could be related to the operation of Calvin-Benson cycle. This was performed by incubating coral fragments with the Calvin-Benson cycle inhibitor glycolaldehyde (GA). GA induced a decrease in the steady-state P700<sup>&#x0002B;</sup> levels and P700 kinetics area at the initial time points; upon prolonged incubation the P700 kinetics area completely disappeared (Figure <xref ref-type="fig" rid="F5">5</xref>), indicating that GA inhibition of Calvin-Benson cycle perturbs the photosynthetic pathways in a similar manner as heat stress, i.e., more reduced state of PSI and decreased electron flow from PSII to PSI; however the effect of chemical inhibition by GA was more pronounced than that of the acute heat stress (see Discussion).</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>Effect of the Calvin-Benson cycle inhibitor glycolaldehyde (GA) on P700 kinetics. Control nubbins were measured in the absence of the inhibitor (&#x02212;GA, black line), then the same nubbins were incubated with 5 mM GA (&#x0002B;GA) and P700 measurements were performed at different time points: 50 min, red line; 2 h, blue line; 4.5 h, orange line. The same illumination protocol was applied as shown and described in Figure <xref ref-type="fig" rid="F1">1</xref>. P700<sup>&#x0002B;</sup> signal intensity is shown in relative units as [P700<sup>&#x0002B;</sup>] (relative).</p></caption>
<graphic xlink:href="fmars-04-00269-g0005.tif"/>
</fig>
</sec>
<sec>
<title>Fast-repetition rate fluorescence (FRRf) and fast induction curve (OJIP) parameters under heat stress</title>
<p>In order to investigate the PSII electron transfer kinetics under heat stress alongside PSI, under the same conditions as for the P700 measurements, fast fluorescence induction-relaxation chlorophyll fluorescence measurements were performed. Small changes could be observed in fluorescence kinetics during the saturation phase of the FRRf signal in heat stressed relative to control fragments (Figure <xref ref-type="fig" rid="F6">6</xref>); the calculated parameters, maximum quantum efficiency of PSII (<italic>F</italic><sub><italic>v</italic></sub>/<italic>F</italic><sub><italic>m</italic></sub>) (Figure <xref ref-type="fig" rid="F7">7A</xref>) and functional absorption cross-section (&#x003C3;<sub><italic>PSII</italic></sub>) (Figure <xref ref-type="fig" rid="F7">7B</xref>), did not change significantly, indicative of unaltered inherent properties of PSII reaction centers. In contrast, more substantial changes were observed during the relaxation phase of the fluorescence kinetics (Figure <xref ref-type="fig" rid="F6">6</xref>), as the relative oxidation state of the PQ pool significantly declined (i.e., the PQ pool became more reduced) (Figure <xref ref-type="fig" rid="F7">7C</xref>). Consistent with this, although the forward electron transfer time constant component &#x003C4;<sub>1</sub> increased upon heating, this change was not significant (Figure <xref ref-type="fig" rid="F7">7D</xref>), whereas the longer relaxation time constant component, &#x003C4;<sub>2</sub> increased significantly upon heat stress and partially recovered (Figure <xref ref-type="fig" rid="F7">7E</xref>), indicative of slowing electron transport rates between the PQ pool and PSI. This effect was largely reversed after recovery at 25&#x000B0;C.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Representative FRRf saturation-relaxation fluorescence traces of <italic>P. decussata</italic>. Measurements were done at 25&#x000B0;C (control, black line), at 33&#x000B0;C (heat, red line), and 25&#x000B0;C after the heat treatment (recovery, blue line). Saturation sequence is displayed on a linear timescale, whereas relaxation sequence is on a log<sub>10</sub> timescale (the two sequences are visually separated with a dashed line). Y axis represents fluorescence yield.</p></caption>
<graphic xlink:href="fmars-04-00269-g0006.tif"/>
</fig>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Calculated FRRf parameters of <italic>P. decussata</italic>. <italic>F</italic><sub><italic>v</italic></sub>/<italic>F</italic><sub><italic>m</italic></sub> <bold>(A)</bold>, functional absorption cross-section of PSII <bold>(B)</bold>, relative oxidation state of the plastoquinone pool (PQ<sub>ox</sub>) <bold>(C)</bold>, &#x003C4;<sub>1</sub> <bold>(D)</bold>, and &#x003C4;<sub>2</sub> <bold>(E)</bold>. Measurements were done at 25&#x000B0;C (control, black line), at 33&#x000B0;C (heat, red line) and 25&#x000B0;C after the heat treatment (recovery, blue line). Representative FRRf traces are shown in Figure <xref ref-type="fig" rid="F6">6</xref>. Statistically significant differences are shown with asterisks (<italic>p</italic> &#x0003C; 0.05). Error bars are standard errors of mean (SEM), <italic>n</italic> &#x0003D; 3.</p></caption>
<graphic xlink:href="fmars-04-00269-g0007.tif"/>
</fig>
<p>Additional multi-phasic fast induction chlorophyll fluorescence measurements were performed to reveal the relative changes in the various phases of fluorescence rise during a multiple turnover saturating flash (Figure <xref ref-type="fig" rid="F8">8</xref>). In the double normalized curves, <italic>F</italic><sub><italic>o</italic></sub> (the &#x0201C;O&#x0201D; phase) is set to 0, whereas <italic>F</italic><sub><italic>m</italic></sub> (the &#x0201C;P&#x0201D; phase) is set to 1 to display relative changes. &#x0201C;Control&#x0201D; curve shows a typical OJIP rise of corals, with a distinguishable OJ phase (10<sup>&#x02212;5</sup> to 2 &#x000D7; 10<sup>&#x02212;3</sup> s) representing the photochemical phase of Q<sub>A</sub> reduction to <inline-formula><mml:math id="M1"><mml:msubsup><mml:mrow><mml:mtext>Q</mml:mtext></mml:mrow><mml:mrow><mml:mtext>A</mml:mtext></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> and the JI (2 &#x000D7; 10<sup>&#x02212;3</sup> to 10<sup>&#x02212;1</sup> s) and IP (10<sup>&#x02212;1</sup> to 2 &#x000D7; 10<sup>0</sup> s) phases representing the thermal phase of fluorescence induction (e.g., Hill et al., <xref ref-type="bibr" rid="B17">2004a</xref>). In heat treated samples, the fluorescence rise is almost complete already at the J phase, whereas the JIP phase largely disappeared. Under recovery conditions, the OJIP fluorescence induction curve regained its original characteristics of control samples, but the recovery was only partial.</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p>Fast fluorescence induction (OJIP) curves. Measurements were done at 25&#x000B0;C (control, black line), at 33&#x000B0;C (heat, red line), and 25&#x000B0;C after the heat treatment (recovery, blue line). Illumination was applied from the beginning of data recording; the dashed line represents the timepoint when the illumination was turned off. Fluorescence traces are double-normalized (<italic>F</italic><sub><italic>o</italic></sub> set to 0 and <italic>F</italic><sub><italic>m</italic></sub> to 1) in order to represent relative changes. Error bars are standard errors of mean (SEM), <italic>n</italic> &#x0003D; 3.</p></caption>
<graphic xlink:href="fmars-04-00269-g0008.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Photosynthetic performance of reef-building corals plays a key role in determining their ecological success under normal growth conditions as well as in response to transient stressors (Warner et al., <xref ref-type="bibr" rid="B63">2002</xref>; Anthony et al., <xref ref-type="bibr" rid="B3">2007</xref>). Photobiological performance and photosynthetic energy budgets of <italic>Symbiodinium</italic> in hospite have been characterized and reviewed in several studies (Brodersen et al., <xref ref-type="bibr" rid="B5">2014</xref>; Roth, <xref ref-type="bibr" rid="B50">2014</xref>; Warner and Suggett, <xref ref-type="bibr" rid="B66">2016</xref>). However, surprisingly, the available data regarding the fundamental intersystem PSII-PSI electron transport properties in corals is scarce. While changes in PSII activity represent one of the best known indicators of heat stress sensitivity (Warner et al., <xref ref-type="bibr" rid="B64">1999</xref>; Hill et al., <xref ref-type="bibr" rid="B20">2004b</xref>), the loss of PSII quantum efficiency, deduced from variable Chl fluorescence measurements, usually manifests itself under severe prolonged heat impacts which lead to extensive loss of photosynthetic performance (e.g., Hill et al., <xref ref-type="bibr" rid="B16">2012</xref>). Intuitively, severe inhibition of PSII activity should be preceded by more subtle temperature perturbations of the electron transport flow through the whole photosynthetic machinery, lowering photosynthetic performance. Such decline in photosynthetic activity, if persistent, may lead to a <italic>gradual deterioration of the photosynthetic performance of the endosymbiont algae without impacting the most characteristic indicator of the stress, the decline in PSII quantum efficiency</italic>. Unfortunately, the PSII quantum efficiency is generally used as the most universal (and in most cases the only) indicator of the stress presence in corals. Earlier studies (Hoogenboom et al., <xref ref-type="bibr" rid="B23">2012</xref>) indicated that PSII is a more vulnerable component to heat stress than PSI, which is in agreement with our finding that forward electron transfer kinetics slow down (Figure <xref ref-type="fig" rid="F7">7</xref>). However, the main aim of our approach was to ascertain whether using a single measurement of P700 redox kinetics yields information about both active PSII and PSI, possibly complementing the performance indicators obtained by more commonly applied chlorophyll fluorescence measurements.</p>
<p>The fact that acute heat stress caused remarkable changes in P700 kinetics, the steady-state level of P700<sup>&#x0002B;</sup> and the P700 kinetics area suggests that electron flow from PSII has a strong impact on the redox state of P700<sup>&#x0002B;</sup>, similarly to the situation in higher plants (Oguchi et al., <xref ref-type="bibr" rid="B42">2011</xref>; Jia et al., <xref ref-type="bibr" rid="B25">2014</xref>). This is corroborated with the observations that the P700 kinetics area completely disappeared in the presence of DCMU (Figure <xref ref-type="fig" rid="F3">3</xref>) and the steady state P700<sup>&#x0002B;</sup> increased, as the linear electron flow from PSII reducing P700<sup>&#x0002B;</sup> has completely stopped. When heat stress was applied in the presence of DCMU, the steady-state P700<sup>&#x0002B;</sup> decreased, although to a much lesser extent as compared to the heat treatment in the absence of inhibitor (cf. Figures <xref ref-type="fig" rid="F2">2</xref>, <xref ref-type="fig" rid="F4">4</xref>). The fact that the steady-state P700<sup>&#x0002B;</sup> level drops even in the presence of DCMU (when linear electron flow is blocked) indicates that alternative electron transport pathways might have been initiated under heat stress, the existence of which has been shown in <italic>Symbiodinium</italic> (Reynolds et al., <xref ref-type="bibr" rid="B48">2008</xref>; Roberty et al., <xref ref-type="bibr" rid="B49">2014</xref>; Aihara et al., <xref ref-type="bibr" rid="B1">2016</xref>). The diminished response of steady-state P700<sup>&#x0002B;</sup> under heat stress, when DCMU was applied might be due to the disturbance of the redox poise of P700 by DCMU (Fan et al., <xref ref-type="bibr" rid="B9">2016a</xref>). Our chlorophyll fluorescence measurements indicated that under moderate heat stress conditions, maximum PSII quantum efficiency and the functional cross-section of PSII were marginally affected by the heat stress. Instead, kinetic parameters of the photosynthetic electron transport responded to a higher degree. In plants, &#x003C4;<sub>1</sub> reflects electron transport from Q<sub>A</sub> to PQ, whereas &#x003C4;<sub>2</sub> reflects a slower electron transfer component from PQ to PSI (Osmond et al., <xref ref-type="bibr" rid="B43">2017</xref>). However, these electron transfer steps are uncharacterised in detail for corals; as such, here we refer to &#x003C4;<sub>1</sub> as the fast component of electron transfer, an inherent property of PSII, which is largely unchanged under acute heat stress. In contrast, &#x003C4;<sub>2</sub> is most likely closely related to the reduction level of the PQ pool (and possibly the electron transfer steps beyond PQ pool, indicated by the large time constant values), which is related to the phenomenon that the Q<sub>B</sub> site is occupied by an electron that is unable to proceed to the PQ pool, because an oxidized PQ molecule from the PQ pool is unavailable. This is corroborated by the calculated oxidized portion of the PQ pool, which strongly declined upon heating. The concentration of oxidized PQ decreases when the PQ pool is more reduced due to limitation of electron transport at the acceptor side of PSI. This is in agreement with earlier findings that persistent reduction of the PQ pool was more prevalent under heat stress or bleaching conditions (Jones and Hoegh-Guldberg, <xref ref-type="bibr" rid="B26">2001</xref>; Hill et al., <xref ref-type="bibr" rid="B17">2004a</xref>).</p>
<p>This interpretation is further corroborated by the finding that when active electron flow from PSII to PSI is impaired under heat stress, maximal fluorescence of the fast induction (OJIP) curves occurs already at the J level, &#x0007E;2 ms, with only a small thermal phase (JIP) present. Together these measurements indicate that the maximal photochemical capacity of PSII reaction centers is not affected (unchanged <italic>F</italic><sub><italic>v</italic></sub><italic>/F</italic><sub><italic>m</italic></sub> and presence of photochemical OJ phase) under moderate heat stress, whereas the subsequent electron transfer steps became significantly impaired probably due to the heat-induced reduction of the PQ pool, as has been shown for higher plants (T&#x000F3;th et al., <xref ref-type="bibr" rid="B59">2007</xref>). Taken together, our observations suggest that when referring to the &#x0201C;active PSII electron transfer&#x0201D; involved in reducing P700<sup>&#x0002B;</sup>, the critical steps appear to be the efficiency of electron transfer after the primary acceptor, <inline-formula><mml:math id="M2"><mml:msubsup><mml:mrow><mml:mtext>Q</mml:mtext></mml:mrow><mml:mrow><mml:mtext>A</mml:mtext></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, rather than the actual photochemical activity of PSII reaction centers (represented by the presence of OJ phase). While <italic>F</italic><sub><italic>v</italic></sub><italic>/F</italic><sub><italic>m</italic></sub> measurements indicated little stress, the simultaneous measurements of PSII to PSI electron transfer rates clearly indicated severe impacts on the PSII-PSI intersystem electron flow, i.e. the forward electron transfer from Q<sub>A</sub> to Q<sub>B</sub> and the PQ pool. Steady-state P700<sup>&#x0002B;</sup> levels recorded at 820 nm, in the presence of weak FR light (740 nm) were very sensitive to heat-induced changes, indicating that under acute heat stress there is less P700<sup>&#x0002B;</sup> under continuous weak FR light, possibly due to enhanced electron pressure, which may originate from non-linear electron flow pathways.</p>
<p>The P700 kinetics signal underwent similar changes to heat stress when chemical inhibition of the Calvin-Benson cycle was applied. Glycolaldehyde (GA) is a known inhibitor of Calvin-Benson cycle in corals (Bhagooli, <xref ref-type="bibr" rid="B4">2013</xref>; Hill et al., <xref ref-type="bibr" rid="B21">2014</xref>) and earlier applications have demonstrated that under conditions when CO<sub>2</sub> fixation is impaired by chemical inhibition (Hill et al., <xref ref-type="bibr" rid="B21">2014</xref>) or by decreased concentrations of dissolved inorganic carbon (Oakley et al., <xref ref-type="bibr" rid="B41">2014</xref>), linear electron flow of photosynthesis is downregulated even at ambient temperatures in the absence of heat stress (Hill et al., <xref ref-type="bibr" rid="B21">2014</xref>; Oakley et al., <xref ref-type="bibr" rid="B41">2014</xref>). Such a response is in agreement with the current study, where P700 kinetics area (bounded by the horizontal line corresponding to steady-state illumination with far-red light and the dipping curve of P700<sup>&#x0002B;</sup> signal upon application of a saturating flash, representing the delivery of PSII electrons to PSI), completely disappears in the presence of GA, but in the absence of heat stress (Figure <xref ref-type="fig" rid="F5">5</xref>), in agreement with earlier findings on decreased oxygen evolution in corals as a result of GA treatment (Hill et al., <xref ref-type="bibr" rid="B21">2014</xref>). In parallel with the loss of P700 kinetics area, the initial steady-state P700 level decreases, possibly because inhibition of Calvin-Benson cycle leads to elevated NADPH and ferredoxin levels that cause over-reduction of PQ pool through cyclic electron transport pathway(s) and blockage of the PSI acceptor side. This in fact leads to more reduced P700 (lower steady-state P700<sup>&#x0002B;</sup>) and slower electron transfer rates (smaller P700 kinetics area). Therefore, GA treatment alone mimics the heat-induced changes in photosynthetic electron flow, but the acute heat stress applied in the current study may cause only partial inactivation of Calvin cycle (P700 kinetics area not completely lost), which can be recovered during the applied recovery period at 26&#x000B0;C. As for all dinoflagellates, <italic>Symbiodinium</italic> sp. carry a type II Rubisco (Whitney et al., <xref ref-type="bibr" rid="B67">1995</xref>) that is considered generally more heat sensitive than type I Rubisco (Leggat et al., <xref ref-type="bibr" rid="B36">2004</xref>). The same heat stress assay employed here was applied in earlier studies to cause partial inactivation of Rubisco in <italic>Symbiodinium</italic> (Lilley et al., <xref ref-type="bibr" rid="B38">2010</xref>), which may lead to a decrease in relative oxidation level of PQ and thus electron flow back-pressure on PSII (Hill et al., <xref ref-type="bibr" rid="B21">2014</xref>).</p>
<p>In summary, we suggest that under conditions when the chlorophyll fluorescence signals may be complex to interpret i.e., due to the vertical light heterogeneity in coral tissues (Wangpraseurt et al., <xref ref-type="bibr" rid="B62">2012</xref>), P700 kinetics measurements performed in the NIR region may serve as a whole tissue marker for operation of both PSII and PSI and a non-invasive stress indicator of photosynthetic efficiency of coral endosymbionts (the combination of P700 and chlorophyll fluorescence methods to understand intersystem PSII-PSI electron transfer properties are shown in Figure <xref ref-type="supplementary-material" rid="SM1">S2</xref>). How these current findings under transient and rapid (acute) heat stress ultimately apply to more prolonged heat stress events that drive coral bleaching in nature will be an important next question to investigate, as is, for example, whether the transient perturbation of intersystem electron flow, represented by the P700 kinetics signal, provides a sensitive marker of photosynthetic activity under other sub-lethal stress conditions as well. It has to be noted that during prolonged stress exposure, the P700 signal might also be influenced by bio-optical/physiological alterations of coral tissues (e.g., symbiont expulsion, changes in pigment concentrations across the tissue) that need to be investigated further. Physiological phenomena of the coral holobiont such as tentacle movement and/or contraction could have occurred in the experimental timeframe applied in the current study, and it may have influenced the cross-section and thus light availability within the coral tissues. However, we suggest that such impacts are minimal, because the functional absorption cross-section of PSII was found unchanged (Figure <xref ref-type="fig" rid="F7">7B</xref>). It also remains to be investigated whether P700 redox signal can be assigned as a functional trait, as it has been shown that chlorophyll fluorescence parameters can be associated with the different <italic>Symbiodinium</italic> genetic types as photobiological traits (Suggett et al., <xref ref-type="bibr" rid="B56">2015</xref>; Goyen et al., <xref ref-type="bibr" rid="B13">2017</xref>).</p>
<p>Finally, our results are in agreement with earlier observations (Jones et al., <xref ref-type="bibr" rid="B27">1998</xref>; Lilley et al., <xref ref-type="bibr" rid="B38">2010</xref>; Bhagooli, <xref ref-type="bibr" rid="B4">2013</xref>; Hill et al., <xref ref-type="bibr" rid="B21">2014</xref>) that a general weakness in corals (potentially leading to coral bleaching) could be the heat sensitivity of the Type II Rubisco, which causes partial inhibition of the Calvin-Benson cycle and CO<sub>2</sub> fixation, although the direct effect of acute heat stress on the Rubisco and on the whole photosynthetic productivity remains to be investigated. Under these circumstances, as indicated here, there may be side effects on cyclic electron transport and the Mehler-Ascorbate-Peroxidase (MAP) pathway. Recent works (Reynolds et al., <xref ref-type="bibr" rid="B48">2008</xref>; Roberty et al., <xref ref-type="bibr" rid="B49">2014</xref>; Aihara et al., <xref ref-type="bibr" rid="B1">2016</xref>) have indicated the possibility that singlet oxygen production is generated when PQ pool is reduced, i.e., the relative size of oxidized PQ pool is smaller (and thus charge recombination in PSII reaction centers is promoted), which may be a primary factor in coral bleaching (Vass, <xref ref-type="bibr" rid="B60">2012</xref>; Rehman et al., <xref ref-type="bibr" rid="B47">2016</xref>). Nevertheless, these effects have to be documented individually in corals, where it is known that there are varied responses to similar acute thermal stress scenarios (Downs et al., <xref ref-type="bibr" rid="B7">2013</xref>; Gardner et al., <xref ref-type="bibr" rid="B11">2017</xref>). It is entirely possible that despite the &#x0201C;Achilles Heel&#x0201D; of a heat sensitive Rubisco, different <italic>Symbiodinium</italic> types have evolved different strategies to cope with this problem, and that the diversity of these strategies account for the different heat sensitivities of corals to coral bleaching.</p>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>MS, AL, IV, and WC planned the study. MS and AZ collected the data. MS, AL, AZ, IV, LS, DS, BO, and WC interpreted and analyzed the data. PR and WC provided consumables, reagents and tools. All authors contributed to drafting, critical commenting the manuscript and approved it for publication.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack><p>The authors thank Dr. Zbigniew Kolber for his advice on LIFT-FRRf data analysis, Paul Brooks, Graeme Poleweski and David Hughes for maintenance of UTS coral tanks, Drs. Ross Lilley, Mathieu Pernice, Dimitri Tolleter and Duncan Fitzpatrick for fruitful discussions.</p>
</ack>
<sec sec-type="supplementary-material" id="s6">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="http://journal.frontiersin.org/article/10.3389/fmars.2017.00269/full#supplementary-material">http://journal.frontiersin.org/article/10.3389/fmars.2017.00269/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="DataSheet1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Aihara</surname> <given-names>Y.</given-names></name> <name><surname>Takahashi</surname> <given-names>S.</given-names></name> <name><surname>Minagawa</surname> <given-names>J.</given-names></name></person-group> (<year>2016</year>). <article-title>Heat induction of cyclic electron flow around photosystem I in the symbiotic dinoflagellate Symbiodinium</article-title>. <source>Plant physiol.</source> <volume>171</volume>, <fpage>522</fpage>&#x02013;<lpage>529</lpage>. <pub-id pub-id-type="doi">10.1104/pp.15.01886</pub-id><pub-id pub-id-type="pmid">26951432</pub-id></citation></ref>
<ref id="B2">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ainsworth</surname> <given-names>T. D.</given-names></name> <name><surname>Thurber</surname> <given-names>R. V.</given-names></name> <name><surname>Gates</surname> <given-names>R. D.</given-names></name></person-group> (<year>2010</year>). <article-title>The future of coral reefs: a microbial perspective</article-title>. <source>Trends Ecol. Evol.</source> <volume>25</volume>, <fpage>233</fpage>&#x02013;<lpage>240</lpage>. <pub-id pub-id-type="doi">10.1016/j.tree.2009.11.001</pub-id><pub-id pub-id-type="pmid">20006405</pub-id></citation></ref>
<ref id="B3">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Anthony</surname> <given-names>K.</given-names></name> <name><surname>Connolly</surname> <given-names>S. R.</given-names></name> <name><surname>Hoegh-Guldberg</surname> <given-names>O.</given-names></name></person-group> (<year>2007</year>). <article-title>Bleaching, energetics, and coral mortality risk: effects of temperature, light, and sediment regime</article-title>. <source>Limnol. Oceanogr.</source> <volume>52</volume>, <fpage>716</fpage>&#x02013;<lpage>726</lpage>. <pub-id pub-id-type="doi">10.4319/lo.2007.52.2.0716</pub-id></citation></ref>
<ref id="B4">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhagooli</surname> <given-names>R.</given-names></name></person-group> (<year>2013</year>). <article-title>Inhibition of Calvin&#x02013;Benson cycle suppresses the repair of photosystem II in Symbiodinium: implications for coral bleaching</article-title>. <source>Hydrobiologia</source> <volume>714</volume>, <fpage>183</fpage>&#x02013;<lpage>190</lpage>. <pub-id pub-id-type="doi">10.1007/s10750-013-1535-4</pub-id></citation></ref>
<ref id="B5">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brodersen</surname> <given-names>K. E.</given-names></name> <name><surname>Lichtenberg</surname> <given-names>M.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name> <name><surname>Wangpraseurt</surname> <given-names>D.</given-names></name></person-group> (<year>2014</year>). <article-title>Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals</article-title>. <source>J. R. Soc. Int.</source> <volume>11</volume>:<fpage>20130997</fpage>. <pub-id pub-id-type="doi">10.1098/rsif.2013.0997</pub-id></citation></ref>
<ref id="B6">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cardol</surname> <given-names>P.</given-names></name> <name><surname>Forti</surname> <given-names>G.</given-names></name> <name><surname>Finazzi</surname> <given-names>G.</given-names></name></person-group> (<year>2011</year>). <article-title>Regulation of electron transport in microalgae</article-title>. <source>Biochim. Biophys. Acta</source> <volume>1807</volume>, <fpage>912</fpage>&#x02013;<lpage>918</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbabio.2010.12.004</pub-id><pub-id pub-id-type="pmid">21167125</pub-id></citation></ref>
<ref id="B7">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Downs</surname> <given-names>C.</given-names></name> <name><surname>McDougall</surname> <given-names>K. E.</given-names></name> <name><surname>Woodley</surname> <given-names>C. M.</given-names></name> <name><surname>Fauth</surname> <given-names>J. E.</given-names></name> <name><surname>Richmond</surname> <given-names>R. H.</given-names></name> <name><surname>Kushmaro</surname> <given-names>A.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>Heat-stress and light-stress induce different cellular pathologies in the symbiotic dinoflagellate during coral bleaching</article-title>. <source>PLoS ONE</source> <volume>8</volume>:<fpage>e77173</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0077173</pub-id><pub-id pub-id-type="pmid">24324575</pub-id></citation></ref>
<ref id="B8">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Enr&#x000ED;quez</surname> <given-names>S.</given-names></name> <name><surname>M&#x000E9;ndez</surname> <given-names>E. R.</given-names></name> <name><surname>Iglesias-Prieto</surname> <given-names>R.</given-names></name></person-group> (<year>2005</year>). <article-title>Multiple scattering on coral skeletons enhances light absorption by symbiotic algae</article-title>. <source>Limnol. Oceanogr.</source> <volume>50</volume>, <fpage>1025</fpage>&#x02013;<lpage>1032</lpage>. <pub-id pub-id-type="doi">10.4319/lo.2005.50.4.1025</pub-id></citation></ref>
<ref id="B9">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fan</surname> <given-names>D.-Y.</given-names></name> <name><surname>Fitzpatrick</surname> <given-names>D.</given-names></name> <name><surname>Oguchi</surname> <given-names>R.</given-names></name> <name><surname>Ma</surname> <given-names>W.</given-names></name> <name><surname>Kou</surname> <given-names>J.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name></person-group> (<year>2016a</year>). <article-title>Obstacles in the quantification of the cyclic electron flux around Photosystem I in leaves of C3 plants</article-title>. <source>Photosyn. Res.</source> <volume>129</volume>, <fpage>239</fpage>&#x02013;<lpage>251</lpage>. <pub-id pub-id-type="doi">10.1007/s11120-016-0223-4</pub-id><pub-id pub-id-type="pmid">26846653</pub-id></citation></ref>
<ref id="B10">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Fan</surname> <given-names>D.-Y.</given-names></name> <name><surname>Ye</surname> <given-names>Z.-P.</given-names></name> <name><surname>Wang</surname> <given-names>S.-C.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name></person-group> (<year>2016b</year>). <article-title>Multiple roles of oxygen in the photoinactivation and dynamic repair of Photosystem II in spinach leaves</article-title>. <source>Photosyn. Res.</source> <volume>127</volume>, <fpage>307</fpage>&#x02013;<lpage>319</lpage>. <pub-id pub-id-type="doi">10.1007/s11120-015-0185-y</pub-id><pub-id pub-id-type="pmid">26297354</pub-id></citation></ref>
<ref id="B11">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gardner</surname> <given-names>S. G.</given-names></name> <name><surname>Raina</surname> <given-names>J.-B.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>Petrou</surname> <given-names>K.</given-names></name></person-group> (<year>2017</year>). <article-title>Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress</article-title>. <source>J. Exp. Biol.</source> <volume>220</volume>, <fpage>1787</fpage>&#x02013;<lpage>1791</lpage>. <pub-id pub-id-type="doi">10.1242/jeb.153049</pub-id><pub-id pub-id-type="pmid">28275004</pub-id></citation></ref>
<ref id="B12">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gorbunov</surname> <given-names>M. Y.</given-names></name> <name><surname>Kolber</surname> <given-names>Z. S.</given-names></name> <name><surname>Lesser</surname> <given-names>M. P.</given-names></name> <name><surname>Falkowski</surname> <given-names>P. G.</given-names></name></person-group> (<year>2001</year>). <article-title>Photosynthesis and photoprotection in symbiotic corals</article-title>. <source>Limnol. Oceanogr.</source> <volume>46</volume>, <fpage>75</fpage>&#x02013;<lpage>85</lpage>. <pub-id pub-id-type="doi">10.4319/lo.2001.46.1.0075</pub-id></citation></ref>
<ref id="B13">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Goyen</surname> <given-names>S.</given-names></name> <name><surname>Pernice</surname> <given-names>M.</given-names></name> <name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>Suggett</surname> <given-names>D. J.</given-names></name></person-group> (<year>2017</year>). <article-title>A molecular physiology basis for functional diversity of hydrogen peroxide production amongst <italic>Symbiodinium</italic> spp. (Dinophyceae)</article-title>. <source>Mar. Biol.</source> <volume>164</volume>:<fpage>46</fpage>. <pub-id pub-id-type="doi">10.1007/s00227-017-3073-5</pub-id></citation></ref>
<ref id="B14">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hennige</surname> <given-names>S. J.</given-names></name> <name><surname>Smith</surname> <given-names>D. J.</given-names></name> <name><surname>Perkins</surname> <given-names>R.</given-names></name> <name><surname>Consalvey</surname> <given-names>M.</given-names></name> <name><surname>Paterson</surname> <given-names>D. M.</given-names></name> <name><surname>Suggett</surname> <given-names>D. J.</given-names></name></person-group> (<year>2008</year>). <article-title>Photoacclimation, growth and distribution of massive coral species in clear and turbid waters</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>369</volume>, <fpage>77</fpage>&#x02013;<lpage>88</lpage>. <pub-id pub-id-type="doi">10.3354/meps07612</pub-id></citation></ref>
<ref id="B15">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Brown</surname> <given-names>C. M.</given-names></name> <name><surname>DeZeeuw</surname> <given-names>K.</given-names></name> <name><surname>Campbell</surname> <given-names>D. A.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2011</year>). <article-title>Increased rate of D1 repair in coral symbionts during bleaching is insufficient to counter accelerated photo-inactivation</article-title>. <source>Limnol. Oceanogr.</source> <volume>56</volume>, <fpage>139</fpage>&#x02013;<lpage>146</lpage>. <pub-id pub-id-type="doi">10.4319/lo.2011.56.1.0139</pub-id></citation></ref>
<ref id="B16">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W. D.</given-names></name> <name><surname>Prasil</surname> <given-names>O.</given-names></name> <name><surname>Kramer</surname> <given-names>D. M.</given-names></name> <name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>Kumar</surname> <given-names>V.</given-names></name> <etal/></person-group>. (<year>2012</year>). <article-title>Light-induced dissociation of antenna complexes in the symbionts of scleractinian corals correlates with sensitivity to coral bleaching</article-title>. <source>Coral Reefs</source> <volume>31</volume>, <fpage>963</fpage>&#x02013;<lpage>975</lpage>. <pub-id pub-id-type="doi">10.1007/s00338-012-0914-z</pub-id></citation></ref>
<ref id="B17">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>Frankart</surname> <given-names>C.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2004a</year>). <article-title>Loss of functional Photosystem II reaction centres in Zooxanthellae of corals exposed to bleaching conditions: using fluorescence rise kinetics</article-title>. <source>Photosyn. Res.</source> <volume>82</volume>, <fpage>59</fpage>&#x02013;<lpage>72</lpage>. <pub-id pub-id-type="doi">10.1023/B:PRES.0000040444.41179.09</pub-id><pub-id pub-id-type="pmid">16228613</pub-id></citation></ref>
<ref id="B18">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2005</year>). <article-title>Diel and seasonal changes in fluorescence rise kinetics of three scleractinian corals</article-title>. <source>Funct. Plant Biol.</source> <volume>32</volume>, <fpage>549</fpage>&#x02013;<lpage>559</lpage>. <pub-id pub-id-type="doi">10.1071/FP05017</pub-id></citation></ref>
<ref id="B19">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2008</year>). <article-title>Dark-induced reduction of the plastoquinone pool in zooxanthellae of scleractinian corals and implications for measurements of chlorophyll a fluorescence</article-title>. <source>Symbiosis</source> <volume>46</volume>, <fpage>45</fpage>&#x02013;<lpage>56</lpage>.</citation></ref>
<ref id="B20">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Schreiber</surname> <given-names>U.</given-names></name> <name><surname>Gademann</surname> <given-names>R.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W. D.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2004b</year>). <article-title>Spatial heterogeneity of photosynthesis and the effect of temperature-induced bleaching conditions in three species of corals</article-title>. <source>Mar. Biol.</source> <volume>144</volume>, <fpage>633</fpage>&#x02013;<lpage>640</lpage>. <pub-id pub-id-type="doi">10.1007/s00227-003-1226-1</pub-id></citation></ref>
<ref id="B21">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>ur Rehman</surname> <given-names>A.</given-names></name> <name><surname>Vass</surname> <given-names>I.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name></person-group> (<year>2014</year>). <article-title>Inhibition of photosynthetic CO<sub>2</sub> fixation in the coral Pocillopora damicornis and its relationship to thermal bleaching</article-title>. <source>J. Exp. Biol.</source> <volume>217</volume>, <fpage>2150</fpage>&#x02013;<lpage>2162</lpage>. <pub-id pub-id-type="doi">10.1242/jeb.100578</pub-id><pub-id pub-id-type="pmid">24675559</pub-id></citation></ref>
<ref id="B22">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Takahashi</surname> <given-names>S.</given-names></name></person-group> (<year>2014</year>). <article-title>Photosystem II recovery in the presence and absence of chloroplast protein repair in the symbionts of corals exposed to bleaching conditions</article-title>. <source>Coral Reefs</source> <volume>33</volume>, <fpage>1101</fpage>&#x02013;<lpage>1111</lpage>. <pub-id pub-id-type="doi">10.1007/s00338-014-1188-4</pub-id></citation></ref>
<ref id="B23">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hoogenboom</surname> <given-names>M. O.</given-names></name> <name><surname>Campbell</surname> <given-names>D. A.</given-names></name> <name><surname>Beraud</surname> <given-names>E.</given-names></name> <name><surname>Dezeeuw</surname> <given-names>K.</given-names></name> <name><surname>Ferrier-Pages</surname> <given-names>C.</given-names></name></person-group> (<year>2012</year>). <article-title>Effects of light, food availability and temperature stress on the function of photosystem II and photosystem I of coral symbionts</article-title>. <source>PLoS ONE</source> <volume>7</volume>:<fpage>e30167</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0030167</pub-id><pub-id pub-id-type="pmid">22253915</pub-id></citation></ref>
<ref id="B24">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hu</surname> <given-names>Y.-Y.</given-names></name> <name><surname>Fan</surname> <given-names>D.-Y.</given-names></name> <name><surname>Losciale</surname> <given-names>P.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name> <name><surname>Zhang</surname> <given-names>W.-F.</given-names></name></person-group> (<year>2013</year>). <article-title>Whole-tissue determination of the rate coefficients of photoinactivation and repair of photosystem II in cotton leaf discs based on flash-induced P700 redox kinetics</article-title>. <source>Photosyn. Res.</source> <volume>117</volume>, <fpage>517</fpage>&#x02013;<lpage>528</lpage>. <pub-id pub-id-type="doi">10.1007/s11120-013-9822-5</pub-id><pub-id pub-id-type="pmid">23589088</pub-id></citation></ref>
<ref id="B25">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jia</surname> <given-names>H.</given-names></name> <name><surname>Dwyer</surname> <given-names>S. A.</given-names></name> <name><surname>Fan</surname> <given-names>D.-Y.</given-names></name> <name><surname>Han</surname> <given-names>Y.</given-names></name> <name><surname>Badger</surname> <given-names>M. R.</given-names></name> <name><surname>von Caemmerer</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2014</year>). <article-title>A novel P700 redox kinetics probe for rapid, non-intrusive and whole-tissue determination of photosystem II functionality, and the stoichiometry of the two photosystems <italic>in vivo</italic></article-title>. <source>Physiol. Plant</source> <volume>152</volume>, <fpage>403</fpage>&#x02013;<lpage>413</lpage>. <pub-id pub-id-type="doi">10.1111/ppl.12235</pub-id><pub-id pub-id-type="pmid">24862879</pub-id></citation></ref>
<ref id="B26">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jones</surname> <given-names>R.</given-names></name> <name><surname>Hoegh-Guldberg</surname> <given-names>O.</given-names></name></person-group> (<year>2001</year>). <article-title>Diurnal changes in the photochemical efficiency of the symbiotic dinoflagellates (Dinophyceae) of corals: photoprotection, photoinactivation and the relationship to coral bleaching</article-title>. <source>Plant Cell Environ.</source> <volume>24</volume>, <fpage>89</fpage>&#x02013;<lpage>99</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-3040.2001.00648.x</pub-id></citation></ref>
<ref id="B27">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jones</surname> <given-names>R. J.</given-names></name> <name><surname>Hoegh-Guldberg</surname> <given-names>O.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W. D.</given-names></name> <name><surname>Schreiber</surname> <given-names>U.</given-names></name></person-group> (<year>1998</year>). <article-title>Temperature-induced bleaching of corals begins with impairment of the CO<sub>2</sub> fixation mechanism in zooxanthellae</article-title>. <source>Plant Cell Environ.</source> <volume>21</volume>, <fpage>1219</fpage>&#x02013;<lpage>1230</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-3040.1998.00345.x</pub-id></citation></ref>
<ref id="B28">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jones</surname> <given-names>R. J.</given-names></name> <name><surname>Muller</surname> <given-names>J.</given-names></name> <name><surname>Haynes</surname> <given-names>D.</given-names></name> <name><surname>Schreiber</surname> <given-names>U.</given-names></name></person-group> (<year>2003</year>). <article-title>Effects of herbicides diuron and atrazine on corals of the Great Barrier Reef, Australia</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>251</volume>, <fpage>153</fpage>&#x02013;<lpage>167</lpage>. <pub-id pub-id-type="doi">10.3354/meps251153</pub-id></citation></ref>
<ref id="B29">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kalaji</surname> <given-names>H. M.</given-names></name> <name><surname>Schansker</surname> <given-names>G.</given-names></name> <name><surname>Brestic</surname> <given-names>M.</given-names></name> <name><surname>Bussotti</surname> <given-names>F.</given-names></name> <name><surname>Calatayud</surname> <given-names>A.</given-names></name> <name><surname>Ferroni</surname> <given-names>L.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Frequently asked questions about chlorophyll fluorescence, the sequel</article-title>. <source>Photosyn. Res.</source> <volume>132</volume>, <fpage>13</fpage>&#x02013;<lpage>66</lpage>. <pub-id pub-id-type="doi">10.1007/s11120-016-0318-y</pub-id><pub-id pub-id-type="pmid">27815801</pub-id></citation></ref>
<ref id="B30">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Klughammer</surname> <given-names>C.</given-names></name> <name><surname>Schreiber</surname> <given-names>U.</given-names></name></person-group> (<year>1994</year>). <article-title>An improved method, using saturating light-pulses, for the determination of photosystem-I quantum yield via P700<sup>&#x0002B;</sup>-absorbance changes at 830 nm</article-title>. <source>Planta</source> <volume>192</volume>, <fpage>261</fpage>&#x02013;<lpage>268</lpage>. <pub-id pub-id-type="doi">10.1007/BF01089043</pub-id></citation></ref>
<ref id="B31">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kolber</surname> <given-names>Z. S.</given-names></name> <name><surname>Prasil</surname> <given-names>O.</given-names></name> <name><surname>Falkowski</surname> <given-names>P. G.</given-names></name></person-group> (<year>1998</year>). <article-title>Measurements of variable chlorophyll fluorescence using fast repetition rate techniques: defining methodology and experimental protocols</article-title>. <source>Biochim. Biophys. Acta Bioenerg.</source> <volume>1367</volume>, <fpage>88</fpage>&#x02013;<lpage>106</lpage>. <pub-id pub-id-type="doi">10.1016/S0005-2728(98)00135-2</pub-id><pub-id pub-id-type="pmid">9784616</pub-id></citation></ref>
<ref id="B32">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kou</surname> <given-names>J.</given-names></name> <name><surname>Oguchi</surname> <given-names>R.</given-names></name> <name><surname>Fan</surname> <given-names>D.-Y.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name></person-group> (<year>2012</year>). <article-title>The time course of photoinactivation of photosystem II in leaves revisited</article-title>. <source>Photosyn. Res.</source> <volume>113</volume>, <fpage>157</fpage>&#x02013;<lpage>164</lpage>. <pub-id pub-id-type="doi">10.1007/s11120-012-9743-8</pub-id><pub-id pub-id-type="pmid">22644475</pub-id></citation></ref>
<ref id="B33">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kou</surname> <given-names>J.</given-names></name> <name><surname>Takahashi</surname> <given-names>S.</given-names></name> <name><surname>Oguchi</surname> <given-names>R.</given-names></name> <name><surname>Fan</surname> <given-names>D.-Y.</given-names></name> <name><surname>Badger</surname> <given-names>M. R.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name></person-group> (<year>2013</year>). <article-title>Estimation of the steady-state cyclic electron flux around PSI in spinach leaf discs in white light, CO2-enriched air and other varied conditions</article-title>. <source>Funct. Plant Biol.</source> <volume>40</volume>, <fpage>1018</fpage>&#x02013;<lpage>1028</lpage>. <pub-id pub-id-type="doi">10.1071/FP13010</pub-id></citation></ref>
<ref id="B34">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kramer</surname> <given-names>D. M.</given-names></name> <name><surname>Evans</surname> <given-names>J. R.</given-names></name></person-group> (<year>2011</year>). <article-title>The Importance of energy balance in improving photosynthetic productivity</article-title>. <source>Plant Physiol.</source> <volume>155</volume>, <fpage>70</fpage>&#x02013;<lpage>78</lpage>. <pub-id pub-id-type="doi">10.1104/pp.110.166652</pub-id><pub-id pub-id-type="pmid">21078862</pub-id></citation></ref>
<ref id="B35">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kr&#x000E4;mer</surname> <given-names>W. E.</given-names></name> <name><surname>Schrameyer</surname> <given-names>V.</given-names></name> <name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>Bischof</surname> <given-names>K.</given-names></name></person-group> (<year>2013</year>). <article-title>PSII activity and pigment dynamics of Symbiodinium in two Indo-Pacific corals exposed to short-term high-light stress</article-title>. <source>Mar. Biol.</source> <volume>160</volume>, <fpage>563</fpage>&#x02013;<lpage>577</lpage>. <pub-id pub-id-type="doi">10.1007/s00227-012-2113-4</pub-id></citation></ref>
<ref id="B36">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Leggat</surname> <given-names>W.</given-names></name> <name><surname>Whitney</surname> <given-names>S.</given-names></name> <name><surname>Yellowlees</surname> <given-names>D.</given-names></name></person-group> (<year>2004</year>). <article-title>Is coral bleaching due to the instability of the zooxanthellae dark reactions?</article-title> <source>Symbiosis</source> <volume>37</volume>, <fpage>137</fpage>&#x02013;<lpage>153</lpage>.</citation></ref>
<ref id="B37">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lichtenberg</surname> <given-names>M.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name></person-group> (<year>2016</year>). <article-title>Photosynthetic acclimation of Symbiodinium in hospite depends on vertical position in the tissue of the scleractinian coral Montastrea curta</article-title>. <source>Front. Microbiol.</source> <volume>7</volume>:<fpage>230</fpage>. <pub-id pub-id-type="doi">10.3389/fmicb.2016.00230</pub-id><pub-id pub-id-type="pmid">26955372</pub-id></citation></ref>
<ref id="B38">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lilley</surname> <given-names>R. M.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name></person-group> (<year>2010</year>). <article-title>The determination of activity of the enzyme Rubisco in cell extracts of the dinoflagellate alga <italic>Symbiodinium</italic> sp. by manganese chemiluminescence and its response to short-term thermal stress of the alga</article-title>. <source>Plant Cell Environ.</source> <volume>33</volume>, <fpage>995</fpage>&#x02013;<lpage>1004</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-3040.2010.02121.x</pub-id><pub-id pub-id-type="pmid">20102538</pub-id></citation></ref>
<ref id="B39">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>McClanahan</surname> <given-names>T.</given-names></name></person-group> (<year>2004</year>). <article-title>The relationship between bleaching and mortality of common corals</article-title>. <source>Mar. Biol.</source> <volume>144</volume>, <fpage>1239</fpage>&#x02013;<lpage>1245</lpage>. <pub-id pub-id-type="doi">10.1007/s00227-003-1271-9</pub-id></citation></ref>
<ref id="B40">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Muir</surname> <given-names>P. R.</given-names></name> <name><surname>Wallace</surname> <given-names>C. C.</given-names></name> <name><surname>Done</surname> <given-names>T.</given-names></name> <name><surname>Aguirre</surname> <given-names>J. D.</given-names></name></person-group> (<year>2015</year>). <article-title>Limited scope for latitudinal extension of reef corals</article-title>. <source>Science</source> <volume>348</volume>, <fpage>1135</fpage>&#x02013;<lpage>1138</lpage>. <pub-id pub-id-type="doi">10.1126/science.1259911</pub-id><pub-id pub-id-type="pmid">26045436</pub-id></citation></ref>
<ref id="B41">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Oakley</surname> <given-names>C. A.</given-names></name> <name><surname>Schmidt</surname> <given-names>G. W.</given-names></name> <name><surname>Hopkinson</surname> <given-names>B. M.</given-names></name></person-group> (<year>2014</year>). <article-title>Thermal responses of Symbiodinium photosynthetic carbon assimilation</article-title>. <source>Coral Reefs</source> <volume>33</volume>, <fpage>501</fpage>&#x02013;<lpage>512</lpage>. <pub-id pub-id-type="doi">10.1007/s00338-014-1130-9</pub-id></citation></ref>
<ref id="B42">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Oguchi</surname> <given-names>R.</given-names></name> <name><surname>Douwstra</surname> <given-names>P.</given-names></name> <name><surname>Fujita</surname> <given-names>T.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name> <name><surname>Terashima</surname> <given-names>I.</given-names></name></person-group> (<year>2011</year>). <article-title>Intra-leaf gradients of photoinhibition induced by different color lights: implications for the dual mechanisms of photoinhibition and for the application of conventional chlorophyll fluorometers</article-title>. <source>New Phytol.</source> <volume>191</volume>, <fpage>146</fpage>&#x02013;<lpage>159</lpage>. <pub-id pub-id-type="doi">10.1111/j.1469-8137.2011.03669.x</pub-id><pub-id pub-id-type="pmid">21418065</pub-id></citation></ref>
<ref id="B43">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Osmond</surname> <given-names>C. B.</given-names></name> <name><surname>Chow</surname> <given-names>W. S.</given-names></name> <name><surname>Wyber</surname> <given-names>R.</given-names></name> <name><surname>Zavafer</surname> <given-names>A.</given-names></name> <name><surname>Keller</surname> <given-names>B.</given-names></name> <name><surname>Muller</surname> <given-names>O.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Relative functional and optical absorption cross sections of PSII and other photosynthetic parameters monitored <italic>in situ</italic>, at a distance with a time resolution of a few seconds, using a prototype Light Induced Fluorescence Transient (LIFT) device</article-title>. <source>Funct. Plant Biol.</source> <pub-id pub-id-type="doi">10.1071/FP17024</pub-id>. [Epub ahead of print].</citation></ref>
<ref id="B44">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pernice</surname> <given-names>M.</given-names></name> <name><surname>Levy</surname> <given-names>O.</given-names></name></person-group> (<year>2014</year>). <article-title>Novel tools integrating metabolic and gene function to study the impact of the environment on coral symbiosis</article-title>. <source>Front. Microbiol.</source> <volume>5</volume>:<fpage>448</fpage>. <pub-id pub-id-type="doi">10.3389/fmicb.2014.00448</pub-id><pub-id pub-id-type="pmid">25191321</pub-id></citation></ref>
<ref id="B45">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ragni</surname> <given-names>M.</given-names></name> <name><surname>Airs</surname> <given-names>R. L.</given-names></name> <name><surname>Hennige</surname> <given-names>S. J.</given-names></name> <name><surname>Suggett</surname> <given-names>D. J.</given-names></name> <name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Geider</surname> <given-names>R. J.</given-names></name></person-group> (<year>2010</year>). <article-title>PSII photoinhibition and photorepair in Symbiodinium (Pyrrhophyta) differs between thermally tolerant and sensitive phylotypes</article-title>. <source>Mar. Ecol. Prog. Ser.</source> <volume>406</volume>, <fpage>57</fpage>&#x02013;<lpage>70</lpage>. <pub-id pub-id-type="doi">10.3354/meps08571</pub-id></citation></ref>
<ref id="B46">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>Schreiber</surname> <given-names>U.</given-names></name> <name><surname>Gademann</surname> <given-names>R.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W. D.</given-names></name></person-group> (<year>2005</year>). <article-title>Coral photobiology studied with a new imaging pulse amplitude modulated fluorometer</article-title>. <source>J. Phycol.</source> <volume>41</volume>, <fpage>335</fpage>&#x02013;<lpage>342</lpage>. <pub-id pub-id-type="doi">10.1111/j.1529-8817.2005.04034.x</pub-id></citation></ref>
<ref id="B47">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rehman</surname> <given-names>A. U.</given-names></name> <name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>De&#x000E1;k</surname> <given-names>Z.</given-names></name> <name><surname>Sass</surname> <given-names>L.</given-names></name> <name><surname>Larkum</surname> <given-names>A.</given-names></name> <name><surname>Ralph</surname> <given-names>P.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title><italic>Symbiodinium</italic> sp. cells produce light-induced intra-and extracellular singlet oxygen, which mediates photodamage of the photosynthetic apparatus and has the potential to interact with the animal host in coral symbiosis</article-title>. <source>New Phytol.</source> <volume>212</volume>, <fpage>472</fpage>&#x02013;<lpage>484</lpage>. <pub-id pub-id-type="doi">10.1111/nph.14056</pub-id><pub-id pub-id-type="pmid">27321415</pub-id></citation></ref>
<ref id="B48">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Reynolds</surname> <given-names>J. M.</given-names></name> <name><surname>Bruns</surname> <given-names>B. U.</given-names></name> <name><surname>Fitt</surname> <given-names>W. K.</given-names></name> <name><surname>Schmidt</surname> <given-names>G. W.</given-names></name></person-group> (<year>2008</year>). <article-title>Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians</article-title>. <source>Proc. Natl. Acad. Sci. U.S.A.</source> <volume>105</volume>, <fpage>13674</fpage>&#x02013;<lpage>13678</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.0805187105</pub-id><pub-id pub-id-type="pmid">18757737</pub-id></citation></ref>
<ref id="B49">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Roberty</surname> <given-names>S.</given-names></name> <name><surname>Bailleul</surname> <given-names>B.</given-names></name> <name><surname>Berne</surname> <given-names>N.</given-names></name> <name><surname>Franck</surname> <given-names>F.</given-names></name> <name><surname>Cardol</surname> <given-names>P.</given-names></name></person-group> (<year>2014</year>). <article-title>PSI Mehler reaction is the main alternative photosynthetic electron pathway in <italic>Symbiodinium</italic> sp., symbiotic dinoflagellates of cnidarians</article-title>. <source>New Phytol.</source> <volume>204</volume>, <fpage>81</fpage>&#x02013;<lpage>91</lpage>. <pub-id pub-id-type="doi">10.1111/nph.12903</pub-id><pub-id pub-id-type="pmid">24975027</pub-id></citation></ref>
<ref id="B50">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Roth</surname> <given-names>M. S.</given-names></name></person-group> (<year>2014</year>). <article-title>The engine of the reef: photobiology of the coral&#x02013;algal symbiosis</article-title>. <source>Front. Microbiol.</source> <volume>5</volume>:<fpage>422</fpage>. <pub-id pub-id-type="doi">10.3389/fmicb.2014.00422</pub-id><pub-id pub-id-type="pmid">25202301</pub-id></citation></ref>
<ref id="B51">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schansker</surname> <given-names>G.</given-names></name> <name><surname>Toth</surname> <given-names>S. Z.</given-names></name> <name><surname>Strasser</surname> <given-names>R. J.</given-names></name></person-group> (<year>2005</year>). <article-title>Methylviologen and dibromothymoquinone treatments of pea leaves reveal the role of photosystem I in the Chl a fluorescence rise OJIP</article-title>. <source>Biochim. Biophys. Acta Bioenerg.</source> <volume>1706</volume>, <fpage>250</fpage>&#x02013;<lpage>261</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbabio.2004.11.006</pub-id><pub-id pub-id-type="pmid">15694353</pub-id></citation></ref>
<ref id="B52">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schrameyer</surname> <given-names>V.</given-names></name> <name><surname>Kr&#x000E4;mer</surname> <given-names>W.</given-names></name> <name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>Jeans</surname> <given-names>J.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>Bischof</surname> <given-names>K.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Under high light stress two Indo-Pacific coral species display differential photodamage and photorepair dynamics</article-title>. <source>Mar. Biol.</source> <volume>163</volume>, <fpage>1</fpage>&#x02013;<lpage>13</lpage>. <pub-id pub-id-type="doi">10.1007/s00227-016-2940-9</pub-id></citation></ref>
<ref id="B53">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schrameyer</surname> <given-names>V.</given-names></name> <name><surname>Wangpraseurt</surname> <given-names>D.</given-names></name> <name><surname>Hill</surname> <given-names>R.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2014</year>). <article-title>Light respiratory processes and gross photosynthesis in two scleractinian corals</article-title>. <source>PLoS ONE</source> <volume>9</volume>:<fpage>e110814</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0110814</pub-id><pub-id pub-id-type="pmid">25360746</pub-id></citation></ref>
<ref id="B54">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Strasser</surname> <given-names>R. J.</given-names></name></person-group> (<year>1992</year>). <article-title>The Fo and the OJIP fluorescence rise in higher plants and algae</article-title>. <source>Regul. Chloroplast Biogenesis</source>. <volume>226</volume>, <fpage>423</fpage>&#x02013;<lpage>426</lpage>.</citation></ref>
<ref id="B55">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Strasser</surname> <given-names>R. J.</given-names></name> <name><surname>Tsimilli-Michael</surname> <given-names>M.</given-names></name> <name><surname>Qiang</surname> <given-names>S.</given-names></name> <name><surname>Goltsev</surname> <given-names>V.</given-names></name></person-group> (<year>2010</year>). <article-title>Simultaneous <italic>in vivo</italic> recording of prompt and delayed fluorescence and 820 nm reflection changes during drying and after rehydration of the resurrection plant <italic>Haberlea rhodopensis</italic></article-title>. <source>Biochim. Biophys. Acta Bioenerg.</source> <volume>1797</volume>, <fpage>122</fpage>&#x02013;<lpage>122</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbabio.2010.04.365</pub-id><pub-id pub-id-type="pmid">20226756</pub-id></citation></ref>
<ref id="B56">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Suggett</surname> <given-names>D. J.</given-names></name> <name><surname>Goyen</surname> <given-names>S.</given-names></name> <name><surname>Evenhuis</surname> <given-names>C.</given-names></name> <name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>Pettay</surname> <given-names>D. T.</given-names></name> <name><surname>Warner</surname> <given-names>M. E.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Functional diversity of photobiological traits within the genus Symbiodinium appears to be governed by the interaction of cell size with cladal designation</article-title>. <source>New Phytol.</source> <volume>208</volume>, <fpage>370</fpage>&#x02013;<lpage>381</lpage>. <pub-id pub-id-type="doi">10.1111/nph.13483</pub-id><pub-id pub-id-type="pmid">26017701</pub-id></citation></ref>
<ref id="B57">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Suggett</surname> <given-names>D. J.</given-names></name> <name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Smith</surname> <given-names>D. J.</given-names></name> <name><surname>Davey</surname> <given-names>P.</given-names></name> <name><surname>Hennige</surname> <given-names>S.</given-names></name> <name><surname>Baker</surname> <given-names>N. R.</given-names></name></person-group> (<year>2008</year>). <article-title>Photosynthesis and production of hydrogen peroxide by Symbiodinium (Pyrrhophyta) phylotypes with different thermal tolerances</article-title>. <source>J. Phycol.</source> <volume>44</volume>, <fpage>948</fpage>&#x02013;<lpage>956</lpage>. <pub-id pub-id-type="doi">10.1111/j.1529-8817.2008.00537.x</pub-id><pub-id pub-id-type="pmid">27041613</pub-id></citation></ref>
<ref id="B58">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>Wangpraseurt</surname> <given-names>D.</given-names></name> <name><surname>Tamburic</surname> <given-names>B.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>Schreiber</surname> <given-names>U.</given-names></name> <name><surname>Suggett</surname> <given-names>D. J.</given-names></name> <etal/></person-group>. (<year>2014</year>). <article-title>Effective light absorption and absolute electron transport rates in the coral <italic>Pocillopora damicornis</italic></article-title>. <source>Plant Physiol. Biochem.</source> <volume>83</volume>, <fpage>159</fpage>&#x02013;<lpage>67</lpage>. <pub-id pub-id-type="doi">10.1016/j.plaphy.2014.07.015</pub-id><pub-id pub-id-type="pmid">25146689</pub-id></citation></ref>
<ref id="B59">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>T&#x000F3;th</surname> <given-names>S. Z.</given-names></name> <name><surname>Schansker</surname> <given-names>G.</given-names></name> <name><surname>Strasser</surname> <given-names>R. J.</given-names></name></person-group> (<year>2007</year>). <article-title>A non-invasive assay of the plastoquinone pool redox state based on the OJIP-transient</article-title>. <source>Photosyn. Res.</source> <volume>93</volume>, <fpage>193</fpage>&#x02013;<lpage>203</lpage>. <pub-id pub-id-type="doi">10.1007/s11120-007-9179-8</pub-id><pub-id pub-id-type="pmid">17487568</pub-id></citation></ref>
<ref id="B60">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Vass</surname> <given-names>I.</given-names></name></person-group> (<year>2012</year>). <article-title>Molecular mechanisms of photodamage in the Photosystem II complex</article-title>. <source>Biochim. Biophys. Acta Bioenerg.</source> <volume>1817</volume>, <fpage>209</fpage>&#x02013;<lpage>217</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbabio.2011.04.014</pub-id><pub-id pub-id-type="pmid">21565163</pub-id></citation></ref>
<ref id="B61">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wangpraseurt</surname> <given-names>D.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>Franklin</surname> <given-names>J.</given-names></name> <name><surname>Szab&#x000F3;</surname> <given-names>M.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name></person-group> (<year>2014</year>). <article-title>Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals</article-title>. <source>J. Exp. Biol.</source> <volume>217</volume>, <fpage>489</fpage>&#x02013;<lpage>498</lpage>. <pub-id pub-id-type="doi">10.1242/jeb.091116</pub-id><pub-id pub-id-type="pmid">24523498</pub-id></citation></ref>
<ref id="B62">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wangpraseurt</surname> <given-names>D.</given-names></name> <name><surname>Larkum</surname> <given-names>A. W.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name> <name><surname>K&#x000FC;hl</surname> <given-names>M.</given-names></name></person-group> (<year>2012</year>). <article-title>Light gradients and optical microniches in coral tissues</article-title>. <source>Front. Microbiol.</source> <volume>3</volume>:<fpage>316</fpage>. <pub-id pub-id-type="doi">10.3389/fmicb.2012.00316</pub-id><pub-id pub-id-type="pmid">22969755</pub-id></citation></ref>
<ref id="B63">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Warner</surname> <given-names>M.</given-names></name> <name><surname>Chilcoat</surname> <given-names>G.</given-names></name> <name><surname>McFarland</surname> <given-names>F.</given-names></name> <name><surname>Fitt</surname> <given-names>W.</given-names></name></person-group> (<year>2002</year>). <article-title>Seasonal fluctuations in the photosynthetic capacity of photosystem II in symbiotic dinoflagellates in the Caribbean reef-building coral Montastraea</article-title>. <source>Mar. Biol.</source> <volume>141</volume>, <fpage>31</fpage>&#x02013;<lpage>38</lpage>. <pub-id pub-id-type="doi">10.1007/s00227-002-0807-8</pub-id></citation></ref>
<ref id="B64">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Fitt</surname> <given-names>W. K.</given-names></name> <name><surname>Schmidt</surname> <given-names>G. W.</given-names></name></person-group> (<year>1999</year>). <article-title>Damage to photosystem II in symbiotic dinoflagellates: a determinant of coral bleaching</article-title>. <source>Proc. Natl. Acad. Sci. U.S.A.</source> <volume>96</volume>, <fpage>8007</fpage>&#x02013;<lpage>8012</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.96.14.8007</pub-id><pub-id pub-id-type="pmid">10393938</pub-id></citation></ref>
<ref id="B65">
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Lesser</surname> <given-names>M. P.</given-names></name> <name><surname>Ralph</surname> <given-names>P. J.</given-names></name></person-group> (<year>2010</year>). <article-title>Chlorophyll fluorescence in reef building corals</article-title>, in <source>Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications Developments in Applied Phycology</source>, <volume>Vol. 4</volume>, eds <person-group person-group-type="editor"><name><surname>Suggett</surname> <given-names>D. J.</given-names></name> <name><surname>Pr&#x000E1;&#x00161;il</surname> <given-names>O.</given-names></name> <name><surname>Borowitzka</surname> <given-names>M. A.</given-names></name></person-group> (<publisher-loc>Dordrecht</publisher-loc>: <publisher-name>Springer</publisher-name>), <fpage>209</fpage>&#x02013;<lpage>222</lpage>.</citation></ref>
<ref id="B66">
<citation citation-type="book"><person-group person-group-type="author"><name><surname>Warner</surname> <given-names>M. E.</given-names></name> <name><surname>Suggett</surname> <given-names>D. J.</given-names></name></person-group> (<year>2016</year>). <article-title>The Photobiology of <italic>Symbiodinium</italic> spp.: linking physiological diversity to the implications of stress and resilience</article-title>, in <source>The Cnidaria, Past, Present and Future</source>, eds <person-group person-group-type="editor"><name><surname>Goffredo</surname> <given-names>S.</given-names></name> <name><surname>Dubinsky</surname> <given-names>Z.</given-names></name></person-group> (<publisher-loc>Cham</publisher-loc>: <publisher-name>Springer</publisher-name>), <fpage>489</fpage>&#x02013;<lpage>509</lpage>.</citation></ref>
<ref id="B67">
<citation citation-type="journal"><person-group person-group-type="author"><name><surname>Whitney</surname> <given-names>S. M.</given-names></name> <name><surname>Shaw</surname> <given-names>D. C.</given-names></name> <name><surname>Yellowlees</surname> <given-names>D.</given-names></name></person-group> (<year>1995</year>). <article-title>Evidence that some dinoflagellates contain a Ribulose-1, 5-bisphosphate carboxylase/oxygenase related to that of the $ alpha $-proteobacteria</article-title>. <source>Proc. Biol. Sci.</source> <volume>259</volume>, <fpage>271</fpage>&#x02013;<lpage>275</lpage>. <pub-id pub-id-type="doi">10.1098/rspb.1995.0040</pub-id><pub-id pub-id-type="pmid">7740046</pub-id></citation></ref>
</ref-list>
<glossary>
<def-list>
<title>Abbreviations</title>
<def-item><term>DCMU</term>
<def><p>3-(3,4-dichlorophenyl)-1,1-dimethyl-urea</p></def></def-item>
<def-item><term>FR</term>
<def><p>far red light</p></def></def-item>
<def-item><term><italic>F</italic><sub><italic>o</italic></sub></term>
<def><p>intrinsic fluorescence signal with fully oxidized Q<sub>A</sub> in the dark</p></def></def-item>
<def-item><term><italic>F</italic><sub><italic>m</italic></sub></term>
<def><p>maximal fluorescence signal with fully reduced Q<sub>A</sub></p></def></def-item>
<def-item><term><italic>F</italic><sub><italic>v</italic></sub></term>
<def><p>Variable fluorescence in the dark (proportional to reducible Q<sub>A</sub>)</p></def></def-item>
<def-item><term>GA</term>
<def><p>glycolaldehyde</p></def></def-item>
<def-item><term><italic>F</italic><sub><italic>v</italic></sub>/<italic>F</italic><sub><italic>m</italic></sub></term>
<def><p>Maximum quantum efficiency of open PSII centers in the dark based on full Q<sub>A</sub> reduction</p></def></def-item>
<def-item><term>MT</term>
<def><p>multiple turnover</p></def></def-item>
<def-item><term>LIFT-FRRF</term>
<def><p>laser-induced fluorescence transient fast repetition rate fluorometry</p></def></def-item>
<def-item><term>PAR</term>
<def><p>photosynthetically active radiation (400-700 nm)</p></def></def-item>
<def-item><term>PSII</term>
<def><p>photosystem II</p></def></def-item>
<def-item><term>PSI</term>
<def><p>photosystem I</p></def></def-item>
<def-item><term>P700</term>
<def><p>special chlorophyll dimer acting as the primary electron donor in PSI</p></def></def-item>
<def-item><term>P700<sup>&#x0002B;</sup></term>
<def><p>oxidized state of P700</p></def></def-item>
<def-item><term><italic>P</italic><sub><italic>m</italic></sub></term>
<def><p>maximum P700<sup>&#x0002B;</sup> signal in weak FR light</p></def></def-item>
<def-item><term>PQ</term>
<def><p>plastoquinone pool &#x003C3;<sub><italic>PSII</italic></sub>&#x02014;functional absorption cross section of PSII in the dark</p></def></def-item>
<def-item><term>Q<sub>A</sub></term>
<def><p>primary quinone electron acceptor in PSII</p></def></def-item>
<def-item><term>Q<sub>B</sub></term>
<def><p>secondary quinone electron acceptor in PS II</p></def></def-item>
<def-item><term>NIR</term>
<def><p>near infrared light</p></def></def-item>
<def-item><term>ST</term>
<def><p>single turnover.</p></def></def-item>
</def-list>
</glossary>
<fn-group>
<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> This work was supported by the award of Australian Research Council Discovery Project (ARC DP120101360) to WC and Future Fellowship (FT130100202) to DS. IV and LS were partly supported by a grant from the Hungarian National Research, Development and Innovation Office (NN110960). Construction of the prototype LIFT-FRRf instrument was supported by a development grant to BO from the University of Wollongong.</p>
</fn>
</fn-group>
</back>
</article>