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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2016.00180</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Evaluating the Impact of Atmospheric Depositions on Springtime Dinitrogen Fixation in the Cretan Sea (Eastern Mediterranean)&#x02014;A Mesocosm Approach</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Rahav</surname> <given-names>Eyal</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/98751/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Shun-Yan</surname> <given-names>Cheung</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Cui</surname> <given-names>Guo</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Liu</surname> <given-names>Hongbin</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/135322/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Tsagaraki</surname> <given-names>Tatiana M.</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Giannakourou</surname> <given-names>Antonia</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/349401/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Tsiola</surname> <given-names>Anastasia</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/343888/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Psarra</surname> <given-names>Stella</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/349360/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Lagaria</surname> <given-names>Anna</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/344060/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Mulholland</surname> <given-names>Margaret R.</given-names></name>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/101304/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Stathopoulou</surname> <given-names>Eleni</given-names></name>
<xref ref-type="aff" rid="aff7"><sup>7</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Paraskevi</surname> <given-names>Pitta</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/130856/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Herut</surname> <given-names>Barak</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/105509/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Berman-Frank</surname> <given-names>Ilana</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/204937/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Israel Oceanographic and Limnological Research, National Institute of Oceanography</institution> <country>Haifa, Israel</country></aff>
<aff id="aff2"><sup>2</sup><institution>Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University</institution> <country>Ramat-Gan, Israel</country></aff>
<aff id="aff3"><sup>3</sup><institution>Division of Life Science, Hong Kong University of Science and Technology</institution> <country>Hong Kong, Hong Kong</country></aff>
<aff id="aff4"><sup>4</sup><institution>Department of Microbiology, University of Bergen</institution> <country>Bergen, Norway</country></aff>
<aff id="aff5"><sup>5</sup><institution>Hellenic Centre for Marine Research</institution> <country>Heraklion, Greece</country></aff>
<aff id="aff6"><sup>6</sup><institution>Department of Ocean, Earth and Atmospheric Sciences, Old Dominion University</institution> <country>Norfolk, VA, USA</country></aff>
<aff id="aff7"><sup>7</sup><institution>Laboratory of Environmental Chemistry, Department of Chemistry, University of Athens</institution> <country>Athens, Greece</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Alberto Basset, University of Salento, Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Robinson W. (Wally) Fulweiler, Boston University, USA; Patrick Georges Gillet, UCO Angers, France</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Eyal Rahav <email>eyal.rahav&#x00040;ocean.org.il</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Marine Ecosystem Ecology, a section of the journal Frontiers in Marine Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>23</day>
<month>09</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection">
<year>2016</year>
</pub-date>
<volume>3</volume>
<elocation-id>180</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>05</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>06</day>
<month>09</month>
<year>2016</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2016 Rahav, Shun-Yan, Cui, Liu, Tsagaraki, Giannakourou, Tsiola, Psarra, Lagaria, Mulholland, Stathopoulou, Paraskevi, Herut and Berman-Frank.</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>Rahav, Shun-Yan, Cui, Liu, Tsagaraki, Giannakourou, Tsiola, Psarra, Lagaria, Mulholland, Stathopoulou, Paraskevi, Herut and Berman-Frank</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>Large amounts of dust and atmospheric aerosols, originating from surrounding desert areas (e.g., Sahara and Middle East) are deposited annually on the surface of the Eastern Mediterranean Sea. These depositions can provide high amounts of micro (such as Fe, Zn, Co) and macro nutrients (such as P and N) to supplement nutrient-poor surface waters- that typically limit primary productivity and also dinitrogen (N<sub>2</sub>) fixation in many marine environments. Here, we studied the impact of the atmospheric deposition of dust and aerosols on N<sub>2</sub> fixation in the Cretan Sea (Eastern Mediterranean Sea). Mixed polluted aerosols (hereafter A) and Saharan dust (hereafter SD) were added to nine mesocosms (3-m<sup>3</sup> each) containing surface mixed layer seawater (&#x0007E;10 m), and N<sub>2</sub> fixation was evaluated for 6 days during May 2012 (springtime). The addition of SD triggered a rapid (30 h) and robust (2&#x02013;4-fold) increase in N<sub>2</sub> fixation rates that remained high for 6 days and contributed 3&#x02013;8% of the primary productivity. The A addition also resulted in higher N<sub>2</sub> fixation rates compared to the unamended control mesocosms, although the responses were less profound (1.5&#x02013;2-fold) and accounted for only 2&#x02013;4% of the primary productivity. The microbial community responded differently to the two additions. Heterotrophic bacterial N<sub>2</sub> fixers dominated the diazotroph community in A and the control mesocosms, while the non-filamentous cyanobacterial group <italic>Trichodesmium</italic> prevailed in the SD treatment (68% of all the operational taxonomic units, verified by qPCR analyses). Our results indicate that the aerosol source, its route prior to deposition, and its specific chemical composition, can alter the diazotrophic diversity and activity in the Eastern Mediterranean Sea and may thus impact both the N and C dynamics in this impoverished environment.</p></abstract>
<kwd-group>
<kwd>N<sub>2</sub> fixation</kwd>
<kwd>primary productivity</kwd>
<kwd>bacterial productivity</kwd>
<kwd>Saharan dust</kwd>
<kwd>aerosols</kwd>
</kwd-group>
<counts>
<fig-count count="5"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="93"/>
<page-count count="13"/>
<word-count count="10227"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Dinitrogen (N<sub>2</sub>) fixation is recognized as an important pathway for bioavailable nitrogen inputs in many of the world&#x00027;s oceans (Gruber and Galloway, <xref ref-type="bibr" rid="B24">2008</xref>; Sohm et al., <xref ref-type="bibr" rid="B76">2011</xref>). This process can alter phytoplankton populations and primary production in nitrogen (N) limited marine environments (e.g., Falkowski, <xref ref-type="bibr" rid="B17">1997</xref>; Carpenter et al., <xref ref-type="bibr" rid="B12">2004</xref>; Sohm et al., <xref ref-type="bibr" rid="B76">2011</xref>) and thus fuels the biological pump. Many physical, chemical, and biological factors can affect the magnitude of N<sub>2</sub> fixation in a given ecosystem. Where N<sub>2</sub> fixers (diazotrophs) occur, they are most often limited by phosphorus (P) (Wu et al., <xref ref-type="bibr" rid="B88">2000</xref>; Sanudo-Wilhelmy et al., <xref ref-type="bibr" rid="B72">2001</xref>; Dyhrman and Haley, <xref ref-type="bibr" rid="B16">2006</xref>), iron (Fe) (Paerl et al., <xref ref-type="bibr" rid="B51">1987</xref>; Berman-Frank et al., <xref ref-type="bibr" rid="B2">2001</xref>, <xref ref-type="bibr" rid="B3">2007</xref>; Moore et al., <xref ref-type="bibr" rid="B47">2009</xref>), or both (Mills et al., <xref ref-type="bibr" rid="B44">2004</xref>).</p>
<p>Wet and dry deposition of atmospheric dust can increase the availability of Fe and P in the surface ocean (Herut et al., <xref ref-type="bibr" rid="B29">1999</xref>, <xref ref-type="bibr" rid="B30">2005</xref>; Bonnet and Guieu, <xref ref-type="bibr" rid="B7">2006</xref>; Guieu et al., <xref ref-type="bibr" rid="B27">2014</xref>) thereby supplementing the requirements of primary producers (mostly N and P, Zohary et al., <xref ref-type="bibr" rid="B93">2005</xref>; Rahav et al., <xref ref-type="bibr" rid="B57">2016a</xref>; Tsiola et al., <xref ref-type="bibr" rid="B82">2016</xref>) and N<sub>2</sub>-fixers (Gruber and Sarmiento, <xref ref-type="bibr" rid="B25">1997</xref>; Mills et al., <xref ref-type="bibr" rid="B44">2004</xref>; Mara&#x000F1;&#x000F3;n et al., <xref ref-type="bibr" rid="B41">2010</xref>). Dust enrichment enhanced N<sub>2</sub> fixation rates in microcosm experiments from the tropical Atlantic (Mills et al., <xref ref-type="bibr" rid="B44">2004</xref>; Mara&#x000F1;&#x000F3;n et al., <xref ref-type="bibr" rid="B41">2010</xref>), the North Atlantic (Gruber and Sarmiento, <xref ref-type="bibr" rid="B25">1997</xref>), the Red Sea (Foster et al., <xref ref-type="bibr" rid="B21">2009</xref>), and the tropical and subtropical western North Pacific (Kitajima et al., <xref ref-type="bibr" rid="B36">2009</xref>). Furthermore, a 100-fold increase in the abundance of <italic>Trichodesmium</italic>, a non-filamentous cyanobacterial diazotroph, and a &#x0007E;2-fold increase in dissolved organic nitrogen were reported following dust stimulation in the West Florida Shelf (Lenes et al., <xref ref-type="bibr" rid="B38">2001</xref>). However, N<sub>2</sub> fixation rates and high abundances of diazotrophs are not always observed in areas of the ocean where dust deposition is high. For example, the oligotrophic Mediterranean Sea receives high annual inputs of dust (20 &#x000D7; 10<sup>6</sup> to 50 &#x000D7; 10<sup>6</sup> tons y<sup>&#x02212;1</sup>, Guerzoni et al., <xref ref-type="bibr" rid="B26">1999</xref>) characterized by relatively high dissolved Fe concentrations (&#x0007E;42 &#x003BC;mol m<sup>&#x02212;2</sup> y<sup>&#x02212;1</sup>, Bonnet and Guieu, <xref ref-type="bibr" rid="B7">2006</xref>). Yet N<sub>2</sub> fixation rates are typically low in surface waters and the upper mixed layer (usually &#x0003C; 0.2 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>, Sandroni et al., <xref ref-type="bibr" rid="B71">2007</xref>; Ibello et al., <xref ref-type="bibr" rid="B32">2010</xref>; Bonnet et al., <xref ref-type="bibr" rid="B6">2011</xref>; Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>; Benavides et al., <xref ref-type="bibr" rid="B1">2016</xref>) relative to other marine systems (reviewed in Sohm et al., <xref ref-type="bibr" rid="B76">2011</xref>).</p>
<p>Several studies have examined the possibility of low P availability limiting diazotrophy in the Mediterranean Sea but results have been inconclusive (see literature compilation in Table <xref ref-type="table" rid="T1">1</xref>). While N<sub>2</sub> fixation was enhanced by &#x0007E;50% after the addition of P to surface waters in an ultraoligotrophic, P-limited anticyclonic eddy in the Eastern Mediterranean Sea during the summer of 2002 (Rees et al., <xref ref-type="bibr" rid="B65">2006</xref>), no significant increases in N<sub>2</sub> fixation rates were observed several years later during an identical experiment at the same location and for the same incubation period (24 h) (Ridame et al., <xref ref-type="bibr" rid="B68">2011</xref>). Similarly, N<sub>2</sub> fixation rates were not enhanced by P additions in the Levantine Basin (Eastern Mediterranean) during the summer of 2009, including within the cores of cyclonic and anticyclonic eddies (Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p><bold>Summary of the microcosm/mesocosm experiments performed in the Mediterranean Sea aimed studying the limiting nutrients for diazotrophy</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Location</bold></th>
<th valign="top" align="left"><bold>Water type</bold></th>
<th valign="top" align="left"><bold>Type of addition</bold></th>
<th valign="top" align="left"><bold>Sampling depth</bold></th>
<th valign="top" align="left"><bold>Maximal change in N<sub>2</sub> fixation rates (% from control)</bold></th>
<th valign="top" align="left"><bold>Reference</bold></th>
<th valign="top" align="left"><bold>Comments</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Levantine Basin</td>
<td valign="top" align="left">Anticyclonic eddy</td>
<td valign="top" align="left">P (&#x0007E;100 nM)</td>
<td valign="top" align="left">Surface (16 m)</td>
<td valign="top" align="left">&#x0002B;50</td>
<td valign="top" align="left">Rees et al., <xref ref-type="bibr" rid="B65">2006</xref></td>
<td/>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td/>
<td valign="top" align="left">Fe (6 nM)</td>
<td/>
<td valign="top" align="left">No change</td>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Western Basin</td>
<td valign="top" align="left">Anticyclonic eddy</td>
<td valign="top" align="left">P (30 nM)</td>
<td valign="top" align="left">Surface (8 m)</td>
<td valign="top" align="left">&#x0002B;200</td>
<td valign="top" align="left">Ridame et al., <xref ref-type="bibr" rid="B68">2011</xref></td>
<td valign="top" align="left">Station A</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">P (30 nM)&#x0002B; Fe (2 nM)</td>
<td/>
<td valign="top" align="left">&#x0002B;400</td>
<td/>
<td/>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td/>
<td valign="top" align="left">Dust (1.1 mg L<sup>&#x02212;1</sup>)</td>
<td/>
<td valign="top" align="left">&#x0002B;130</td>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Ionian Sea</td>
<td valign="top" align="left">Anticyclonic eddy</td>
<td valign="top" align="left">P (30 nM)</td>
<td valign="top" align="left">Surface (8 m)</td>
<td valign="top" align="left">No change</td>
<td valign="top" align="left">Ridame et al., <xref ref-type="bibr" rid="B68">2011</xref></td>
<td valign="top" align="left">Station B</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">P (30 nM)&#x0002B; Fe (2 nM)</td>
<td/>
<td valign="top" align="left">No change</td>
<td/>
<td/>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td/>
<td valign="top" align="left">Dust (1.1 mg L<sup>&#x02212;1</sup>)</td>
<td/>
<td valign="top" align="left">&#x0002B;210</td>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Levantine Basin</td>
<td valign="top" align="left">Anticyclonic eddy</td>
<td valign="top" align="left">P (30 nM)</td>
<td valign="top" align="left">Surface (8 m)</td>
<td valign="top" align="left">&#x0002B;200</td>
<td valign="top" align="left">Ridame et al., <xref ref-type="bibr" rid="B68">2011</xref></td>
<td valign="top" align="left">Station C</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">P (30 nM)&#x0002B; Fe (2 nM)</td>
<td/>
<td valign="top" align="left">&#x0002B;150</td>
<td/>
<td/>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td/>
<td valign="top" align="left">Dust (1.1 mg L<sup>&#x02212;1</sup>)</td>
<td/>
<td valign="top" align="left">&#x0002B;430</td>
<td/>
<td/>
</tr> <tr>
<td valign="top" align="left">Levantine Basin</td>
<td valign="top" align="left">Coastal</td>
<td valign="top" align="left">P (100 nM)</td>
<td valign="top" align="left">Surface (&#x0007E;2 m)</td>
<td valign="top" align="left">No change</td>
<td valign="top" align="left">Rahav et al., <xref ref-type="bibr" rid="B57">2016a</xref></td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">N (1600 nM)</td>
<td/>
<td valign="top" align="left">No change</td>
<td/>
<td/>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">C (1000 nM)</td>
<td/>
<td valign="top" align="left">&#x0002B;170</td>
<td/>
<td valign="top" align="left">Monosaccharide</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">NP</td>
<td/>
<td valign="top" align="left">No change</td>
<td/>
<td/>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">CP</td>
<td/>
<td valign="top" align="left">&#x0002B;320</td>
<td/>
<td/>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">CN</td>
<td/>
<td valign="top" align="left">&#x0002B;140</td>
<td/>
<td/>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="left">CNP</td>
<td/>
<td valign="top" align="left">&#x0002B;600</td>
<td/>
<td/>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td/>
<td valign="top" align="left">Xanthan Gum<break/> (300 &#x003BC;gL<sup>&#x02212;1</sup>)</td>
<td/>
<td valign="top" align="left">&#x0002B;1000</td>
<td/>
<td valign="top" align="left">Polysaccharide</td>
</tr> <tr>
<td valign="top" align="left">Levantine Basin</td>
<td valign="top" align="left">Open sea</td>
<td valign="top" align="left">P (100 nM)</td>
<td valign="top" align="left">Surface (5&#x02013;20 m)</td>
<td valign="top" align="left">No change</td>
<td valign="top" align="left">Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref></td>
<td/>
</tr>
<tr>
<td/>
<td valign="top" align="left">Anticyclonic eddy</td>
<td valign="top" align="left">P (100 nM)</td>
<td/>
<td valign="top" align="left">No change</td>
<td/>
<td/>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td/>
<td valign="top" align="left">Cyclonic gyre</td>
<td valign="top" align="left">P (100 nM)</td>
<td/>
<td valign="top" align="left">No change</td>
<td/>
<td/>
</tr> <tr style="border-bottom: thin solid #000000;">
<td valign="top" align="left">Levantine Basin</td>
<td valign="top" align="left">Open sea</td>
<td valign="top" align="left">Xanthan Gum (100&#x02013;4500 &#x003BC;gL<sup>&#x02212;1</sup>)</td>
<td valign="top" align="left">Aphotic water (250 m)</td>
<td valign="top" align="left">&#x0002B;400</td>
<td valign="top" align="left">Rahav et al., <xref ref-type="bibr" rid="B56">2013c</xref></td>
<td/>
</tr> <tr style="border-bottom: thin solid #000000;">
<td valign="top" align="left">Western Basin</td>
<td valign="top" align="left">Coastal</td>
<td valign="top" align="left">Dust (10 g m<sup>&#x02212;2</sup>)</td>
<td valign="top" align="left">Surface (0&#x02013;5 m)</td>
<td valign="top" align="left">&#x0002B;700</td>
<td valign="top" align="left">Ridame et al., <xref ref-type="bibr" rid="B67">2013</xref></td>
<td valign="top" align="left">Mesocosms</td>
</tr> <tr>
<td valign="top" align="left">Cretan Sea</td>
<td valign="top" align="left">Open sea</td>
<td valign="top" align="left">Saharan dust (1.6 mg L<sup>&#x02212;1</sup>)</td>
<td valign="top" align="left">Surface (&#x0007E;10 m)</td>
<td valign="top" align="left">&#x0002B;400</td>
<td valign="top" align="left">This study</td>
<td valign="top" align="left">Mesocosms</td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Mixed polluted aerosol (1 mg L<sup>&#x02212;1</sup>)</td>
<td valign="top" align="left">&#x0002B;200</td>
<td/>
<td/>
</tr>
</tbody>
</table>
</table-wrap>
<p>One possible reason for the variable results from the nutrient amendment experiments above could be the relatively small volumes of the microcosm experiments (each a few liters in total). The ultra-oligotrophic conditions in the study area coupled with the short duration of the experiments (usually less than 48 h) may have been insufficient to detect active diazotrophy. In addition, the low population density may have excluded the representation of the entire microbial food web in the small incubation experiments. In ultraoligotrophic areas such as the Eastern Mediterranean Sea, larger-scale experiments conducted over longer timescales may be required to determine N<sub>2</sub> fixation rates and responses to additions of potentially rate-limiting elements. Mesocosms (52 m<sup>3</sup> bags) were recently employed to examine diazotrophic responses to dust additions in the western Mediterranean Sea (2008, 2010) (Ridame et al., <xref ref-type="bibr" rid="B67">2013</xref>). During this experiment, addition of a dust analog (manipulated top-soils collected from the Sahara desert) induced a rapid (24&#x02013;48 h), robust (2&#x02013;5.3-fold), and lengthy (4&#x02013;6 days duration) increase in N<sub>2</sub> fixation (Table <xref ref-type="table" rid="T1">1</xref>), suggesting that dust inputs may stimulate diazotrophic activity over longer timescales (&#x0003E;48 h) than typical microcosm experiments.</p>
<p>In this study, we employed mesocosms to evaluate the impact of atmospheric deposition on diazotrophy and primary productivity during springtime in the Cretan Sea, an oligotrophic region in the Eastern Mediterranean Sea. Treatments included additions of: (1) &#x0201C;pure&#x0201D; Saharan dust (1.6 mg L<sup>&#x02212;1</sup>), and (2) mixed polluted and desert origin aerosols (1 mg L<sup>&#x02212;1</sup>). Our main objectives were to study how different aerosols affect diazotrophic diversity and N<sub>2</sub> fixation in the oligotrophic Cretan Sea during the spring and study whether these atmospheric inputs can relieve the nutrient limitations for diazotrophs. We hypothesized that the aerosol source and the atmospheric route prior to deposition might trigger different diazotrophic responses that would be reflected in both diversity and activity. Specifically, the two deposition types, and their consequent leached nutrients (N, P and the subsequent N:P ratio), might result in different responses of the diazotrophic community that could subsequently impact the microbial food web in the oligotrophic Cretan Sea.</p>
</sec>
<sec sec-type="materials and methods" id="s2">
<title>Materials and methods</title>
<sec>
<title>Experimental design</title>
<p>Water was collected using a rotary submersible pump from the surface mixed layer (&#x0007E;10 m) on May 9&#x02013;10, 2012, from an area located 5 nautical miles north of Heraklion, Crete (35&#x000B0; 24.957 N, 25&#x000B0; 14.441 E). The collected seawater was brought within &#x0007E;2 h to the Hellenic Centre for Marine Research mesocosm facility (<ext-link ext-link-type="uri" xlink:href="http://www.cretacosmos.eu">www.cretacosmos.eu</ext-link>), where it was homogenously distributed between pre-cleaned (10% HCl) mesocosms (see Figure 1 in Herut et al., this issue, Pitta et al., <xref ref-type="bibr" rid="B52">2016</xref>). Nine 3-m<sup>3</sup> mesocosms were filled and chemical and biological measurements were made to fully characterize the initial properties of the water (Table <xref ref-type="table" rid="T2">2</xref>). The mesocosms were prepared from transparent polyethylene bags and were supported by aluminum frames. The mesocosms were deployed within a continuously circulating seawater 350 m<sup>3</sup> pool to maintain ambient temperature. Each mesocosm was 3 m deep and the seawater inside it was gently mixed using an air pump. Two experimental amendments were made (triplicate mesocosms per treatment): (1) the addition of &#x0201C;pure&#x0201D; Saharan dust (SD), collected from Heraklion and Tel-Shikmona (Haifa, Israel) during Saharan dust events, and (2) the addition of mixed aerosols (A), collected in Crete and Israel, which contained a natural mixture of desert dust and polluted European particles. The leaching nutrient values of the SD and A particles are described in details in Herut et al., (this issue). In short, the SD leached &#x0007E;23.5 nmol N per mg of dust and &#x0007E;2.3 nmol P per mg of dust. The A particles leached &#x0007E;53.0 nmol N per mg of dust and &#x0007E;2.8 nmol P per mg of dust. These leached nutrients resulted in significantly different N:P ratio of &#x0007E;10 (mol:mol) in the SD and &#x0007E;19 (mol:mol) in the A particles. Three mesocosms were used as controls, with no addition. All mesocosms were sampled daily at 08:30 over a 6 days period. For a detailed description of the mesocosms&#x00027; setup and analyses, see Tsagaraki et al. (this issue) and Herut et al. (this issue).</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p><bold>The initial chemical and biological properties of the Cretan Sea sub-surface water during May 9th 2012, before amendments were performed</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Parameter</bold></th>
<th valign="top" align="left"><bold>Units</bold></th>
<th valign="top" align="center"><bold>Average &#x000B1; Stdev</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">NO<sub>2</sub>&#x0002B;NO<sub>3</sub></td>
<td valign="top" align="left">nM</td>
<td valign="top" align="center">132 &#x000B1; 27</td>
</tr>
<tr>
<td valign="top" align="left">NH4</td>
<td valign="top" align="left">nM</td>
<td valign="top" align="center">131 &#x000B1; 60</td>
</tr>
<tr>
<td valign="top" align="left">PO4</td>
<td valign="top" align="left">nM</td>
<td valign="top" align="center">13 &#x000B1; 4</td>
</tr>
<tr>
<td valign="top" align="left">Chlorophyll <italic>a</italic> (Chl<italic>a</italic>)</td>
<td valign="top" align="left">&#x003BC;g L<sup>&#x02212;1</sup></td>
<td valign="top" align="center">0.06 &#x000B1; 0.01</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Synechococcus</italic></td>
<td valign="top" align="left">&#x003BC;g C L<sup>&#x02212;1</sup></td>
<td valign="top" align="center">5.8 &#x000B1; 0.2</td>
</tr>
<tr>
<td valign="top" align="left">Pico-eukaryotes</td>
<td valign="top" align="left">&#x003BC;g C L<sup>&#x02212;1</sup></td>
<td valign="top" align="center">0.6 &#x000B1; 0</td>
</tr>
<tr>
<td valign="top" align="left">Heterotrophic bacteria</td>
<td valign="top" align="left">&#x003BC;g C L<sup>&#x02212;1</sup></td>
<td valign="top" align="center">8.5 &#x000B1; 0.2</td>
</tr>
<tr>
<td valign="top" align="left">Primary productivity (PP)</td>
<td valign="top" align="left">ng C L<sup>&#x02212;1</sup> h<sup>&#x02212;1</sup></td>
<td valign="top" align="center">393 &#x000B1; 46</td>
</tr>
<tr>
<td valign="top" align="left">Bacterial productivity (BP)</td>
<td valign="top" align="left">ng C L<sup>&#x02212;1</sup> h<sup>&#x02212;1</sup></td>
<td valign="top" align="center">13.7 &#x000B1; 5.5</td>
</tr>
<tr>
<td valign="top" align="left">N<sub>2</sub> fixation</td>
<td valign="top" align="left">nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup></td>
<td valign="top" align="center">0.22 &#x000B1; 0.05</td>
</tr>
<tr>
<td valign="top" align="left">Contribution of N<sub>2</sub> fixation to PP</td>
<td valign="top" align="left">%</td>
<td valign="top" align="center">5.4 &#x000B1; 1.7</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Trichodesmium</italic></td>
<td valign="top" align="left"><italic>nifH</italic> gene copies L<sup>&#x02212;1</sup></td>
<td valign="top" align="left">81264 &#x000B1; 7265</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>n &#x0003D; 3 for all analyses except for the Trichodesmium gene copies where 1 sample was analyzed</italic>.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>Nutrient concentrations</title>
<p>Water samples were collected and analyzed daily to measure phosphate concentrations using the MAGIC method that concentrate the phosphate in the samples, thus allowing a more accurately measures in oligotrophic environments such as the surface waters of the Mediterranean Sea (Rimmelin and Moutin, <xref ref-type="bibr" rid="B70">2005</xref>), nitrite and nitrate concentrations (Strickland and Parsons, <xref ref-type="bibr" rid="B78">1972</xref>), and ammonium concentrations (Ivancic and Deggobis, <xref ref-type="bibr" rid="B34">1984</xref>). The detection limits were 0.8 nM for phosphate, 0.017 &#x003BC;M for nitrate&#x0002B;nitrite, and 0.019 &#x003BC;M for ammonium.</p>
</sec>
<sec>
<title>Chlorophyll <italic>a</italic></title>
<p>Seawater samples (500 mL) were passed through a Whatman GF/F filter, and extracted overnight in 10 mL of 90% acetone solution in the dark. Chlorophyll <italic>a</italic> concentrations were determined by the non-acidification method (Welschmeyer, <xref ref-type="bibr" rid="B85">1994</xref>) using a TD700 fluorometer equipped with 436 nm excitation and 680 nm emission filters.</p>
</sec>
<sec>
<title>Picophytoplankton and heterotrophic bacterial abundance</title>
<p>Samples for determining picophytoplankton and heterotrophic bacterial abundance were collected every day during the experimental period. The samples were fixed with 0.2 &#x003BC;m filtered glutaraldehyde (0.5% final concentration) and held at 4&#x000B0;C for approximately 45 min, flash-frozen in liquid nitrogen, and then transferred to a &#x02212;80&#x000B0;C refrigerator until further processing. Frozen samples were thawed at room temperature and sub-samples were stained with SYBR Green I and incubated for 10 min in the dark, according to Marie et al. (<xref ref-type="bibr" rid="B42">1997</xref>) and Vaulot and Marie (<xref ref-type="bibr" rid="B83">1999</xref>). Samples for picophytoplankton abundance were analyzed based on their auto-fluorescence signals, without pre-staining using a FACSCalibur (Becton Dickinson) flow cytometer equipped with an air-cooled laser at 488 nm and a standard filter set-up (Marie et al., <xref ref-type="bibr" rid="B42">1997</xref>; Vaulot and Marie, <xref ref-type="bibr" rid="B83">1999</xref>). Flow cytometry data were acquired and processed with the Cell Quest Pro software (Becton Dickinson). An average estimated flow rate of 58 &#x003BC;L min<sup>&#x02212;1</sup> was used. The picophytoplankton carbon biomass was calculated from cell counts, assuming 175 fg C cell<sup>&#x02212;1</sup> for <italic>Synechococcus</italic> cells, 53 fg C cell<sup>&#x02212;1</sup> for <italic>Prochlorococcus</italic> cells, and 2100 fg C cell<sup>&#x02212;1</sup> for picoeukaryotes (Campbell and Yentsch, <xref ref-type="bibr" rid="B10">1989</xref>).</p>
</sec>
<sec>
<title>Primary productivity (PP)</title>
<p>Photosynthetic carbon fixation rates were estimated using the <sup>14</sup>C incorporation method (Nielsen, <xref ref-type="bibr" rid="B50">1952</xref>). Water samples were analyzed in triplicate with dark and zero time controls. Polycarbonate (Nalgene) bottles were filled with 50 mL of sample water, inoculated with 5 &#x003BC;Ci of NaH<sup>14</sup>CO<sub>3</sub> tracer (Perkin Elmer, Boston, MA, USA), and incubated for 4 h under natural illumination and temperature. To determine the quantity of the added tracer, 50 &#x003BC;l samples were immediately taken out from each of the polycarbonate bottles and stored with 50 &#x003BC;L of ethanolamine for later analysis. Incubations were terminated by filtering the samples through a GF/F filter using a low vacuum pressure (&#x0003C; 50 mmHg). The filters were then placed in scintillation vials (5 mL) and 50 &#x003BC;l of 32% hydrochloric acid solution were added to each vial in order to remove excess <sup>14</sup>C-bicarbonate overnight. After the addition of 3 mL of scintillation cocktail (ULTIMA-GOLD), the samples were counted using a TRI-CARB 2100 TR (PACKARD) scintillation counter. The hourly PP rates were also compared to daily measurements taken using the NaH<sup>13</sup>CO<sub>3</sub> method as described in Mulholland and Bernhardt (<xref ref-type="bibr" rid="B48">2005</xref>). The positive (<italic>R</italic> &#x0003D; 0.62) and significant (<italic>P</italic> &#x0003C; 0.001) relationship between the two measuring techniques lends credibility to our results and suggest that the use of &#x0201C;potential&#x0201D; PP (4 h incubation and not daily) was accurate enough to characterize the Cretan Sea autotrophic production during the study period.</p>
<p>For the <sup>13</sup>C uptake rate measurements, water samples were placed in triplicate clear 4.5 L polycarbonate Nalgene bottles and amended with (99%) NaH<sup>13</sup>CO<sub>3</sub> (Sigma) to obtain 1% of the ambient dissolved inorganic carbon and incubated under the same conditions and bottles as for the N<sub>2</sub> fixation measurements (see below more details). Triplicate parallel dark bottles were also incubated and subtracted from the light bottles to correct for dark carbon fixation. Incubations were terminated and analyzed as described for the N<sub>2</sub> fixation measurements. The contribution of N<sub>2</sub> fixation to the N demand for primary productivity was estimated using the measured particulate C: N ratio obtained for each sample. A comparison between the rates measured using the <sup>13</sup>C and <sup>14</sup>C methods can be seen in Figure <xref ref-type="supplementary-material" rid="SM2">S1</xref>.</p>
</sec>
<sec>
<title>Bacterial productivity (BP)</title>
<p>Rates of bacterial productivity (BP) were estimated using the [4,5-<sup>3</sup>H]-leucine incorporation method (Simon et al., <xref ref-type="bibr" rid="B75">1990</xref>). Triplicate (1.7 mL) samples were incubated with 100 nmol L<sup>&#x02212;1</sup> [4,5-<sup>3</sup>H]-leucine (Perkin Elmer, Boston, MA, USA) for 4 h at <italic>in situ</italic> temperatures in the dark, with triplicate trichloroacetic acid (TCA) killed samples serving as controls. Incubations were terminated by adding 100 &#x003BC;L of cold TCA (100%) to the vials and treated according to the micro-centrifugation protocol (Simon et al., <xref ref-type="bibr" rid="B75">1990</xref>). After the addition of 1 mL of scintillation cocktail (ULTIMA-GOLD), the samples were counted using a TRI-CARB 2100 TR (PACKARD) scintillation counter. A conversion factor of 3.1 kg C mol<sup>&#x02212;1</sup> and an isotope dilution factor of 2.0 were used to estimate bacterial productivity (Simon et al., <xref ref-type="bibr" rid="B74">1989</xref>).</p>
</sec>
<sec>
<title>Dinitrogen (N<sub>2</sub>) fixation rates</title>
<p><sup>15</sup>N<sub>2</sub> uptake measurements were performed using the <sup>15</sup>N-enriched seawater protocol described by Mohr et al. (<xref ref-type="bibr" rid="B45">2010</xref>), with minor modifications for the Eastern Mediterranean Sea (Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>,<xref ref-type="bibr" rid="B56">c</xref>). Enriched seawater was prepared daily by degassing filtered (0.2-&#x003BC;m) natural seawater using a degassing membrane (Liqui-Cel, MiniModule&#x000AE; G542) for &#x0007E;1 h. Then 1 ml of <sup>15</sup>N<sub>2</sub> gas (99%) was added for every 100 ml of the degassed seawater and shaken vigorously until the bubbles disappeared (&#x0007E;30 min). Aliquots of this <sup>15</sup>N<sub>2</sub>- sea enriched water were then added to the incubation bottles, with the enriched water constituting 5% of the total volume of the sample (i.e., 225 mL). Similar enriched seawater additions collected from the oligotrophic North Pacific Subtropical Gyre (NPSG) resulted in a final <sup>15</sup>N<sub>2</sub> enrichment of 1.5 atom%, following the addition of 50 ml of <sup>15</sup>N<sub>2</sub>-enriched water to a 4.5 L bottle (Wilson et al., <xref ref-type="bibr" rid="B86">2012</xref>). The bottles were then shaken and incubated under ambient surface seawater temperatures. Incubation bottles were either covered with neutral density screening to simulate ambient light or were kept under complete darkness for 24 h (see Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref>). The incubations under ambient irradiance (representative of a full diel cycle having both light and dark cycles) recorded the activities of both autotrophic and heterotrophic diazotrophs, whereas the dark incubations reflected the activity of mainly heterotrophic diazotrophs who do not require light energy for fixing N<sub>2</sub> (Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref>). We estimated the heterotrophic contribution to N<sub>2</sub> fixation by comparing the dark incubations to the bottles incubated under ambient diel irradiance.</p>
<p>The incubations were terminated by filtering water through pre-combusted 25 mm GF/F filters (with a nominal pore size of 0.7 &#x003BC;m). The filters were then dried in an oven at 60&#x000B0;C and stored in a desiccator until analysis. In the laboratory, samples were pelletized in tin disks and analyzed with a Europa 20/20 mass spectrometer equipped with an automated carbon and nitrogen analyzer. For isotope ratio mass spectrometry, standard curves were performed with each sample run to determine N mass. Samples were run only when the standard curves had <italic>R</italic><sup>2</sup> values &#x0003E;0.99. At masses &#x0003E;4.7 &#x003BC;g N, the precision for the atom % <sup>15</sup>N measurement was &#x0003C; 0.0001%, based on daily calibrations made in association with sample runs and with calibrations averaged made throughout several years. For most of the results reported here, the masses were &#x0003E;4.7 &#x003BC;g N. However, samples with &#x0003C; 4.7 &#x003BC;g N were only used if the precision was 0.0001% for that sample run. Standard masses ranged between 1.2 and 100 &#x003BC;g N. In addition to the daily standard curves, reference standards and standards processed as samples were run every 6 to 8 samples.</p>
</sec>
<sec>
<title>DNA sample collection and extraction</title>
<p>Seawater (3&#x02013;8 L) was filtered through GF/D glass microfiber filters (2.7 &#x003BC;m, Whatman International Ltd.) and 0.2 &#x003BC;m pore-sized polyethersulfone membrane filters (Supor-200, Pall Corp.) using a peristaltic pump for a duration of 40 min. Total genomic DNA was recovered from biomass left on the membrane filters using PureLink Genomic DNA Kits (Invitrogen, Carlsbad, CA) (Kong et al. (<xref ref-type="bibr" rid="B37">2013</xref>). Extracted DNA was eluted into 50&#x02013;60 &#x003BC;l of TE buffer (Tris and EDTA) and stored at &#x02212;20&#x000B0;C until further analysis.</p>
</sec>
<sec>
<title>Nested PCR and 454-pyrosequencing</title>
<p>Samples collected onto 0.2 &#x003BC;m filters were sequenced using a 454-pyrosequencing at &#x02212;48, 48, and, 144 h after the atmospheric additions were carried out. The Genomic DNA samples collected from each of the different treatments were pooled into one sample prior to pyrosequencing, granting a representative view of the microbial microorganisms of each mesocosm type. <italic>nifH</italic> gene fragments were amplified from the genomic DNA samples following the nested polymerase chain reaction (PCR) protocol (Zehr and Turner, <xref ref-type="bibr" rid="B92">2001</xref>). The nested PCR reaction was performed in triplicate using a Platinum Taq DNA polymerase PCR system in a volume of 12.5 &#x003BC;L (Invitrogen, Carlsbad, CA), which contained a 1X rxn PCR buffer, 4 mM MgCl<sub>2</sub>, 400 &#x003BC;M dNTPs, 1 &#x003BC;M of primers (nifH 3 and nifH 4 for the first round and nifH 1 and nifH 2 for the second round of the nest PCR), 1 unit of Platinum Taq polymerase and 1 &#x003BC;L of total genomic DNA. Thirty cycles were performed for each of the nested PCR rounds. After the nested PCR cycles ended, 1 &#x003BC;L of the PCR products were used to run 10 cycles of PCR with sample-specific multiplex identifiers (MIDs) and adaptor-attached primers (Farnelid et al., <xref ref-type="bibr" rid="B18">2011</xref>). The PCR condition was the same as that used for the nested PCR. The PCR products were then gel-purified with a Quick gel purification kit (Invitrogen, Carlsbad, CA). For 454-pyrosequencing, the MID-adaptor-labeled PCR products were mixed in the same concentrations to construct an amplicon library following the Rapid Library construction protocols (Roche, 454 Life Science). The DNA library attached beads were loaded onto a Pico TiterPlate and sequenced with a GS Junior System.</p>
</sec>
<sec>
<title>Quantitative PCR (qPCR)</title>
<p><italic>Trichodesmium</italic> sp. <italic>nifH</italic> gene copies were quantified using a TaqMan probe qPCR analysis as described in Moisander et al. (<xref ref-type="bibr" rid="B46">2012</xref>). No other cyanobacterial diazotrophs were detected in any of the mesocosm bags. The qPCR reaction was 10 &#x003BC;L in volume, contained 1 X Premix Ex Taq (Takara), 1 &#x003BC;L genomic DNA or RNA, 0.5 &#x003BC;M reverse and forward primers and 0.25 &#x003BC;M probes (labled with 5&#x02032;-FAM and 3&#x02032;-TAMRA). The qPCR reactions were run in triplicate using the Applied Biosystems&#x00027; 7500 Fast Real-Time PCR System (Applied Biosystems, CA, USA) (Moisander et al., <xref ref-type="bibr" rid="B46">2012</xref>). The linear regression <italic>r</italic><sup>2</sup> value of the standard curve was 0.99 for all the reactions and the efficiency of the qPCR reaction was 101%. The detection limit was 10 <italic>nifH</italic> gene copies L<sup>&#x02212;1</sup>.</p>
</sec>
<sec>
<title>Sequences quality control and analysis</title>
<p>The sequencing quality control and analysis were conducted with Mothur (Schloss et al., <xref ref-type="bibr" rid="B73">2009</xref>). Low quality sequences were removed, including short sequences (&#x0003C; 300 bases in length), ambiguous base-containing sequences and chimeric sequences. The trimmed sequences were de-noised with 0.01 sigma value in order to reduce the effects of the PCR bias and were then aligned with the <italic>nifH</italic> DNA database of the Ribosomal Database Project (Wang et al., <xref ref-type="bibr" rid="B84">2013</xref>). The distances between these high quality DNA sequences were then calculated and clustered at 95% similarity. Based on this similarity clustering, operational taxonomic units (OTUs), representative sequences of each OTU, the Shannon diversity index, and the Chao richness estimator were generated using Mothur. The OTUs that contained more than 10 sequences were selected for the above analysis, whereas the rest of the OTUs were grouped as &#x0201C;other&#x0201D; species. Note that the rarefaction curves of our samples did not reach a plateau (not shown), suggesting that the sequencing depth of our study was insufficient to look at rare diazotrophic species. We therefore set a cutoff of 10 sequences to filter the less abundant OTUs (e.g., Farnelid et al., <xref ref-type="bibr" rid="B19">2013</xref>). The OTU representative DNA sequences were translated into amino acid (aa) sequences using the FrameBOT pipeline in which the frameshift errors were corrected (Wang et al., <xref ref-type="bibr" rid="B84">2013</xref>). The OTU representative sequences were used to search the protein sequence database in the National Center of Biotechnology Information (NCBI) via the protein BLAST webpage (McGinnis and Madden, <xref ref-type="bibr" rid="B43">2004</xref>). The OTU representative sequences and the affiliated references were used to construct a Neighbor-joining phylogenetic tree (p-distance) with MEGA 6.0 (Tamura et al., <xref ref-type="bibr" rid="B80">2013</xref>). The OTUs affiliated with the same reference sequences were grouped and these groups were then named with the species name of the reference sequences. To display the diazotrophic community structures, the relative abundances of these groups were calculated. For the relationships between the samples, the samples were clustered with a Thetayc calculator using an Unweighted Pair Group Method with an Arithmetic Mean (UPGMA) algorithm using Mothur. Sequence data was deposited in NCBI under accession number <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="SRP075730">SRP075730</ext-link>.</p>
</sec>
<sec>
<title>Statistical analysis</title>
<p>Data are displayed as averages; error bars signify one standard deviation (<italic>n</italic> &#x0003D; 3). A repeated measures analysis of variance (ANOVA) was used to compare differences between the control and the SD or A mesocosm treatments. Prior analyses, the ANOVA assumptions, namely the normally and the heterogeneity of variances of the data, were examined. At selected time-points throughout the experiment, a one-way ANOVA followed by Tukey&#x00027;s <italic>post-hoc</italic> test was applied (<italic>P</italic> &#x0003C; 0.05). The relationship between the N<sub>2</sub> fixation and the autotrophic and heterotrophic variables was determined with a Pearson correlation test (<italic>n</italic> &#x0003D; 3, <italic>P</italic> &#x0003C; 0.05). All tests were performed using the XLSTAT software.</p>
</sec>
</sec>
<sec id="s3">
<title>Results and discussion</title>
<sec>
<title>Characteristics of cretan sea surface water</title>
<p>The surface Cretan Sea water used for the mesocosm study exhibited typical low-nutrient, low-chlorophyll, oligotrophic Eastern Mediterranean Sea characteristics (Table <xref ref-type="table" rid="T2">2</xref>; Pitta et al., <xref ref-type="bibr" rid="B52">2016</xref>). The dissolved inorganic nitrite&#x0002B;nitrate, ammonium, and phosphorus (P) concentrations were close to their detection limits (132 &#x000B1; 27, 131&#x000B1; 60, and 13 &#x000B1; 4 nM, respectively), resulting in a high N:P ratio (&#x0007E;20:1). Correspondingly, low surface chlorophyll-<italic>a</italic> was measured prior to any addition (0.06 &#x000B1; 0.01 &#x003BC;g L<sup>&#x02212;1</sup>). The picophytoplankton biomass was within the range previously reported for the Cretan Sea (Ignatiades et al., <xref ref-type="bibr" rid="B33">2002</xref>; Tsiola et al., <xref ref-type="bibr" rid="B82">2016</xref>), with <italic>Synechococcus</italic> the predominant autotrophic picoplankton (5.8 &#x000B1; 0.2 &#x003BC;g C L<sup>&#x02212;1</sup>), followed by pico-eukaryotes (0.6 &#x000B1; 0.2 &#x003BC;g C L<sup>&#x02212;1</sup>). The heterotrophic bacterial biomass was higher than that of the autotrophic bacterioplankton (8.5 &#x000B1; 0.2 &#x003BC;g C L<sup>&#x02212;1</sup>), although it was still at the lower end of that reported for oligotrophic oceans (Cho and Azam, <xref ref-type="bibr" rid="B14">1988</xref> and see Figure 3 in Herut et al., this issue). The surface primary and bacterial productivity rates (PP and BP) were also low (393 &#x000B1; 46 ng C L<sup>&#x02212;1</sup> h<sup>&#x02212;1</sup> for PP and 13.7 &#x000B1; 5.5 ng C L<sup>&#x02212;1</sup> h<sup>&#x02212;1</sup> for BP), and were consistent with previous studies performed in the Cretan Sea (Gotsis-Skretas et al., <xref ref-type="bibr" rid="B23">1999</xref>; Psarra et al., <xref ref-type="bibr" rid="B55">2000</xref>; Tsiola et al., <xref ref-type="bibr" rid="B82">2016</xref>).</p>
<p>Dinitrogen (N<sub>2</sub>) fixation rates, measured using the enriched seawater method (Mohr et al., <xref ref-type="bibr" rid="B45">2010</xref>), were low (0.22 &#x000B1; 0.05 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>), and similar to the rates measured the previous spring in surface waters in the Levantine Basin using identical methodology (Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>). Two days prior to the experiment, N<sub>2</sub> fixation contributed 5.4 &#x000B1; 1.7% to PP (Table <xref ref-type="table" rid="T2">2</xref>), a slightly higher contribution than those estimated during the previous spring (&#x0007E;2%, Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>) and summer (&#x0007E;0.5&#x02013;2%, Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>; Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref>) in the Eastern Mediterranean Sea. We postulate that this may have been due to the relatively high number of <italic>nifH</italic> gene copies observed from the non-filamentous photoautotrophic cyanobacteria <italic>Trichodesmium</italic> (&#x0003E;80,000 gene copies L<sup>&#x02212;1</sup>, Table <xref ref-type="table" rid="T2">2</xref>) found in the Cretan water prior to the experiment. To date, only one sporadic bloom of <italic>Trichode</italic>s<italic>mium</italic> has been recorded in the EMS (Spatharis et al., <xref ref-type="bibr" rid="B77">2012</xref>), and the reason for its rare occurrence in this warm, N-impoverished environment is unknown (Berman-Frank and Rahav, <xref ref-type="bibr" rid="B4">2012</xref>). Our findings here combined with the published literature of N<sub>2</sub> in the Eastern Mediterranean Sea (e.g., Ibello et al., <xref ref-type="bibr" rid="B32">2010</xref>; Bonnet et al., <xref ref-type="bibr" rid="B6">2011</xref>; Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>; Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>,<xref ref-type="bibr" rid="B60">b</xref>,<xref ref-type="bibr" rid="B56">c</xref>; Raveh et al., <xref ref-type="bibr" rid="B63">2015</xref>; Rahav et al., <xref ref-type="bibr" rid="B57">2016a</xref>) suggest patchy spatial and temporal occurrence of cyanobacterial (and other) diazotrophs with variable contribution to PP in the Cretan Sea.</p>
</sec>
<sec>
<title>The response of diazotrophy to Saharan dust and mixed aerosol amendments</title>
<p>The addition of Saharan dust (SD) triggered a rapid (30 h after enrichment) response, with a &#x0007E;2-fold increase in N<sub>2</sub> fixation compared to the unamended controls (0.42 &#x000B1; 0.08 and 0.24 &#x000B1; 0.04 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>, respectively, one-way ANOVA, <italic>P</italic> &#x0003D; 0.02) (Figure <xref ref-type="fig" rid="F1">1</xref>). At T48, N<sub>2</sub> fixation rates declined in all mesocosms, yet remained higher in the SD and A mesocosms than in the controls (Figure <xref ref-type="fig" rid="F1">1</xref>). This decline in all mesocosms may suggest a weak, yet notable, bottle effect imposed by the mesocosm bags (Calvo-D&#x000ED;az et al., <xref ref-type="bibr" rid="B9">2011</xref>), low % enrichment of the enriched seawater used for the N<sub>2</sub> fixation measurements at this specific time point, or competition between the ambient surface microbial populations and diazotrophs that preclude diazotrophs from thriving. The marked and significant differences between the treatments throughout most samplings suggest that even if an experimental artifact occurred at T48, its impact on the measured rates was weak overall. After 78 h, N<sub>2</sub> fixation declined in both SD treatments and control incubations. Yet, N<sub>2</sub> fixation remained 4 times higher in the SD treatments relative to the controls (&#x0007E;0.25 &#x000B1; 0.04 and &#x0007E;0.07 &#x000B1; 0.01 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>, respectively, one-way ANOVA, <italic>P</italic> &#x0003D; 0.004). By day 5 (120 h), N<sub>2</sub> fixation rates in both SD treatments and control incubations were near the limit of analytical detection (&#x0007E;0.10 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>, one-way ANOVA, <italic>P</italic> &#x0003E; 0.05, Figure <xref ref-type="fig" rid="F1">1</xref>). Similarly, the mixed aerosol (A) addition led to an overall increase in N<sub>2</sub> fixation rates in the short term (30 h post addition, Figure <xref ref-type="fig" rid="F1">1</xref>), although the responses were moderate (&#x0007E;1.5&#x02013;2-fold higher rates in treatment incubations relative to controls) and differences between treatments and controls were significant only at the 2 days time point. Similar to the SD treatments, N<sub>2</sub> fixation rates in the A treatments decreased to near the limits of analytical detection and were not significantly different from controls after 144 h (Figure <xref ref-type="fig" rid="F1">1</xref>). The observed changes in N<sub>2</sub> fixation following the SD or A addition can be explained by the enhanced concentrations of essential (and limiting in the unamended seawater) nutrients from the additives such as P (2&#x02013;3 nmol P per mg dust/aerosol, Herut et al., this issue). It is also possible that leached Fe in the SD mesocosms (net change of &#x0007E;6 nM in dissolved Fe 3 h after SD addition), and the insignificant change in the A mesocosms (Herut et al., this issue) could explain the observed increase in N<sub>2</sub> fixation. Despite the increase in N<sub>2</sub> fixation rates in the 30&#x02013;48 h following the SD or A additions, absolute N<sub>2</sub> fixation rates remained low overall throughout the experiment (Figure <xref ref-type="fig" rid="F1">1</xref>). This could be due to limited abundances of diazotrophs in the initial conditions so that overall rates remained low. Furthermore, after the initial enhanced response of the diazotrophs to the added dust- or aerosol-borne nutrients and/or trace elements, competition by more efficient non-diazotrophic phytoplankton or bacteria could have maintained low overall N<sub>2</sub> fixation rates.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>Temporal changes in volumetric N<sub>2</sub> fixation rates during the mesocosm enrichment experiments</bold>. Data are averages of 3 replicate bottles per treatment of the control (gray), SD (white) and A (black) mesocosms during May 2012.</p></caption>
<graphic xlink:href="fmars-03-00180-g0001.tif"/>
</fig>
<p>The short-term enhancement of N<sub>2</sub> fixation rates measured after the addition of SD or A were similar to those observed previously in mesocosm experiments amended with a Saharan dust analog performed in the Western Mediterranean Sea (WMS) during the summer of 2008 and 2010 (2&#x02013;5.3-fold and 4&#x02013;6 days, Ridame et al., <xref ref-type="bibr" rid="B67">2013</xref>). This may suggest common limiting factors for diazotrophy in these two contrasting systems. Elements leached off dust can introduce other nutrients and trace elements to the surface water in different quantities, chemical forms, concentrations and stoichiometry, depending on the dust/aerosol origin (L&#x000E9;on et al., <xref ref-type="bibr" rid="B39">2015</xref>). In addition, atmospheric deposition can be a source of viable diazotrophic microbes as demonstrated from aerosols that originated in the Sahara desert, collected in Israel, and dissolved in seawater from the east Mediterranean Sea (Rahav et al., <xref ref-type="bibr" rid="B61">2016b</xref>). N<sub>2</sub> fixation by these airborne diazotrophs delivered with atmospheric deposition comprised &#x0007E;10&#x02013;15% (&#x0007E;0.03 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>) of the &#x0201C;typical-average&#x0201D; rates measured in the EMS (0.10&#x02013;0.20 nmol N L<sup>&#x02212;1</sup> d<sup>&#x02212;1</sup>), suggesting that atmospheric deposition can supply not only nutrients and trace metals to stimulate <italic>in situ</italic> N<sub>2</sub> fixation but may potentially deliver diazotrophs (Rahav et al., <xref ref-type="bibr" rid="B61">2016b</xref>). Yet, the role of airborne diazotrophs should be extensively studied in the Mediterranean Sea as well as in other marine environments exposed to high atmospheric depositions such as the North Atlantic Ocean and the China Sea. In the present study, we did not determine the contribution of diazotrophs or other bacteria originating from our SD and A additions (i.e., measure N<sub>2</sub> fixation and BP, PP in SD or A added to sterile seawater). Other factors that regulating diazotrophs and N<sub>2</sub> fixation rates include top&#x02013;down effects by grazing (Stukel et al., <xref ref-type="bibr" rid="B79">2014</xref>), viral cell lysis (Hewson et al., <xref ref-type="bibr" rid="B31">2009</xref>), competition with non-diazotrophic primary producers such as <italic>Prochlorococcus</italic> (Moisander et al., <xref ref-type="bibr" rid="B46">2012</xref>) or bacterial heterotrophs (Thingstad et al., <xref ref-type="bibr" rid="B81">2005</xref>), and other nutritional constraints such as carbon for heterotrophs (Rahav et al., <xref ref-type="bibr" rid="B57">2016a</xref>) or vitamin B12 (Bonnet et al., <xref ref-type="bibr" rid="B8">2010</xref>) may further limit production. Top&#x02013;down grazing of diazotrophs probably did not greatly impact the diazotrophic populations in our experiments. Zooplankton abundance did not vary significantly between the mesocosms (M. Lou personal communication). Specifically, no known diazotroph grazers such as <italic>Macrosetella gracilis</italic> that feed on <italic>Trichodesmium</italic> cells were found in our mesocosms nor observed in the few surveys performed in the EMS (Kimor and Wood, <xref ref-type="bibr" rid="B35">1975</xref>; Zakaria, <xref ref-type="bibr" rid="B90">2015</xref>). In contrary, we hypothesize that airborne microbes or viruses can be important in regulating surface N<sub>2</sub> fixation in the Mediterranean Sea. Such interactions may occur especially in light of the high amount of aerosols deposited to the surface waters of Mediterranean Sea (Guerzoni et al., <xref ref-type="bibr" rid="B26">1999</xref>), which potentially brings &#x0007E;10<sup>7</sup> viruses per m<sup>3</sup> of air (Prospero et al., <xref ref-type="bibr" rid="B54">2005</xref>; Womack et al., <xref ref-type="bibr" rid="B87">2010</xref>; Polymenakou, <xref ref-type="bibr" rid="B53">2012</xref>). Yet, examination of these factors was beyond the scope of the present study and warrants more research.</p>
<p>Both heterotrophic and cyanobacterial diazotrophs were present in this mesocosm study (Figure <xref ref-type="fig" rid="F2">2</xref>) with the Shannon diversity index ranging between 0.7 and 2.5 throughout the entire experiment (Figure <xref ref-type="fig" rid="F2">2</xref>). Based on the relative abundance of the <italic>nifH</italic> OTUs, most diazotrophs present in the original Cretan Sea water samples grouped into known <italic>nifH</italic> clusters (Figure <xref ref-type="fig" rid="F3">3</xref>; Chien and Zinder, <xref ref-type="bibr" rid="B13">1996</xref>; Zehr et al., <xref ref-type="bibr" rid="B91">2003</xref>). After 2 days (48 h), the diazotroph community in the control treatments was dominated by <italic>Sideroxydans</italic> (30%) and <italic>Acrobacter</italic> (20%), whereas in the SD and A treatments <italic>Trichodesmium</italic> (68%) and <italic>Pseudomonas</italic> (41%) respectively dominated the diazotroph populations. At the conclusion of the experiment, the diazotrophic communities in the control mesocosms had shifted to <italic>Azorhizobium</italic> and <italic>Novosphingobium, Azorhizobium</italic> in the SD treatments, and <italic>Burkholderia</italic> in the A amended mesocosms (Figure <xref ref-type="fig" rid="F3">3</xref>). By the end of the experiment (144 h), the Shannon diversity dropped to 0.5&#x02013;1.5. One explanation for this convergence in microbial populations is the potential of those OTUs to successfully utilize heavy metal concentrations as those found in the SD and A additions (see Table 4 in Herut et al., this issue).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>A neighbor-joining phylogentic tree constructed with <italic>nifH</italic> gene amino acid sequences</bold>. Samples were taken 2 days prior to the addition of the SD or A addition. The differently-colored sequences are representative sequences of the OTUs revealed in this study. The sequences fall into Cluster I proteobacteria (blue), Cluster III (yellow), and cyanobacteria (green). The accession numbers of each reference sequence are shown in front of the sequence names.</p></caption>
<graphic xlink:href="fmars-03-00180-g0002.tif"/>
</fig>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p><bold>The relative abundance (%) of the <italic>nifH</italic> DNA phyla during the mesocosm enrichment experiment of May 2012</bold>.</p></caption>
<graphic xlink:href="fmars-03-00180-g0003.tif"/>
</fig>
<p>While some cyanobacteria, including <italic>Trichodesmium</italic>, were present, most <italic>nifH</italic> OTUs retrieved in this experiment belonged to Proteobacteria. The overall predominance of non-cyanobacterial heterotrophic bacteria over autotrophic diazotrophs, highlights the importance of heterotrophic diazotrophy in the EMS waters as recorded in the Levantine Basin (Man-Aharonovich et al., <xref ref-type="bibr" rid="B40">2007</xref>; Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>; Rahav et al., <xref ref-type="bibr" rid="B56">2013c</xref>) and also across the Mediterranean (Benavides et al., <xref ref-type="bibr" rid="B1">2016</xref>). A greater contribution of heterotrophic diazotrophs is now recognized also from many other oceanic environments (reviewed in Riemann et al., <xref ref-type="bibr" rid="B69">2010</xref>) including the Red Sea (Foster et al., <xref ref-type="bibr" rid="B21">2009</xref>; Rahav et al., <xref ref-type="bibr" rid="B59">2015</xref>), the western North Atlantic Ocean (Mulholland et al., <xref ref-type="bibr" rid="B49">2012</xref>) and the English Channel (Rees et al., <xref ref-type="bibr" rid="B64">2009</xref>, <xref ref-type="bibr" rid="B66">2016</xref>).</p>
<p>To further estimate the role of heterotrophic diazotrophs in our system, we simultaneously incubated light and dark 4.6 L bottles (microcosms) from each treatment (Table <xref ref-type="table" rid="T3">3</xref>). We assumed that dark incubations mainly reflect the activity of heterotrophic diazotrophs that do not require light energy for N<sub>2</sub> fixation, and estimated the heterotrophic contribution to N<sub>2</sub> fixation by comparing the dark incubations to light bottles incubated under the ambient surface irradiance. When we compared our light vs. dark bottle incubations, we found that the light:dark N<sub>2</sub> fixation ratio in the control mesocosms was usually &#x0007E;1 (average 1.7 &#x000B1; 1.6, Table <xref ref-type="table" rid="T3">3</xref>), suggesting N<sub>2</sub> was fixed by both autotrophic and heterotrophic diazotrophs. Enrichment by SD or A caused the light:dark ratio to decline (an average of 0.8 &#x000B1; 0.7 for SD and 0.8 &#x000B1; 0.3 for A, Table <xref ref-type="table" rid="T3">3</xref>), implying that the aerosol additions disproportionately stimulated heterotrophic N<sub>2</sub> fixation. Similar comparisons between ambient light and dark bottle N<sub>2</sub> fixation rates showed the same trend in the Mediterranean (also in the spring) and the Gulf of Aqaba/Northern Red Sea (in summertime), highlighting the important role of heterotrophs in fixing dinitrogen in ultra-oligotrophic systems (Bonnet et al., <xref ref-type="bibr" rid="B5">2013</xref>; Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>, <xref ref-type="bibr" rid="B59">2015</xref>).</p>
<table-wrap position="float" id="T3">
<label>Table 3</label>
<caption><p><bold>The N<sub>2</sub> fixation rates of Cretan sub-surface water in experimental mesocosms (controls, &#x0002B;SD, &#x0002B;A), for bottles incubated under ambient lighting (L) and in complete darkness (D) for 24 h</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Time after enrichment (h)</bold></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><bold>Incubation under ambient light</bold></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><bold>Incubation under complete dark</bold></th>
<th valign="top" align="center" colspan="3" style="border-bottom: thin solid #000000;"><bold>Light:dark N<sub>2</sub> fixation ratio</bold></th>
</tr>
<tr>
<th/>
<th valign="top" align="center"><bold>Control</bold></th>
<th valign="top" align="center"><bold>SD</bold></th>
<th valign="top" align="center"><bold>A</bold></th>
<th valign="top" align="center"><bold>Control</bold></th>
<th valign="top" align="center"><bold>SD</bold></th>
<th valign="top" align="center"><bold>A</bold></th>
<th valign="top" align="center"><bold>Control</bold></th>
<th valign="top" align="center"><bold>SD</bold></th>
<th valign="top" align="center"><bold>A</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">0</td>
<td valign="top" align="center">0.22 &#x000B1; 0.01</td>
<td/>
<td/>
<td valign="top" align="center">0.05 &#x000B1; 0.00</td>
<td/>
<td/>
<td valign="top" align="center">4.4</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">30</td>
<td valign="top" align="center">0.24 &#x000B1; 0.04</td>
<td valign="top" align="center">0.42 &#x000B1; 0.08</td>
<td valign="top" align="center">0.31 &#x000B1; 0.06</td>
<td valign="top" align="center">0.17 &#x000B1; 0.09</td>
<td valign="top" align="center">0.22 &#x000B1; 0.06</td>
<td valign="top" align="center">0.28 &#x000B1; 0.02</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">1.9</td>
<td valign="top" align="center">1.1</td>
</tr>
<tr>
<td valign="top" align="left">48</td>
<td valign="top" align="center">0.07 &#x000B1; 0.02</td>
<td valign="top" align="center">0.28 &#x000B1; 0.02</td>
<td valign="top" align="center">0.15 &#x000B1; 0.07</td>
<td valign="top" align="center">N.A</td>
<td valign="top" align="center">N.A</td>
<td valign="top" align="center">N.A</td>
<td valign="top" align="center">N.A</td>
<td valign="top" align="center">N.A</td>
<td valign="top" align="center">N.A</td>
</tr>
<tr>
<td valign="top" align="left">72</td>
<td valign="top" align="center">0.07 &#x000B1; 0.01</td>
<td valign="top" align="center">0.25 &#x000B1; 0.04</td>
<td valign="top" align="center">0.16 &#x000B1; 0.03</td>
<td valign="top" align="center">0.05 &#x000B1; 0.01</td>
<td valign="top" align="center">0.60 &#x000B1; 0.02</td>
<td valign="top" align="center">0.34 &#x000B1; 0.08</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">0.4</td>
<td valign="top" align="center">0.5</td>
</tr>
<tr>
<td valign="top" align="left">120</td>
<td valign="top" align="center">0.10 &#x000B1; 0.07</td>
<td valign="top" align="center">0.14 &#x000B1; 0.06</td>
<td valign="top" align="center">0.15 &#x000B1; 0.09</td>
<td valign="top" align="center">0.44 &#x000B1; 0.20</td>
<td valign="top" align="center">0.38 &#x000B1; 0.01</td>
<td valign="top" align="center">0.18 &#x000B1; 0.13</td>
<td valign="top" align="center">0.2</td>
<td valign="top" align="center">0.4</td>
<td valign="top" align="center">0.8</td>
</tr>
<tr style="border-bottom: thin solid #000000;">
<td valign="top" align="left">144</td>
<td valign="top" align="center">0.07 &#x000B1; 0.00</td>
<td valign="top" align="center">0.15 &#x000B1; 0.05</td>
<td valign="top" align="center">0.02 &#x000B1; 0.00</td>
<td valign="top" align="center">0.07 &#x000B1; 0.00</td>
<td valign="top" align="center">0.29 &#x000B1; 0.03</td>
<td valign="top" align="center">0.05 &#x000B1; 0.01</td>
<td valign="top" align="center">1.0</td>
<td valign="top" align="center">0.5</td>
<td valign="top" align="center">0.7</td>
</tr> <tr>
<td valign="top" align="left">Average</td>
<td valign="top" align="center">0.14 &#x000B1; 0.08</td>
<td valign="top" align="center">0.25 &#x000B1; 0.09</td>
<td valign="top" align="center">0.18 &#x000B1; 0.09</td>
<td valign="top" align="center">0.16 &#x000B1; 0.16</td>
<td valign="top" align="center">0.37 &#x000B1; 0.16</td>
<td valign="top" align="center">0.21 &#x000B1; 0.13</td>
<td valign="top" align="center">1.7 &#x000B1; 1.6</td>
<td valign="top" align="center">0.8 &#x000B1; 0.7</td>
<td valign="top" align="center">0.8 &#x000B1; 0.3</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>Values are averages of 3 independent replicates. The time 0 measurement is an average of 3 randomly picked mesocosms. N.A, not available</italic>.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec>
<title>The contribution of N<sub>2</sub> fixation to primary productivity in the cretan sea during spring</title>
<p>To estimate the contribution of N<sub>2</sub> fixation to primary productivity, we calculated the contribution of the fixed N (as particulate organic nitrogen, PON) to the total particulate organic carbon (POC) from the mesocosms. An average POC:PON ratio of &#x0007E;8 concurs with previous measurements from the open-waters of the Levantine basin (Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>; Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref>). We subsequently used this average to calculate the percent contribution of N<sub>2</sub> fixation to PP. Our results show that N<sub>2</sub> fixation contributed 2&#x02013;4% (<italic>P</italic> &#x0003E; 0.05) of PP following the mixed aerosol additions and 3&#x02013;8% (<italic>P</italic> &#x0003D; 0.04) after SD additions (Figure <xref ref-type="fig" rid="F4">4</xref>). These estimations (2&#x02013;8%) are in line with other estimates from the Mediterranean Sea (Garcia et al., <xref ref-type="bibr" rid="B22">2006</xref>; Bonnet et al., <xref ref-type="bibr" rid="B6">2011</xref>; Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>; Rahav et al., <xref ref-type="bibr" rid="B60">2013b</xref>). However, this is not surprising as heterotrophic diazotrophs comprised the bulk of the retrieved <italic>nifH</italic> OTUs and the dark N<sub>2</sub> fixation was generally higher than the rates measured under ambient light (Table <xref ref-type="table" rid="T3">3</xref> and discussion above). The positive coupling between N<sub>2</sub> fixation and bacterial abundance (BA) or bacterial production (BP), while no distinct pattern was observed with <italic>Trichodesmium nifH</italic> gene expression (Figure <xref ref-type="fig" rid="F5">5</xref>), further supports the importance of heterotrophic bacterial diazotrophs in this system (Rahav et al., <xref ref-type="bibr" rid="B58">2013a</xref>, <xref ref-type="bibr" rid="B59">2015</xref>).</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p><bold>The contribution of N<sub>2</sub> fixation to primary productivity (PP) in the control (gray), SD (white), and A (black) mesocosms</bold>.</p></caption>
<graphic xlink:href="fmars-03-00180-g0004.tif"/>
</fig>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><bold>The relationship between N<sub>2</sub> fixation and (A) bacterial abundance; BA, (B) bacterial production; BP, and (C) <italic>Trichodesmium nifH</italic> copies, in the first 144 h following the Saharan dust (SD) and mixed aerosol (A) enrichments</bold>.</p></caption>
<graphic xlink:href="fmars-03-00180-g0005.tif"/>
</fig>
<p>Higher contributions of diazotrophs to primary productivity are typically found where filamentous cyanobacterial N<sub>2</sub>-fixers predominate. For example, the contribution of <italic>Trichodesmium</italic> to PP was 11.6% in the outer Sanya Bay of the China Sea (Dong et al., <xref ref-type="bibr" rid="B15">2008</xref>), 22 and 44% in the equatorial Atlantic and South Atlantic Gyre, respectively (Fern&#x000E1;ndez et al., <xref ref-type="bibr" rid="B20">2010</xref>), and 47% of the total depth-integrated PP in the North Atlantic Ocean (Carpenter et al., <xref ref-type="bibr" rid="B12">2004</xref>).</p>
<p>In cases where EMS surface water receives Saharan dust inputs (as tested here), <italic>Trichodesmium</italic>-derived PP may be enhanced if there is a seed population that can respond to the addition. Yet, as previously observed, the diazotrophs that characterize the EMS are predominantly small-sized bacterial phylotypes (Figure <xref ref-type="fig" rid="F3">3</xref>; Man-Aharonovich et al., <xref ref-type="bibr" rid="B40">2007</xref>; Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>), and <italic>Trichodesmium</italic> is uncommon (Yogev et al., <xref ref-type="bibr" rid="B89">2011</xref>; Spatharis et al., <xref ref-type="bibr" rid="B77">2012</xref>).</p>
<p>Finally, our results demonstrate that intense dust and aerosol deposition events (as frequently occur in the Mediterranean Sea, Herut et al., <xref ref-type="bibr" rid="B28">2002</xref>; Bonnet and Guieu, <xref ref-type="bibr" rid="B7">2006</xref>) may potentially fuel diazotrophy and alter the composition of diazotrophic communities. Furthermore, these depositions to the Mediterranean Sea can also enrich surface waters with bioavailable N sources (Carbo et al., <xref ref-type="bibr" rid="B11">2005</xref>; Herut et al., <xref ref-type="bibr" rid="B30">2005</xref>; and see Table <xref ref-type="supplementary-material" rid="SM1">S1</xref> in Rahav et al., <xref ref-type="bibr" rid="B62">2016c</xref>). The higher N concentrations can stimulate new production and induce changes in community structure such as a shift from populations of picophytoplankton to larger-size class microphytoplankton such as diatoms and dinoflagellates (Guieu et al., <xref ref-type="bibr" rid="B27">2014</xref>), which, in turn, may enhance organic matter export and reduce the high recycling rates typical for the microbial food web of the EMS.</p>
</sec>
</sec>
<sec id="s4">
<title>Author contributions</title>
<p>Conceived and designed the experiments: ER, BH, IB-F. Performed the experiments: ER, BH, IB-F, GC, HL, TT, AG, AT, SP, AL, MM, ES, PP. Analyzed the data: ER, BH, IB-F, CS. Contributed reagents/materials/analysis tools: BH, IB-F, MM, PP Wrote the paper: ER, BH, IB-F.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack>
<p>The authors wish to thank Dr. P. Divanach for his valuable advice on technical matters, G. Piperakis for his inspired technical assistance, S. Zivanovic and E. Dafnomili for assisting with chemical analyses, A. Konstantinopoulou for assisting with bacterial production analyses, D. Podaras and S. Diliberto for assisting during the experiment, and N. Sekeris for his help with constructions and with ideas regarding technical solutions. The captain and the crew of the R/V Philia are also thanked for their assistance during the transportation of water from the sea to the mesocosms. This study was in partial fulfillment of a Ph.D. thesis for ER from Bar Ilan University. This work was financed by the European Union Seventh Framework Program (FP7/2007&#x02013;2013) under grant agreement no. 228224, &#x0201C;MESOAQUA: Network of leading MESOcosm facilities to advance the studies of future AQUAtic ecosystems from the Arctic to the Mediterranean&#x0201D; through grants to ER, GC, HL, BH, and IB-F, by the EU and Greek-national-funded Program THALES-ADAMANT and the Israel Science Foundation grants (996/08) to IB-F and BH.</p>
</ack>
<sec sec-type="supplementary-material" id="s5">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="http://journal.frontiersin.org/article/10.3389/fmars.2016.00180">http://journal.frontiersin.org/article/10.3389/fmars.2016.00180</ext-link></p>
<supplementary-material xlink:href="DataSheet1.DOCX" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Image1.TIF" id="SM2" mimetype="image/tif" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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