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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2017.00104</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Uncertainty in Ocean-Color Estimates of Chlorophyll for Phytoplankton Groups</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Brewin</surname> <given-names>Robert J. W.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/403713/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ciavatta</surname> <given-names>Stefano</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/319870/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Sathyendranath</surname> <given-names>Shubha</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/373399/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Jackson</surname> <given-names>Thomas</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/415261/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Tilstone</surname> <given-names>Gavin</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Curran</surname> <given-names>Kieran</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Airs</surname> <given-names>Ruth L.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Cummings</surname> <given-names>Denise</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Brotas</surname> <given-names>Vanda</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/418368/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Organelli</surname> <given-names>Emanuele</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/418500/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Dall&#x00027;Olmo</surname> <given-names>Giorgio</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/427563/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Raitsos</surname> <given-names>Dionysios E.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Plymouth Marine Laboratory</institution> <country>Plymouth, UK</country></aff>
<aff id="aff2"><sup>2</sup><institution>National Centre of Earth Observation, Plymouth Marine Laboratory</institution> <country>Plymouth, UK</country></aff>
<aff id="aff3"><sup>3</sup><institution>Faculdade de Ci&#x000EA;ncias, Marine and Environmental Sciences Centre, Universidade de Lisboa</institution> <country>Lisboa, Portugal</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Chris Bowler, &#x000C9;cole Normale Sup&#x000E9;rieure, France</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Ramaiah Nagappa, National Institute of Oceanography, India; Salvatore Marullo, National Agency For New Technologies, Energy and Sustainable Economic Development, Italy</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Robert J. W. Brewin <email>robr&#x00040;pml.ac.uk</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Ocean Observation, a section of the journal Frontiers in Marine Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>13</day>
<month>04</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>4</volume>
<elocation-id>104</elocation-id>
<history>
<date date-type="received">
<day>13</day>
<month>01</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>03</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Brewin, Ciavatta, Sathyendranath, Jackson, Tilstone, Curran, Airs, Cummings, Brotas, Organelli, Dall&#x00027;Olmo and Raitsos.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Brewin, Ciavatta, Sathyendranath, Jackson, Tilstone, Curran, Airs, Cummings, Brotas, Organelli, Dall&#x00027;Olmo and Raitsos</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Over the past decade, techniques have been presented to derive the community structure of phytoplankton at synoptic scales using satellite ocean-color data. There is a growing demand from the ecosystem modeling community to use these products for model evaluation and data assimilation. Yet, from the perspective of an ecosystem modeler these products are of limited use unless: (i) the phytoplankton products provided by the remote-sensing community match those required by the ecosystem modelers; and (ii) information on per-pixel uncertainty is provided to evaluate data quality. Using a large dataset collected in the North Atlantic, we re-tune a method to estimate the chlorophyll concentration of three phytoplankton groups, partitioned according to size [pico- (&#x0003C;2 &#x003BC;m), nano- (2&#x02013;20 &#x003BC;m) and micro-phytoplankton (&#x0003E;20 &#x003BC;m)]. The method is modified to account for the influence of sea surface temperature, also available from satellite data, on model parameters and on the partitioning of microphytoplankton into diatoms and dinoflagellates, such that the phytoplankton groups provided match those simulated in a state of the art marine ecosystem model (the European Regional Seas Ecosystem Model, ERSEM). The method is validated using another dataset, independent of the data used to parameterize the method, of more than 800 satellite and <italic>in situ</italic> match-ups. Using fuzzy-logic techniques for deriving per-pixel uncertainty, developed within the ESA Ocean Colour Climate Change Initiative (OC-CCI), the match-up dataset is used to derive the root mean square error and the bias between <italic>in situ</italic> and satellite estimates of the chlorophyll for each phytoplankton group, for 14 different optical water types (OWT). These values are then used with satellite estimates of OWTs to map uncertainty in chlorophyll on a per pixel basis for each phytoplankton group. It is envisaged these satellite products will be useful for those working on the validation of, and assimilation of data into, marine ecosystem models that simulate different phytoplankton groups.</p>
</abstract>
<kwd-group>
<kwd>phytoplankton</kwd>
<kwd>size</kwd>
<kwd>function</kwd>
<kwd>chlorophyll</kwd>
<kwd>ocean-color</kwd>
<kwd>uncertainty</kwd>
</kwd-group>
<counts>
<fig-count count="12"/>
<table-count count="5"/>
<equation-count count="17"/>
<ref-count count="130"/>
<page-count count="22"/>
<word-count count="15737"/>
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</front>
<body>
<sec sec-type="intro" id="s1">
<title>1. Introduction</title>
<p>The size structure and taxonomic composition of phytoplankton influence many processes in phytoplankton biology, marine biogeochemistry and marine ecology (Chisholm, <xref ref-type="bibr" rid="B28">1992</xref>; Raven, <xref ref-type="bibr" rid="B94">1998</xref>; Le Qu&#x000E9;r&#x000E9; et al., <xref ref-type="bibr" rid="B64">2005</xref>; Mara&#x000F1;&#x000F3;n, <xref ref-type="bibr" rid="B69">2009</xref>, <xref ref-type="bibr" rid="B70">2015</xref>; Finkel et al., <xref ref-type="bibr" rid="B42">2010</xref>). Photosynthesis, growth, light absorption, nutrient uptake, carbon export, and the transfer of energy through the marine food chain, are all influenced by phytoplankton community structure (Platt and Denman, <xref ref-type="bibr" rid="B87">1976</xref>, <xref ref-type="bibr" rid="B88">1977</xref>, <xref ref-type="bibr" rid="B89">1978</xref>; Morel and Bricaud, <xref ref-type="bibr" rid="B82">1981</xref>; Prieur and Sathyendranath, <xref ref-type="bibr" rid="B90">1981</xref>; Probyn, <xref ref-type="bibr" rid="B91">1985</xref>; Geider et al., <xref ref-type="bibr" rid="B45">1986</xref>; Legendre and LeFevre, <xref ref-type="bibr" rid="B66">1991</xref>; Maloney and Field, <xref ref-type="bibr" rid="B68">1991</xref>; Chisholm, <xref ref-type="bibr" rid="B28">1992</xref>; Sunda and Huntsman, <xref ref-type="bibr" rid="B110">1997</xref>; Raven, <xref ref-type="bibr" rid="B94">1998</xref>; Laws et al., <xref ref-type="bibr" rid="B63">2000</xref>; Ciotti et al., <xref ref-type="bibr" rid="B32">2002</xref>; Bricaud et al., <xref ref-type="bibr" rid="B21">2004</xref>; Devred et al., <xref ref-type="bibr" rid="B38">2006</xref>; Guidi et al., <xref ref-type="bibr" rid="B49">2009</xref>; Briggs et al., <xref ref-type="bibr" rid="B22">2011</xref>). In the face of considerable challenges (Shimoda and Arhonditsis, <xref ref-type="bibr" rid="B106">2016</xref>), growing emphasis has been placed on the representation of biogeochemistry in ecosystem models by explicitly incorporating different phytoplankton groups as state variables, often partitioned according to their size or taxonomic composition (Aumont et al., <xref ref-type="bibr" rid="B5">2003</xref>; Blackford et al., <xref ref-type="bibr" rid="B8">2004</xref>; Le Qu&#x000E9;r&#x000E9; et al., <xref ref-type="bibr" rid="B64">2005</xref>; Kishi et al., <xref ref-type="bibr" rid="B58">2007</xref>; Marinov et al., <xref ref-type="bibr" rid="B73">2010</xref>; Ward et al., <xref ref-type="bibr" rid="B122">2012</xref>; Butensch&#x000F6;n et al., <xref ref-type="bibr" rid="B25">2016</xref>). With this aspiration comes a demand for observations on phytoplankton groups (e.g., for model validation and data assimilation) that is not being met with current <italic>in situ</italic> observations that are sparse in time and space. To address the issue of data availability, the past decade has seen many attempts to estimate phytoplankton groups using satellite remote-sensing (IOCCG, <xref ref-type="bibr" rid="B55">2014</xref>), which is capable of viewing the ocean with high temporal and spatial coverage.</p>
<p>Current techniques to estimate phytoplankton groups using satellite data can be partitioned into three categories: spectral, abundance and ecological approaches (Nair et al., <xref ref-type="bibr" rid="B85">2008</xref>; Brewin et al., <xref ref-type="bibr" rid="B14">2011b</xref>; IOCCG, <xref ref-type="bibr" rid="B55">2014</xref>). Spectral-based approaches seek to use the optical signatures of the phytoplankton groups directly for their detection from space. Abundance-based approaches invoke relationships between the phytoplankton groups and some index of phytoplankton abundance or biomass (e.g., chlorophyll concentration) that can be retrieved from satellites. Ecological-based approaches use ocean-color together with additional environmental data (e.g., sea surface temperature (SST), irradiance, wind) that can also be retrieved from satellite to identify ecological niches where particular phytoplankton communities may be found. Spectral-based approaches are more direct as they target known optical signatures, whereas abundance-based and ecological-based approaches are indirect, in that they use satellite remote-sensing as a means to extrapolate known relationships between the phytoplankton groups and a property that can by derived accurately from space (e.g., chlorophyll concentration, SST). Though it would appear more sensible to use a direct approach, issues with spectral-based techniques can arise when the signal-to-noise ratio in the ocean-color data is too low to detect the targeted signature (Garver et al., <xref ref-type="bibr" rid="B44">1994</xref>; Wang et al., <xref ref-type="bibr" rid="B120">2005</xref>), when the phytoplankton group being targeted has a similar optical signature to other groups, when the spectral signatures are not known sufficiently well, or when the spectral resolution is not adequate for detecting the target signature. In such cases, an indirect method (e.g., ecological or abundance based) would be more suitable. Future ocean-color missions will help address some of these issues through improved accuracy and spectral resolution. For instance, the recently launched Ocean and Land Color Instrument (OLCI) on-board ESA&#x00027;s Sentinel-3a satellite offers more spectral wavebands than its predecessor (MERIS), and NASA&#x00027;s planned Pre-Aerosol Clouds and ocean Ecosystem (PACE) mission will aim to provide hyperspectral ocean-color data, improving the potential for phytoplankton group retrievals. For further details on all of these methods, the reader is referred to the works of Nair et al. (<xref ref-type="bibr" rid="B85">2008</xref>), Brewin et al. (<xref ref-type="bibr" rid="B14">2011b</xref>), De Moraes Rudorff and Kampel (<xref ref-type="bibr" rid="B37">2012</xref>), IOCCG (<xref ref-type="bibr" rid="B55">2014</xref>), and Mouw et al. (<xref ref-type="bibr" rid="B84">2017</xref>). Recently, efforts have been made to combine abundance and ecological-based approaches, for instance, Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>) and Ward (<xref ref-type="bibr" rid="B121">2015</xref>) modified the relationship between the chlorophyll concentration of the phytoplankton groups and total chlorophyll (abundance-based) according to the environmental (ecological-based) conditions (e.g., temperature or light availability).</p>
<p>Phytoplankton group-specific satellite products are now being used for the validation of (Ward et al., <xref ref-type="bibr" rid="B122">2012</xref>; Hirata et al., <xref ref-type="bibr" rid="B52">2013</xref>; Hashioka et al., <xref ref-type="bibr" rid="B50">2013</xref>; Rousseaux et al., <xref ref-type="bibr" rid="B98">2013</xref>; Vogt et al., <xref ref-type="bibr" rid="B119">2013</xref>; Holt et al., <xref ref-type="bibr" rid="B53">2014</xref>; de Mora et al., <xref ref-type="bibr" rid="B36">2016</xref>; Laufk&#x000F6;tter et al., <xref ref-type="bibr" rid="B62">2016</xref>), or assimilation of data into (Xiao and Friedrichs, <xref ref-type="bibr" rid="B129">2014</xref>), ecosystem models. However, there are two challenges that modelers face when undertaking such analyses (Bracher et al., <xref ref-type="bibr" rid="B10">2017</xref>). Firstly, there is often a mismatch between phytoplankton products provided by the remote-sensing community and those required by the ecosystem modelers. These difficulties arise in cases where a phytoplankton group adopted by the ecosystem modeler has similar optical properties to other phytoplankton groups, meaning they may not be detected directly using spectral-based methods, or the phytoplankton group does not co-vary in a predictable manner with variables amenable from remote-sensing, limiting abundance-based and ecological-based methods and rendering the use of satellite products difficult. Greater dialog between ecosystem modelers and the remote-sensing community is required to bridge this mismatch where feasible.</p>
<p>The second challenge is associating a level of uncertainty to the satellite phytoplankton group products, ideally on a per-pixel basis (per grid cell of the model). This is an essential prerequisite for both ecosystem model validation and data assimilation. If the uncertainties in the satellite products are too high they may not be useful for validation and may have little impact on a data assimilation scheme, since the target for data assimilation is to modify model simulations such that they agree with the observations within their uncertainties (e.g., Gregg et al., <xref ref-type="bibr" rid="B48">2009</xref>; Ford et al., <xref ref-type="bibr" rid="B43">2012</xref>; Ciavatta et al., <xref ref-type="bibr" rid="B30">2014</xref>, <xref ref-type="bibr" rid="B29">2016</xref>). Whereas many approaches have been proposed to derive satellite phytoplankton group products (IOCCG, <xref ref-type="bibr" rid="B55">2014</xref>), few provide estimates of per-pixel uncertainty.</p>
<p>There are two methods commonly used to estimate uncertainty in ocean-color products: error propagation, or model-based uncertainties, and comparison of satellite estimates with <italic>in situ</italic> data (validation). Error propagation typically involves propagation of errors from input to output products, knowing the uncertainties in the input and model parameters. These techniques have been used for estimating uncertainties in chlorophyll concentration and inherent optical properties (Maritorena et al., <xref ref-type="bibr" rid="B74">2010</xref>; Lee et al., <xref ref-type="bibr" rid="B65">2011</xref>; Werdell et al., <xref ref-type="bibr" rid="B125">2013a</xref>), and for some satellite phytoplankton group products (Kostadinov et al., <xref ref-type="bibr" rid="B60">2009</xref>, <xref ref-type="bibr" rid="B59">2016</xref>; Roy et al., <xref ref-type="bibr" rid="B99">2013</xref>; Brewin et al., <xref ref-type="bibr" rid="B20">2017</xref>). In addition to estimating per-pixel uncertainty, these techniques can be very useful for understanding the sensitivity of model parameters and model inputs on the output products (Roy et al., <xref ref-type="bibr" rid="B99">2013</xref>; Kostadinov et al., <xref ref-type="bibr" rid="B59">2016</xref>; Brewin et al., <xref ref-type="bibr" rid="B20">2017</xref>).</p>
<p>In a user consultation of ocean-color products, conducted as part of the ESA Ocean Colour Climate Change Initiative (OC-CCI), there seemed to be a preference from ecosystem modelers for estimates of uncertainties based on comparison with <italic>in situ</italic> data, rather than model-based uncertainties (Sathyendranath, <xref ref-type="bibr" rid="B101">2011</xref>). For most techniques, satellite phytoplankton group products have been validated with <italic>in situ</italic> data (see Table 3 of Mouw et al., <xref ref-type="bibr" rid="B84">2017</xref>). However, this information is typically provided as a single statistic (e.g., root mean square error), which can be difficult to convert to a per-pixel error, considering uncertainties are likely to vary with the environmental conditions and the magnitude of the product. Furthermore, the distribution of data used in validation datasets may not be an adequate representation of the spatial and temporal variability in the region under study.</p>
<p>To overcome these issues, Moore et al. (<xref ref-type="bibr" rid="B78">2001</xref>, <xref ref-type="bibr" rid="B79">2009</xref>, <xref ref-type="bibr" rid="B80">2012</xref>) proposed the use of an optical classification of pixels, together with fuzzy-logic statistics, to estimate per-pixel errors in satellite ocean-color products based on comparison with <italic>in situ</italic> data. In this approach, satellite and <italic>in situ</italic> match-ups are segregated into dominant optical water types (ranging from oligotrophic to turbid waters), then error statistics are computed for each dominant optical water-type. An ocean-color spectrum (at a given pixel) is then compared with all the optical water type spectra to determine its fuzzy membership. The fuzzy membership is then used to compute the error by weighting the errors in each dominant optical water type according to the fuzzy membership. This approach can, to a certain degree, overcome issues with the distribution of data used in the validation, and account for uncertainties varying with the conditions and the magnitude of the product. It has been adopted in the ESA OC-CCI project and is used to provide per-pixel errors (root mean square error and bias) for all OC-CCI products, including: chlorophyll, diffuse attenuation coefficient, and the inherent optical properties of oceanic waters. However, this approach has not been applied to satellite phytoplankton group products.</p>
<p>The Copernicus Marine Environment Monitoring Service (CMEMS) project &#x0201C;Toward Operational Size-class Chlorophyll Assimilation (TOSCA)&#x0201D; seeks to address these issues by: (i) providing remotely-sensed products on phytoplankton groups that map onto those simulated by the European Regional Seas Ecosystem model (ERSEM; Butensch&#x000F6;n et al., <xref ref-type="bibr" rid="B25">2016</xref>), which is the ecosystem model adopted in this project; and (ii) provide uncertainty estimates for the remotely-sensed products on a per-pixel basis, based on <italic>in situ</italic> match-ups (the preferred choice for ecosystem modelers; Sathyendranath, <xref ref-type="bibr" rid="B101">2011</xref>). In this paper, we re-tuned an abundance-based method (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>, <xref ref-type="bibr" rid="B17">2015</xref>) to estimate the chlorophyll concentration of three phytoplankton groups, partitioned according to size, from satellite data in the North Atlantic. The abundance-based method was modified to account for the influence of SST (i.e., combining the method with an ecological-approach), and partition microphytoplankton into diatoms and dinoflagellates, so that the phytoplankton groups provided by the satellite approach match those simulated by ERSEM. Using an optical classification of pixels with fuzzy-logic statistics (Moore et al., <xref ref-type="bibr" rid="B78">2001</xref>, <xref ref-type="bibr" rid="B79">2009</xref>, <xref ref-type="bibr" rid="B80">2012</xref>; Jackson and Sathyendranath, <xref ref-type="bibr" rid="B56">2015</xref>), we present a method for deriving per-pixel uncertainty for each phytoplankton group based on a validation dataset of satellite and <italic>in situ</italic> match-ups, which is independent of the data used to parameterize the method.</p>
</sec>
<sec sec-type="methods" id="s2">
<title>2. Methods</title>
<sec>
<title>2.1. Study area: the north atlantic</title>
<p>The chosen study site was the North Atlantic (Figure <xref ref-type="fig" rid="F1">1</xref>), spanning 46&#x000B0; W to 13&#x000B0; E and 20&#x000B0; N to 66&#x000B0; N, and categorized by the CMEMS Ocean Colour Thematic Assembley Centre (OCTAC) as the Atlantic (ATL) region. This region encompasses a range of bio-optical conditions from clear, deep open-ocean waters to shallower optically-complex shelf seas. We chose this site because of two factors: (i) it is a region that has been extensively sampled over the past few decades, resulting in a relatively large number of <italic>in situ</italic> observations on phytoplankton groups when compared with other regions of the ocean; and (ii) it has been subject to many studies on marine ecosystem modeling (e.g., Holt et al., <xref ref-type="bibr" rid="B53">2014</xref>). The North Atlantic is also home to one of the largest spring phytoplankton blooms on the planet (Ducklow and Harris, <xref ref-type="bibr" rid="B40">1993</xref>) and is known as a major region for the biological drawdown of seawater CO<sub>2</sub> (Takahashi et al., <xref ref-type="bibr" rid="B111">2002</xref>, <xref ref-type="bibr" rid="B112">2009</xref>) and primary production (Tilstone et al., <xref ref-type="bibr" rid="B114">2014</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>Locations of High Performance Liquid Chromatography (HPLC) and size-fractionated filtration (SFF) <italic><bold>in situ</bold></italic> data (&#x0003C;20 m depth) used in this study (CMEMS OCTAC ATL region)</bold>. Background color show pixel-by-pixel correlation coefficients (<italic>r</italic>) of monthly Sea Surface Temperature (ESA SST products) and monthly average light in the mixed-layer between 2000 and 2010 [computed using Equation 11 of Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>) with a monthly climatology of mixed-layer depth (de Boyer Mont&#x000E9;gut et al., <xref ref-type="bibr" rid="B35">2004</xref>), monthly photosynthetic available radiation products from NASA SeaWiFS (<ext-link ext-link-type="uri" xlink:href="http://oceancolor.gsfc.nasa.gov/">http://oceancolor.gsfc.nasa.gov/</ext-link>), and <italic>K</italic><sub>d</sub> estimated from Morel et al. (<xref ref-type="bibr" rid="B83">2007</xref>) using OC-CCI monthly chlorophyll products].</p></caption>
<graphic xlink:href="fmars-04-00104-g0001.tif"/>
</fig>
</sec>
<sec>
<title>2.2. Statistical tests</title>
<p>To compare the <italic>in situ</italic> and satellite chlorophyll concentrations, we used the root mean square error (&#x003A8;) and bias (&#x003B4;), consistent with the statistical tests adopted in the ESA OC-CCI project and used to provide per-pixel errors. The &#x003A8; and &#x003B4; values were computed according to</p>
<disp-formula id="E1"><label>(1)</label><mml:math id="M1"><mml:mrow><mml:mi>&#x003A8;</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mfrac><mml:mn>1</mml:mn><mml:mi>N</mml:mi></mml:mfrac><mml:mstyle displaystyle='true'><mml:munderover><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mrow><mml:msup><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msubsup><mml:mi>X</mml:mi><mml:mi>i</mml:mi><mml:mi>E</mml:mi></mml:msubsup><mml:mo>&#x02212;</mml:mo><mml:msubsup><mml:mi>X</mml:mi><mml:mi>i</mml:mi><mml:mi>M</mml:mi></mml:msubsup></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow><mml:mn>2</mml:mn></mml:msup></mml:mrow></mml:mstyle></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>and</p>
<disp-formula id="E2"><label>(2)</label><mml:math id="M2"><mml:mrow><mml:mi>&#x003B4;</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mi>N</mml:mi></mml:mfrac><mml:mstyle displaystyle='true'><mml:munderover><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msubsup><mml:mi>X</mml:mi><mml:mi>i</mml:mi><mml:mi>E</mml:mi></mml:msubsup><mml:mo>&#x02212;</mml:mo><mml:msubsup><mml:mi>X</mml:mi><mml:mi>i</mml:mi><mml:mi>M</mml:mi></mml:msubsup></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mrow></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where <italic>X</italic> is the variable (chlorophyll concentration) and <italic>N</italic> is the number of samples. The superscript <italic>E</italic> denotes the estimated variable (e.g., satellite estimate) and <italic>M</italic> the measured variable (e.g., <italic>in situ</italic>). Note that the unbiased root mean square error (&#x00394;) can be computed from &#x003A8; and &#x003B4; according to <inline-formula><mml:math id="M100"><mml:mrow><mml:mi>&#x00394;</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:msup><mml:mi>&#x003A8;</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mo>&#x02212;</mml:mo><mml:msup><mml:mi>&#x003B4;</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mo stretchy='false'>)</mml:mo></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. In addition we also used the Pearson linear correlation coefficient (<italic>r</italic>), to see how well estimated variables and measured variables are correlated. All statistical tests were performed in log<sub>10</sub> space, considering that the chlorophyll concentration is approximately log-normally distributed (Campbell, <xref ref-type="bibr" rid="B26">1995</xref>). Definitions for all symbols used in the paper are provided in Table <xref ref-type="table" rid="T1">1</xref>.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p><bold>Symbols and definitions</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Symbol</bold></th>
<th valign="top" align="left"><bold>Definition</bold></th>
<th valign="top" align="left"><bold>Units</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>C</italic></td>
<td valign="top" align="left">Total chlorophyll concentration</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>w</italic></sub></td>
<td valign="top" align="left">Total chlorophyll concentration estimated from the seven diagnostic pigments (Equation 3)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>p</italic></sub></td>
<td valign="top" align="left">Chlorophyll concentration for picophytoplankton (cells &#x0003C; 2&#x003BC;m)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>p,n</italic></sub></td>
<td valign="top" align="left">Chlorophyll concentration for combined nano-picophytoplankton (cells &#x0003C; 20&#x003BC;m)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>n</italic></sub></td>
<td valign="top" align="left">Chlorophyll concentration for nanophytoplankton (cells 2&#x02212;20&#x003BC;m)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>m</italic></sub></td>
<td valign="top" align="left">Chlorophyll concentration for microphytoplankton (cells &#x0003E;20&#x003BC;m)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>diat</italic></sub></td>
<td valign="top" align="left">Chlorophyll concentration for diatoms</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>C</italic><sub><italic>dino</italic></sub></td>
<td valign="top" align="left">Chlorophyll concentration for dinoflagellates</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="M3"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">Asymptotic maximum value of <italic>C</italic><sub><italic>p,n</italic></sub> (cells &#x0003C; 20 &#x003BC;m)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="M4"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">Asymptotic maximum value of <italic>C</italic><sub><italic>p</italic></sub> (cells &#x0003C; 2 &#x003BC;m)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="M5"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">Chlorophyll concentration for group <italic>i</italic> (where <italic>i</italic> &#x0003D; <italic>p,n, m, diat</italic> and <italic>dino</italic>) estimated using the SST dependent paramaterizations (Equations 10&#x02013;16)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>D</italic><sub><italic>p,n</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll in combined nano-picophytoplankton (cells &#x0003C; 20&#x003BC;m) as total chlorophyll tends to zero</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>D</italic><sub><italic>p</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll in picophytoplankton (cells &#x0003C; 2&#x003BC;m) as total chlorophyll tends to zero</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>F</italic><sub><italic>p</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll for picophytoplankton (cells &#x0003C; 2&#x003BC;m)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>F</italic><sub><italic>p,n</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll for combined nano-picophytoplankton (cells &#x0003C; 20&#x003BC;m)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>F</italic><sub><italic>n</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll for nanophytoplankton (cells 2&#x02212;20&#x003BC;m)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>F</italic><sub><italic>m</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll for microphytoplankton (cells &#x0003E;20&#x003BC;m)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>F</italic><sub><italic>diat</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll for diatoms</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>F</italic><sub><italic>dino</italic></sub></td>
<td valign="top" align="left">Fraction of total chlorophyll for dinoflagellates</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>G</italic><sub>1</sub></td>
<td valign="top" align="left">Parameter of Equation (12) controlling lower and/or upper bound in <inline-formula><mml:math id="M6"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>G</italic><sub>2</sub></td>
<td valign="top" align="left">Parameter of Equation (12) controlling slope of change in <inline-formula><mml:math id="M7"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> with SST</td>
<td valign="top" align="left">&#x000B0;C<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>G</italic><sub>3</sub></td>
<td valign="top" align="left">Parameter of Equation (12) controlling the SST mid-point of <italic>G</italic><sub>2</sub></td>
<td valign="top" align="left">&#x000B0;C</td>
</tr>
<tr>
<td valign="top" align="left"><italic>G</italic><sub>4</sub></td>
<td valign="top" align="left">Parameter of Equation (12) controlling lower and/or upper bound in <inline-formula><mml:math id="M8"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>H</italic><sub>1</sub></td>
<td valign="top" align="left">Parameter of Equation (13) controlling lower and/or upper bound in <inline-formula><mml:math id="M9"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>H</italic><sub>2</sub></td>
<td valign="top" align="left">Parameter of Equation (13) controlling slope of change in <inline-formula><mml:math id="M10"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> with SST</td>
<td valign="top" align="left">&#x000B0;C<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>H</italic><sub>3</sub></td>
<td valign="top" align="left">Parameter of Equation (13) controlling the SST mid-point of <italic>H</italic><sub>2</sub></td>
<td valign="top" align="left">&#x000B0;C</td>
</tr>
<tr>
<td valign="top" align="left"><italic>H</italic><sub>4</sub></td>
<td valign="top" align="left">Parameter of Equation (13) controlling lower and/or upper bound in <inline-formula><mml:math id="M11"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>J</italic><sub>1</sub></td>
<td valign="top" align="left">Parameter of Equation (14) controlling lower and/or upper bound in <italic>D</italic><sub><italic>p,n</italic></sub></td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>J</italic><sub>2</sub></td>
<td valign="top" align="left">Parameter of Equation (14) controlling slope of change in <italic>D</italic><sub><italic>p,n</italic></sub> with SST</td>
<td valign="top" align="left">&#x000B0;C<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>J</italic><sub>3</sub></td>
<td valign="top" align="left">Parameter of Equation (14) controlling the SST mid-point of <italic>J</italic><sub>2</sub></td>
<td valign="top" align="left">&#x000B0;C</td>
</tr>
<tr>
<td valign="top" align="left"><italic>J</italic><sub>4</sub></td>
<td valign="top" align="left">Parameter of Equation (14) controlling lower and/or upper bound in <italic>D</italic><sub><italic>p,n</italic></sub></td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>1</sub></td>
<td valign="top" align="left">Parameter of Equation (15) controlling lower and/or upper bound in <italic>D</italic><sub><italic>p</italic></sub></td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>2</sub></td>
<td valign="top" align="left">Parameter of Equation (15) controlling slope of change in <italic>D</italic><sub><italic>p</italic></sub> with SST</td>
<td valign="top" align="left">&#x000B0;C<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>3</sub></td>
<td valign="top" align="left">Parameter of Equation (15) controlling the SST mid-point of <italic>K</italic><sub>2</sub></td>
<td valign="top" align="left">&#x000B0;C</td>
</tr>
<tr>
<td valign="top" align="left"><italic>K</italic><sub>4</sub></td>
<td valign="top" align="left">Parameter of Equation (15) controlling lower and/or upper bound in <italic>D</italic><sub><italic>p</italic></sub></td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>P</italic><sub><italic>i</italic></sub></td>
<td valign="top" align="left">Diagnostic pigments (where <italic>i</italic> &#x0003D; 1 to 7) for: fucoxanthin (1), peridinin (2), 19&#x02032;-hexanoyloxyfucoxanthin (3), 19&#x02032;-butanoyloxyfucoxanthin (4), alloxanthin (5), total chlorophyll-b (6), and zeaxanthin (7)</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>P</italic><sub>1, <italic>n</italic></sub></td>
<td valign="top" align="left">Diagnostic pigment fucoxanthin in nanophytoplankton</td>
<td valign="top" align="left">mg m<sup>&#x02212;3</sup></td>
</tr>
<tr>
<td valign="top" align="left"><italic>q</italic><sub>1 &#x02192; 2</sub></td>
<td valign="top" align="left">Empirical coefficients used to compute <italic>P</italic><sub>1, <italic>n</italic></sub> from <italic>P</italic><sub>3</sub> and <italic>P</italic><sub>4</sub> (Equation 5)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>r</italic></td>
<td valign="top" align="left">Pearson correlation coefficient</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left">SST</td>
<td valign="top" align="left">Sea surface temperature</td>
<td valign="top" align="left">&#x000B0;C</td>
</tr>
<tr>
<td valign="top" align="left"><italic>T</italic><sub><italic>i</italic></sub></td>
<td valign="top" align="left">Membership for each Optical Water Type (OWT)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left"><italic>W</italic><sub><italic>i</italic></sub></td>
<td valign="top" align="left">Weights in Equation (3) (where <italic>i</italic> &#x0003D; 1 to 7) for: fucoxanthin (1), peridinin (2), 19&#x02032;-hexanoyloxyfucoxanthin (3), 19&#x02032;-butanoyloxyfucoxanthin (4), alloxanthin (5), total chlorophyll-b (6), and zeaxanthin (7)</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left">&#x003B1;</td>
<td valign="top" align="left">Parameter of Equation (16) controlling slope of change in <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> with SST</td>
<td valign="top" align="left">&#x000B0;C<sup>&#x02212;1</sup></td>
</tr>
<tr>
<td valign="top" align="left">&#x003B2;</td>
<td valign="top" align="left">Parameter of Equation (16) controlling the SST mid-point of &#x003B1;</td>
<td valign="top" align="left">&#x000B0;C</td>
</tr>
<tr>
<td valign="top" align="left">&#x003B4;</td>
<td valign="top" align="left">Bias between log<sub>10</sub>-transformed concentrations from estimated and measured data</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left">&#x00394;</td>
<td valign="top" align="left">Unbiased root mean square error between log<sub>10</sub>-transformed concentrations from estimated and measured data</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
<tr>
<td valign="top" align="left">&#x003A8;</td>
<td valign="top" align="left">Root mean square error between log<sub>10</sub>-transformed concentrations from estimated and measured data</td>
<td valign="top" align="left">Dimensionless</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec>
<title>2.3. Data</title>
<sec>
<title>2.3.1. High performance liquid chromatography (HPLC) pigment data</title>
<p>A total of 2,791 samples collected in the North Atlantic region and analyzed by High Performance Liquid Chromatography (HPLC) were used in this study (Figure <xref ref-type="fig" rid="F1">1</xref>), spanning 1995&#x02013;2014. This dataset comprised of samples from: the Atlantic Meridional Transect (AMT) cruises 1-23 (Gibb et al., <xref ref-type="bibr" rid="B46">2000</xref>; Barlow et al., <xref ref-type="bibr" rid="B6">2002</xref>; Aiken et al., <xref ref-type="bibr" rid="B1">2009</xref>; Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>; Airs and Martinez-Vicente, <xref ref-type="bibr" rid="B2">2014a</xref>,<xref ref-type="bibr" rid="B3">b</xref>,<xref ref-type="bibr" rid="B4">c</xref>; Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>); the GeP&#x00026;CO program (Dandonneau et al., <xref ref-type="bibr" rid="B34">2004</xref>); the North Atlantic bloom experiment (Werdell et al., <xref ref-type="bibr" rid="B124">2003</xref>; Westberry et al., <xref ref-type="bibr" rid="B127">2010</xref>); the eastern Atlantic Ocean (Brotas et al., <xref ref-type="bibr" rid="B24">2013</xref>); the North Atlantic, collected by the Bedford Institute of Oceanography (Sathyendranath et al., <xref ref-type="bibr" rid="B102">2001</xref>; Devred et al., <xref ref-type="bibr" rid="B38">2006</xref>); the Western Channel Observatory in the English Channel (Station L4 and E1; Smyth et al., <xref ref-type="bibr" rid="B108">2010</xref>); a series of UK NERC-funded research cruises (D261, D262, D264, D325, JC011, JC037, and JCR656) in the North Atlantic and North Sea (Tilstone et al., <xref ref-type="bibr" rid="B115">2015</xref>); and from the NASA bio-Optical Marine Algorithm Dataset (NOMAD Version 2.0 ALPHA, Werdell and Bailey, <xref ref-type="bibr" rid="B123">2005</xref>), following the removal of any AMT data so as to avoid duplication. Details of HPLC methods used can be found in the aforementioned references.</p>
<p>Only samples collected within the top 20 m of the water column (or within the 1st optical depth as in the case of the NASA NOMAD dataset) were used [i.e., within the surface mixed-layer depth (rarely &#x0003C; 20 m; de Boyer Mont&#x000E9;gut et al., <xref ref-type="bibr" rid="B35">2004</xref>)]. To control the quality of the pigment data, we used only HPLC data for which the total chlorophyll concentration was greater than 0.001 mg m<sup>&#x02212;3</sup> (Uitz et al., <xref ref-type="bibr" rid="B117">2006</xref>), and the difference between the total chlorophyll concentration and the total accessory pigments was less than 30% of the total pigment concentration (Trees et al., <xref ref-type="bibr" rid="B116">2000</xref>; Aiken et al., <xref ref-type="bibr" rid="B1">2009</xref>; Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>).</p>
<sec>
<title>2.3.1.1. Size-fractionated chlorophyll estimates from HPLC</title>
<p>The fractions of total chlorophyll for the three phytoplankton size classes (<italic>F</italic><sub><italic>p</italic></sub>, <italic>F</italic><sub><italic>n</italic></sub>, and <italic>F</italic><sub><italic>m</italic></sub>, for pico-, nano-, and microplankton, respectively) were estimated following the methods of Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>), adapted from Vidussi et al. (<xref ref-type="bibr" rid="B118">2001</xref>), Uitz et al. (<xref ref-type="bibr" rid="B117">2006</xref>), Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>), and Devred et al. (<xref ref-type="bibr" rid="B39">2011</xref>). Note, whenever we refer to microplankton, nanoplankton and picoplankton, we are referring to phytoplankton. First, the total chlorophyll concentration (<italic>C</italic>) was estimated from the weighted sum of the seven diagnostic pigments, hereafter denoted <italic>C</italic><sub><italic>w</italic></sub>, according to</p>
<disp-formula id="E3"><label>(3)</label><mml:math id="M12"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle='true'><mml:munderover><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mn>7</mml:mn></mml:munderover><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where, the weights are denoted [<bold>W</bold>], and the diagnostic pigments [<bold>P</bold>] = {fucoxanthin; peridinin; 19&#x02032;-hexanoyloxyfucoxanthin; 19&#x02032;-butanoyloxyfucoxanthin; alloxanthin; total chlorophyll-b; zeaxanthin}. We computed the weights [<bold>W</bold>] using multi-linear regression on the 2,791 samples. Retrieved values for the weights compare reasonably to values derived globally (Table <xref ref-type="table" rid="T2">2</xref>), and total chlorophyll (<italic>C</italic>) and total chlorophyll estimated from Equation (3) (<italic>C</italic><sub><italic>w</italic></sub>) were in good agreement (<italic>r</italic> = 0.99, &#x003A8; = 0.10). Having derived <italic>C</italic><sub><italic>w</italic></sub>, the fractions of chlorophyll in each size class relative to the total chlorophyll concentration were estimated.</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p><bold>Key taxonomic groups of phytoplankton, their typical size class, their category in the ERSEM model and their diagnostic pigment</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Key taxonomic groups</bold></th>
<th valign="top" align="left"><bold>Typical size class<xref ref-type="table-fn" rid="TN2"><sup>&#x00026;</sup></xref></bold></th>
<th valign="top" align="left"><bold>ERSEM Group<xref ref-type="table-fn" rid="TN4"><sup>&#x00023;</sup></xref></bold></th>
<th valign="top" align="left"><bold>Pigment</bold></th>
<th valign="top" align="center" colspan="3">[<bold>W</bold>]</th>
</tr>
<tr>
<th/>
<th/>
<th/>
<th/>
<th valign="top" align="center"><bold>This study (N. Atlantic)<xref ref-type="table-fn" rid="TN3"><sup>$</sup></xref></bold></th>
<th valign="top" align="center"><bold>Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>) (Global)<xref ref-type="table-fn" rid="TN3"><sup>$</sup></xref></bold></th>
<th valign="top" align="center"><bold>Uitz et al. (<xref ref-type="bibr" rid="B117">2006</xref>) (Global)</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Diatoms</td>
<td valign="top" align="left">Micro<xref ref-type="table-fn" rid="TN5"><sup>a</sup></xref></td>
<td valign="top" align="left">Diatoms</td>
<td valign="top" align="left">Fucoxanthin<xref ref-type="table-fn" rid="TN9"><sup>e</sup></xref> (<italic>P</italic><sub>1</sub>)</td>
<td valign="top" align="center">1.65 (&#x000B1;0.01)</td>
<td valign="top" align="center">1.51 (&#x000B1;0.01)</td>
<td valign="top" align="center">1.41</td>
</tr>
<tr>
<td valign="top" align="left">Dinoflagellates</td>
<td valign="top" align="left">Micro</td>
<td valign="top" align="left">Dinoflagellates<xref ref-type="table-fn" rid="TN8"><sup>d</sup></xref></td>
<td valign="top" align="left">Peridinin (<italic>P</italic><sub>2</sub>)</td>
<td valign="top" align="center">1.04 (&#x000B1;0.03)</td>
<td valign="top" align="center">1.35 (&#x000B1;0.02)</td>
<td valign="top" align="center">1.41</td>
</tr>
<tr>
<td valign="top" align="left">Prymnesiophytes</td>
<td valign="top" align="left">Nano<xref ref-type="table-fn" rid="TN6"><sup>b</sup></xref></td>
<td valign="top" align="left">Nano</td>
<td valign="top" align="left">19&#x02032;-hexanoyloxyfucoxanthin<sup>2</sup> (<italic>P</italic><sub>3</sub>)</td>
<td valign="top" align="center">0.78 (&#x000B1;0.01)</td>
<td valign="top" align="center">0.95 (&#x000B1;0.01)</td>
<td valign="top" align="center">1.27</td>
</tr>
<tr>
<td valign="top" align="left">Pelagophytes</td>
<td valign="top" align="left">Nano</td>
<td valign="top" align="left">Nano</td>
<td valign="top" align="left">19&#x02032;-butanoyloxyfucoxanthin (<italic>P</italic><sub>4</sub>)</td>
<td valign="top" align="center">1.19 (&#x000B1;0.03)</td>
<td valign="top" align="center">0.85 (&#x000B1;0.02)</td>
<td valign="top" align="center">0.35</td>
</tr>
<tr>
<td valign="top" align="left">Cryptophytes</td>
<td valign="top" align="left">Nano</td>
<td valign="top" align="left">Nano</td>
<td valign="top" align="left">Alloxanthin (<italic>P</italic><sub>5</sub>)</td>
<td valign="top" align="center">3.14 (&#x000B1;0.04)</td>
<td valign="top" align="center">2.71 (&#x000B1;0.05)</td>
<td valign="top" align="center">0.60</td>
</tr>
<tr>
<td valign="top" align="left">Chlorophytes, Prochlorophytes</td>
<td valign="top" align="left">Pico<xref ref-type="table-fn" rid="TN7"><sup>c</sup></xref></td>
<td valign="top" align="left">Pico</td>
<td valign="top" align="left">Total Chlorophyll-b<xref ref-type="table-fn" rid="TN1"><sup>&#x0002A;</sup></xref> (<italic>P</italic><sub>6</sub>)</td>
<td valign="top" align="center">1.38 (&#x000B1;0.02)</td>
<td valign="top" align="center">1.27 (&#x000B1;0.01)</td>
<td valign="top" align="center">1.01</td>
</tr>
<tr>
<td valign="top" align="left">Cyanobacteria, Prochlorophytes</td>
<td valign="top" align="left">Pico</td>
<td valign="top" align="left">Pico</td>
<td valign="top" align="left">Zeaxanthin (<italic>P</italic><sub>7</sub>)</td>
<td valign="top" align="center">1.02 (&#x000B1;0.01)</td>
<td valign="top" align="center">0.93 (&#x000B1;0.00)</td>
<td valign="top" align="center">0.86</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>The table also shows a comparison of the weights ([<bold>W</bold>]) computed for Equation (3) using the 2791 HPLC data samples collected in this study, with weights derived from two other studies of the global ocean</italic>.</p>
<fn id="TN1">
<label>&#x0002A;</label>
<p><italic>Total Chlorophyll-b refers to the sum of Chlorophyll-b and divinyl chlorophyll-b</italic>.</p></fn>
<fn id="TN2">
<label>&#x00026;</label>
<p><italic>Micro refers to cell cells &#x0003E;20 &#x003BC;m, Nano cells 2&#x02013;20&#x003BC;m and Pico cells &#x0003C;2 &#x003BC;m in size</italic>.</p></fn>
<fn id="TN3">
<label>$</label>
<p><italic>Bracketed values refer to the standards deviations for each coefficient</italic>.</p></fn>
<fn id="TN4">
<label>&#x00023;</label>
<p><italic>Phytoplankton state variables in ERSEM model</italic>.</p></fn>
<fn id="TN5">
<label>a</label>
<p><italic>Diatoms can be found in the nano size class</italic>.</p></fn>
<fn id="TN6">
<label>b</label>
<p><italic>Prymnesiophytes and 19&#x02032;-hexanoyloxyfucoxanthin pigment can be found in the pico size class</italic>.</p></fn>
<fn id="TN7">
<label>c</label>
<p><italic>Some chlorophytes can be found in the nanoplankton size class (Latasa et al., <xref ref-type="bibr" rid="B61">2004</xref>)</italic>.</p></fn>
<fn id="TN8">
<label>d</label>
<p><italic>Also named microplankton in ERSEM</italic>.</p></fn>
<fn id="TN9">
<label>e</label>
<p><italic>Fucoxanthin can be found in the nano size class</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Following Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>), the fraction of picoplankton chlorophyll concentration (<italic>F</italic><sub><italic>p</italic></sub>) was computed according to</p>
<disp-formula id="E4"><label>(4)</label><mml:math id="M13"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi>p</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mrow><mml:mo>{</mml:mo><mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mn>12.5</mml:mn><mml:mi>C</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn><mml:mo stretchy='false'>)</mml:mo><mml:msub><mml:mi>W</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mn>3</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:mfrac><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>6</mml:mn></mml:mrow><mml:mn>7</mml:mn></mml:msubsup><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>if&#x000A0;</mml:mtext><mml:mi>C</mml:mi><mml:mo>&#x02264;</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:mn>08</mml:mn><mml:mtext>&#x000A0;mg</mml:mtext><mml:msup><mml:mtext>m</mml:mtext><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>6</mml:mn></mml:mrow><mml:mn>7</mml:mn></mml:msubsup><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>if&#x000A0;</mml:mtext><mml:mi>C</mml:mi><mml:mo>&#x0003E;</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:mn>08</mml:mn><mml:mtext>&#x000A0;mg</mml:mtext><mml:msup><mml:mtext>m</mml:mtext><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>The fraction of nanoplankton chlorophyll concentration (<italic>F</italic><sub><italic>n</italic></sub>) was estimated by first apportioning part of the fucoxanthin pigment (<italic>P</italic><sub>1</sub>) to the nanoplankton pool, as conducted by Devred et al. (<xref ref-type="bibr" rid="B39">2011</xref>), such that</p>
<disp-formula id="E5"><label>(5)</label><mml:math id="M14"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mrow><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mn>10</mml:mn></mml:mrow><mml:mrow><mml:mo>&#x0007B;</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mrow><mml:mi>log</mml:mi></mml:mrow><mml:mrow><mml:mn>10</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>P</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mi>q</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:msub><mml:mrow><mml:mi>log</mml:mi></mml:mrow><mml:mrow><mml:mn>10</mml:mn></mml:mrow></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:msub><mml:mi>P</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo>&#x0007D;</mml:mo></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where <italic>P</italic><sub>3</sub> and <italic>P</italic><sub>4</sub> refer to 19&#x02032;-hexanoyloxyfucoxanthin and 19&#x02032;-butanoyloxyfucoxanthin. This is to account for the fact that fucoxanthin is a precursor to 19&#x02032;-hexanoyloxyfucoxanthin and 19&#x02032;-butanoyloxyfucoxanthin (Devred et al., <xref ref-type="bibr" rid="B39">2011</xref>). We recomputed these coefficients (<italic>q</italic><sub>1</sub> and <italic>q</italic><sub>2</sub>) using the 2,791 HPLC samples, and arrived at values of <italic>q</italic><sub>1</sub> &#x0003D; 0.14 and <italic>q</italic><sub>2</sub> &#x0003D; 1.35. For any sample where <italic>P</italic><sub>1,<italic>n</italic></sub> was higher than <italic>P</italic><sub>1</sub>, then <italic>P</italic><sub>1,<italic>n</italic></sub> was set to equal <italic>P</italic><sub>1</sub>. Following Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>), the fraction of nanoplankton chlorophyll concentration (<italic>F</italic><sub><italic>n</italic></sub>) was then estimated according to</p>
<disp-formula id="E6"><label>(6)</label><mml:math id="M15"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mrow><mml:mo>{</mml:mo><mml:mrow><mml:mtable columnalign='left'><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:mn>12.5</mml:mn><mml:mi>C</mml:mi><mml:msub><mml:mi>W</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mn>3</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:mfrac><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>4</mml:mn></mml:mrow><mml:mn>5</mml:mn></mml:msubsup><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>W</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mrow><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>if&#x000A0;</mml:mtext><mml:mi>C</mml:mi><mml:mo>&#x02264;</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:msup><mml:mrow><mml:mn>08</mml:mn><mml:mtext>mg&#x000A0;m</mml:mtext></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr columnalign='left'><mml:mtd columnalign='left'><mml:mrow><mml:mfrac><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>3</mml:mn></mml:mrow><mml:mn>5</mml:mn></mml:msubsup><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mtext>&#x000A0;</mml:mtext><mml:mo>+</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:msub><mml:mi>W</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mrow><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mrow></mml:mtd><mml:mtd columnalign='left'><mml:mrow><mml:mtext>if&#x000A0;</mml:mtext><mml:mi>C</mml:mi><mml:mo>&#x0003E;</mml:mo><mml:mn>0.</mml:mn><mml:msup><mml:mrow><mml:mn>08</mml:mn><mml:mtext>&#x000A0;mg&#x000A0;m</mml:mtext></mml:mrow><mml:mrow><mml:mo>&#x02212;</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:mrow></mml:math></disp-formula>
<p>Finally, following Devred et al. (<xref ref-type="bibr" rid="B39">2011</xref>) and Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>), the fraction of microplankton chlorophyll concentration (<italic>F</italic><sub><italic>m</italic></sub>) was estimated as</p>
<disp-formula id="E7"><label>(7)</label><mml:math id="M16"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mn>2</mml:mn></mml:msubsup><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>W</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mrow><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
<p>Note that <italic>F</italic><sub><italic>m</italic></sub> can also be computed by simply subtracting <italic>F</italic><sub><italic>n</italic></sub> and <italic>F</italic><sub><italic>p</italic></sub> from one. The fractions of chlorophyll in each size class were then multiplied by the corresponding HPLC-derived total chlorophyll concentration (<italic>C</italic>) to derive the size-specific chlorophyll concentrations for each sample (<italic>C</italic><sub><italic>p</italic></sub>, <italic>C</italic><sub><italic>p,n</italic></sub>, <italic>C</italic><sub><italic>n</italic></sub>, and <italic>C</italic><sub><italic>p</italic></sub>, where the subscripts &#x0201C;<italic>p</italic>&#x0201D; refers to pico-, &#x0201C;<italic>n</italic>&#x0201D; nano- and &#x0201C;<italic>m</italic>&#x0201D; microphytoplankton, and the subscript &#x0201C;<italic>p,n</italic>&#x0201D; refers to combined pico and nanophytoplankton).</p>
</sec>
<sec>
<title>2.3.1.2. Partitioning the fraction of microphytoplankton chlorophyll into fractions of diatoms and dinoflagellates</title>
<p>The fraction of microphytoplankton chlorophyll concentration (<italic>F</italic><sub><italic>m</italic></sub>) is estimated from two diagnostic pigments, fucoxanthin in microphytoplankton (<italic>P</italic><sub>1, <italic>m</italic></sub>) and peridinin (<italic>P</italic><sub>2</sub>). It is generally assumed that fucoxanthin in microphytoplankton is the primary pigment for diatoms (Stauber and Jeffrey, <xref ref-type="bibr" rid="B109">1988</xref>) and peridinin for dinoflagellates, as the majority of photosynthetic dinoflagellates contain a chloroplast with peridinin as the major carotenoid (see Table 1 and Zapata et al., <xref ref-type="bibr" rid="B130">2012</xref>). Following Hirata et al. (<xref ref-type="bibr" rid="B51">2011</xref>), this assumption was used to partition microphytoplankton chlorophyll into the concentrations of the two groups.</p>
<p>The fraction of microplankton diatoms to total chlorophyll (<italic>F</italic><sub><italic>diat</italic></sub>) and the fraction of microplankton dinoflagellates to total chlorophyll (<italic>F</italic><sub><italic>dino</italic></sub>) were computed as</p>
<disp-formula id="E8"><label>(8)</label><mml:math id="M17"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi>d</mml:mi><mml:mi>i</mml:mi><mml:mi>a</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>W</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mrow><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>and</p>
<disp-formula id="E9"><label>(9)</label><mml:math id="M18"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi>d</mml:mi><mml:mi>i</mml:mi><mml:mi>n</mml:mi><mml:mi>o</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:msub><mml:mi>P</mml:mi><mml:mn>2</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>respectively. The chlorophyll concentrations for diatoms and dinoflagellates (<italic>C</italic><sub><italic>diat</italic></sub> and <italic>C</italic><sub><italic>dino</italic></sub>) were then obtained by multiplying the fractions by the corresponding HPLC-derived total chlorophyll concentration (<italic>C</italic>).</p>
</sec>
</sec>
<sec>
<title>2.3.2. Size-fractionated filtration (SFF) data</title>
<p>A total of 263 size-fractionated fluorometric chlorophyll (SFF) measurements collected previously in the North Atlantic region were also used in this study (Figure <xref ref-type="fig" rid="F1">1</xref>), spanning 1996&#x02013;2015. This comprised of samples from: the Atlantic Meridional Transect cruises 2&#x02013;23 (see Mara&#x000F1;&#x000F3;n et al., <xref ref-type="bibr" rid="B72">2001</xref>; Serret et al., <xref ref-type="bibr" rid="B104">2001</xref>; Robinson et al., <xref ref-type="bibr" rid="B97">2002</xref>; Brewin et al., <xref ref-type="bibr" rid="B18">2014a</xref>,<xref ref-type="bibr" rid="B19">b</xref>; Tilstone et al., <xref ref-type="bibr" rid="B113">2017</xref>, for details); the Western Channel Observatory in the English Channel (Station L4 and E1; see Barnes et al., <xref ref-type="bibr" rid="B7">2014</xref>, for details); and the NERC shelf seas biogeochemistry programme.</p>
<p>In all cases, &#x0007E;200&#x02013;300 ml samples were sequentially filtered through 20, 2, and 0.2 &#x003BC;m polycarbonate filters. Following filtration, pigments were extracted by storing the filters in 90% acetone at &#x02212;20&#x000B0;C for between 10 and 24 h. Samples were then analyzed using a Turner Design Fluorometer, pre- and post-calibrated using pure chlorophyll-a in 90% acetone as a standard. The total chlorophyll concentration was taken as the sum of the size fractions for each sample. The concentration of chlorophyll passing through the 2 &#x003BC;m filter was designated <italic>C</italic><sub><italic>p</italic></sub> (picoplankton chlorophyll), chlorophyll retained on the 20 &#x003BC;m filter designated <italic>C</italic><sub><italic>m</italic></sub> (microplankton chlorophyll) and the chlorophyll retained on the 2 &#x003BC;m filter, having passed through the 20 &#x003BC;m filter, designated <italic>C</italic><sub><italic>n</italic></sub> (nanoplankton chlorophyll).</p>
</sec>
</sec>
<sec>
<title>2.4. Merging of <italic>in situ</italic> datasets</title>
<p>Systematic biases in size-fractionated chlorophyll estimated from HPLC pigments and from SFF have been observed in the Atlantic Ocean (Brewin et al., <xref ref-type="bibr" rid="B18">2014a</xref>), with implications for models that estimate size-fractionated chlorophyll as a function of total chlorophyll (Brewin et al., <xref ref-type="bibr" rid="B19">2014b</xref>) and models that estimate size-fractionated primary production (Brewin et al., <xref ref-type="bibr" rid="B20">2017</xref>). Therefore, care needs to be taken when combining these two datasets. Figure <xref ref-type="fig" rid="F2">2</xref> shows a comparison of 31 concurrent and co-located data points of total chlorophyll (Figure <xref ref-type="fig" rid="F2">2A</xref>), picoplankton chlorophyll (Figure <xref ref-type="fig" rid="F2">2B</xref>), nanoplankton chlorophyll (Figure <xref ref-type="fig" rid="F2">2C</xref>) and microplankton chlorophyll (Figure <xref ref-type="fig" rid="F2">2D</xref>), from the HPLC and SFF dataset used here.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>Concurrent and co-located size-fractionated chlorophyll estimated from High Performance Liquid Chromatography (HPLC) and size-fractionated filtration (SFF) for surface waters in the North Atlantic region. (A)</bold> shows a comparison of total chlorophyll (<italic>C</italic>), <bold>(B)</bold> picoplankton chlorophyll (<italic>C</italic><sub><italic>p</italic></sub>), <bold>(C)</bold> nanoplankton chlorophyll (<italic>C</italic><sub><italic>n</italic></sub>), and <bold>(D)</bold> microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>). Black line represents the 1:1 line and dotted lines represent the 1:1 line &#x000B1;30% log<sub>10</sub> chlorophyll. <italic>N</italic> refers to the number of samples used to compute statistics, <italic>r</italic> refers to the Pearson linear correlation coefficient, &#x003A8; the root mean square error (Equation 1) and &#x003B4; the bias (Equation 2).</p></caption>
<graphic xlink:href="fmars-04-00104-g0002.tif"/>
</fig>
<p>Despite there being biases in size-fractionated chlorophyll consistent with those observed by Brewin et al. (<xref ref-type="bibr" rid="B18">2014a</xref>) (Figure <xref ref-type="fig" rid="F2">2</xref>), these biases are notably smaller (e.g., for picoplankton chlorophyll &#x003B4; &#x0003D; &#x02212;0.07 compared with &#x003B4; &#x0003D; &#x02212;0.27 in see their Figure 3 Brewin et al. (<xref ref-type="bibr" rid="B18">2014a</xref>), and for nanoplankton &#x003B4; &#x0003D; 0.15 compared with &#x003B4; &#x0003D; 0.22), suggesting for surface waters in the North Atlantic, there is reasonable agreement between the two methods, at least for the datasets used here. Given the good agreement in Figure <xref ref-type="fig" rid="F2">2</xref>, the two datasets were combined into a single dataset, providing 3,054 measurements of size-fractionated chlorophyll (2,791 HPLC and 263 SFF). Figure <xref ref-type="fig" rid="F3">3</xref> shows a schematic diagram of how the datasets were combined and subsequently used for model parameterization and validation.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p><bold>A flow chart of the processing techniques</bold>. Data collected in the OCTAC ATL region [both High Performance Liquid Chromatography (HPLC) and size-fractionated filtration (SFF)] were partitioned into two databases [parameterization (Database A) and satellite validation (Database B)], and used to re-tune, adapt and validate the model of Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>), compute the root mean square error (&#x003A8;) and bias (&#x003B4;) for each optical water type (OWT), and map phytoplankton group products and associated errors using ocean-color data.</p></caption>
<graphic xlink:href="fmars-04-00104-g0003.tif"/>
</fig>
<p>For each sample, SST data were extracted by matching each <italic>in situ</italic> sample in time (daily temporal match-up) and space (closest latitude and longitude) with daily, 1/4&#x000B0; resolution Optimal Interpolation Sea Surface Temperature (OISST) data (Version 2.0; Reynolds et al., <xref ref-type="bibr" rid="B95">2007</xref>) acquired from the NOAA website (<ext-link ext-link-type="uri" xlink:href="http://www.esrl.noaa.gov/psd/data/gridded/data.noaa.oisst.v2.highres.html">http://www.esrl.noaa.gov/psd/data/gridded/data.noaa.oisst.v2.highres.html</ext-link>).</p>
</sec>
<sec>
<title>2.5. Partitioning into parameterization and validation datasets</title>
<p>The merged dataset was matched to daily, level 3 (4 km sinusoidal projected) satellite chlorophyll and optical water type (OWT) data, from version 3.0 of the Ocean Colour Climate Change Initiative (OC-CCI, a merged MERIS, MODIS-Aqua, SeaWiFS and VIIRS product available at <ext-link ext-link-type="uri" xlink:href="http://www.oceancolour.org/">http://www.oceancolour.org/</ext-link>), between 1997 and 2015. Each <italic>in situ</italic> sample was matched with a single satellite pixel in time (daily match-up) and space (closest pixel with a distance &#x0003C; 4 km away). Of the 3,054 samples, there were 815 corresponding satellite chlorophyll and optical water type (OWT) data. These 815 measurements were set aside and used for independent validation of the satellite model and for characterizing per-pixel error, leaving 2,239 measurements that were used for model development (parameterization). Figure <xref ref-type="fig" rid="F3">3</xref> shows a schematic diagram of how the data were partitioned into the parameterization and validation dataset.</p>
<p>The OWT data provided in version 3.0 of the OC-CCI dataset contains the per-pixel membership of 14 different optical classes, ranging from oligotrophic (e.g., OWT 1) to very turbid (OWT 14) waters. Building on the work of Moore et al. (<xref ref-type="bibr" rid="B78">2001</xref>, <xref ref-type="bibr" rid="B79">2009</xref>, <xref ref-type="bibr" rid="B80">2012</xref>), this new set of optical classes were constructed for use with OC-CCI remote sensing reflectance (<italic>R</italic><sub><italic>rs</italic></sub>) spectra (Jackson and Sathyendranath, <xref ref-type="bibr" rid="B56">2015</xref>). These classes were trained using <italic>R</italic><sub><italic>rs</italic></sub> spectra from satellite data, rather than using a database of <italic>in situ</italic> observations, as conducted in Moore et al. (<xref ref-type="bibr" rid="B79">2009</xref>), and the number of optical water classes were increased to 14, to better cover the range of <italic>R</italic><sub><italic>rs</italic></sub> spectra observed in the global oceans, particularly the oligotrophic gyres. For further details of the training and production of the 14 OWT the reader is referred to Jackson and Sathyendranath (<xref ref-type="bibr" rid="B56">2015</xref>).</p>
</sec>
<sec>
<title>2.6. Satellite model of phytoplankton groups</title>
<sec>
<title>2.6.1. Three-component model of Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>)</title>
<p>As a starting point, we used the three-component model of Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>) to estimate the chlorophyll concentrations in three phytoplankton size classes [pico- (&#x0003C; 2 &#x003BC;m), nano- (2&#x02013;20 &#x003BC;m), and micro-phytoplankton (&#x0003E;20 &#x003BC;m)] as a function of total chlorophyll in the study region (Figure <xref ref-type="fig" rid="F1">1</xref>). This approach has been successfully tuned to the global ocean (Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>; Ward, <xref ref-type="bibr" rid="B121">2015</xref>) as well as different oceanic regions, including: the Atlantic Ocean (North and South; Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>, <xref ref-type="bibr" rid="B19">2014b</xref>; Tilstone et al., <xref ref-type="bibr" rid="B114">2014</xref>); the North East Atlantic (Brotas et al., <xref ref-type="bibr" rid="B24">2013</xref>); the Indian Ocean (Brewin et al., <xref ref-type="bibr" rid="B15">2012b</xref>); the Western Iberian coastline (Brito et al., <xref ref-type="bibr" rid="B23">2015</xref>); the Mediterranean Sea (Sammartino et al., <xref ref-type="bibr" rid="B100">2015</xref>); and the South China Sea (Lin et al., <xref ref-type="bibr" rid="B67">2014</xref>). Estimating size-fractionated chlorophyll from satellite data (using satellite total chlorophyll as input to the three-component model) has been tested extensively with <italic>in situ</italic> data in different oceanic regions (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>, <xref ref-type="bibr" rid="B15">2012b</xref>; Lin et al., <xref ref-type="bibr" rid="B67">2014</xref>; Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>).</p>
<p>The three-component model is based on two exponential functions (Sathyendranath et al., <xref ref-type="bibr" rid="B102">2001</xref>), where the chlorophyll concentration of picoplankton (<italic>C</italic><sub><italic>p</italic></sub>, cells &#x0003C; 2 &#x003BC;m) and combined pico- and nanoplankton (<italic>C</italic><sub><italic>p,n</italic></sub>, cells &#x0003C; 20 &#x003BC;m) are obtained from</p>
<disp-formula id="E10"><label>(10)</label><mml:math id="M19"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mi>C</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mi>m</mml:mi></mml:msubsup><mml:mo stretchy='false'>[</mml:mo><mml:mn>1</mml:mn><mml:mo>&#x02212;</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mi>m</mml:mi></mml:msubsup></mml:mrow></mml:mfrac><mml:mi>C</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>and</p>
<disp-formula id="E11"><label>(11)</label><mml:math id="M20"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>p</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mi>C</mml:mi><mml:mi>p</mml:mi><mml:mi>m</mml:mi></mml:msubsup><mml:mo stretchy='false'>[</mml:mo><mml:mn>1</mml:mn><mml:mo>&#x02212;</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi>p</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mi>p</mml:mi><mml:mi>m</mml:mi></mml:msubsup></mml:mrow></mml:mfrac><mml:mi>C</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
<p>The parameters <italic>D</italic><sub><italic>p,n</italic></sub> and <italic>D</italic><sub><italic>p</italic></sub> determine the fraction of total chlorophyll in the two size classes (&#x0003C; 20 &#x003BC;m and &#x0003C; 2 &#x003BC;m, respectively) as total chlorophyll tends to zero, and <inline-formula><mml:math id="M21"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="M22"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> are the asymptotic maximum values for the two size classes (&#x0003C; 20 &#x003BC;m and &#x0003C; 2 &#x003BC;m respectively). The chlorophyll concentration of nano-phytoplankton (<italic>C</italic><sub><italic>n</italic></sub>) and micro-phytoplankton (<italic>C</italic><sub><italic>m</italic></sub>) are simply calculated as <italic>C</italic><sub><italic>n</italic></sub> &#x0003D; <italic>C</italic><sub><italic>p,n</italic></sub> &#x02212; <italic>C</italic><sub><italic>p</italic></sub> and <italic>C</italic><sub><italic>m</italic></sub> &#x0003D; <italic>C</italic> &#x02212; <italic>C</italic><sub><italic>p,n</italic></sub>.</p>
<p>A single set of model parameters was first derived by fitting (Equations 10 and 11) using a standard, nonlinear least-squared fitting procedure (Levenberg-Marquardt, IDL Routine MPFITFUN, Mor&#x000E9;, <xref ref-type="bibr" rid="B81">1978</xref>; Markwardt, <xref ref-type="bibr" rid="B75">2008</xref>) with relative weighting (Brewin et al., <xref ref-type="bibr" rid="B13">2011a</xref>). The parameters <italic>D</italic><sub><italic>p,n</italic></sub> and <italic>D</italic><sub><italic>p</italic></sub> were constrained to be less than or equal to one, since size-fractionated chlorophyll cannot exceed total chlorophyll. We used the method of bootstrapping (Efron, <xref ref-type="bibr" rid="B41">1979</xref>; Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>) to compute a parameter distribution, and from the resulting parameter distribution, median values and 95% confidence intervals were computed (see Table <xref ref-type="table" rid="T3">3</xref>). The parameters <italic>D</italic><sub><italic>p,n</italic></sub> and <italic>D</italic><sub><italic>p</italic></sub> were found to be significantly different from the global parameters derived in Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>) (see Table <xref ref-type="table" rid="T3">3</xref>). The model was found to capture the trends in the fractions (<italic>F</italic><sub><italic>p</italic></sub>, <italic>F</italic><sub><italic>n</italic></sub>, <italic>F</italic><sub><italic>p,n</italic></sub>, and <italic>F</italic><sub><italic>m</italic></sub>) and absolute concentrations (<italic>C</italic><sub><italic>p</italic></sub>, <italic>C</italic><sub><italic>n</italic></sub>, <italic>C</italic><sub><italic>p,n</italic></sub>, and <italic>C</italic><sub><italic>m</italic></sub>) of the size classes as a function of total chlorophyll for the North Atlantic parameterization dataset (Figure <xref ref-type="fig" rid="F4">4</xref>).</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p><bold>Parameter values for Equations 10 and 11 compared with global parameters derived in Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>)</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Study</bold></th>
<th valign="top" align="center" colspan="4" style="border-bottom: thin solid #000000;"><bold>Parameters for equations 10 and 11</bold></th>
<th valign="top" align="center"><bold>Location</bold></th>
<th valign="top" align="center"><bold><italic>N</italic><xref ref-type="table-fn" rid="TN11"><sup>&#x00023;</sup></xref></bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold><inline-formula><mml:math id="M23"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula><xref ref-type="table-fn" rid="TN13"><sup>&#x0002A;</sup></xref></bold></th>
<th valign="top" align="center"><bold><inline-formula><mml:math id="M24"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula><xref ref-type="table-fn" rid="TN13"><sup>&#x0002A;</sup></xref></bold></th>
<th valign="top" align="center"><bold><italic>D</italic><sub><italic>p,n</italic></sub></bold></th>
<th valign="top" align="center"><bold><italic>D</italic><sub><italic>p</italic></sub></bold></th>
<th/>
<th/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>)<xref ref-type="table-fn" rid="TN10"><sup>$</sup></xref></td>
<td valign="top" align="center">0.77 (0.72&#x02194;0.84)</td>
<td valign="top" align="center">0.13 (0.12&#x02194;0.14)</td>
<td valign="top" align="center">0.94 (0.93&#x02194;0.95)</td>
<td valign="top" align="center">0.80 (0.78&#x02194;0.82)</td>
<td valign="top" align="left">Global</td>
<td valign="top" align="center">5841</td>
</tr>
<tr>
<td valign="top" align="left">This study<xref ref-type="table-fn" rid="TN10"><sup>$</sup></xref></td>
<td valign="top" align="center">0.82 (0.76&#x02194;0.88)</td>
<td valign="top" align="center">0.13 (0.12&#x02194;0.13)</td>
<td valign="top" align="center">0.87 (0.86&#x02194;0.89)</td>
<td valign="top" align="center">0.73 (0.71&#x02194;0.76)</td>
<td valign="top" align="left">N Atlantic</td>
<td valign="top" align="center">2239</td>
</tr>
<tr>
<td valign="top" align="left">This study<xref ref-type="table-fn" rid="TN10"><sup>$</sup></xref> (&#x0003C;15<sup>o</sup>C)</td>
<td valign="top" align="center">1.83 (1.47&#x02194;2.44)</td>
<td valign="top" align="center">0.31 (0.24&#x02194;0.47)</td>
<td valign="top" align="center">0.60 (0.58&#x02194;0.63)</td>
<td valign="top" align="center">0.26 (0.23&#x02194;0.30)</td>
<td valign="top" align="left">N Atlantic</td>
<td valign="top" align="center">1017</td>
</tr>
<tr>
<td valign="top" align="left">This study<xref ref-type="table-fn" rid="TN10"><sup>$</sup></xref> (&#x02265;15<sup>o</sup>C)</td>
<td valign="top" align="center">0.86 (0.79&#x02194;0.96)</td>
<td valign="top" align="center">0.13 (0.12&#x02194;0.14)</td>
<td valign="top" align="center">0.93 (0.91&#x02194;0.94)</td>
<td valign="top" align="center">0.74 (0.72&#x02194;0.77)</td>
<td valign="top" align="left">N Atlantic</td>
<td valign="top" align="center">1222</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TN10">
<label>$</label>
<p><italic>Model parameters are computed as the median of the bootstrap parameter distribution and bracket parameter values refer to the 2.5 and 97.5% confidence intervals on the distribution</italic>.</p></fn>
<fn id="TN11">
<label>&#x00023;</label>
<p><italic>N = Number of samples used for model parameterization</italic></p></fn>
<fn id="TN13">
<label>&#x0002A;</label>
<p><italic>Denotes units in mg m<sup>&#x02212;3</sup></italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p><bold>The absolute chlorophyll concentrations [C<sub><italic><bold>m</bold></italic></sub> (a,b), <italic>C</italic><sub><italic>p,n</italic></sub> <bold>(e,f)</bold>, <italic>C</italic><sub><italic>n</italic></sub> <bold>(i,j)</bold>, and <italic>C</italic><sub><italic>p</italic></sub> <bold>(m,n)]</bold> and fractions [<italic>F</italic><sub><italic>m</italic></sub> <bold>(c,d)</bold>, <italic>F</italic><sub><italic>p,n</italic></sub> <bold>(g,h)</bold>, <italic>F</italic><sub><italic>n</italic></sub> <bold>(k,l)</bold> and <italic>F</italic><sub><italic>p</italic></sub> <bold>(o,p)</bold>] in the parameterization dataset plotted as a function of total chlorophyll concentration (<italic>C</italic>), with the re-tuned (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>) model (parameters from Table <xref ref-type="table" rid="T3">3</xref>), overlain</bold>. The top row <bold>(a,e,i,m)</bold> and middle-bottom row <bold>(c,g,k,o)</bold> show bivariate histogram plots with the shading indicating the number of observations (<italic>N</italic>). The bottom row <bold>(d,h,l,p)</bold> and middle-top row <bold>(b,f,j,n)</bold> show the same bivariate plots but the shading represents the median sea surface temperature (SST) of the data points that lie within the bins.</p></caption>
<graphic xlink:href="fmars-04-00104-g0004.tif"/>
</fig>
</sec>
<sec>
<title>2.6.2. Modification of three-component model using SST</title>
<p>Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>) and Ward (<xref ref-type="bibr" rid="B121">2015</xref>) have investigated the influence of light availability and SST respectively on the parameterization of the three-component model. In the North Atlantic, seasonal variations in SST and the average light in the mixed-layer are highly correlated (Figure <xref ref-type="fig" rid="F1">1</xref>). Therefore, considering: (i) that there is, regionally, a covariation of SST with the average light in the mixed-layer (Figure <xref ref-type="fig" rid="F1">1</xref>); (ii) that three inputs are required to compute the average light in the mixed-layer (photosynthetically-active radiation, diffuse attenuation and mixed-layer depth), one of which is not amenable from remote-sensing (mixed-layer depth); and (iii) that the maturity (operational use) and accuracy of SST retrievals is very high (Merchant et al., <xref ref-type="bibr" rid="B77">2014</xref>), we chose to investigate the influence of SST on model parameters in the study area, similar to the study of Ward (<xref ref-type="bibr" rid="B121">2015</xref>) for a global dataset.</p>
<p>Figure <xref ref-type="fig" rid="F4">4</xref> illustrates the general inverse correlation between SST and total chlorophyll (<italic>r</italic> &#x0003D; &#x02212;0.67 for SST and log<sub>10</sub>(<italic>C</italic>)), highlighting that higher fractions of smaller cells (lower fractions of large cells) are typically associated with higher SST. To investigate if SST has any influence on the parameters of the three-component model, we partitioned the parameterization data into lower temperature waters (&#x0003C; 15&#x000B0;C) and higher temperature waters (&#x02265;15&#x000B0;C), and fitted the model separately to the two datasets of a roughly equal number (&#x0003E;1,000, see Table <xref ref-type="table" rid="T3">3</xref>). We observed significantly different model parameters for high and low temperature waters (see Table <xref ref-type="table" rid="T3">3</xref> and Figure <xref ref-type="fig" rid="F4">4</xref>), suggesting a relationship between SST and model parameters. We then sorted the dataset according to SST, and conducted a running fit of the three-component model (Equations 10 and 11) as a function of SST with a bin size of 600 samples [chosen to ensure each fit had reasonable representation of observations over the entire trophic range (low to high chlorophyll)]. We used the method of bootstrapping (100 iterations) and derived median values and 95% confidence intervals on each parameter distribution (Figure <xref ref-type="fig" rid="F5">5</xref>).</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><bold>The relationship between sea surface temperature (SST) and the parameters of the re-tuned (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>) model for the North Atlantic dataset. (A)</bold> Shows the relationship between <italic>D</italic><sub><italic>p,n</italic></sub> and SST, and <italic>D</italic><sub><italic>p</italic></sub> and SST. <bold>(B)</bold> Shows the relationship between <inline-formula><mml:math id="M25"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> and SST, and <inline-formula><mml:math id="M26"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> and SST. Solid color lines show median values on the bootstrap parameter distribution and lighter shades represent 95% confidence intervals. Black solid and dashed lines represent logistic models fitted between the parameters and SST shown in Equations (12&#x02013;15), with the parameters provided in Table <xref ref-type="table" rid="T4">4</xref>.</p></caption>
<graphic xlink:href="fmars-04-00104-g0005.tif"/>
</fig>
<p>Significant relationships between all model parameters (<inline-formula><mml:math id="M27"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>, <inline-formula><mml:math id="M28"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>, <italic>D</italic><sub><italic>p,n</italic></sub>, and <italic>D</italic><sub><italic>p</italic></sub>) and SST were observed (Figure <xref ref-type="fig" rid="F5">5</xref>). The relationship between SST and model parameters could be represented using a logistic function, such that <inline-formula><mml:math id="M29"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="M30"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> may be expressed as</p>
<disp-formula id="E12"><label>(12)</label><mml:math id="M31"><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mi>m</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>&#x02212;</mml:mo><mml:mo stretchy='false'>&#x0007B;</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>G</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>[</mml:mo><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>G</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mtext>SST</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>G</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>G</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:mo stretchy='false'>&#x0007D;</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>and</p>
<disp-formula id="E13"><label>(13)</label><mml:math id="M32"><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mi>p</mml:mi><mml:mi>m</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>&#x02212;</mml:mo><mml:mo>&#x0007B;</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>[</mml:mo><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>H</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mtext>SST</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>H</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>H</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:mo>&#x0007D;</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where <italic>G</italic><sub>1</sub> and <italic>G</italic><sub>4</sub> control the upper and lower bounds of <inline-formula><mml:math id="M33"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>, <italic>G</italic><sub>2</sub> represents the slope of change in <inline-formula><mml:math id="M34"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> with SST, and <italic>G</italic><sub>3</sub> is the SST mid-point of the slope between <inline-formula><mml:math id="M35"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> and SST. For <inline-formula><mml:math id="M36"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>, <italic>H</italic><sub><italic>i</italic></sub>, where <italic>i</italic> &#x0003D; 1&#x02013;4, is analogous to <italic>G</italic><sub><italic>i</italic></sub> for <inline-formula><mml:math id="M37"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>. The parameter <italic>D</italic><sub><italic>p,n</italic></sub> and <italic>D</italic><sub><italic>p</italic></sub> were expressed as</p>
<disp-formula id="E14"><label>(14)</label><mml:math id="M38"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>[</mml:mo><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>J</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mtext>SST</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>J</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>J</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>and</p>
<disp-formula id="E15"><label>(15)</label><mml:math id="M39"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi>p</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mn>1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>[</mml:mo><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo stretchy='false'>(</mml:mo><mml:mtext>SST</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>K</mml:mi><mml:mn>4</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where <italic>J</italic><sub>1</sub> and <italic>J</italic><sub>4</sub> control the upper and lower bounds of <italic>D</italic><sub><italic>p,n</italic></sub>, <italic>J</italic><sub>2</sub> represents the slope of change in <italic>D</italic><sub><italic>p,n</italic></sub> with SST, and <italic>J</italic><sub>3</sub> is the SST mid-point of the slope between <italic>D</italic><sub><italic>p,n</italic></sub> and SST. For <italic>D</italic><sub><italic>p</italic></sub>, <italic>K</italic><sub><italic>i</italic></sub> is analogous to <italic>J</italic><sub><italic>i</italic></sub> for <italic>D</italic><sub><italic>p,n</italic></sub>. The parameters for Equations (12)&#x02013;(15) were fitted using a nonlinear least-squared fitting procedure (Levenberg-Marquardt) with bootstrapping, and parameter values are provided in Table <xref ref-type="table" rid="T4">4</xref>. The equations are seen to capture the relationships between parameters and SST accurately (Figure <xref ref-type="fig" rid="F5">5</xref> and Table <xref ref-type="table" rid="T4">4</xref>).</p>
<table-wrap position="float" id="T4">
<label>Table 4</label>
<caption><p><bold>Parameter values for Equations (12) and (15)</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Model parameter</bold></th>
<th valign="top" align="center"><bold>Equation</bold></th>
<th valign="top" align="center" colspan="4"><bold>Parameters for equations 12 and 15</bold></th>
<th valign="top" align="center"><bold><italic>r</italic><xref ref-type="table-fn" rid="TN16"><sup>&#x00023;</sup></xref></bold></th>
<th valign="top" align="center"><bold><italic>p</italic> <xref ref-type="table-fn" rid="TN17"><sup>&#x00026;</sup></xref></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="M40"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula><xref ref-type="table-fn" rid="TN18"><sup>&#x0002A;</sup></xref></td>
<td valign="top" align="center">12</td>
<td valign="top" align="center"><italic>G</italic><sub>1</sub> &#x0003D; &#x02212;1.51 (&#x02212;1.57&#x02194;&#x02212;1.43)</td>
<td valign="top" align="center"><italic>G</italic><sub>2</sub> &#x0003D; &#x02212;1.25 (&#x02212;1.41&#x02194;&#x02212;1.25)</td>
<td valign="top" align="center"><italic>G</italic><sub>3</sub> &#x0003D; 14.95 (14.87&#x02194;15.05)</td>
<td valign="top" align="center"><italic>G</italic><sub>4</sub> &#x0003D; 0.25 (0.23&#x02194;0.26)</td>
<td valign="top" align="center">0.98</td>
<td valign="top" align="center">&#x0003C;0.001</td>
</tr>
<tr>
<td valign="top" align="left"><inline-formula><mml:math id="M41"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula><xref ref-type="table-fn" rid="TN18"><sup>&#x0002A;</sup></xref></td>
<td valign="top" align="center">13</td>
<td valign="top" align="center"><italic>H</italic><sub>1</sub> &#x0003D; 0.29 (0.28&#x02194;0.30)</td>
<td valign="top" align="center"><italic>H</italic><sub>2</sub> &#x0003D; 3.05 (2.87&#x02194;3.26)</td>
<td valign="top" align="center"><italic>H</italic><sub>3</sub> &#x0003D; 16.24 (16.19&#x02194;16.29)</td>
<td valign="top" align="center"><italic>H</italic><sub>4</sub> &#x0003D; 0.56 (0.55&#x02194;0.57)</td>
<td valign="top" align="center">0.91</td>
<td valign="top" align="center">&#x0003C;0.001</td>
</tr>
<tr>
<td valign="top" align="left"><italic>D</italic><sub><italic>p,n</italic></sub></td>
<td valign="top" align="center">14</td>
<td valign="top" align="center"><italic>J</italic><sub>1</sub> &#x0003D; 0.370 (0.367&#x02194;0.373)</td>
<td valign="top" align="center"><italic>J</italic><sub>2</sub> &#x0003D; 1.13 (1.10&#x02194;1.16)</td>
<td valign="top" align="center"><italic>J</italic><sub>3</sub> &#x0003D; 14.89 (14.87&#x02194;14.91)</td>
<td valign="top" align="center"><italic>J</italic><sub>4</sub> &#x0003D; 0.569 (0.566&#x02194;0.571)</td>
<td valign="top" align="center">1.00</td>
<td valign="top" align="center">&#x0003C;0.001</td>
</tr>
<tr>
<td valign="top" align="left"><italic>D</italic><sub><italic>p</italic></sub></td>
<td valign="top" align="center">15</td>
<td valign="top" align="center"><italic>K</italic><sub>1</sub> &#x0003D; 0.503 (0.501&#x02194;0.505)</td>
<td valign="top" align="center"><italic>K</italic><sub>2</sub> &#x0003D; 1.33 (1.31&#x02194;1.37)</td>
<td valign="top" align="center"><italic>K</italic><sub>3</sub> &#x0003D; 17.31 (17.28&#x02194;17.32)</td>
<td valign="top" align="center"><italic>K</italic><sub>4</sub> &#x0003D; 0.258 (0.256&#x02194;0.259)</td>
<td valign="top" align="center">1.00</td>
<td valign="top" align="center">&#x0003C;0.001</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic><sup>$</sup>Model parameters are computed as the median of the bootstrap parameter distribution and bracket parameter values refer to the 2.5 and 97.5% confidence intervals on the distribution</italic>.</p>
<fn id="TN16">
<label>&#x00023;</label>
<p><italic>Correlation coefficients (r) were computed using the median parameter values reported</italic>.</p></fn>
<fn id="TN17">
<label>&#x00026;</label>
<p><italic>p refers to the significance of each correlation (&#x0003C; 0.001 is highly significant), computed using the correlation coefficient (r) and the number of samples (N), based on the probability that the correlation could have been produced by random data</italic>.</p></fn>
<fn id="TN18">
<label>&#x0002A;</label>
<p><italic>Denotes units in mg m<sup>&#x02212;3</sup></italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Figure <xref ref-type="fig" rid="F6">6</xref> shows simulations of size-fractionated chlorophyll as a function of total chlorophyll for different SST, when incorporating (Equations 12&#x02013;15) into the three-component model (Equations 10 and 11). In general, the performance for all size classes improved when using the SST-dependent parameterization, when compared with that using a single set of parameters (Figure <xref ref-type="fig" rid="F7">7</xref>), with a significant improvement in the correlation coefficient for <italic>C</italic><sub><italic>p</italic></sub> (<italic>Z</italic>-test, <italic>p</italic> &#x0003C; 0.05). Whereas modeled <italic>C</italic><sub><italic>p,n</italic></sub>, <italic>C</italic><sub><italic>n</italic></sub>, and <italic>C</italic><sub><italic>p</italic></sub> reach static asymptotes at high concentrations when using a single set of parameters (see Figure <xref ref-type="fig" rid="F7">7</xref>, top-row, horizontal purple dashed lines), the SST-dependent parameterization does not, and captures the variability in the size-fractionated chlorophyll at these higher concentrations.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p><bold>Size-fractionated chlorophyll (A&#x02013;D) and the fractions of total chlorophyll in each size class <bold>(E&#x02013;H)</bold> plotted as a function of the total chlorophyll using the re-tuned (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>) model, and varying the parameters according to the sea surface temperature (SST) (Equations 12&#x02013;15)</bold>. Dashed black lines refer to the re-tuned model using a single set of parameters (Table <xref ref-type="table" rid="T3">3</xref>).</p></caption>
<graphic xlink:href="fmars-04-00104-g0006.tif"/>
</fig>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p><bold>The modeled size-fractionated chlorophyll plotted against <italic><bold>in situ</bold></italic> size-fractionated chlorophyll in the parameterization dataset, for the re-tuned (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>) model with a single set of parameters (top-row, Table <xref ref-type="table" rid="T3">3</xref>) and using the SST-dependent parameterization (<bold>bottom row</bold>, Equations 12&#x02013;15, Table <xref ref-type="table" rid="T4">4</xref>)</bold>. The superscript SST denotes the modeled chlorophyll concentrations using the SST-dependent parameterization. The correlation coefficient (<italic>r</italic>) and root-mean-square-error (&#x003A8;) are also shown. Statistical tests were computed using the parameter values reported in Tables <xref ref-type="table" rid="T3">3</xref>, <xref ref-type="table" rid="T4">4</xref>. The top panels also show the maximum attainable concentrations for the different size classes as purple dashed horizontal lines when using a single set of parameters (Table <xref ref-type="table" rid="T3">3</xref>).</p></caption>
<graphic xlink:href="fmars-04-00104-g0007.tif"/>
</fig>
</sec>
<sec>
<title>2.6.3. Partitioning of microphytoplankton chlorophyll into diatoms and dinoflagellates</title>
<p>Considering diatoms are known to dominate the microphytoplankton community in the North Atlantic during the initiation of the spring bloom when SST is still relatively low and nutrient concentrations high (Ducklow and Harris, <xref ref-type="bibr" rid="B40">1993</xref>; Sieracki et al., <xref ref-type="bibr" rid="B107">1993</xref>; Savidge et al., <xref ref-type="bibr" rid="B103">1995</xref>), and that dinoflagellates typically increase in late summer and early autumn (McQuatters-Gollop et al., <xref ref-type="bibr" rid="B76">2007</xref>; Widdicombe et al., <xref ref-type="bibr" rid="B128">2010</xref>) when SST is generally at its highest in the North Atlantic, we investigated the use of SST to partition microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>) into diatoms (<italic>C</italic><sub><italic>diat</italic></sub>) and dinoflagellates (<italic>C</italic><sub><italic>dino</italic></sub>). Figure <xref ref-type="fig" rid="F8">8A</xref> shows a significant relationship between ratio of <italic>C</italic><sub><italic>dino</italic></sub> to <italic>C</italic><sub><italic>m</italic></sub> and SST (<italic>r</italic> &#x0003D; 0.28, <italic>p</italic> &#x0003C; 0.001), with the ratio increasing with increasing SST. We modeled this relationship by fitting a logistic function to the data (Figure <xref ref-type="fig" rid="F8">8A</xref>), such that
<disp-formula id="E16"><label>(16)</label><mml:math id="M42"><mml:mrow><mml:mfrac><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>d</mml:mi><mml:mi>i</mml:mi><mml:mi>n</mml:mi><mml:mi>o</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mrow><mml:mn>1</mml:mn><mml:mo>+</mml:mo><mml:mi>exp</mml:mi><mml:mo stretchy='false'>[</mml:mo><mml:mo>&#x02212;</mml:mo><mml:mi>&#x003B1;</mml:mi><mml:mo stretchy='false'>(</mml:mo><mml:mtext>SST</mml:mtext><mml:mo>&#x02212;</mml:mo><mml:mi>&#x003B2;</mml:mi><mml:mo stretchy='false'>)</mml:mo><mml:mo stretchy='false'>]</mml:mo></mml:mrow></mml:mfrac><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
where &#x003B1; &#x0003D; 0.10 (0.08&#x02194;0.13) and &#x003B2; &#x0003D; 32.5 (29.7&#x02194;36.1). Figures <xref ref-type="fig" rid="F8">8B,C</xref> show model estimates of <italic>C</italic><sub><italic>dino</italic></sub> (obtained by multiplying the modeled ratio (Equation 16) by <italic>C</italic><sub><italic>m</italic></sub>) plotted against measured <italic>C</italic><sub><italic>dino</italic></sub>, and estimates of <italic>C</italic><sub><italic>diat</italic></sub> (obtained as <italic>C</italic><sub><italic>m</italic></sub>(1&#x02212;(<italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub>))) against measured <italic>C</italic><sub><italic>diat</italic></sub>. In general, there is good agreement between the estimates and measurements, with higher correlations and lower root mean square errors for <italic>C</italic><sub><italic>diat</italic></sub> compared with <italic>C</italic><sub><italic>dino</italic></sub> (Figures <xref ref-type="fig" rid="F8">8B,C</xref>). Combining estimates of <italic>C</italic><sub><italic>m</italic></sub> using the three component model (Equations 10&#x02013;15) with estimates of the ratio of <italic>C</italic><sub><italic>dino</italic></sub> to <italic>C</italic><sub><italic>m</italic></sub> (Equation 16), <italic>C</italic><sub><italic>dino</italic></sub> and <italic>C</italic><sub><italic>diat</italic></sub> can be estimated as a function of total chlorophyll (<italic>C</italic>) and SST.</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p><bold>(A) The ratio of dinoflagellate chlorophyll (<italic>C</italic><sub><italic>dino</italic></sub>) to microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>) plotted as a function of sea surface temperature (SST)</bold>. Gray points show raw values, black dots are binned averages with 95% confidence intervals on the averages, and red line show the fitted model (Equation 16). <bold>(B)</bold> Shows the modeled ratio (Equation 16) multiplied by microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>) to estimate <italic>C</italic><sub><italic>dino</italic></sub>, plotted against measured <italic>C</italic><sub><italic>dino</italic></sub>. <bold>(C)</bold> Shows one minus the modeled ratio (Equation 16) multiplied by microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>) to estimate <italic>C</italic><sub><italic>diat</italic></sub>, plotted against measured <italic>C</italic><sub><italic>diat</italic></sub>. <italic>r</italic> is the correlation coefficient and &#x003A8; the root-mean-square-error.</p></caption>
<graphic xlink:href="fmars-04-00104-g0008.tif"/>
</fig>
</sec>
</sec>
<sec>
<title>2.7. Validation of the satellite model, estimates of per-pixel uncertainty and application to satellite data</title>
<p>The satellite match-up dataset (not used for model parameterization) was used to validate the model by using satellite-derived total chlorophyll (OC-CCI) and SST (NOAA OISST) as inputs to Equations (10&#x02013;15) and comparing the results with independent <italic>in situ</italic> chlorophyll concentrations for each phytoplankton group. In addition, the satellite match-ups were partitioned into 14 OWT by selecting the highest OWT membership for each sample. The root mean square error (&#x003A8;, Equation 1) and bias (&#x003B4;, Equation 2) in the satellite estimates were computed separately for each OWT and for each phytoplankton group.</p>
<p>We applied the model to a relatively cloud-free 8-day chlorophyll (OC-CCI) and SST (NOAA OISST) composite for the data between 17th and 24th June 2008, to illustrate its application to a satellite image. Uncertainties (&#x003A8; and &#x003B4;) in each pixel of the study area were computed by weighing the uncertainties in each OWT by their membership. For instance, &#x003A8; at a given pixel for a hypothetical phytoplankton group would be computed as</p>
<disp-formula id="E17"><label>(17)</label><mml:math id="M43"><mml:mrow><mml:mi>&#x003A8;</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mn>14</mml:mn></mml:mrow></mml:msubsup><mml:mrow><mml:msub><mml:mi>&#x003A8;</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>T</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle></mml:mrow><mml:mrow><mml:mstyle displaystyle='true'><mml:msubsup><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mtext>&#x000A0;</mml:mtext><mml:mo>=</mml:mo><mml:mtext>&#x000A0;</mml:mtext><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mn>14</mml:mn></mml:mrow></mml:msubsup><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mstyle></mml:mrow></mml:mfrac><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
<p>where <italic>i</italic> represents each OWT and <italic>T</italic> represents the membership of each OWT.</p>
</sec>
</sec>
<sec id="s3">
<title>3. Results and discussion</title>
<sec>
<title>3.1. Satellite validation</title>
<p>Considering the agreement between total satellite and <italic>in situ</italic> chlorophyll in the validation dataset (<italic>r</italic> &#x0003D; 0.86, &#x003A8; &#x0003D; 0.29, &#x003B4; &#x0003D; &#x02212;0.01), the satellite estimates of size-fractionated chlorophyll compare well with the independent <italic>in situ</italic> data (Figure <xref ref-type="fig" rid="F9">9</xref>, <italic>r</italic> &#x0003D; 0.49 to 0.86, and &#x003A8; &#x0003D; 0.30 to 0.45), in agreement with previous studies (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>, <xref ref-type="bibr" rid="B15">2012b</xref>; Lin et al., <xref ref-type="bibr" rid="B67">2014</xref>; Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>). Although the SST-dependent parameterization (<inline-formula><mml:math id="M44"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>) has a similar statistical performance compared with that obtained when using a single set of parameters, the SST-dependent parameterization is not constrained by static asymptotes for <italic>C</italic><sub><italic>p,n</italic></sub>, <italic>C</italic><sub><italic>n</italic></sub>, and <italic>C</italic><sub><italic>p</italic></sub> (Figure <xref ref-type="fig" rid="F9">9</xref> top-row, horizontal purple dashed lines) and captures better the variability in the size-fractionated chlorophyll at these higher concentrations. Correlation coefficients for picoplankton chlorophyll are higher for the SST-dependent parameterization (<inline-formula><mml:math id="M45"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>) when compared with the single set of parameters (<italic>C</italic><sub><italic>p</italic></sub>) in both the parameterization (Figure <xref ref-type="fig" rid="F7">7</xref>) and validation (Figure <xref ref-type="fig" rid="F9">9</xref>) datasets. This finding is consistent with results from Pan et al. (<xref ref-type="bibr" rid="B86">2013</xref>) who highlighted the benefits of including SST when estimating zeaxanthin (diagnostic pigment for picoplankton) from satellite data.</p>
<fig id="F9" position="float">
<label>Figure 9</label>
<caption><p><bold>Satellite estimates of size-fractionated chlorophyll plotted against independent <italic><bold>in situ</bold></italic> size-fractionated chlorophyll in the validation dataset, for the re-tuned (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>) model with a single set of parameters (top-row, Table <xref ref-type="table" rid="T3">3</xref>) and using the SST-dependent parameterization (<bold>bottom row</bold>, Equations 12&#x02013;15)</bold>. The superscript SST denotes the modeled chlorophyll concentrations using the SST-dependent parameterization. The correlation coefficient (<italic>r</italic>) and root-mean-square-error (&#x003A8;) are also shown. Statistical tests were computed using the parameter values reported in Tables <xref ref-type="table" rid="T3">3</xref>, <xref ref-type="table" rid="T4">4</xref>. The top panels also show the maximum attainable concentrations for the different size classes as purple dashed horizontal lines when using a single set of parameters (Table <xref ref-type="table" rid="T3">3</xref>).</p></caption>
<graphic xlink:href="fmars-04-00104-g0009.tif"/>
</fig>
<p>Satellite estimates of diatom and dinoflagellate chlorophyll also compare reasonably well with the independent <italic>in situ</italic> data (Figure <xref ref-type="fig" rid="F10">10</xref>). Satellite estimates of diatom chlorophyll have higher correlation coefficient (<italic>r</italic>) and lower error (&#x003A8;) when compared with dinoflagellate chlorophyll estimates, suggesting better performance for this phytoplankton group. High errors in satellite estimates of dinoflagellate chlorophyll reflect how challenging it is to retrieve this phytoplankton group from space (Raitsos et al., <xref ref-type="bibr" rid="B93">2008</xref>; Shang et al., <xref ref-type="bibr" rid="B105">2014</xref>), though it is encouraging to observe significant correlations between the satellite and <italic>in situ</italic> dinoflagellate chlorophyll concentrations (<italic>r</italic> &#x0003E; 0.64, <italic>p</italic> &#x0003C; 0.001) in the validation dataset, especially when considering the lower range of chlorophyll variability in dinoflagellates (Figure <xref ref-type="fig" rid="F10">10</xref>).</p>
<fig id="F10" position="float">
<label>Figure 10</label>
<caption><p><bold>Satellite estimates of diatom (<italic><bold>C</bold></italic><sub><italic><bold>diat</bold></italic></sub>) and dinoflagellate (<italic><bold>C</bold></italic><sub><italic><bold>dino</bold></italic></sub>) chlorophyll plotted against independent <italic><bold>in situ</bold></italic> estimates of <italic><bold>C</bold></italic><sub><italic><bold>diat</bold></italic></sub> and <italic><bold>C</bold></italic><sub><italic><bold>dino</bold></italic></sub> in the validation dataset, using the Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>) model with a single set of parameters (top-row, Table <xref ref-type="table" rid="T3">3</xref>) together with estimates of <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> (Equation 16), and using the SST-dependent parameterization (<bold>bottom row</bold>, Equations 12&#x02013;15) together with estimates of <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> (Equation 16)</bold>. The superscript SST denotes the modeled microplankton chlorophyll using the SST-dependent parameterization (Equations 12&#x02013;15) multiplied by estimates of <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> (Equation 16). The correlation coefficient (<italic>r</italic>) and root-mean-square-error (&#x003A8;) are also shown.</p></caption>
<graphic xlink:href="fmars-04-00104-g0010.tif"/>
</fig>
</sec>
<sec>
<title>3.2. Changes in performance with optical water types (OWT)</title>
<p>For each of the 14 OWT and for each of the phytoplankton groups, the root mean square error (&#x003A8;), bias (&#x003B4;) and number of observations (<italic>N</italic>) for match-ups in the validation dataset are provided in Table <xref ref-type="table" rid="T5">5</xref>. The &#x003A8;, &#x003B4;, and <italic>N</italic> are also plotted in Figure <xref ref-type="fig" rid="F11">11</xref> for satellite estimates of total chlorophyll and chlorophyll for the four phytoplankton groups using the SST-dependent parameterization (Equations 12 to 15). The &#x003A8; values in each OWT for total chlorophyll are consistent with those provided in version 3.0 of the OC-CCI dataset, based on a much larger global match-up dataset (&#x0007E;14,500) (Figure <xref ref-type="fig" rid="F11">11A</xref>). The &#x003A8; values for total chlorophyll increase from lower OWTs (characteristic of oligotrophic open-ocean waters) to higher OWTs (characteristic of more optically complex turbid coastal waters). A result that is also consistent with the original work of Moore et al. (<xref ref-type="bibr" rid="B79">2009</xref>), see their Table 2, and the theoretical limitations of using empirical ocean-color chlorophyll algorithms in optically-complex waters (IOCCG, <xref ref-type="bibr" rid="B54">2000</xref>). Biases (&#x003B4;) in total chlorophyll are generally quite low (Figure <xref ref-type="fig" rid="F11">11B</xref>), consistent with version 3.0 of the OC-CCI dataset, though do not always have the same sign, and are much higher for OWT14, probably due to very few match-ups (<italic>N</italic> &#x0003D; 4) in this class (Figure <xref ref-type="fig" rid="F11">11B</xref>).</p>
<table-wrap position="float" id="T5">
<label>Table 5</label>
<caption><p><bold>Root mean square error (&#x003A8;) and bias (&#x003B4;) for 14 OC-CCI optical water types (OWT) for the four phytoplankton groups, using the two approaches (SST-dependent with superscript SST, and single set of parameters) to estimate phytoplankton group chlorophyll from satellite data</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>OWT</bold></th>
<th valign="top" align="center" colspan="6" style="border-bottom: thin solid #000000;"><bold>Picoplankton</bold></th>
<th valign="top" align="center" colspan="6" style="border-bottom: thin solid #000000;"><bold>Nanoplankton</bold></th>
<th valign="top" align="center" colspan="6" style="border-bottom: thin solid #000000;"><bold>Diatoms</bold></th>
<th valign="top" align="center" colspan="6" style="border-bottom: thin solid #000000;"><bold>Dinoflagellates</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><inline-formula><mml:math id="M46"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><italic><bold>C</bold></italic><sub><bold><italic><bold>p</bold></italic></bold></sub></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><inline-formula><mml:math id="M47"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><italic><bold>C</bold></italic><sub><bold><italic><bold>n</bold></italic></bold></sub></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><inline-formula><mml:math id="M48"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>d</mml:mi><mml:mi>i</mml:mi><mml:mi>a</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><italic><bold>C</bold></italic><sub><bold><italic><bold>diat</bold></italic></bold></sub></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><inline-formula><mml:math id="M49"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>d</mml:mi><mml:mi>i</mml:mi><mml:mi>n</mml:mi><mml:mi>o</mml:mi></mml:mrow><mml:mrow><mml:mi>S</mml:mi><mml:mi>S</mml:mi><mml:mi>T</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><italic><bold>C</bold></italic><sub><bold><italic><bold>dino</bold></italic></bold></sub></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
<th valign="top" align="char" char="."><bold>&#x003A8;</bold></th>
<th valign="top" align="char" char="."><bold>&#x003B4;</bold></th>
<th valign="top" align="char" char="."><bold><italic>N</italic></bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">1</td>
<td valign="top" align="char" char=".">0.13</td>
<td valign="top" align="char" char=".">&#x02212;0.03</td>
<td valign="top" align="char" char=".">13</td>
<td valign="top" align="char" char=".">0.14</td>
<td valign="top" align="char" char=".">&#x02212;0.06</td>
<td valign="top" align="char" char=".">13</td>
<td valign="top" align="char" char=".">0.37</td>
<td valign="top" align="char" char=".">&#x02212;0.11</td>
<td valign="top" align="char" char=".">13</td>
<td valign="top" align="char" char=".">0.39</td>
<td valign="top" align="char" char=".">&#x02212;0.16</td>
<td valign="top" align="char" char=".">13</td>
<td valign="top" align="char" char=".">0.28</td>
<td valign="top" align="char" char=".">&#x02212;0.04</td>
<td valign="top" align="char" char=".">9</td>
<td valign="top" align="char" char=".">0.34</td>
<td valign="top" align="char" char=".">0.19</td>
<td valign="top" align="char" char=".">9</td>
<td valign="top" align="char" char=".">0.18</td>
<td valign="top" align="char" char=".">&#x02212;0.11</td>
<td valign="top" align="char" char=".">6</td>
<td valign="top" align="char" char=".">0.19</td>
<td valign="top" align="char" char=".">0.12</td>
<td valign="top" align="char" char=".">6</td>
</tr>
<tr>
<td valign="top" align="left">2</td>
<td valign="top" align="char" char=".">0.28</td>
<td valign="top" align="char" char=".">&#x02212;0.13</td>
<td valign="top" align="char" char=".">9</td>
<td valign="top" align="char" char=".">0.29</td>
<td valign="top" align="char" char=".">&#x02212;0.15</td>
<td valign="top" align="char" char=".">9</td>
<td valign="top" align="char" char=".">0.40</td>
<td valign="top" align="char" char=".">0.01</td>
<td valign="top" align="char" char=".">9</td>
<td valign="top" align="char" char=".">0.41</td>
<td valign="top" align="char" char=".">&#x02212;0.04</td>
<td valign="top" align="char" char=".">9</td>
<td valign="top" align="char" char=".">0.50</td>
<td valign="top" align="char" char=".">&#x02212;0.30</td>
<td valign="top" align="char" char=".">6</td>
<td valign="top" align="char" char=".">0.41</td>
<td valign="top" align="char" char=".">&#x02212;0.07</td>
<td valign="top" align="char" char=".">6</td>
<td valign="top" align="char" char=".">0.15</td>
<td valign="top" align="char" char=".">&#x02212;0.07</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">0.20</td>
<td valign="top" align="char" char=".">0.16</td>
<td valign="top" align="char" char=".">4</td>
</tr>
<tr>
<td valign="top" align="left">3</td>
<td valign="top" align="char" char=".">0.16</td>
<td valign="top" align="char" char=".">0.04</td>
<td valign="top" align="char" char=".">67</td>
<td valign="top" align="char" char=".">0.16</td>
<td valign="top" align="char" char=".">0.02</td>
<td valign="top" align="char" char=".">67</td>
<td valign="top" align="char" char=".">0.28</td>
<td valign="top" align="char" char=".">0.09</td>
<td valign="top" align="char" char=".">58</td>
<td valign="top" align="char" char=".">0.27</td>
<td valign="top" align="char" char=".">0.05</td>
<td valign="top" align="char" char=".">58</td>
<td valign="top" align="char" char=".">0.37</td>
<td valign="top" align="char" char=".">0.05</td>
<td valign="top" align="char" char=".">50</td>
<td valign="top" align="char" char=".">0.45</td>
<td valign="top" align="char" char=".">0.26</td>
<td valign="top" align="char" char=".">50</td>
<td valign="top" align="char" char=".">0.17</td>
<td valign="top" align="char" char=".">0.03</td>
<td valign="top" align="char" char=".">40</td>
<td valign="top" align="char" char=".">0.29</td>
<td valign="top" align="char" char=".">0.24</td>
<td valign="top" align="char" char=".">40</td>
</tr>
<tr>
<td valign="top" align="left">4</td>
<td valign="top" align="char" char=".">0.19</td>
<td valign="top" align="char" char=".">0.06</td>
<td valign="top" align="char" char=".">42</td>
<td valign="top" align="char" char=".">0.19</td>
<td valign="top" align="char" char=".">0.04</td>
<td valign="top" align="char" char=".">42</td>
<td valign="top" align="char" char=".">0.30</td>
<td valign="top" align="char" char=".">0.11</td>
<td valign="top" align="char" char=".">39</td>
<td valign="top" align="char" char=".">0.29</td>
<td valign="top" align="char" char=".">0.06</td>
<td valign="top" align="char" char=".">39</td>
<td valign="top" align="char" char=".">0.41</td>
<td valign="top" align="char" char=".">&#x02212;0.10</td>
<td valign="top" align="char" char=".">33</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">0.08</td>
<td valign="top" align="char" char=".">33</td>
<td valign="top" align="char" char=".">0.28</td>
<td valign="top" align="char" char=".">0.12</td>
<td valign="top" align="char" char=".">22</td>
<td valign="top" align="char" char=".">0.39</td>
<td valign="top" align="char" char=".">0.30</td>
<td valign="top" align="char" char=".">22</td>
</tr>
<tr>
<td valign="top" align="left">5</td>
<td valign="top" align="char" char=".">0.22</td>
<td valign="top" align="char" char=".">0.08</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.22</td>
<td valign="top" align="char" char=".">0.07</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.26</td>
<td valign="top" align="char" char=".">0.09</td>
<td valign="top" align="char" char=".">33</td>
<td valign="top" align="char" char=".">0.26</td>
<td valign="top" align="char" char=".">0.03</td>
<td valign="top" align="char" char=".">33</td>
<td valign="top" align="char" char=".">0.40</td>
<td valign="top" align="char" char=".">0.03</td>
<td valign="top" align="char" char=".">26</td>
<td valign="top" align="char" char=".">0.43</td>
<td valign="top" align="char" char=".">0.18</td>
<td valign="top" align="char" char=".">26</td>
<td valign="top" align="char" char=".">0.30</td>
<td valign="top" align="char" char=".">0.26</td>
<td valign="top" align="char" char=".">14</td>
<td valign="top" align="char" char=".">0.44</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">14</td>
</tr>
<tr>
<td valign="top" align="left">6</td>
<td valign="top" align="char" char=".">0.20</td>
<td valign="top" align="char" char=".">0.08</td>
<td valign="top" align="char" char=".">41</td>
<td valign="top" align="char" char=".">0.23</td>
<td valign="top" align="char" char=".">0.11</td>
<td valign="top" align="char" char=".">41</td>
<td valign="top" align="char" char=".">0.32</td>
<td valign="top" align="char" char=".">0.13</td>
<td valign="top" align="char" char=".">41</td>
<td valign="top" align="char" char=".">0.32</td>
<td valign="top" align="char" char=".">0.06</td>
<td valign="top" align="char" char=".">41</td>
<td valign="top" align="char" char=".">0.54</td>
<td valign="top" align="char" char=".">0.23</td>
<td valign="top" align="char" char=".">39</td>
<td valign="top" align="char" char=".">0.59</td>
<td valign="top" align="char" char=".">0.32</td>
<td valign="top" align="char" char=".">39</td>
<td valign="top" align="char" char=".">0.32</td>
<td valign="top" align="char" char=".">0.05</td>
<td valign="top" align="char" char=".">27</td>
<td valign="top" align="char" char=".">0.36</td>
<td valign="top" align="char" char=".">0.14</td>
<td valign="top" align="char" char=".">27</td>
</tr>
<tr>
<td valign="top" align="left">7</td>
<td valign="top" align="char" char=".">0.49</td>
<td valign="top" align="char" char=".">0.22</td>
<td valign="top" align="char" char=".">41</td>
<td valign="top" align="char" char=".">0.50</td>
<td valign="top" align="char" char=".">0.23</td>
<td valign="top" align="char" char=".">41</td>
<td valign="top" align="char" char=".">0.35</td>
<td valign="top" align="char" char=".">0.11</td>
<td valign="top" align="char" char=".">38</td>
<td valign="top" align="char" char=".">0.34</td>
<td valign="top" align="char" char=".">0.09</td>
<td valign="top" align="char" char=".">38</td>
<td valign="top" align="char" char=".">0.60</td>
<td valign="top" align="char" char=".">0.05</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.62</td>
<td valign="top" align="char" char=".">0.11</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.47</td>
<td valign="top" align="char" char=".">&#x02212;0.05</td>
<td valign="top" align="char" char=".">27</td>
<td valign="top" align="char" char=".">0.47</td>
<td valign="top" align="char" char=".">0.01</td>
<td valign="top" align="char" char=".">27</td>
</tr>
<tr>
<td valign="top" align="left">8</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">0.17</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">0.20</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.39</td>
<td valign="top" align="char" char=".">&#x02212;0.07</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.37</td>
<td valign="top" align="char" char=".">&#x02212;0.07</td>
<td valign="top" align="char" char=".">36</td>
<td valign="top" align="char" char=".">0.49</td>
<td valign="top" align="char" char=".">0.15</td>
<td valign="top" align="char" char=".">34</td>
<td valign="top" align="char" char=".">0.51</td>
<td valign="top" align="char" char=".">0.14</td>
<td valign="top" align="char" char=".">34</td>
<td valign="top" align="char" char=".">0.33</td>
<td valign="top" align="char" char=".">0.03</td>
<td valign="top" align="char" char=".">31</td>
<td valign="top" align="char" char=".">0.35</td>
<td valign="top" align="char" char=".">0.02</td>
<td valign="top" align="char" char=".">31</td>
</tr>
<tr>
<td valign="top" align="left">9</td>
<td valign="top" align="char" char=".">0.39</td>
<td valign="top" align="char" char=".">0.20</td>
<td valign="top" align="char" char=".">79</td>
<td valign="top" align="char" char=".">0.36</td>
<td valign="top" align="char" char=".">0.19</td>
<td valign="top" align="char" char=".">79</td>
<td valign="top" align="char" char=".">0.40</td>
<td valign="top" align="char" char=".">0.12</td>
<td valign="top" align="char" char=".">67</td>
<td valign="top" align="char" char=".">0.40</td>
<td valign="top" align="char" char=".">0.14</td>
<td valign="top" align="char" char=".">67</td>
<td valign="top" align="char" char=".">0.56</td>
<td valign="top" align="char" char=".">&#x02212;0.17</td>
<td valign="top" align="char" char=".">64</td>
<td valign="top" align="char" char=".">0.57</td>
<td valign="top" align="char" char=".">&#x02212;0.15</td>
<td valign="top" align="char" char=".">64</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">0.13</td>
<td valign="top" align="char" char=".">49</td>
<td valign="top" align="char" char=".">0.43</td>
<td valign="top" align="char" char=".">0.14</td>
<td valign="top" align="char" char=".">49</td>
</tr>
<tr>
<td valign="top" align="left">10</td>
<td valign="top" align="char" char=".">0.41</td>
<td valign="top" align="char" char=".">0.15</td>
<td valign="top" align="char" char=".">111</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">0.06</td>
<td valign="top" align="char" char=".">111</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">0.11</td>
<td valign="top" align="char" char=".">108</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">0.14</td>
<td valign="top" align="char" char=".">108</td>
<td valign="top" align="char" char=".">0.52</td>
<td valign="top" align="char" char=".">&#x02212;0.22</td>
<td valign="top" align="char" char=".">99</td>
<td valign="top" align="char" char=".">0.53</td>
<td valign="top" align="char" char=".">&#x02212;0.21</td>
<td valign="top" align="char" char=".">99</td>
<td valign="top" align="char" char=".">0.50</td>
<td valign="top" align="char" char=".">0.32</td>
<td valign="top" align="char" char=".">91</td>
<td valign="top" align="char" char=".">0.51</td>
<td valign="top" align="char" char=".">0.33</td>
<td valign="top" align="char" char=".">91</td>
</tr>
<tr>
<td valign="top" align="left">11</td>
<td valign="top" align="char" char=".">0.35</td>
<td valign="top" align="char" char=".">0.13</td>
<td valign="top" align="char" char=".">158</td>
<td valign="top" align="char" char=".">0.33</td>
<td valign="top" align="char" char=".">&#x02212;0.04</td>
<td valign="top" align="char" char=".">158</td>
<td valign="top" align="char" char=".">0.48</td>
<td valign="top" align="char" char=".">0.20</td>
<td valign="top" align="char" char=".">152</td>
<td valign="top" align="char" char=".">0.48</td>
<td valign="top" align="char" char=".">0.22</td>
<td valign="top" align="char" char=".">152</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">&#x02212;0.19</td>
<td valign="top" align="char" char=".">145</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">&#x02212;0.17</td>
<td valign="top" align="char" char=".">145</td>
<td valign="top" align="char" char=".">0.70</td>
<td valign="top" align="char" char=".">0.45</td>
<td valign="top" align="char" char=".">139</td>
<td valign="top" align="char" char=".">0.72</td>
<td valign="top" align="char" char=".">0.47</td>
<td valign="top" align="char" char=".">139</td>
</tr>
<tr>
<td valign="top" align="left">12</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">0.08</td>
<td valign="top" align="char" char=".">147</td>
<td valign="top" align="char" char=".">0.42</td>
<td valign="top" align="char" char=".">&#x02212;0.10</td>
<td valign="top" align="char" char=".">147</td>
<td valign="top" align="char" char=".">0.50</td>
<td valign="top" align="char" char=".">0.21</td>
<td valign="top" align="char" char=".">139</td>
<td valign="top" align="char" char=".">0.54</td>
<td valign="top" align="char" char=".">0.27</td>
<td valign="top" align="char" char=".">139</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">&#x02212;0.05</td>
<td valign="top" align="char" char=".">132</td>
<td valign="top" align="char" char=".">0.38</td>
<td valign="top" align="char" char=".">&#x02212;0.05</td>
<td valign="top" align="char" char=".">132</td>
<td valign="top" align="char" char=".">0.67</td>
<td valign="top" align="char" char=".">0.39</td>
<td valign="top" align="char" char=".">129</td>
<td valign="top" align="char" char=".">0.68</td>
<td valign="top" align="char" char=".">0.39</td>
<td valign="top" align="char" char=".">129</td>
</tr>
<tr>
<td valign="top" align="left">13</td>
<td valign="top" align="char" char=".">0.58</td>
<td valign="top" align="char" char=".">0.21</td>
<td valign="top" align="char" char=".">21</td>
<td valign="top" align="char" char=".">0.55</td>
<td valign="top" align="char" char=".">0.08</td>
<td valign="top" align="char" char=".">21</td>
<td valign="top" align="char" char=".">0.63</td>
<td valign="top" align="char" char=".">0.18</td>
<td valign="top" align="char" char=".">21</td>
<td valign="top" align="char" char=".">0.61</td>
<td valign="top" align="char" char=".">0.22</td>
<td valign="top" align="char" char=".">21</td>
<td valign="top" align="char" char=".">0.55</td>
<td valign="top" align="char" char=".">0.03</td>
<td valign="top" align="char" char=".">21</td>
<td valign="top" align="char" char=".">0.54</td>
<td valign="top" align="char" char=".">0.04</td>
<td valign="top" align="char" char=".">21</td>
<td valign="top" align="char" char=".">0.83</td>
<td valign="top" align="char" char=".">0.07</td>
<td valign="top" align="char" char=".">17</td>
<td valign="top" align="char" char=".">0.82</td>
<td valign="top" align="char" char=".">0.10</td>
<td valign="top" align="char" char=".">17</td>
</tr>
<tr>
<td valign="top" align="left">14</td>
<td valign="top" align="char" char=".">0.44</td>
<td valign="top" align="char" char=".">0.41</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">0.15</td>
<td valign="top" align="char" char=".">&#x02212;0.04</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">0.70</td>
<td valign="top" align="char" char=".">0.68</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">0.62</td>
<td valign="top" align="char" char=".">0.60</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">0.79</td>
<td valign="top" align="char" char=".">0.79</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">0.88</td>
<td valign="top" align="char" char=".">0.87</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">1.44</td>
<td valign="top" align="char" char=".">1.37</td>
<td valign="top" align="char" char=".">4</td>
<td valign="top" align="char" char=".">1.52</td>
<td valign="top" align="char" char=".">1.45</td>
<td valign="top" align="char" char=".">4</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F11" position="float">
<label>Figure 11</label>
<caption><p><bold>The average root-mean-square-error (&#x003A8;) and bias (&#x003A8;) for 14 dominant OC-CCI Optical Water Types (OWT) for total chlorophyll (A,B), diatom chlorophyll <bold>(C,D)</bold>, dinoflagellate chlorophyll <bold>(E,F)</bold>, nanoplankton chlorophyll <bold>(G,H)</bold>, and picoplankton chlorophyll <bold>(I,J)</bold></bold>. <italic>N</italic> (violet lines and squares) shows the number of observations of each dominant OWT. Plots <bold>(C&#x02013;J)</bold> are for the SST-dependent parameterization (Equations 12&#x02013;15) together with estimates of <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> (Equation 16).</p></caption>
<graphic xlink:href="fmars-04-00104-g0011.tif"/>
</fig>
<p>Consistent with satellite estimates of total chlorophyll, there is a tendency for &#x003A8; to increase from lower to higher OWTs for all the phytoplankton groups (Table <xref ref-type="table" rid="T5">5</xref>, Figures <xref ref-type="fig" rid="F11">11C,E,G,I</xref>), particularly for smaller cells (pico and nano-plankton) and for dinoflagellates. This is likely due to: i) the satellite estimates of total chlorophyll, which are used as input to the phytoplankton group model, having larger errors at higher OWTs (Figure <xref ref-type="fig" rid="F11">11A</xref>); and ii) possible deviations in the relationships between the phytoplankton groups and total chlorophyll in optically complex waters, when compared with typical open-ocean conditions. With the exception of diatoms, there is a slight tendency for the models to overestimate chlorophyll for the phytoplankton groups at higher OWTs (e.g., 8&#x02013;14), as indexed by a positive bias (Table <xref ref-type="table" rid="T5">5</xref>, Figures <xref ref-type="fig" rid="F11">11F,H,J</xref>).</p>
</sec>
<sec>
<title>3.3. Application of the model to a satellite image</title>
<p>Figure <xref ref-type="fig" rid="F12">12</xref> illustrates the application of the phytoplankton group model (SST-dependent parameterization; Equations 10&#x02013;15) to satellite chlorophyll (OC-CCI) and SST (NOAA OISST) composites for the period 17th to 24th June 2008. Satellite products used as inputs to the model &#x02013; chlorophyll (Figure <xref ref-type="fig" rid="F12">12A</xref>), OWT membership (plotted by dominance (highest membership) in Figure <xref ref-type="fig" rid="F12">12B</xref>) and SST (Figure <xref ref-type="fig" rid="F12">12C</xref>)&#x02014;highlight the different biogeochemical areas in the region, with oligotrophic waters to the south (high SST, low total chlorophyll, low OWT), more productive waters to the north (lower SST, higher chlorophyll and OWT), and very productive coastal waters (variable SST, high chlorophyll and OWT). Figures <xref ref-type="fig" rid="F12">12D,G,J,M</xref>, show estimates of chlorophyll for the four phytoplankton groups, diatoms (<italic>C</italic><sub><italic>diat</italic></sub>), dinoflagellates (<italic>C</italic><sub><italic>dino</italic></sub>), nanoplankton (<italic>C</italic><sub><italic>n</italic></sub>) and picoplankton (<italic>C</italic><sub><italic>p</italic></sub>), respectively. Picoplankton (<italic>C</italic><sub><italic>p</italic></sub>) are the dominant group in the warm oligotrophic waters, nanoplankton (<italic>C</italic><sub><italic>n</italic></sub>) in intermediate (mesotrophic waters), and diatoms (<italic>C</italic><sub><italic>diat</italic></sub>) in the northern productive waters and coastal regions (eutrophic waters). Dinoflagellates rarely dominate (i.e., rarely have the highest chlorophyll of the four groups), but typically have higher concentrations in coastal regions.</p>
<fig id="F12" position="float">
<label>Figure 12</label>
<caption><p><bold>Satellite estimates of phytoplankton group chlorophyll and per-pixel errors for an 8 day (relatively clear sky) composite (17th to 24th June 2008) of OC-CCI chlorophyll (a), (dominant) optical water type <bold>(b)</bold> and SST (NOAA OISST) data <bold>(c)</bold></bold>. Example shown is using the SST-dependent parameterization (Equations 12&#x02013;15) together with estimates of <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> (Equation 16): <bold>(d)</bold> Diatom chlorophyll (<italic>C</italic><sub><italic>diat</italic></sub>); <bold>(e)</bold> per-pixel root-mean-square-error (&#x003A8;) of <italic>C</italic><sub><italic>diat</italic></sub>; <bold>(f)</bold> per-pixel bias (&#x003B4;) of <italic>C</italic><sub><italic>diat</italic></sub>; <bold>(g)</bold> dinoflagellate chlorophyll (<italic>C</italic><sub><italic>dino</italic></sub>); <bold>(h)</bold> &#x003A8; of <italic>C</italic><sub><italic>dino</italic></sub>; <bold>(i)</bold> &#x003B4; of <italic>C</italic><sub><italic>dino</italic></sub>; <bold>(J)</bold> nanoplankton chlorophyll (<italic>C</italic><sub><italic>n</italic></sub>); <bold>(k)</bold> &#x003A8; of <italic>C</italic><sub><italic>n</italic></sub>; <bold>(l)</bold> &#x003B4; of <italic>C</italic><sub><italic>n</italic></sub>; <bold>(m)</bold> picoplankton chlorophyll (<italic>C</italic><sub><italic>p</italic></sub>); <bold>(n)</bold> &#x003A8; of <italic>C</italic><sub><italic>p</italic></sub>; and <bold>(o)</bold> &#x003B4; of <italic>C</italic><sub><italic>p</italic></sub>.</p></caption>
<graphic xlink:href="fmars-04-00104-g0012.tif"/>
</fig>
<p>In addition to the concentrations, per-pixel uncertainties (&#x003A8; and &#x003B4;) are plotted for each phytoplankton group (Figure <xref ref-type="fig" rid="F12">12</xref>), through application of Equation (17) on a per-pixel basis, using per-pixel OWT membership provided by the OC-CCI products and statistics from Table <xref ref-type="table" rid="T5">5</xref>. In general, lower &#x003A8; is observed in the oligotrophic waters to the south of the region, with &#x003A8; increasing toward more productive waters. Dinoflagellates have the highest &#x003A8; in these productive waters, reflecting higher uncertainty in deriving the concentrations of this phytoplankton group (see also Figure <xref ref-type="fig" rid="F10">10</xref>). Lower &#x003A8; are seen for nano- and picoplankton, when compared with the larger size classes. Diatoms display a less variable &#x003A8; throughout the entire region, when compared with the other three phytoplankton groups.</p>
<p>Biases (&#x003B4;) are close to zero for all phytoplankton groups in the warm oligotrophic waters (Figure <xref ref-type="fig" rid="F12">12</xref>), with positive biases seen for dinoflagellates, nanoplankton and picoplankton in the more productive waters, implying a slight overestimation in chlorophyll by the satellite model in these waters. These biases can be caused by two reasons: (i) biases in model input (total chlorophyll); and (ii) biases in model parameters used for partitioning total chlorophyll into the phytoplankton groups. There were no major biases (with the exception of OWT14) in total chlorophyll (model input) in the validation dataset (Figure <xref ref-type="fig" rid="F11">11B</xref>). Nonetheless, it is likely that the use of alternative input chlorophyll algorithms (e.g., a semi-analytical algorithm) will impact these biases. The positive biases seen for dinoflagellates, nanoplankton and picoplankton in the more productive waters are likely caused by biases in model parameters at higher OWTs. In the future, with a larger database, modifications to model parameters according to OWT could be feasible, and would likely reduce observed biases.</p>
<p>As well as varying within the region as illustrated in Figure <xref ref-type="fig" rid="F12">12</xref>, temporal variations in chlorophyll concentration and associated per-pixel errors can be captured by application of the model to satellite data over the course of the seasons.</p>
</sec>
<sec>
<title>3.4. Potential caveats in the approach</title>
<sec>
<title>3.4.1. <italic>In situ</italic> estimates of phytoplankton group chlorophyll</title>
<p>The performance of a model is tightly related to the quality of data used to tune it. We used estimates of phytoplankton group chlorophyll principally from HPLC. Whereas recent refinements in the use of HPLC to infer size-fractionated chlorophyll (Uitz et al., <xref ref-type="bibr" rid="B117">2006</xref>; Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>; Devred et al., <xref ref-type="bibr" rid="B39">2011</xref>; Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>) were used, diagnostic pigments determined by HPLC can be found in a variety of phytoplankton taxa and size classes, such that its use as a single <italic>in situ</italic> method may not always be dependable (Nair et al., <xref ref-type="bibr" rid="B85">2008</xref>). Therefore, we combined data on size-fractionated chlorophyll estimated from HPLC with those from SFF, which encouragingly, were found to be in reasonable agreement with each other for surface waters in the North Atlantic region (Figure <xref ref-type="fig" rid="F2">2</xref>). Yet, biases between the two techniques have been observed in Atlantic waters (Brewin et al., <xref ref-type="bibr" rid="B18">2014a</xref>). Uncertainties in the SFF technique can arise from filter clogging, inaccurate pore sizes and cell breakage. The partitioning of microplankton chlorophyll into diatoms and dinoflagellates was based on the assumption that fucoxanthin in microphytoplankton can be attributed to diatoms and peridinin to dinoflagellates (Equations 8 and 9). Yet, there can also be fucoxanthin-containing dinoflagellates (e.g., <italic>Kryptoperidinium foliaceum</italic>) in Atlantic waters (Kempton et al., <xref ref-type="bibr" rid="B57">2002</xref>), though there occurrence is generally not well known. Greater efforts to combine other sources of <italic>in situ</italic> data (e.g., flow cytometry, video imagery, optical measurements and microscopy) should help improve, and quantify uncertainty in, estimates of phytoplankton group chlorophyll <italic>in situ</italic> and ultimately, the parameterization of satellite models.</p>
</sec>
<sec>
<title>3.4.2. The satellite phytoplankton group model</title>
<p>The conceptual framework of the Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>) model has been supported by data from: phytoplankton spectral absorption measurements (Brewin et al., <xref ref-type="bibr" rid="B13">2011a</xref>); spectral particle backscattering measurements (Brewin et al., <xref ref-type="bibr" rid="B12">2012a</xref>); chlorophyll estimated by size-fractionated filtration (Raimbault et al., <xref ref-type="bibr" rid="B92">1988</xref>; Chisholm, <xref ref-type="bibr" rid="B28">1992</xref>; Riegman et al., <xref ref-type="bibr" rid="B96">1993</xref>; Gin et al., <xref ref-type="bibr" rid="B47">2000</xref>; Mara&#x000F1;&#x000F3;n et al., <xref ref-type="bibr" rid="B71">2012</xref>; Brewin et al., <xref ref-type="bibr" rid="B18">2014a</xref>; Ward, <xref ref-type="bibr" rid="B121">2015</xref>); flow cytometry and microscopy (Brotas et al., <xref ref-type="bibr" rid="B24">2013</xref>). The model has also been found to reproduce inter-annual variations in size structure consistent with theories on coupling between physical-chemical processes and ecosystem structure (Brewin et al., <xref ref-type="bibr" rid="B15">2012b</xref>), and found to reproduce the typical normalized-biomass size-spectrum of phytoplankton (Brewin et al., <xref ref-type="bibr" rid="B19">2014b</xref>). The model has captured relationships between size structure and total chlorophyll in a variety of contrasting regions (e.g., Lin et al., <xref ref-type="bibr" rid="B67">2014</xref>; Brito et al., <xref ref-type="bibr" rid="B23">2015</xref>; Sammartino et al., <xref ref-type="bibr" rid="B100">2015</xref>).</p>
<p>Yet, as with any abundance-based method, the model does not directly detect the phytoplankton groups: it simply infers the concentrations of chlorophyll in each group based on relationships, developed using data collected in the past, with properties that can by derived accurately from space (e.g., chlorophyll concentration and sea surface temperature). The model is not expected to capture blooms that deviate from the general trends observed in the parameterization dataset (Figures <xref ref-type="fig" rid="F4">4</xref>,<xref ref-type="fig" rid="F5">5</xref>). For this reason, such techniques may not be appropriate for certain applications. For instance, under a climate-change scenario, there is the possibility that the relationships between properties (e.g., total chlorophyll and group-specific chlorophyll) may change, which may not be detected using an abundance-based approach (Sathyendranath et al., submitted). For such applications, spectral-based methods are likely to be preferable.</p>
<p>Two versions of the re-tuned Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>) model were carried forward in this study: one using a fixed set of parameters (Table <xref ref-type="table" rid="T3">3</xref>); and the other where the parameters were tied with SST (Table <xref ref-type="table" rid="T4">4</xref>). The Brewin et al. (<xref ref-type="bibr" rid="B16">2010</xref>) model with a fixed parameter set has an advantage that only four parameters are required to compute the size fractions (Table <xref ref-type="table" rid="T3">3</xref>), compared with 16 that are used in the SST-dependent model (Table <xref ref-type="table" rid="T4">4</xref>). A larger dataset is required to tune the SST-dependent model for regional applications, when compared with the model with a fixed parameter set. Furthermore, when considering all samples together, only a slight improvement in model performance (&#x003A8; and &#x003B4;) was achieved when using the SST-dependent model (Figures <xref ref-type="fig" rid="F7">7</xref>, <xref ref-type="fig" rid="F9">9</xref>). Yet, the SST-dependent model captured variations in model parameters, such as the asymptotic maximum values for small cells (<inline-formula><mml:math id="M50"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula> and <inline-formula><mml:math id="M51"><mml:msubsup><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>p</mml:mi></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:msubsup></mml:math></inline-formula>), that are known to vary with changes in bottom-up (e.g., nutrients and light) and top-down (grazing) processes (Riegman et al., <xref ref-type="bibr" rid="B96">1993</xref>; Brewin et al., <xref ref-type="bibr" rid="B19">2014b</xref>). The fixed parameter model simply failed to capture these variations, resulting in unrealistic static asymptotes (Figures <xref ref-type="fig" rid="F7">7</xref>, <xref ref-type="fig" rid="F9">9</xref> top-row, horizontal purple dashed lines).</p>
<p>Variations in the relationships of size structure with total chlorophyll and with SST were generally consistent with those proposed by Ward (<xref ref-type="bibr" rid="B121">2015</xref>), with the fractions of larger cells (e.g., microplankton) generally increasing with decreasing SST, for concentrations of total chlorophyll less than 1 mg m<sup>&#x02212;3</sup>, and the fractions of small cells (picoplankton) increasing (Figure <xref ref-type="fig" rid="F6">6</xref>). Yet, in the Ward (<xref ref-type="bibr" rid="B121">2015</xref>) study these variations were typically observed at lower temperature (&#x0003C; 5&#x000B0;C) than those shown in this study (&#x0003C; 17&#x000B0;C). Results are also relatively consistent for small cells (picoplankton) with those proposed by Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>), when using average light in the mixed-layer, rather than SST, to vary model parameters, though differ for microplankton (see Figures 4, 5 of Brewin et al., <xref ref-type="bibr" rid="B17">2015</xref>). Differences between studies are possibly due to the regional-tuning of the model when compared with the global studies of Ward (<xref ref-type="bibr" rid="B121">2015</xref>) and Brewin et al. (<xref ref-type="bibr" rid="B17">2015</xref>). There are also differences in the two approaches: whereas Ward (<xref ref-type="bibr" rid="B121">2015</xref>) introduces an additional term to the three-component model to account for temperature dependence, here we have let the model parameters change in response to SST variation.</p>
<p>Motivated by the need to provide satellite products of phytoplankton groups that match those as defined in ecosystem models, particularly ERSEM (Table <xref ref-type="table" rid="T2">2</xref>), we proposed a partitioning of microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>) into diatoms (<italic>C</italic><sub><italic>diat</italic></sub>) and dinoflagellates (<italic>C</italic><sub><italic>dino</italic></sub>), by modeling the ratio of <italic>C</italic><sub><italic>dino</italic></sub> to <italic>C</italic><sub><italic>m</italic></sub> as a function of SST (Figure <xref ref-type="fig" rid="F8">8A</xref>). This differs to that proposed by Hirata et al. (<xref ref-type="bibr" rid="B51">2011</xref>) which is based solely on total chlorophyll. We observed a significant relationship between <italic>C</italic><sub><italic>dino</italic></sub>/<italic>C</italic><sub><italic>m</italic></sub> and SST that was consistent with known seasonal variations of the two phytoplankton groups in the region (McQuatters-Gollop et al., <xref ref-type="bibr" rid="B76">2007</xref>; Widdicombe et al., <xref ref-type="bibr" rid="B128">2010</xref>). Yet, there still are significant variations surrounding this relationship (Figure <xref ref-type="fig" rid="F8">8A</xref>), and <italic>C</italic><sub><italic>dino</italic></sub> was found to have the highest errors in the satellite model (Figures <xref ref-type="fig" rid="F11">11</xref>, <xref ref-type="fig" rid="F12">12</xref>). The approach may fail to capture blooms of microplankton chlorophyll (<italic>C</italic><sub><italic>m</italic></sub>) entirely dominated by dinoflagellates (Figure <xref ref-type="fig" rid="F8">8A</xref>), that can occur in the region (Widdicombe et al., <xref ref-type="bibr" rid="B128">2010</xref>). Future improvements in <italic>C</italic><sub><italic>dino</italic></sub> satellite estimates may be possible by incorporating spectral information (Shang et al., <xref ref-type="bibr" rid="B105">2014</xref>) or other environmental data (Raitsos et al., <xref ref-type="bibr" rid="B93">2008</xref>). Such improvements may significantly aid ecosystem models considering the difficulties in modeling this group due to their motility and complex trophic behavior (Ciavatta et al., <xref ref-type="bibr" rid="B31">2011</xref>).</p>
</sec>
<sec>
<title>3.4.3. Per-pixel uncertainties</title>
<p>In-line with methods used in the OC-CCI project (Jackson and Sathyendranath, <xref ref-type="bibr" rid="B56">2015</xref>), our satellite estimates of the chlorophyll concentration of each phytoplankton group come with per-pixel uncertainty (Figure <xref ref-type="fig" rid="F12">12</xref>), an essential requirement for use in many applications, such as ecosystem model validation, data assimilation and quantifying evidence of trends in a time-series. Yet, estimates of uncertainty we provide are based on the assumption that the <italic>in situ</italic> data is the truth. As discussed in the previous section, <italic>in situ</italic> measurements of phytoplankton group chlorophyll also have their uncertainties, which are difficult to quantify (Brewin et al., <xref ref-type="bibr" rid="B18">2014a</xref>). In addition, the estimates of uncertainty are based on comparisons of co-incident discrete <italic>in situ</italic> point measurements, representing volumes of sea water of the order of 5 litres or less, with 4 km satellite pixels representing a signal from &#x0007E;16 &#x000D7; 10<sup>10</sup> litres of water, assuming a 10 m optical depth. Additional uncertainties can occur because of vast differences in the temporal scales associated with the two types of measurements. In the future, such uncertainties may be reduced with the aid of new <italic>in situ</italic> methods capable of continuously measuring the optical and biogeochemical properties of the water (Dall&#x00027;Olmo et al., <xref ref-type="bibr" rid="B33">2012</xref>; Boss et al., <xref ref-type="bibr" rid="B9">2013</xref>; Chase et al., <xref ref-type="bibr" rid="B27">2013</xref>; Werdell et al., <xref ref-type="bibr" rid="B126">2013b</xref>; Brewin et al., <xref ref-type="bibr" rid="B11">2016</xref>).</p>
<p>By computing uncertainty statistics for each OWT, we can overcome issues with the distribution of data used in the validation. For instance, in our validation dataset, the majority of samples came from three OWTs (10, 11, and 12, see Figure <xref ref-type="fig" rid="F11">11</xref>), yet in the satellite image (Figure <xref ref-type="fig" rid="F12">12B</xref>), the majority of the region is dominated by OWTs less than 10. If one were to consider a single value of any statistical metric (as provided in Figures <xref ref-type="fig" rid="F9">9</xref>, <xref ref-type="fig" rid="F10">10</xref>) as representative of the uncertainty in the entire satellite data, it would not be well representative of the majority of the region. Yet, as the number of samples in each OWT vary, so does our confidence in the error statistics for each OWT. Some OWTs (e.g., 1, 2, and 14) have very few observations (Table <xref ref-type="table" rid="T5">5</xref>), and consequently we have low confidence in the uncertainty estimates for these OWTs.</p>
</sec>
</sec>
</sec>
<sec id="s4">
<title>4. Summary</title>
<p>We re-tuned an abundance-based model (Brewin et al., <xref ref-type="bibr" rid="B16">2010</xref>, <xref ref-type="bibr" rid="B17">2015</xref>) for estimating the chlorophyll concentration of three phytoplankton size classes as a function of total chlorophyll (available from satellite data) in the North Atlantic region using a large dataset of size-fractionated chlorophyll measurements. The model was modified to account for the influence of sea surface temperature (SST, also available from satellite data) on model parameters, and on the partitioning of chlorophyll in large phytoplankton (microphytoplankton) into diatoms and dinoflagellates, so that the phytoplankton groups provided matched those used in a marine ecosystem model (ERSEM). Results indicate that in the North Atlantic: (i) the relationship between size-fractionated chlorophyll and total chlorophyll changes with the environmental conditions (SST); and (ii) the ratio of dinoflagellate chlorophyll to microplankton chlorophyll increases with SST.</p>
<p>Application of the method to satellite estimates of total chlorophyll and SST was validated using an independent dataset of satellite and <italic>in situ</italic> match-ups. This dataset was used with information on the optical water type, based on fuzzy-logic statistics developed within the ESA OC-CCI project, to derive uncertainties in 14 different optical water types, which were then used to map uncertainties in chlorophyll on a per-pixel basis for each phytoplankton group in a satellite image. These satellite products will be useful for those evaluating the performance of the ERSEM model and assimilating chlorophyll for each phytoplankton group into ERSEM in research and operational applications. Such an approach could be extended to other ecosystem models that simulate phytoplankton functional groups in the oceans.</p>
</sec>
<sec id="s5">
<title>Author contributions</title>
<p>RB synthesized the data, re-tuned and further-developed the algorithm, organized, prepared and wrote the first version of the manuscript, and prepared all figures and tables. SC, SS, TJ, EO, GD, and DR contributed to the intellectual development of the algorithms, and GT, KC, RA, DC, and VB collected and processed parts of the datasets used in the paper. All authors contributed to the final version of the manuscript.</p>
</sec>
<sec id="s6">
<title>Funding</title>
<p>This work has been carried out as part of the Copernicus Marine Environment Monitoring Service (CMEMS) project &#x0201C;Toward Operational Size-class Chlorophyll Assimilation (TOSCA).&#x0201D; CMEMS is implemented by MERCATOR OCEAN in the framework of a delegation agreement with the European Union. This work was also supported by the UK National Centre for Earth Observation (NCEO). Additional support from the Ocean Colour Component of the Climate Change Initiative of the European Space Agency (ESA) is gratefully acknowledged. Data collection by GT was supported by NERC-UK ECOMAR (grant no: NE/C513018/1). We thank ESA for covering publication costs.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack><p>The authors would like to acknowledge all scientists and crew involved in the collection of the <italic>in situ</italic> data used in this manuscript, without which this work would not have been feasible. We owe a debit of gratitude to all those involved in data collection. AMT data were funded through the UK Natural Environment Research Council, through the UK marine research institutes&#x00027; strategic research programme Oceans 2025 awarded to PML and the National Oceanography Centre. The authors would like to thank European Space Agency (ESA) for CCI data used, NOAA for the OISST products, and NASA for MODIS-Aqua and SeaWiFS products used. This is a contribution to MARE - UID/MAR/04292/2013, the Ocean Colour Climate Change Initiative of ESA and contribution number 311 of the AMT programme.</p>
</ack>
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