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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2024.1382459</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Pharmacodynamic monitoring by residual gene expression of the nuclear factor of activated T cell-regulated genes in lung transplant recipients and its correlation with tacrolimus blood levels</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Boada-P&#xe9;rez</surname>
<given-names>Meritxell</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Ruiz de Miguel</surname>
<given-names>Victoria</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Erro</surname>
<given-names>Marta</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ussetti</surname>
<given-names>Piedad</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Aguilar</surname>
<given-names>Myriam</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Castej&#xf3;n</surname>
<given-names>Raquel</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rosado</surname>
<given-names>Silvia</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2718983"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Escobar-Fornieles</surname>
<given-names>Roser</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Revilla-L&#xf3;pez</surname>
<given-names>Eva</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2067227"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Bravo</surname>
<given-names>Carlos</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>S&#xe1;ez-Gim&#xe9;nez</surname>
<given-names>Berta</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2166061"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zapata-Ortega</surname>
<given-names>Marta</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Villena-Ortiz</surname>
<given-names>Yolanda</given-names>
</name>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
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<contrib contrib-type="author">
<name>
<surname>Vima-Bofarull</surname>
<given-names>Jaume</given-names>
</name>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
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</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Monforte</surname>
<given-names>V&#xed;ctor</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2266230"/>
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<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>G&#xf3;mez-Oll&#xe9;s</surname>
<given-names>Susana</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
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</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Medicine, Universitat Aut&#xf2;noma de Barcelona</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Pulmonology, Vall d&#x2019;Hebron Institut de Recerca</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Pulmonary Medicine, University Hospital Puerta de Hierro</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Internal Medicine Laboratory, Instituto de Investigaci&#xf3;n Puerta de Hierro Segovia de Arana</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Department of Pulmonology, Lung Transplant Program, Hospital Universitari Vall d&#x2019;Hebron</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Centro de Investigaci&#xf3;n Biom&#xe9;dica en Red de Enfermedades Respiratorias (CIBERES), Instituto de Salud Carlos III</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>
<aff id="aff7">
<sup>7</sup>
<institution>Department of Cellular Biology, Physiology and Immunology, Universitat Aut&#xf2;noma de Barcelona</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<aff id="aff8">
<sup>8</sup>
<institution>Central Laboratory Services, Pharmacology Section, Hospital Universitari Vall d&#x2019;Hebron</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Manuel Muro, Virgen de la Arrixaca University Hospital, Spain</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Olga Mill&#xe1;n, Carlos III Health Institute (ISCIII), Spain</p>
<p>Michael Adu Gyamfi, Charit&#xe9; University Medicine Berlin, Germany</p>
<p>Maja-Theresa Dieterlen, HELIOS Clinic, Germany</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: V&#xed;ctor Monforte, <email xlink:href="mailto:victor.monforte@vallhebron.cat">victor.monforte@vallhebron.cat</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>05</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1382459</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>02</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>04</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Boada-P&#xe9;rez, Ruiz de Miguel, Erro, Ussetti, Aguilar, Castej&#xf3;n, Rosado, Escobar-Fornieles, Revilla-L&#xf3;pez, Bravo, S&#xe1;ez-Gim&#xe9;nez, Zapata-Ortega, Villena-Ortiz, Vima-Bofarull, Monforte and G&#xf3;mez-Oll&#xe9;s</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Boada-P&#xe9;rez, Ruiz de Miguel, Erro, Ussetti, Aguilar, Castej&#xf3;n, Rosado, Escobar-Fornieles, Revilla-L&#xf3;pez, Bravo, S&#xe1;ez-Gim&#xe9;nez, Zapata-Ortega, Villena-Ortiz, Vima-Bofarull, Monforte and G&#xf3;mez-Oll&#xe9;s</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Trough blood levels (C<sub>0</sub>) of tacrolimus are used to adjust drug dosage, but they do not consistently correlate with clinical outcomes. Measurement of residual gene expression of nuclear factor of activated T cell (NFAT)-regulated genes (NFAT-RGE) has been proposed as a pharmacodynamic biomarker to assess the degree of immunosuppression in certain solid organ transplantations, but little is known regarding lung transplant recipients (LTR). Our primary objective is to correlate tacrolimus blood levels with NFAT-RGE.</p>
</sec>
<sec>
<title>Methods</title>
<p>NFAT-RGE and tacrolimus C<sub>0</sub> and peak (C<sub>1.5</sub>) levels were determined in 42 patients at three, six and 12 months post-transplantation.</p>
</sec>
<sec>
<title>Results</title>
<p>Tacrolimus C<sub>0</sub> did not exhibit a correlation with NFAT-RGE, whereas C<sub>1.5</sub> did. Besides, over 20% of measurements indicated high levels of immunosuppression based on the below 30% NFAT-RGE threshold observed in many studies. Among those measurements within the therapeutic range, 19% had an NFAT-RGE&lt;30%.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>Consequently, a subset of patients within the tacrolimus therapeutic range may be more susceptible to infection or cancer, potentially benefiting from NFAT-RGE and tacrolimus peak level monitoring to tailor their dosage. Further quantitative risk assessment studies are needed to elucidate the relationship between NFAT-RGE and the risk of infection, cancer, or rejection.</p>
</sec>
</abstract>
<kwd-group>
<kwd>pharmacodynamics</kwd>
<kwd>pharmacokinetics</kwd>
<kwd>tacrolimus</kwd>
<kwd>rejection</kwd>
<kwd>infection</kwd>
<kwd>therapeutic drug monitoring</kwd>
<kwd>biomarker</kwd>
</kwd-group>
<counts>
<fig-count count="4"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="25"/>
<page-count count="9"/>
<word-count count="4428"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Alloimmunity and Transplantation</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>After lung transplantation (LT), immunosuppressive regimens are used to reduce the rate of acute and chronic rejection, which continue to represent significant sources of morbidity and mortality in this population (<xref ref-type="bibr" rid="B1">1</xref>). While immunosuppressive therapy protocols vary from center to center, conventional maintenance therapy consists of a triple drug combination with a calcineurin inhibitor (cyclosporine or tacrolimus, CNI), an antiproliferative agent, and corticosteroids (<xref ref-type="bibr" rid="B2">2</xref>). CNIs remain the cornerstone of immunosuppression following LT, and tacrolimus is currently the drug of choice. However, tacrolimus is characterized by a wide intra- and inter-individual pharmacokinetic variability and a narrow therapeutic index. Thus, therapeutic drug monitoring (TDM) is mandatory. In current clinical practice, tacrolimus dose adjustment is performed solely through a pharmacokinetic measurement of its trough levels, and in particular cases by performing an abbreviated area under the curve assessment. Nevertheless, pharmacokinetic monitoring does not have an optimal correlation with clinical outcomes (<xref ref-type="bibr" rid="B3">3</xref>), making it challenging to determine an individual patient&#x2019;s risk for infection or rejection. Therefore, efforts are being made to find non-invasive biomarkers and pharmacodynamic monitoring strategies capable of measuring an individual patient&#x2019;s state of immunosuppression.</p>
<p>One of the most promising immune function assays is the measurement of residual expression of nuclear factor of activated T-cells (NFAT)-regulated genes (NFAT-RGE) in the peripheral blood by real-time quantitative polymerase chain reaction (RT-qPCR) (<xref ref-type="bibr" rid="B3">3</xref>&#x2013;<xref ref-type="bibr" rid="B12">12</xref>). The immunosuppressive effect of tacrolimus is produced by inhibition of the calcineurin-NFAT signaling pathway in T-helper cells. In broad terms, tacrolimus binds to an immunophilin causing a non-competitive inhibition of calcineurin-phosphatase activity which is necessary for activation of cytoplasmic nuclear factors such as NFAT, which then translocate to the nucleus and activate cytokine transcription, a critical step in T-cell activation (<xref ref-type="bibr" rid="B13">13</xref>). Among other actions, NFAT facilitates transcription of interleukin-2 (IL-2), interferon gamma (IFN-&#x3b3;), or granulocyte and macrophage colony-stimulating factor (GM-CSF) (<xref ref-type="bibr" rid="B14">14</xref>, <xref ref-type="bibr" rid="B15">15</xref>).</p>
<p>Most of the studies published so far on the use of NFAT-RGE refer to liver and kidney transplantation (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B12">12</xref>), and some of them have been performed in patients receiving cyclosporine A-based immunosuppression (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B16">16</xref>). Those studies have shown a lower residual expression among patients with recurrent infections or viremia and an increased risk of malignancies. In contrast, patients with a high residual cytokine expression have been associated with an increased risk of rejection (<xref ref-type="bibr" rid="B17">17</xref>). Several clinical trials have also demonstrated the feasibility of adjusting tacrolimus dosing according to NFAT-RGE in kidney and liver transplantation (<xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B18">18</xref>). However, there is still little information on the use of this promising pharmacodynamic tool in the field of lung transplantation. Though information on NFAT-RGE assessment in LT recipients (LTR) is scarce, it has been tentatively suggested that the biomarker may be useful in identifying recipients at an increased risk of infection (<xref ref-type="bibr" rid="B19">19</xref>).</p>
<p>The aim of this study is to assess NFAT-RGE in relation to trough and peak blood levels of tacrolimus in LTR. We also aim to stratify patients by their grade of immunosuppression based on the below 30% NFAT-RGE threshold observed in many studies.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Study design and population</title>
<p>This prospective, observational study included 42 LTR transplanted between February 2020 and September 2021. Patients were over 18 years old and were willing to participate in the study during the first 12 months post-transplant, all providing written informed consent. All procedures were conducted in accordance with the ethical standards of Vall d&#x2019;Hebron University Hospital&#x2019;s ethics committee (PR(AG)101/2019), and with the Declaration of Helsinki (2013).</p>
<p>All patients were enrolled before transplantation, and blood samples were collected at three (33 samples), six (33 samples) and 12 (21 samples) months after transplantation concurrently with routine blood tests. Ten patients contributed only one sample, 19 provided two samples and 13 patients had samples collected at all three time points.</p>
<p>Patients received immunosuppressive therapy according to institutional protocols, which included a triple-drug regimen consisting of tacrolimus, mycophenolic acid, and corticosteroids. In some cases, mycophenolic acid had to be temporarily discontinued due to leukopenia. The target trough levels for tacrolimus were set between 10-15 ng/mL. All patients initially received immediate-release tacrolimus, and five required a switch to extended-release tacrolimus. Thus, a total of 82 samples were collected with immediate-release tacrolimus, and five samples with extended-release tacrolimus.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Tacrolimus pharmacokinetic monitoring</title>
<p>Tacrolimus trough (C<sub>0</sub>) and peak (C<sub>1.5</sub>) levels were analyzed using high-performance liquid chromatography-mass spectrometry (HPLC-MS) at the clinical laboratories of Vall d&#x2019;Hebron University Hospital.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Tacrolimus pharmacodynamic monitoring</title>
<p>The blood samples used for pharmacodynamic monitoring were obtained in parallel with the blood samples for pharmacokinetic monitoring and were analyzed at Vall d&#x2019;Hebron Research Institute.</p>
<p>To do so, blood samples were collected in BD Vacutainer<sup>&#xae;</sup> lithium heparin tubes. One milliliter of heparinized blood was stimulated with 1 mL of complete RPMI 1640 (Gibco) enriched with 100 ng/mL of phorbol 12-myristate 13-acetate (PMA) and 5 &#xb5;g/mL of ionomycin (Sigma Aldrich, Saint Louis, MO) for three hours at 37&#xb0;C and 5% CO<sub>2</sub>. Then, 10 mL of RNA/DNA Stabilization Reagent for Blood/Bone Marrow (Roche, Mannheim, Germany) were added to lyse cells and stabilize nucleic acids, according to the manufacturer&#x2019;s instructions. Samples were stored at -20&#xb0;C for a maximum of a year.</p>
<p>mRNA was isolated using an mRNA Isolation Kit for Blood/Bone Marrow (Roche, Mannheim, Germany) following the manufacturer&#x2019;s instructions. It was then stored at -20&#xb0;C for a week or less, or at -80&#xb0;C indefinitely.</p>
<p>Reverse transcription was performed with 8.2 &#xb5;L of mRNA in a thermocycler using avian myeloblastosis virus reverse transcriptase and oligo (dT) as a primer (First Strand cDNA synthesis kit Roche, Mannheim, Germany) following the manufacturer&#x2019;s instructions. The resulting cDNA was stored concentrated at -20&#xb0;C until further use.</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Gene expression analysis</title>
<p>First, cDNA was diluted to a final volume of 200 &#xb5;L by adding 180 &#xb5;L of water. Gene expression of three genes regulated by NFAT (IL-2, IFN-&#x3b3; and GM-CSF) was quantified by performing real-time quantitative PCR in a LightCycler<sup>&#xae;</sup> 480 thermocycler (Roche Diagnostics, Basel, Switzerland). Target sequences were amplified using commercially available LightCycler Primer Sets (Search-LC, Heidelberg, Germany) with the LightCycler FastStart DNA Sybr Green I Kit (Roche Diagnostics, Basel, Switzerland), following the manufacturer&#x2019;s instructions. Transcript concentrations for each gene were calculated from a virtual standard curve. The mRNA input was normalized by the constant expression of two reference genes (&#x3b2;-actin and cyclophilin B). Quantification cycle values were determined using the fit point method.</p>
<p>The percentage of NFAT-RGE was calculated as: [(IL-2 adjusted transcripts C<sub>1.5</sub>/C<sub>0</sub> X 100) + (IFN-&#x3b3; adjusted transcripts C<sub>1.5</sub>/C<sub>0</sub> X 100) + (GM-CSF adjusted transcripts C<sub>1.5</sub>/C<sub>0</sub> X 100)]/3. For further details, see previous reports (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B19">19</xref>).</p>
<p>Previous studies, mostly conducted in kidney transplantation, demonstrated that patients with an NFAT-RGE lower than 30% were at high risk of infection and malignancies (<xref ref-type="bibr" rid="B5">5</xref>). Therefore, this study used a cut-off of NFAT-RGE &lt;30% to stratify patients as having a high degree of immunosuppression and an increased risk of infection.</p>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>Statistical analysis</title>
<p>Continuous variables were presented as mean &#xb1; standard deviation (SD) or median &#xb1; interquartile range (IQR). Categorical variables were described as frequencies and percentages. Normality of distributions was evaluated before performing statistical analyses to determine the most appropriate test for each case. Chi-Square or Fisher&#x2019;s exact test was used for comparisons between qualitative variables, while t-tests for two independent variables/ANOVA test (&gt;2 categories) or Mann Whitney/Kruskal Wallis U tests were employed for continuous variables. Pearson&#x2019;s test was used to examine linear correlations in Gaussian variables, and Spearman&#x2019;s was used for non-Gaussian variables. Statistical significance was set at p &#x2264; 0.05. All analyses were performed using Graphpad Prism 9.0 statistical software (GraphPad Software, LLC, San Diego, CA).</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Inhibition of NFAT-regulated genes over time after LT</title>
<p>Residual expression of the three NFAT-regulated genes analyzed in this project remained stable over time after LT. The median IL-2 RGE was 35% (IQR=18%-70%) at three months, 42% (IQR=22%-65%) at six months, and 50% (IQR=30%-77%) after one year (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). The median IFN-&#x3b3; RGE was 65% (IQR=40%-79%) at three months, 59% (IQR=40%-75%) at six months, and 70% (IQR=46%-81%) after one year (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). The median GM-CSF RGE was 30% (IQR=11%-54%) at three months, 28% (IQR=18%-45%) at six months, and 38% (IQR=21%-84%) after one year (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1C</bold>
</xref>). Overall, the median NFAT-RGE was 45% (IQR=23%-66%) at three months, 42% (IQR=28%-60%) at six months, and 50% (IQR=33%-86%) after one year (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1D</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Residual gene expression of IL-2 <bold>(A)</bold>, IFN-&#x3b3; <bold>(B)</bold>, GM-CSF <bold>(C)</bold> and NFAT-RGE <bold>(D)</bold> at three, six and 12 months after LT. Only significant p-values are shown (p&lt;0.05).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1382459-g001.tif"/>
</fig>
<p>Approximately 30% (n=9) of patients at three months, 30% (n=9) at six months, and 19% (n=9) at 12 months were considered to have high-grade immunosuppression based on NFAT-RGE analysis.</p>
<p>Comparison of clinical, demographic, and therapeutic characteristics between patients with overall high-grade immunosuppression (NFAT-RGE &lt;30%), calculated as the median value of all time-point determinations, and overall low-grade immunosuppression (NFAT-RGE &#x2265;30%), are shown in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. Strikingly, no differences were observed in C<sub>0</sub> tacrolimus levels (9.3 vs, 10.3, p = 0.265), but doses of tacrolimus (8.5 vs. 6, p&lt;0.001) and C<sub>1.5</sub> levels (31.2 vs. 20.7, p&lt;0.001) differed, being higher in patients with an NFAT-RGE &lt;30%. As expected, residual gene expression of each of the three different cytokines regulated by NFAT was significantly lower when NFAT-RGE was below 30%. GM-CSF residual gene expression was always the lowest, followed by IL-2 and IFN-&#x263; (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Clinical and demographic characteristics of the population, stratifying patients into high or low-grade immunosuppression according to their overall NFAT-RGE.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">Characteristic</th>
<th valign="middle" align="center">All patients</th>
<th valign="middle" align="center">Overall high-grade immunosuppression &lt;30% NFAT-RGE<break/>N=10</th>
<th valign="middle" align="center">Overall low-grade immunosuppression &#x2265;30% NFAT-RGE<break/>N=32</th>
<th valign="middle" align="center">P value</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">
<bold>Male gender n (%)</bold>
</td>
<td valign="middle" align="center">27 (64)</td>
<td valign="middle" align="center">2 (20)</td>
<td valign="middle" align="center">25 (78)</td>
<td valign="middle" align="center">
<bold>0.002</bold>
</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Age (years) median (IQR)</bold>
</td>
<td valign="middle" align="center">59 (31-68)</td>
<td valign="middle" align="center">61 (58-65)</td>
<td valign="middle" align="center">55 (47-61)</td>
<td valign="middle" align="center">0.090</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>BMI (kg/m<sup>2</sup>) median (IQR)</bold>
</td>
<td valign="middle" align="center">23 (21-25)</td>
<td valign="middle" align="center">22 (20-27)</td>
<td valign="middle" align="center">23 (21-25)</td>
<td valign="middle" align="center">0.787</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Double-LT n (%)</bold>
</td>
<td valign="middle" align="center">39 (93)</td>
<td valign="middle" align="center">8 (80)</td>
<td valign="middle" align="center">31 (97)</td>
<td valign="middle" align="center">0.136</td>
</tr>
<tr>
<td valign="middle" colspan="5" align="left">
<bold>Underlying lung disease</bold> n <bold>(%)</bold>
</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>&#x2003;Interstitial lung disease</bold>
</td>
<td valign="middle" align="center">22 (52)</td>
<td valign="middle" align="center">4 (40)</td>
<td valign="middle" align="center">18 (56)</td>
<td valign="middle" rowspan="5" align="center">0.716</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>&#x2003;COPD</bold>
</td>
<td valign="middle" align="center">14 (33)</td>
<td valign="middle" align="center">5 (50)</td>
<td valign="middle" align="center">9 (28)</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>&#x2003;Cystic fibrosis</bold>
</td>
<td valign="middle" align="center">4 (9)</td>
<td valign="middle" align="center">1 (10)</td>
<td valign="middle" align="center">3 (9)</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>&#x2003;Bronchiectasis</bold>
</td>
<td valign="middle" align="center">1 (2)</td>
<td valign="middle" align="center">0 (0)</td>
<td valign="middle" align="center">1 (3)</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>&#x2003;Pulmonary hypertension</bold>
</td>
<td valign="middle" align="center">1 (2)</td>
<td valign="middle" align="center">0 (0)</td>
<td valign="middle" align="center">1 (3)</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Corticosteroid doses (mg/day)</bold>
<break/>
<bold>median (IQR)</bold>
</td>
<td valign="middle" align="center">16 (15-24)</td>
<td valign="middle" align="center">20 (16-21)</td>
<td valign="middle" align="center">16 (12-24)</td>
<td valign="middle" align="center">0.213</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Mycophenolic acid doses (mg/day) median (IQR)</bold>
</td>
<td valign="middle" align="center">720 (360-1000)</td>
<td valign="middle" align="center">1000 (360-1000)</td>
<td valign="middle" align="center">720 (360-1000)</td>
<td valign="middle" align="center">0.275</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac doses (mg/day) median (IQR)</bold>
</td>
<td valign="middle" align="center">6.5 (5-8)</td>
<td valign="middle" align="center">8.5 (6-10)</td>
<td valign="middle" align="center">6 (4-8)</td>
<td valign="middle" align="center">
<bold>&lt;0.001</bold>
</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>0</sub> (ng/mL) median (IQR)</bold>
</td>
<td valign="middle" align="center">10.3 (8-12)</td>
<td valign="middle" align="center">9.3 (8-11)</td>
<td valign="middle" align="center">10.3 (8-12)</td>
<td valign="middle" align="center">0.264</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>1.5</sub> (ng/mL) median (IQR)</bold>
</td>
<td valign="middle" align="center">23.2 (15-31)</td>
<td valign="middle" align="center">31.2 (24-35)</td>
<td valign="middle" align="center">20.7 (14-26)</td>
<td valign="middle" align="center">
<bold>&lt;0.001</bold>
</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>IL-2-RGE (%) median (IQR)</bold>
</td>
<td valign="middle" align="center">42 (22-67)</td>
<td valign="middle" align="center">16 (9-20)</td>
<td valign="middle" align="center">54 (36-78)</td>
<td valign="middle" align="center">
<bold>&lt;0.001</bold>
</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>IFN-&#x3b3;-RGE (%) median (IQR)</bold>
</td>
<td valign="middle" align="center">62 (41-79)</td>
<td valign="middle" align="center">34 (28-39)</td>
<td valign="middle" align="center">71 (60-82)</td>
<td valign="middle" align="center">
<bold>&lt;0.001</bold>
</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>GM-CSF-RGE (%) median (IQR)</bold>
</td>
<td valign="middle" align="center">30 (17-56)</td>
<td valign="middle" align="center">8 (6-13)</td>
<td valign="middle" align="center">38 (28-73)</td>
<td valign="middle" align="center">
<bold>&lt;0.001</bold>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>IQR, Interquartile range; BMI, body mass index; LT, lung transplantation; COPD, Chronic obstructive pulmonary disease; NFAT-RGE, nuclear factor of activated T cells residual gene expression; Tac, tacrolimus; Comparisons between groups, Mann&#x2013;Whitney U-test for continuous variables; Chi-squared test for categorical variables. Bold value: statistically significant result (p&lt;0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Tacrolimus pharmacokinetics</title>
<p>The overall mean tacrolimus C<sub>0</sub> levels were 10.3 ng/mL &#xb1; 3.3 and decreased over time. At three months after LT, mean tacrolimus C<sub>0</sub> levels were 10.9 ng/mL &#xb1; 3.6, 10.8 ng/mL &#xb1; 3.1 at six months, and 8.5 ng/mL &#xb1; 2.11 at 12 months (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). Tacrolimus C<sub>0</sub> levels significantly decreased at 12 months compared to three months (p=0.015) and six months (p=0.026) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>).</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Tacrolimus mean concentrations (C<sub>0</sub> and C<sub>1.5</sub>) and doses at 3, 6, 12 months after transplantation and all time points.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left"/>
<th valign="middle" align="center">All time points<break/>N = 87 determinations</th>
<th valign="middle" align="center">3 months<break/>N = 33 determinations</th>
<th valign="middle" align="center">6 months<break/>N = 33 determinations</th>
<th valign="middle" align="center">12 months<break/>N = 21 determinations</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>0</sub>
</bold>
<break/>
<bold>(ng/mL) mean ( &#xb1; SD)</bold>
</td>
<td valign="middle" align="center">10.3 &#xb1; 3.3</td>
<td valign="middle" align="center">10.9 &#xb1; 3.6</td>
<td valign="middle" align="center">10.8 &#xb1; 3.1</td>
<td valign="middle" align="center">8.5 &#xb1; 2.1</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>1.5</sub>
</bold>
<break/>
<bold>(ng/mL) mean ( &#xb1; SD)</bold>
</td>
<td valign="middle" align="center">23.2 &#xb1; 9.7</td>
<td valign="middle" align="center">25.7 &#xb1; 11.2</td>
<td valign="middle" align="center">23.8 &#xb1; 8.3</td>
<td valign="middle" align="center">18.4 &#xb1; 7.5</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac doses</bold>
<break/>
<bold>(mg/day) mean ( &#xb1; SD)</bold>
</td>
<td valign="middle" align="center">6.6 &#xb1; 2.7</td>
<td valign="middle" align="center">7.6 &#xb1; 2.4</td>
<td valign="middle" align="center">6.2 &#xb1; 2.6</td>
<td valign="middle" align="center">5.1 &#xb1; 2.4</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Tac, tacrolimus; SD, Standard deviation; C<sub>0</sub>, Tacrolimus trough or predose concentration; C<sub>1.5</sub>, Tacrolimus concentration 1.5 h postdose.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Tacrolimus C<sub>0</sub> <bold>(A)</bold> and C<sub>1.5</sub> <bold>(B)</bold> concentrations, and tacrolimus doses <bold>(C)</bold> at three, six and 12 months after LT. Only significant p-values are shown. significant result (p&lt;0.05)</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1382459-g002.tif"/>
</fig>
<p>The overall mean tacrolimus C<sub>1.5</sub> level was 23.2 ng/mL &#xb1; 9.7 and tended to decrease over time. At three months after LT, mean C<sub>1.5</sub> levels were 25.7 ng/mL &#xb1; 11.2, 23.8 ng/mL &#xb1; 8.3 at six months, and 18.4 ng/mL &#xb1; 7.5 at 12 months. Tacrolimus C<sub>1.5</sub> levels were significantly lower at 12 months than at three months (p=0.018) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>).</p>
<p>The overall mean tacrolimus dose was 6.5 mg/day &#xb1; 2.7 and also decreased over time. At three months after LT, mean doses were 7.6 mg/day &#xb1; 2.4, 6.2 mg/day &#xb1; 2.6 at six months, and 5.1 mg/day &#xb1; 2.4 at 12 months. Tacrolimus doses were significantly lower at 12 months than at three months (p=0.002) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>).</p>
<p>Almost 60% (n=51) of the measurements were outside the tacrolimus therapeutic range (10-15 ng/mL); of those, 12% (n=6) were above the range. Approximately 20% of the measurements that would today be considered within the therapeutic range actually represented a high degree of immunosuppression according to NGAT-RGE. Surprisingly, NFAT-RGE &lt;30% was found in only one out of six measurements above the therapeutic range (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>).</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Classification of determinations based on their NFAT-RGE and tacrolimus C<sub>0</sub> concentrations.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left"/>
<th valign="middle" align="center">All determinations</th>
<th valign="middle" align="center">NFAT-RGE&lt;30%<break/>(n=22)</th>
<th valign="middle" align="center">NFAT-RGE&#x2265;30%<break/>(n=65)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>0</sub>&lt;10 ng/mL n (%)</bold>
<break/>
<bold>Under-immunosuppression</bold>
</td>
<td valign="middle" align="center">45 (52)</td>
<td valign="middle" align="center">14 (31)</td>
<td valign="middle" align="center">31 (69)</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>0</sub> 10-15 ng/mL n (%)</bold>
<break/>
<bold>Therapeutic range</bold>
</td>
<td valign="middle" align="center">36 (41)</td>
<td valign="middle" align="center">7 (19)</td>
<td valign="middle" align="center">29 (81)</td>
</tr>
<tr>
<td valign="middle" align="left">
<bold>Tac C<sub>0</sub>&gt;15 ng/mL n (%)</bold>
<break/>
<bold>Over-immunosuppression</bold>
</td>
<td valign="middle" align="center">6 (7)</td>
<td valign="middle" align="center">1 (17)</td>
<td valign="middle" align="center">5 (83)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Tac, tacrolimus; C<sub>0</sub>, tacrolimus trough or predose concentration; C<sub>1.5</sub>, Tacrolimus concentration 1.5 h postdose.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>NFAT-RGE and tacrolimus pharmacokinetics</title>
<p>Tacrolimus C<sub>0</sub> levels showed a moderate correlation with C<sub>1.5</sub> levels (r=0.410, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). Tacrolimus C<sub>0</sub> levels did not correlate with any of the three NFAT-regulated genes, analyzed either separately or overall (r=-0.069, p=0.524) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). Tacrolimus doses showed a moderate correlation with NFAT-RGE analyzed separately or overall (r=-0.441, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Linear correlations between tacrolimus C<sub>0</sub> vs. C<sub>1.5</sub> <bold>(A)</bold>, tacrolimus C<sub>0</sub> vs. NFAT-RGE <bold>(B)</bold>, tacrolimus doses vs. NFAT-RGE <bold>(C)</bold>, tacrolimus C<sub>1.5</sub> vs. NFAT-RGE <bold>(D)</bold>, tacrolimus C<sub>1.5</sub> vs. IL2-RGE <bold>(E)</bold>, tacrolimus C<sub>1.5</sub> vs. IFN&#x3b3;-RGE <bold>(F)</bold>, tacrolimus C<sub>1.5</sub> vs. GM-CSF-RGE <bold>(G)</bold>, NFAT-RGE vs. tacrolimus difference (C<sub>1.5</sub>-C<sub>0</sub>) <bold>(H)</bold>, and NFAT-RGE vs. tacrolimus increase (ratio calculated as C<sub>1.5</sub>/<sub>C0</sub>) <bold>(I)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1382459-g003.tif"/>
</fig>
<p>Nevertheless, NFAT-RGE showed a strong negative correlation with tacrolimus C<sub>1.5</sub> levels both overall (r=-0.719, 95% CI -0.8095 to -0.5950 p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>) and separately: IL-2 (r=-0.731, 95% CI -0.818 to -0.611, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3E</bold>
</xref>), IFN-&#x3b3; (r=-0.627, 95% CI&#xa0;-0.743 to -0.475, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3F</bold>
</xref>), and GM-CSF (r=-0.733, 95% CI -0.819 to -0.613, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3G</bold>
</xref>).</p>
<p>Moreover, NFAT-RGE presented a negative correlation with the tacrolimus difference measured as C<sub>1.5</sub>-C<sub>0</sub> (r=-0.772, 95% CI&#xa0;-0.847 to -0.666, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3H</bold>
</xref>) or as an increase (ratio), C<sub>1.5</sub>/C<sub>0</sub> (r=-0.735, 95% CI -0.821 to -0.616, p&lt;0.001) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3I</bold>
</xref>).</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>NFAT-RGE and its correlation with corticosteroids and mycophenolic acid</title>
<p>When classifying patients according to their NFAT-RGE, there were no statistically significant differences in corticosteroid or mycophenolic acid doses (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Nor was there a correlation between corticosteroid doses (r=-0.175, 95% CI -0.377 to 0.043, p=0.081) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>) or mycophenolic acid doses (r=-0.257, 95% CI -0.4491 to -0.043, p=0.016) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>) and NFAT-RGE.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Linear correlations between corticosteroid doses vs. NFAT-RGE <bold>(A)</bold> and mycophenolic acid doses vs. NFAT-RGE <bold>(B)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1382459-g004.tif"/>
</fig>
<p>However, when we split the determinations between those taken under methylprednisolone (n=11) and prednisone (n=76), we observed a very strong correlation between prednisone doses and NFAT-RGE (r=-0.84; p=0.002), but the correlation is non-existent when relating methylprednisolone and NFAT-RGE (r=-0.08; p=0.502).</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<p>Despite tacrolimus being a cornerstone of immunosuppressive treatment in LTR, optimizing doses remains challenging due to its high inter- and intra-individual variability. Tacrolimus monitoring aims to balance efficacy, attempting to prevent chronic lung allograft dysfunction without increasing the risk of infections and malignancies. Currently, monitoring is based solely on tacrolimus trough blood levels, yet this pharmacokinetic measurement appears insufficient as it does not reflect the patient&#x2019;s actual immunosuppressive state. Previous studies have demonstrated the usefulness of measuring NFAT-RGE in clinical trials monitoring kidney, liver, and heart transplant recipients (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B12">12</xref>). Moreover, this assay has proven highly reproducible and feasible in routine molecular biological laboratories (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B9">9</xref>&#x2013;<xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B20">20</xref>), suggesting its potential integration into current clinical practice. However, the value of this pharmacodynamic tool in LTR remains unclear (<xref ref-type="bibr" rid="B19">19</xref>).</p>
<p>In our study, we observed that tacrolimus drug monitoring based on C<sub>0</sub> blood levels does not correlate with the level of immunosuppression measured by NFAT-RGE; nearly 24% of patients had a median NFAT-RGE &lt;30%. Consistent with previous studies, we also found that NFAT-RGE correlated better with tacrolimus peak concentrations than with trough concentrations (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B21">21</xref>).</p>
<p>NFAT-RGE levels below 30% generally indicate a high degree of immunosuppression, as an increased probability of infection and neoplasia has been observed (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B22">22</xref>, <xref ref-type="bibr" rid="B23">23</xref>). For instance, Sommerer et&#xa0;al. (<xref ref-type="bibr" rid="B5">5</xref>) demonstrated that patients with minimal or NFAT-RGE&lt;30% had significantly more infections and malignancies, whereas patients with insufficient inhibition suffered more acute rejections. Similarly, in an LTR cohort, Greenland et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>) observed that pulmonary infections detected by bronchoscopy were more common with NFAT-RGE&lt;40%.</p>
<p>Regarding graft rejection, most studies have focused on acute rather than chronic rejection episodes in other solid organ transplants. Sommerer et&#xa0;al. (<xref ref-type="bibr" rid="B5">5</xref>) showed that only 1.3% of patients with an NFAT-RGE &lt;30% developed biopsy-proven acute rejection compared to 25.2% of those with NFAT-RGE&#xa0;&gt;30%. Similarly, Mill&#xe1;n et&#xa0;al. (<xref ref-type="bibr" rid="B24">24</xref>) demonstrated higher NFAT-RGE levels in patients with T cell-mediated acute rejection (75% [42-100%]) or subclinical cellular rejection (41% [18-78%]) compared with patients without these events (14% [2-23%]). Several other publications reported similar results with tacrolimus (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B5">5</xref>) and or cyclosporine (<xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B23">23</xref>). However, in the case of LTR, Greenland et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>) did not observe a correlation between higher NFAT-RGE levels and lung allograft acute rejection.</p>
<p>In our study, when classifying patients by their degree of immunosuppression according to NFAT-RGE results, corticoid or mycophenolic acid doses did not show significant differences. Moreover, there was no correlation between corticosteroid doses or mycophenolic acid doses and NFAT-RGE. According to Sommerer et&#xa0;al. (<xref ref-type="bibr" rid="B5">5</xref>), NFAT-RGE seems to be affected by tacrolimus but not by corticosteroids or mycophenolic acid. However, Greenland et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>) did observe a significant negative correlation between prednisone and NFAT-RGE. The differences observed between studies regarding the effect of corticosteroids on NFAT-RGE may be attributed to the specific type of corticosteroid administered to patients, as observed in our study when samples were categorized based on the type of corticosteroids used. In the study by Greenland et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>), patients were administered prednisone, whereas in our study, only 13% (n=11) of all determinations were analyzed under prednisone intake, with methylprednisolone being the most commonly used corticosteroid. Besides, in the study by Sommerer et&#xa0;al. (<xref ref-type="bibr" rid="B5">5</xref>), patients were administered methylprednisolone.</p>
<p>In accordance with the protocols, the doses of immunosuppressants are gradually reduced over time after transplantation. In our cohort, tacrolimus doses, as well as tacrolimus trough and peak blood levels, were significantly lower at 12 months compared to three months after LT. In the study by Sommerer et&#xa0;al. (<xref ref-type="bibr" rid="B3">3</xref>) tacrolimus doses in kidney transplant recipients increased from day 7 to month 2 and then stabilized. The difference could be explained by the lower tacrolimus trough levels required by kidney transplant recipients required compared to LTR.</p>
<p>In our study, the total residual expression of NFAT-RGE and of each gene individually increased over time, although not significantly, perhaps due to the changing sample size between 3-6 months and 12 months, or to the fact that the earliest time point tested was three months. In this context, Greenland et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>) observed in the early post-LT period that NFAT-RGE increased by 0.35% (95% CI 0.001-0.69%, p = 0.049) per week.</p>
<p>Regarding the therapeutic range of tacrolimus C<sub>0</sub>, almost 20% of the determinations in the therapeutic range in this study had an NFAT-RGE &lt;30%, meaning that some patients with optimal trough tacrolimus concentrations were actually exposed to high-grade immunosuppression and might benefit from a dose reduction. Thus, adding the measurement of NFAT-RGE might improve drug monitoring.</p>
<p>The utility of NFAT-RGE as an add-on to pharmacokinetic drug monitoring with calcineurin inhibitor dose adjustment has already been explored in other solid organ transplants. Sommerer et&#xa0;al. (<xref ref-type="bibr" rid="B6">6</xref>) published a prospective, randomized clinical trial (1:1) in 54 stable patients after kidney transplant and observed that the group of patients whose cyclosporine dose was adjusted by NFAT-RGE monitoring had fewer infections, better renal function, and less arterial stiffness than those monitored in the conventional way (<xref ref-type="bibr" rid="B6">6</xref>). Similar studies in LT would be very useful. The main problem regarding their performance is the need to establish the optimal NFAT-RGE cut-off in this organ &#x2013; that is to say, the grade of immunosuppression that presents an idea balance between the risk of infection and the risk of acute rejection or chronic graft dysfunction. This NFAT-RGE cut-off point will probably be different from that used in other types of transplants since the risk of infection in LT is significantly higher. In fact, Greenland et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>) found that the best cut-off in their LT cohort was 40% rather than the 30% used in all the other studies performed in kidney, liver and heart transplantation (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B12">12</xref>). More prospective studies with LTR stratifying the risk of infection and rejection according to NFAT-RGE determination seem necessary to confirm the optimal NFAT-RGE in LTR.</p>
<p>This study is part of a larger project assessing clinical outcomes 18 months after surgery. These data are no yet available; thus, one of the main limitations of this study is that at present we cannot link the NFAT-RGE results with the occurrence of infections in this population. Additionally, the sample size is small, and the data are derived from a single center.</p>
<p>Further clinical studies in larger LTR cohorts should assess whether this pharmacodynamic tool can predict patients at higher risk of developing infections, acute rejections, malignancies, and chronic lung allograft dysfunction, which is the main cause of graft loss within a year of lung transplantation and affects 41% of LTR patients within five years (<xref ref-type="bibr" rid="B25">25</xref>). Moreover, investigating whether NFAT-RGE determination could be useful in complex scenarios involving patients with recurrent infections taking apparently low immunosuppressant doses would be of interest.</p>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusions</title>
<p>Tacrolimus trough levels, currently used for therapeutic drug monitoring, did not correlate with the degree of immunosuppression measured by NFAT-RGE in LTR. However, peak levels showed a moderate correlation. A significant percentage of patients exhibited high levels of immunosuppression based on NFAT-RGE, despite being within the therapeutic range for tacrolimus. Incorporating NFAT-RGE measurement and tacrolimus peak levels into current pharmacokinetic monitoring may assist physicians in adjusting tacrolimus doses. Nevertheless, further studies are needed to establish optimal NFAT-RGE cut-offs in LTR to prevent infection and rejection events.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s7" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The studies involving humans were approved by Vall d&#x2019;Hebron University Hospital&#x2019;s ethics committee. The studies were conducted in accordance with the local legislation and institutional requirements. The participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>MB-P: Formal analysis, Investigation, Methodology, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. VRM: Investigation, Writing &#x2013; review &amp; editing. ME: Investigation, Writing &#x2013; review &amp; editing. PU: Investigation, Writing &#x2013; review &amp; editing. MA: Investigation, Writing &#x2013; review &amp; editing. RC Investigation, Writing &#x2013; review &amp; editing. SR: Investigation, Writing &#x2013; review &amp; editing. RE-F: Investigation, Writing &#x2013; review &amp; editing. ER-L: Investigation, Writing &#x2013; review &amp; editing. CB: Investigation, Writing &#x2013; review &amp; editing. BS-G: Investigation, Writing &#x2013; review &amp; editing. MZ-O: Investigation, Writing &#x2013; review &amp; editing. YV-O: Investigation, Writing &#x2013; review &amp; editing. JV-B: Investigation, Writing &#x2013; review &amp; editing. VM: Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. SG-O: Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing.</p>
</sec>
</body>
<back>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. The project received funding from the Instituto de Salud Carlos III (ISCIII) under the project &#x201c;PI18/00770&#x201d; (Co-funded by European Regional Development Fund; &#x201c;A way to make Europe&#x201d;) and the Air Liquide Foundation. The funders were not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication.</p>
</sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
<p>The reviewer OM declared a shared affiliation, with no collaboration, with some of the authors CB, VM, SG-O to the handling editor at the time of the review.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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