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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2017.00233</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Estuarine Suspended Sediment Dynamics: Observations Derived from over a Decade of Satellite Data</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Reisinger</surname> <given-names>Anthony</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/334466/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Gibeaut</surname> <given-names>James C.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/387799/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Tissot</surname> <given-names>Phillippe E.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/387807/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Coastal and Marine Geospatial Laboratory, Harte Research Institute, Texas A&#x00026;M University&#x02014;Corpus Christi</institution>, <addr-line>Corpus Christi, TX</addr-line>, <country>United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>Conrad Blucher Institute, Texas A&#x00026;M University&#x02014;Corpus Christi</institution>, <addr-line>Corpus Christi, TX</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Steven G. Ackleson, United States Naval Research Laboratory, United States</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Matthew Lewis, Bangor University, United Kingdom; Sachidananda Mishtra, National Oceanic and Atmospheric Administration (NOAA), United States</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Anthony Reisinger <email>anthony.reisinger&#x00040;gmail.com</email></p></fn>
<fn fn-type="corresp" id="fn002"><p>James C. Gibeaut <email>james.gibeaut&#x00040;tamucc.edu</email></p></fn>
<fn fn-type="other" id="fn003"><p>This article was submitted to Coastal Ocean Processes, a section of the journal Frontiers in Marine Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>20</day>
<month>12</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>233</elocation-id>
<history>
<date date-type="received">
<day>22</day>
<month>02</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>10</day>
<month>07</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Reisinger, Gibeaut and Tissot.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Reisinger, Gibeaut and Tissot</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>Suspended sediment dynamics of Corpus Christi Bay, Texas, USA, a shallow-water wind-driven estuary, were investigated by combining field and satellite measurements of total suspended solids (TSS). An algorithm was developed to transform 500-m Moderate Resolution Imaging Spectroradiometer (MODIS) Aqua satellite reflectance data into estimated TSS values. The algorithm was developed using a reflectance ratio regression of MODIS Band 1 (red) and Band 3 (green) with TSS measurements (<italic>n</italic> &#x0003D; 54) collected by the Texas Commission on Environmental Quality for Corpus Christi Bay and other Texas estuaries. The algorithm was validated by independently collected TSS measurements during the period of 2011&#x02013;2014 with an uncertainty estimate of 13%. The algorithm was applied to the period of 2002&#x02013;2014 to create a synoptic time series of TSS for Corpus Christi Bay. Potential drivers of long-term variability in suspended sediment were investigated. Median and IQR composites of suspended sediments were generated for seasonal wind regimes. From this analysis it was determined that long-term, spatial patterns of suspended sediment in the estuary are related to wind-wave resuspension during the predominant northerly and prevalent southeasterly seasonal wind regimes. The impact of dredging is also apparent in long-term patterns of Corpus Christi Bay as concentrations of suspended sediments over dredge spoil disposal sites are higher and more variable than surrounding areas, which is most likely due to their less consolidated sediments and shallower depths requiring less wave energy for sediment resuspension. This study highlights the advantage of how long-synoptic time series of TSS can be used to elucidate the major drivers of suspended sediments in estuaries.</p></abstract>
<kwd-group>
<kwd>suspended sediments</kwd>
<kwd>MODIS</kwd>
<kwd>wind-driven estuary</kwd>
<kwd>wind-wave resuspension</kwd>
<kwd>Corpus Christi Bay</kwd>
<kwd>dredging influence</kwd>
</kwd-group>
<contract-num rid="cn001">NNX12AO09H</contract-num>
<contract-num rid="cn002">NA09NMF4720179</contract-num>
<contract-sponsor id="cn001">National Aeronautics and Space Administration<named-content content-type="fundref-id">10.13039/100000104</named-content></contract-sponsor>
<contract-sponsor id="cn002">National Oceanic and Atmospheric Administration<named-content content-type="fundref-id">10.13039/100000192</named-content></contract-sponsor>
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<fig-count count="6"/>
<table-count count="1"/>
<equation-count count="1"/>
<ref-count count="33"/>
<page-count count="10"/>
<word-count count="7261"/>
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</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Estuaries are highly dynamic environments. They exist in transitional zones where riverine systems combine with oceanic systems and exhibit characteristics of both, such as floods and droughts as well as tides and waves. Suspended sediments are an integral part of estuarine systems; their flux within estuaries is a result of interplay between freshwater inflow, tidal currents, wind-wave resuspension, commercial fishing, and dredging operations (Ward and Montague, <xref ref-type="bibr" rid="B29">1996</xref>). The relative importance of physical processes influencing the spatial distributions of suspended sediments varies as a function of time and space, morphology, bathymetry, and regional climate, however, the influence of anthropogenic activities is largely unknown (Ward and Montague, <xref ref-type="bibr" rid="B29">1996</xref>; Green and Coco, <xref ref-type="bibr" rid="B11">2014</xref>).</p>
<p>Most US state and federal agencies use a few point measurements within estuarine systems to characterize overall conditions. Typically, suspended sediment concentrations have been quantified by collecting water samples from discrete locations within an estuary and measuring their total suspended solids (TSS) concentrations (Ward and Montague, <xref ref-type="bibr" rid="B29">1996</xref>). For temporal studies, the sampling is repeated at the same station over time, thus providing insight into the processes ongoing in the area (Shideler, <xref ref-type="bibr" rid="B23">1984</xref>). The spatial resolution of this approach, however, is limited by time and expense thus restricting the number of regularly sampled locations. Conditions observed at a single point, however, can be the result of many complex and interrelated processes. Early attempts to bridge this spatial gap in Texas included eight repeated sample collections at 14 locations within 5 h, in Corpus Christi Bay using a helicopter (Shideler, <xref ref-type="bibr" rid="B23">1984</xref>). Shideler&#x00027;s study produced some of the first quasi-synoptic measurements of suspended sediments in this region and documented the dominant spatial patterns of suspended sediment distributions including the bay&#x00027;s response to wind-wave resuspension from prevalent northerlies associated with frontal passage and predominant southeasterlies. While these measurements provided much-improved coverage, their relatively limited spatial and temporal resolutions and their fair-weather bias created impediments when trying to characterize the complexity and heterogeneity of the Corpus Christi Bay estuarine system.</p>
<p>A major advance in the monitoring of suspended sediments came when Stumpf and Pennock (<xref ref-type="bibr" rid="B24">1989</xref>) discovered that weather satellites were able to quantify suspended sediments in the Chesapeake and Delaware Bays. Satellite remote sensing has increasingly provided synoptic views of suspended sediment dynamics leading to some of the first Environmental Data Records (EDR) of suspended sediments acquired daily and spanning decades (Stumpf and Pennock, <xref ref-type="bibr" rid="B24">1989</xref>; Ruhl et al., <xref ref-type="bibr" rid="B22">2001</xref>). More recently, satellites have been used to monitor suspended sediment and other water quality parameters such as chlorophyll-a (CHL-&#x003B1;) and colored dissolved organic matter (CDOM) (Matthews, <xref ref-type="bibr" rid="B13">2011</xref>). While most of this research based on satellite imagery has focused on oceanic areas (McClain, <xref ref-type="bibr" rid="B14">2009</xref>), there is now much interest in studying suspended sediments in estuaries and coastal areas (Miller and McKee, <xref ref-type="bibr" rid="B17">2004</xref>; D&#x00027;sa and Miller, <xref ref-type="bibr" rid="B3">2005</xref>; Zawada et al., <xref ref-type="bibr" rid="B32">2007</xref>; Doxaran et al., <xref ref-type="bibr" rid="B6">2009</xref>; Chen et al., <xref ref-type="bibr" rid="B2">2010</xref>; Petus et al., <xref ref-type="bibr" rid="B21">2010</xref>; Feng et al., <xref ref-type="bibr" rid="B8">2014</xref>).</p>
<p>This study was conducted to gain a better understanding of estuarine sedimentary processes in Texas estuaries using satellite-derived TSS data by taking advantage of the spatial and temporal resolution data provided by the MODIS-Aqua almost-daily 500-m data. These measurements allow for the identification of prevalent and predominant controls that force the distribution of estuarine suspended sediments in shallow-water estuaries. The study starts with the development and assessment of an inversion algorithm to create an EDR of suspended sediment. The algorithm is calibrated by comparing MODIS-Aqua satellite reflectance data with a long term data set of TSS collected by the Texas Commission on Environmental Quality (TCEQ) in Texas estuaries. The algorithm is then validated using independent <italic>in situ</italic> measurements collected by Paudel and Montagna (<xref ref-type="bibr" rid="B20">2014</xref>). The study area and <italic>in situ</italic> measurement locations are illustrated in Figure <xref ref-type="fig" rid="F1">1</xref>. The 12-year EDR is analyzed for a case study in Corpus Christi Bay. For this analysis, seasonal patterns of suspended sediment are identified as well as their main forcings. The influence of dredging is also considered.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Texas estuaries and <italic>in situ</italic> data collection sites of the TCEQ and Paudel and Montagna (<xref ref-type="bibr" rid="B20">2014</xref>).</p></caption>
<graphic xlink:href="fmars-04-00233-g0001.tif"/>
</fig>
</sec>
<sec id="s2">
<title>Study area</title>
<sec>
<title>Climate and sedimentary processes</title>
<p>Numerous shallow-water estuaries are found along the Texas coast (see Figure <xref ref-type="fig" rid="F1">1</xref>). These estuaries are drowned river valleys that formed during the Holocene after the last sea-level low stand. They are separated from the Gulf of Mexico by a thin chain of barrier islands and spits that span the length of the Texas Coast (Davis and FitzGerald, <xref ref-type="bibr" rid="B5">2004</xref>; Davis, <xref ref-type="bibr" rid="B4">2011</xref>). Small tidal inlets, the majority of which are jettied and dredged, connect the estuaries to the Gulf. These estuaries are in a microtidal (0.6 m Gulf and less than 0.3 m estuary tidal range), wave-dominated mixed energy coastal setting, and are affected by a climatic gradient with wetter conditions to the north and drier to the south (McKee and Baskaran, <xref ref-type="bibr" rid="B15">1999</xref>; Davis, <xref ref-type="bibr" rid="B4">2011</xref>; Montagna et al., <xref ref-type="bibr" rid="B18">2011</xref>). For all bays, marine sediment input is thought to be relatively small due to the microtidal setting (Yeager et al., <xref ref-type="bibr" rid="B31">2006</xref>). The bottom sediments and those in suspension mostly consist of fine-grained silt and clay (McKee and Baskaran, <xref ref-type="bibr" rid="B15">1999</xref>). Average grain size for Texas bays range from 2.3 to 8 phi (Folger, <xref ref-type="bibr" rid="B9">1972</xref>). For Corpus Christi Bay, the predominant bay bottom sediments range in grain size from 4.0 to 8.0 phi (Shideler, <xref ref-type="bibr" rid="B23">1984</xref>). Average depths in Texas estuaries range from 2 to 4 m.</p>
<p>This case study focuses on the suspended sediment dynamics of Corpus Christi Bay (Figure <xref ref-type="fig" rid="F2">2</xref>). Corpus Christi Bay is about 284 km<sup>2</sup> and the deepest of the Texas bays with an average depth of 4 m (McKee and Baskaran, <xref ref-type="bibr" rid="B15">1999</xref>). This estuary was chosen for comparison with a previous study by Shideler (<xref ref-type="bibr" rid="B23">1984</xref>). Relatively little freshwater enters this estuary from the Nueces River and Oso Creek. Low amounts of freshwater inflows coupled with high rates of evaporation cause the estuary to become hyper-saline for much of the year (Montagna et al., <xref ref-type="bibr" rid="B19">2012</xref>).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Detailed map of Corpus Christi Bay.</p></caption>
<graphic xlink:href="fmars-04-00233-g0002.tif"/>
</fig>
<p>Wind along the Texas coast is prevalently from the southeast for the majority of the year (spring-summer) complemented by predominant northerlies (fall-winter). The prevalent southeasterlies are stronger in the south and decrease in speed moving northeastward along the coast. The wind is strongest during spring and progressively decreases in speed during the summer. In contrast, frontal passages, &#x0201C;northers&#x0201D; or winter storms, bring the dominant wind from the north with wind speed often greater than 15 m/s. During these frontal passages, northerly wind gusts are generally preceded by high southerly wind speeds (Ward, <xref ref-type="bibr" rid="B28">1997</xref>). Shideler (<xref ref-type="bibr" rid="B23">1984</xref>) showed that wind-waves is the most important forcing of suspended sediments in Corpus Christi Bay.</p>
</sec>
<sec>
<title>Dredging and related impacts</title>
<p>Substantial modifications have occurred within Texas estuaries through the dredging of deep ship channels. In Corpus Christi Bay, the main channel is 14 m deep, spans the length of the estuary in an east-west direction and is maintained for navigation (Kraus, <xref ref-type="bibr" rid="B12">2007</xref>). Other shallower dredged channels are scattered throughout these estuarine systems (Figure <xref ref-type="fig" rid="F2">2</xref>). In Corpus Christi Bay, the Intracoastal Waterway (ICW) bisects the eastern portion of the bay. Sediment from routine dredging for channel maintenance are placed in subaqueous disposal areas next to navigation channels. While active dredging operations suspend large amounts of sediment, the materials are typically contained in boomed-off areas resulting in small impacted areas relative to the size of the estuary. Dredging operations are conducted over short periods of time for up to a few months. A lasting effect of dredging, however, is the alteration of the Bay bathymetry through the creation of subaqueous disposal areas. Sediments of placement areas may have a higher propensity to be suspended by wind-wave action as less wave energy is needed to suspend these materials due to their shallower depth relative to the rest of the bay.</p>
</sec>
</sec>
<sec id="s3">
<title>Datasets</title>
<p>The main data sets for this study consisted of two <italic>in situ</italic> data sets for the calibration and independent validation of the algorithm and MODIS satellite imagery processed to remove sun glint. The <italic>in situ</italic> suspended sediment data used to calibrate the study&#x00027;s model for transforming MODIS imagery to TSS was collected by the TCEQ. The TCEQ catalogs its surface water samples in the Surface Water Quality Monitoring Information System (SWQMIS) (Texas Commission on Environmental Quality, <xref ref-type="bibr" rid="B25">2008</xref>). TCEQ <italic>in situ</italic> measurements are collected following the Total Suspended Solid (TSS) EPA STORET Standard Method 2450b. This measurement involves taking a volume of water from a point within an estuary and passing it through a pre-weighed glass fiber filter. The filter is then dried and weighed with the mass of the sample divided by the volume of water filtered, normally denoted in mg/l. These measurements are typically made quarterly, however, some sites in the dataset are sampled sporadically for special projects. Data were extracted from the SWQMIS (Texas Commission on Environmental Quality, <xref ref-type="bibr" rid="B25">2008</xref>) for the period spanning 2002&#x02013;2010. For this analysis, only TSS data collected from the primary and secondary bays (Figure <xref ref-type="fig" rid="F1">1</xref>) were used. If coincident sampling of CHL-&#x003B1; was present, this too was extracted. To avoid mixed land-water pixels in the MODIS data, TCEQ data were omitted if stations were within a kilometer of the shoreline. Measurements were also removed if they were located within or near Sabine Lake and any points south of Corpus Christi Bay. Sabine Lake data were removed because the CDOM-rich water coming from the Neches River may bias the optical signal. Areas south of Corpus Christi Bay were left out of the input dataset because the area is relatively shallow, and the possibility for bottom reflectance contaminating the TSS signal is high. As a result, a total of 704 <italic>in-situ</italic> samples were selected for inputs for model development.</p>
<p>Overflights from the polar-orbiting satellite Aqua carrying National Aeronautics and Space Administration&#x00027;s (NASA)&#x00027;s Moderate-Resolution Imaging Spectroradiometer (MODIS) provide almost-daily images of estuaries and coastal areas. The MODIS sensor onboard NASA&#x00027;s Aqua satellite has been in orbit since 2002. MODIS was designed with 36 spectral channels to support observations of oceans, land, and clouds (McClain, <xref ref-type="bibr" rid="B14">2009</xref>). There are nine 1-km bands designed for ocean color observations in the visible to near-infrared (NIR) (412&#x02013;816 nm) portion of the electromagnetic spectrum. Over turbid waters of inland and coastal areas, however, the dynamic range of the sensor can be exceeded, leaving the actual signal to be unknown (Franz et al., <xref ref-type="bibr" rid="B10">2006</xref>). Many researchers are now using the land/cloud bands to quantify suspended sediment concentrations in coastal waters (Matthews, <xref ref-type="bibr" rid="B13">2011</xref>). The land (1 and 2) and cloud bands (3&#x02013;9) have spatial resolutions of 250 and 500 m, respectively. These land/cloud bands are less sensitive than the 1-km ocean color bands, have broader dynamic ranges and do not suffer from the problems of the l-km resolution ocean color bands (Franz et al., <xref ref-type="bibr" rid="B10">2006</xref>). Band 1 is optimal for detecting suspended sediment due to high reflectance from sediment in the water column around the red portion of the spectrum centered at 645 nm. Using the red portion of the spectrum, quantifying suspended sediments has little impact from phytoplankton pigments, such as CHL-&#x003B1;, in low concentrations (Bukata, <xref ref-type="bibr" rid="B1">1995</xref>). Recently, MODIS land bands have been used to quantify suspended sediments in coastal estuaries with 250 and 500-m MODIS data (Doxaran et al., <xref ref-type="bibr" rid="B6">2009</xref>; Feng et al., <xref ref-type="bibr" rid="B8">2014</xref>).</p>
<p>The 500-m MODIS-Aqua Surface-Reflectance Product (MYD09GA) was chosen for use in this study because it includes atmospherically corrected bands 1&#x02013;4, red, near infrared blue, and green, mostly used for ocean color applications and a cloud detection flag. The MYD09GA product is generated from MODIS Level 1B for land bands 1&#x02013;7 and are estimates of surface spectral reflectance corrected for both atmospheric scattering and absorption (Vermote and Kotchenova, <xref ref-type="bibr" rid="B26">2008</xref>). Doxaran et al. (<xref ref-type="bibr" rid="B6">2009</xref>) used the MYD09 and its counterpart MOD09 to quantify suspended sediments accurately in the Gironde estuary, France. Doxaran et al. (<xref ref-type="bibr" rid="B6">2009</xref>) developed an algorithm using a remote sensing reflectance (<italic>Rrs</italic>) ratio of Bands 1 and 2, red and near-infrared, respectively. In their study, they found that the atmospheric correction used by the land data community was sufficient to quantify suspended sediment concentration ranging from 77 to 2,182 g/m<sup>3</sup>. The combination of high spatial resolution, daily-repeat time, and a greater than 12-year data period, makes these land products ideal for creating an EDR of suspended sediments in estuaries and coastal water bodies.</p>
<p>Wind speed and direction data were extracted from the National Center for Environmental Prediction (NCEP) North American Regional Reanalysis model (NARR) (Mesinger et al., <xref ref-type="bibr" rid="B16">2006</xref>). These data were used for creation of the wind roses and the implementation of the sun glint algorithm. Over water, significant areas of remotely-sensed satellite imagery can be contaminated with sun glint, a disk-like spot that has higher reflectance values than the surrounding area in the satellite imagery. Fresnel reflection causes sun glint and its magnitude is dependent on a combination of complex interactions of surface roughness of the water that is influenced by wind speed and direction, and solar and sensor viewing geometries (Zhang and Wang, <xref ref-type="bibr" rid="B33">2010</xref>). MODIS data are routinely contaminated by sun glint because the satellite does not have a glint tilting avoidance strategy (Wang and Bailey, <xref ref-type="bibr" rid="B27">2001</xref>). The MYD09GA data product does not include a glint coefficient because its use is for land applications; thus, <italic>Rrs</italic> data over water is sometimes contaminated by sun glint. We, therefore, implemented the sun glint algorithm created by Wang and Bailey (<xref ref-type="bibr" rid="B27">2001</xref>). Use of this algorithm allowed for the removal of contaminated <italic>Rrs</italic> data from inputs into algorithm development and the removal of contaminated data in the TSS EDR created for this study. Wind speed data were extracted from the NCEP NARR (Mesinger et al., <xref ref-type="bibr" rid="B16">2006</xref>) for the locations and time of the MODIS image capture for input into the sun glint algorithm.</p>
<p>An independent dataset collected by Paudel and Montagna (<xref ref-type="bibr" rid="B20">2014</xref>) was used to validate the final TSS algorithm. These data were collected in Matagorda, San Antonio, and Corpus Christi Bays, and follow the same methods as the TCEQ SWQMIS. Sampling sites are spread over these estuaries and provide quarterly sampling from 2011 to 2013. In total, there were 137 cloud free data points that were available prior to sunglint filtering. Surface water samples for TSS and CHL-&#x003B1; were collected for every <italic>in situ</italic> location. Use of this independent dataset gave an impartial assessment of the final algorithm&#x00027;s accuracy and illustrated its robustness.</p>
</sec>
<sec sec-type="methods" id="s4">
<title>Methods</title>
<sec>
<title>Model development for transforming <italic>Rrs</italic> to TSS</title>
<p>The TSS reflectance model was developed using <italic>in situ</italic> and remote sensing reflectance data derived from the MYD09GA data product. These data products were downloaded using NASA&#x00027;s Reverb data discovery tool (<ext-link ext-link-type="uri" xlink:href="http://reverb.echo.nasa.gov/">http://reverb.echo.nasa.gov/</ext-link>) for each day data were available in the SQWMIS database. From the 709 <italic>in-situ</italic> samples, a total of 294 unique days of satellite data were available. Satellite data collected from Reverb spanned from 8-13-2002 to thru 5-3-2010. NASA&#x00027;s SeaDAS 7.0.1 software was used to extract atmospherically corrected reflectance, viewing geometries, and flags from MYD09GA files over the SWQMIS collection sites when concurrent collections were within 4 h of the overflight of the satellite. Atmospherically corrected reflectance data were then multiplied by pi to derive <italic>Rrs</italic> data.</p>
<p>After data extraction was complete, MYD09GA data were combined with SQWMIS <italic>in situ</italic> data. To avoid the influence of bottom reflectance and algal absorption on <italic>Rrs</italic> data, individual TSS measurements were removed from the calibration data if (1) the collection depth was &#x0003C;3 m unless TSS values were greater than 50 mg/l, and (2) the sample&#x00027;s CHL-&#x003B1; values were greater than 30 mg/l following suggestions from Bukata (<xref ref-type="bibr" rid="B1">1995</xref>). To avoid sun glint and other interference, data were removed if (1) it was flagged as cloud reflectance in the MYD09 dataset, (2) sun glint coefficient was &#x0003E;0.001 (Wang and Bailey, <xref ref-type="bibr" rid="B27">2001</xref>), and (3) sensor zenith angles were greater than or equal to 60 degrees. After these data had been filtered, 55 of the 704 data points remained for the development of the TSS model with TSS values ranging from 4 to 178 mg/l.</p>
<p>Spearman rank correlation coefficients were generated from <italic>Rrs</italic> Bands 1&#x02013;4 and combinations of <italic>Rrs</italic> ratios between TSS to determine the best candidates for inputs into the model. Spearman correlation was used because it is less influenced by outliers and can show non-linear relationships among data (Wilks, <xref ref-type="bibr" rid="B30">2011</xref>). Using the first three highest ranked correlation coefficients, linear and exponential regression models were fit to satellite and TSS data. Finally, the MYD09GA data over the <italic>in situ</italic> sites of Paudel and Montagna (<xref ref-type="bibr" rid="B20">2014</xref>) were extracted. The dataset was filtered following the same procedure as the calibration dataset with the difference that high CHL-&#x003B1; samples were not removed. This step was omitted as only one data point would have been excluded, and this portion of the data is used for validation only. The high CHL-&#x003B1; content collected in this sample shows how the algorithm is influenced in algal bloom conditions. After filtering had been applied to the validation set, 35 of the 137 data points were left in this validation dataset. The models&#x00027; fit to the calibration dataset was quantified using the Root Mean Squared Error (RMSE) and the R-squared metrics. The validation dataset was used to quantify the Mean Absolute Error (MAE) and mean bias of the model.</p>
</sec>
<sec>
<title>TSS time series development</title>
<p>The TSS reflectance model with the best performance was then applied to all available scenes of the MYD09GA land product over the study areas. These data were downloaded from <ext-link ext-link-type="uri" xlink:href="https://lpdaac.usgs.gov/">https://lpdaac.usgs.gov/</ext-link> and totaled 4,503 analyzed scenes for this study. Each image was then filtered for clouds, sun glint, and satellite geometries following the methodologies mentioned above, and daily cloud-free TSS maps were created at 500-m resolution. There was a maximum of 1,444 scenes of cloud free, glint free, and geometrically compatible imagery, however, on a pixel-by-pixel basis, this number varied due to the cloud mask and on average there were 1,226 scenes available for Corpus Christi Bay. Both individual scenes and composites were produced to show suspended sediment patterns in the estuaries (see <bold>Figure 5</bold>). Composite images were generated by computing medians and interquartile ranges (IQR) of satellite-derived TSS data for the entirety of the valid scenes of the satellite dataset. Seasonal comparisons were generated for Corpus Christi Bay for wind patterns to highlight the respective temporal variability, and show the different distributions and patterns of TSS for the different time periods. Here satellite data within 1 km of land are removed to avoid mixed pixels of land and water. Also, to avoid data contamination from bottom reflectance, any data occurring in water shallower than 1 m was removed.</p>
</sec>
<sec>
<title>Seasonal wind analysis</title>
<p>To investigate wind-wave resuspension, wind speed data at 10 m height for the study period were extracted from the NCEP NARR model (Mesinger et al., <xref ref-type="bibr" rid="B16">2006</xref>) over Corpus Christi Bay. The NARR&#x00027;s 32-km spatial and 3-h temporal resolutions were considered sufficient for this analysis. Wind data were analyzed to determine seasonal patterns. Data were split into seasonal wind regimes, and wind roses were plotted and compared to TSS composites for each regime. The period of November&#x02014;February is characterized by frontal passages and dominant northerly winds and is referred to as the frontal passages period. The March&#x02013;June period is characterized by weaker fronts at the beginning of the period and prevalent southeasterlies, and is referred to as the southeasterly period. The last period of July&#x02013;October is also characterized by prevalent southeasterlies, however, their magnitude is lower when compared to the southeasterly period and referred to as the quiet period (quiet period). Wind data were then plotted as wind roses for each regime. Composites of satellite-derived TSS patterns are compared to the related wind rose plots for the three identified wind regimes in <bold>Figure 6</bold> to determine if the wind speed and directional component influences the sediment distributions in the estuary.</p>
</sec>
</sec>
<sec id="s5">
<title>Results and discussion</title>
<sec>
<title>TSS model results and discussion</title>
<p>Spearman rank correlations identified the highest correlations between individual bands and band ratios with the TSS data collected by the TCEQ. The correlation analysis found that <italic>Rrs 645, Rrs 645</italic>/<italic>Rrs 555</italic>, and <italic>Rrs 645/Rrs 469</italic> had the highest correlations with TSS, at 0.65, 0.79, and 0.63, respectively. These radiometric values were then fit to derive TSS using linear and exponential models. In total there were six models tested three linear and three exponential (Table <xref ref-type="table" rid="T1">1</xref>). A comparison of the empirical models tested to derive TSS from <italic>Rrs</italic> and <italic>Rrs</italic> ratios are presented in Table <xref ref-type="table" rid="T1">1</xref> along with their fit statistics. The model with lowest MAE of validation dataset was selected to create the TSS EDR. As indicated in Table <xref ref-type="table" rid="T1">1</xref>, the best model was an exponential function using the band reflectance ratio of <italic>Rrs 645/ Rrs 555</italic>. The equation for this algorithm is:</p>
<disp-formula id="E1"><label>(1)</label><mml:math id="M1"><mml:mtable class="eqnarray" columnalign="right center left"><mml:mtr><mml:mtd><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mi>a</mml:mi></mml:mrow><mml:mrow><mml:mo>&#x0002A;</mml:mo></mml:mrow></mml:msup><mml:msup><mml:mrow><mml:mi>e</mml:mi></mml:mrow><mml:mrow><mml:mi>b</mml:mi><mml:mo>&#x0002A;</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:msup></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>Where y is the estimate for TSS in mg/l and x is the <italic>Rrs 645/Rrs 555</italic> reflectance ratio from the MYD09GA dataset. Coefficients a and b and their 95% confidence intervals were 1.696 (0.703, 2.689) and 3.562 (3.030, 4.094), respectively. The model fits quite well to the data with an R-square of 0.81 and RMSE of 16.1 (<italic>n</italic> &#x0003D; 55) for the TCEQ calibration data (Figure <xref ref-type="fig" rid="F3">3</xref>). The MAE for the validation dataset is 17.52 (<italic>n</italic> &#x0003D; 35) with a mean bias of &#x02212;13.40. Model fit to the data is illustrated in Figure <xref ref-type="fig" rid="F3">3</xref>. The uncertainty in this model is estimated to be 13% according to the RMSE compared to the range of the calibrated data. It is interesting to note that the model underestimates 66% of the validation dataset, however, these values still fall with the 95% confidence interval of the model fit. While exact cause of the bias is unknown, potential reasons for the bias include radiometer drift and slight differences in TSS processing. The model was fit to data spanning 2003 to 2010 and validation data was collected from 2011 to 2013, a drift in the satellite radiometer could account for this difference. Slight differences in the TSS sampling methods may also account for the differences.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Model fit statistics for calibration dataset and validation dataset error metrics for linear and exponential models for estimating TSS from <italic>Rrs</italic> and <italic>Rrs</italic> band ratios.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Fit type</bold></th>
<th valign="top" align="left"><bold>Band input</bold></th>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><bold>Calibration data</bold></th>
<th valign="top" align="center" colspan="2" style="border-bottom: thin solid #000000;"><bold>Validation data</bold></th>
</tr>
<tr>
<th/>
<th/>
<th valign="top" align="center"><bold>R-square</bold></th>
<th valign="top" align="center"><bold>RMSE</bold></th>
<th valign="top" align="center"><bold>MAE</bold></th>
<th valign="top" align="center"><bold>Mean bias</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Exponential</td>
<td valign="top" align="left"><italic>Rrs 645/Rrs 469</italic></td>
<td valign="top" align="center">0.46</td>
<td valign="top" align="center">27.06</td>
<td valign="top" align="center">22.74</td>
<td valign="top" align="center">&#x02212;18.39</td>
</tr>
<tr>
<td valign="top" align="left">Exponential</td>
<td valign="top" align="left"><italic>Rrs 645</italic></td>
<td valign="top" align="center">0.19</td>
<td valign="top" align="center">33.13</td>
<td valign="top" align="center">258.56</td>
<td valign="top" align="center">240.20</td>
</tr>
<tr>
<td valign="top" align="left">Exponential</td>
<td valign="top" align="left"><italic>Rrs 645/Rrs 555</italic></td>
<td valign="top" align="center">0.81</td>
<td valign="top" align="center">16.06</td>
<td valign="top" align="center">17.52</td>
<td valign="top" align="center">&#x02212;13.40</td>
</tr>
<tr>
<td valign="top" align="left">Linear</td>
<td valign="top" align="left"><italic>Rrs 645/Rrs 469</italic></td>
<td valign="top" align="center">0.45</td>
<td valign="top" align="center">27.22</td>
<td valign="top" align="center">24.63</td>
<td valign="top" align="center">&#x02212;19.64</td>
</tr>
<tr>
<td valign="top" align="left">Linear</td>
<td valign="top" align="left"><italic>Rrs 645</italic></td>
<td valign="top" align="center">0.28</td>
<td valign="top" align="center">31.15</td>
<td valign="top" align="center">43.22</td>
<td valign="top" align="center">24.03</td>
</tr>
<tr>
<td valign="top" align="left">Linear</td>
<td valign="top" align="left"><italic>Rrs 645/Rrs 555</italic></td>
<td valign="top" align="center">0.70</td>
<td valign="top" align="center">20.26</td>
<td valign="top" align="center">18.06</td>
<td valign="top" align="center">&#x02212;9.63</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Model produced by Equation 1 for the estimation of TSS from MYD09 reflectance with <italic>in situ</italic> data collected by TCEQ (black circles) and validation dataset (gray triangles) collected by Paudel and Montagna (<xref ref-type="bibr" rid="B20">2014</xref>).</p></caption>
<graphic xlink:href="fmars-04-00233-g0003.tif"/>
</fig>
<p>In order to gain more confidence in this model high concentration TSS measurements are needed in both the calibration and validation dataset to achieve a more robust quantification of error. While this model performs well over a range of TSS values in several Texas estuaries, more validation data is needed to quantify the true error of the model. Individual models tuned for individual estuaries may reduce the error using the same method, but this was not possible due to an insufficient number of <italic>in situ</italic> data points within each estuary.</p>
<p>Usage of this algorithm for deriving TSS from <italic>Rrs</italic> will cause over- and under-estimations of TSS in high concentrations of CDOM and CHL-&#x003B1;, respectively. An example is included in the validation data set where a high concentrations of CHL-&#x003B1; causes the algorithm to underestimate the true concentration of sediment in the water (Figure <xref ref-type="fig" rid="F3">3</xref>). The TSS value of 133.7 mg/l in the validation data set occurred during an algal bloom with a CHL-&#x003B1; density of 38.4 mg/l. For this case, the modeled TSS was 59.8 mg/l, which underestimates the actual measurement by 73.9 mg/l. While this is a large error, algal blooms in these estuarine waters are infrequent events. To further illustrate CHL-&#x003B1; influence on the model a sensitivity analysis was conducted on CHL-&#x003B1; vs. modeled TSS residuals for both the calibration and validation datasets (Figure <xref ref-type="fig" rid="F4">4</xref>). We found no systematic influence of CHL-&#x003B1; on predicted TSS values, except for the aforementioned high concentration sample of CHL-&#x003B1;. For the majority of the year, the suspended sediments in these Texas estuaries are mostly composed of suspended inorganic particles (McKee and Baskaran, <xref ref-type="bibr" rid="B15">1999</xref>). Thus, the influence of algal blooms will only impact the EDR created from this algorithm for a small percentage of the time allowing for analysis of suspended sediment dynamics in Texas estuaries. The influence of CDOM on the algorithm could not be quantified because neither TCEQ nor Paudel and Montagna (<xref ref-type="bibr" rid="B20">2014</xref>) collected such measurements. With these limitations, this algorithm shows promise in creating a TSS EDR for Texas estuaries.</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Residual TSS from TSS model plotted against CHL-a sampled concurrently for both the calibration (triangles) and validation dataset (circles). Calibration and validation datasets are colored based on in situ TSS-values.</p></caption>
<graphic xlink:href="fmars-04-00233-g0004.tif"/>
</fig>
<p>Development of this model enables the creation of synoptic suspended sediment maps in Texas estuaries. Figure <xref ref-type="fig" rid="F5">5</xref> compares a MODIS-Aqua true color image with estimated TSS concentrations for the same scene, the Texas estuaries and coast, following the passage of a cold front. The largest TSS concentrations along the coast are observed for Galveston Bay and Matagorda Bay.</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>MODIS-Aqua 500-m True Color RGB image and example of output from TSS algorithm for same scene following the passage of a cold front on January 10th 2006.</p></caption>
<graphic xlink:href="fmars-04-00233-g0005.tif"/>
</fig>
</sec>
<sec>
<title>TSS patterns and forcings for corpus christi bay</title>
<p>TSS composites and wind roses for Corpus Christi Bay are presented in Figure <xref ref-type="fig" rid="F6">6</xref>. During the frontal passages period, median, and IQR TSS are higher in the southern portion of the estuary, windward of the predominant north-northeast wind direction. Median TSS and IQR values increase as the fetch lengths increase. The similar patterns of both IQR and median TSS with values increasing with fetch length and highest on the windward side of the estuary suggest that wind-wave resuspension from frontal passages is the dominant process controlling suspended sediment concentrations during this period. These patterns are similar to those reported by Shideler (<xref ref-type="bibr" rid="B23">1984</xref>) during the same wind regime. TSS median values are the lowest during this period when compared to other wind regimes in this estuary, possibly resulting from the combination of low wind speeds between frontal passages and a relatively low frequency of such events. The majority of wind speeds during this period are &#x0003C;7.5 m/s (Figure <xref ref-type="fig" rid="F6">6</xref>) while there are typically 10 frontal passages during the frontal passages period (Ward, <xref ref-type="bibr" rid="B28">1997</xref>). Low wind speeds between frontal passages are likely not significant enough to generate waves that impart sufficient bed shear stress for resuspension as the bay is 4 m deep on average, the deepest along the Texas coast. Another area that exhibits a behavior similar to the southern portion of the estuary during the same period are the dredge spoil deposition sites along the ICW (Figure <xref ref-type="fig" rid="F6">6</xref>). Elevated median TSS and higher IQR values compared to the rest of the bay occur at these locations. Yet these areas fetch lengths are considerably smaller in the direction of the prevalent wind. These areas have more unconsolidated dredged sediments and are shallower than the rest of the estuary thus sediments are more readily suspended.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Corpus Christi Bay TSS Median and IQR with corresponding wind rose for each wind regime. Red rectangular polygons are dredge spoil deposition sites.</p></caption>
<graphic xlink:href="fmars-04-00233-g0006.tif"/>
</fig>
<p>Another factor that may influence the measured patterns is bias due to cloud presence (Eleveld et al., <xref ref-type="bibr" rid="B7">2014</xref>). Higher wind periods may be under represented compared to the actual resuspension events that occur because the majority of cold fronts are accompanied by cloud-cover that obscures the satellites view of the estuary. The frontal passages period composites of Corpus Christi Bay support Shideler&#x00027;s (<xref ref-type="bibr" rid="B23">1984</xref>) hypothesis that Nueces Bay is a fluvial sediment storage basin having a control valve activated by strong northerly wind. Suspended sediments are released into Corpus Christi Bay during frontal passages as indicated by the higher median and IQR TSS values near the entrance to Nueces Bay. These higher TSS values compared to those of the surrounding area are consistent with suspended sediments spilling into Corpus Christi Bay when strong wind is blowing for a prolonged period from the north.</p>
<p>The influence of tides is more difficult to identify using the composite patterns, however, some observations can be made. Lower IQR values are observed along the length of the Corpus Christi Ship Channel (Figure <xref ref-type="fig" rid="F6">6</xref>). Additionally, median and IQR values are lower than surrounding values at the entrance of the Corpus Christi Ship Channel into the main portion of the bay. Both observations are consistent with flood plumes that are lower in suspended sediment concentration originating in the Gulf of Mexico. These lower values indicate that, for Corpus Christi Bay, inflow of Gulf waters reduces the concentration of sediment within and surrounding the ship channel but not for the bay at large. Export of suspended sediments from the Bay to the Gulf of Mexico is evident from an ebb plume at the exit of the ship channel into the Gulf of Mexico for all wind regimes with the largest plumes observed for the frontal passages period (Figure <xref ref-type="fig" rid="F6">6</xref>). Higher TSS concentrations are observed along the shorelines of the Gulf of Mexico for the frontal passages period as compared to the other wind regimes consistent with strong offshore northerly winds often accompanying frontal passages. It is hypothesized that wave action generated by the southerly winds preceding frontal passages results in resuspension of nearshore sediments and that offshore northerly winds then transport the suspended sediments further offshore.</p>
<p>The southeasterly period has the highest concentrations of median and IQR TSS values. Similar to the frontal passages period, both Median and IQR TSS values increase along fetch length in the dominant wind direction. Highest median and IQR TSS values are located along and near the windward shore in the northwestern quadrant of Corpus Christi Bay. This area is where the predominant and prevalent wind of this wind regime has the longest fetch lengths, &#x0007E;18 km. Similarly to the frontal passages period, this pattern indicates that wind-wave resuspension is the dominant process influencing estuarine suspended sediment distribution during this period. The median TSS composite resembles the pattern in Shideler&#x00027;s (<xref ref-type="bibr" rid="B23">1984</xref>) southeasterly mode. Similar to Shideler&#x00027;s (<xref ref-type="bibr" rid="B23">1984</xref>) observations, the southeastern quadrant of Corpus Christi Bay has very low concentrations of TSS. These low TSS concentrations are attributed to a flux of sediment free waters from the Upper Laguna Madre being pushed into the southern portion of Corpus Christi Bay by the southeasterly wind.</p>
<p>Dredge spoil placement sites exhibit similar behavior to those during the frontal passages period. The dredge spoil area located on the ICW has higher median and IQR TSS values than the surrounding area (Figure <xref ref-type="fig" rid="F6">6</xref>). These higher values during both the frontal passages period and southeasterly period illustrate that these areas are more prone to wind-wave resuspension. The dredge spoil site next to the entrance of the port of Corpus Christi also has higher median and IQR values than those of the surrounding area.</p>
<p>During the quiet period (Figure <xref ref-type="fig" rid="F6">6</xref>), the Corpus Christi Bay median and IQR values are relatively uniform. Areas near and along the windward shore have slightly elevated values when compared to the rest of Corpus Christi Bay. The low concentrations of median and IQR TSS values are compatible with a wave dominated TSS with less sediment than during any of the other time periods. The IQR pattern also displays the lowest values indicating consistently low TSS concentrations during the quiet period. The highest concentrations of median TSS values are located over the dredge spoil deposition area near the Port of Corpus Christi similar to during the southeasterly period.</p>
</sec>
<sec>
<title>Potential limitations of the study</title>
<p>It is important to note that the seasonal median TSS composites may be biased by cloud presence obscuring satellite view of estuaries and thus providing lower representation of scenes associated with frontal passages, southeasterlies, sea breeze, and thunderstorms. While these biases likely influence total estimated suspended sediment concentrations, the overall seasonal changes in resuspended sediment concentration patterns are unlikely to be substantially affected by these biases and are still clearly identifiable permitting assessment of the importance of the respective forcing mechanisms.</p>
<p>Another potential limitation of this study is the influence that CDOM and high CHL-&#x003B1; have on the reflectance ratio algorithm. Areas with high CDOM concentrations cause overestimates of TSS concentrations while areas of high CHL-&#x003B1; cause underestimates of TSS concentrations. This bias is believed to be minimal for Corpus Christi Bay.</p>
</sec>
</sec>
<sec sec-type="conclusions" id="s6">
<title>Conclusions</title>
<p>A TSS algorithm was created to quantify suspended sediment in estuaries of the Texas Coast based on MODIS reflectance data and a comparison with two <italic>in situ</italic> data sets collected in the study area during the period 2002&#x02013;2014. The algorithm includes filtering of the data for geometries, sun glint, and water depth, and an exponential function that gives the best fit for TSS concentrations ranging from 4 to 176 mg/l. After calibration based on a long-term TCEQ data set, the algorithm was further validated with an independent data set, acquired outside of the model&#x00027;s calibration period. However, we did find that the algorithm does not provide accurate results for cases with CHL-&#x003B1; values greater than 30 mg/l. Future users of the model and TSS EDR generated for this study should be aware of this and other limitations of the method.</p>
<p>The model was applied to create an EDR of suspended sediments for Corpus Christi Bay. Analysis of the EDR reveals that the bay is influenced by wind-wave resuspension with different patterns during the predominant northerlies and prevalent southeasterlies seasons. The impact of dredging is apparent in long-term TSS patterns as concentrations of suspended sediments over dredge spoil disposal sites are higher and more variable than surrounding areas, which is most likely due to their less consolidated nature and shallower depths requiring less wave energy for sediment resuspension. This study highlights the advantage of how long-synoptic time series of TSS can be used to elucidate the major drivers of suspended sediments in estuaries.</p>
</sec>
<sec id="s7">
<title>Author contributions</title>
<p>AR wrote the article, collected field data, developed algorithm, and performed analysis. PT aided in algorithm development, analysis of data, and writing of article. JG aided in algorithm development, analysis of data, and editing of text.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p></sec>
</sec>
</body>
<back>
<ack><p>The authors would like to thank the reviewers, Sachidananda Mishtra and Matthew Lewis for their helpful and constructive comments that greatly contributed to improving the final version of the paper.</p>
</ack>
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<fn-group>
<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> This study was supported by grant number NA09NMF4720179 from the National Oceanic and Atmospheric Administration under the Comparative Assessment of Marine Ecosystem (CAMEO) program, and National Aeronautics and Space Administration Headquarters under the NASA Earth and Space Science Fellowship Program&#x02014;Grant NNX12AO09H. Partial support was also provided by the Harte Research Institute for Gulf of Mexico Studies at Texas A&#x00026;M University-Corpus Christi. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</p>
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