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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2024.1342086</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>NSCLC: from tumorigenesis, immune checkpoint misuse to current and future targeted therapy</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Raskova Kafkova</surname>
<given-names>Leona</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2573929"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mierzwicka</surname>
<given-names>Joanna M.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2641086"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chakraborty</surname>
<given-names>Prosenjit</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2641137"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jakubec</surname>
<given-names>Petr</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fischer</surname>
<given-names>Ondrej</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2623506"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Skarda</surname>
<given-names>Jozef</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2169448"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Maly</surname>
<given-names>Petr</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Raska</surname>
<given-names>Milan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/840358"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
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</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Immunology, Faculty of Medicine and Dentistry, Palacky University Olomouc</institution>, <addr-line>Olomouc</addr-line>, <country>Czechia</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Immunology, University Hospital Olomouc</institution>, <addr-line>Olomouc</addr-line>, <country>Czechia</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Laboratory of Ligand Engineering, Institute of Biotechnology of the Czech Academy of Sciences</institution>, <addr-line>Vestec</addr-line>, <country>Czechia</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of Respiratory Diseases and Tuberculosis, University Hospital Olomouc</institution>, <addr-line>Olomouc</addr-line>, <country>Czechia</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Institute of Clinical and Molecular Pathology, Faculty of Medicine and Dentistry, Palacky University Olomouc</institution>, <addr-line>Olomouc</addr-line>, <country>Czechia</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Department of Pathology, University Hospital Ostrava and Faculty of Medicine, University of Ostrava</institution>, <addr-line>Ostrava</addr-line>, <country>Czechia</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Ioannis Vathiotis, National and Kapodistrian University of Athens, Greece</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Georgii Vasiukov, Vanderbilt University, United States</p>
<p>Maria Effrosyni Livanou, National and Kapodistrian University of Athens, Greece</p>
<p>Kenji Morimoto, Kyoto Prefectural University of Medicine, Japan</p>
<p>Afshan Fathima Nawas, University of Texas Southwestern Medical Center, United States</p>
<p>Prachi Jain, Deaconess Henderson Hospital, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Milan Raska, <email xlink:href="mailto:milan.raska@upol.cz">milan.raska@upol.cz</email>; Leona Raskova Kafkova, <email xlink:href="mailto:leona.raskova@upol.cz">leona.raskova@upol.cz</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>07</day>
<month>02</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1342086</elocation-id>
<history>
<date date-type="received">
<day>21</day>
<month>11</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>17</day>
<month>01</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Raskova Kafkova, Mierzwicka, Chakraborty, Jakubec, Fischer, Skarda, Maly and Raska</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Raskova Kafkova, Mierzwicka, Chakraborty, Jakubec, Fischer, Skarda, Maly and Raska</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Non-small cell lung cancer (NSCLC) is largely promoted by a multistep tumorigenesis process involving various genetic and epigenetic alterations, which essentially contribute to the high incidence of mortality among patients with NSCLC. Clinical observations revealed that NSCLC also co-opts a multifaceted immune checkpoint dysregulation as an important driving factor in NSCLC progression and development. For example, a deregulated PI3K/AKT/mTOR pathway has been noticed in 50-70% of NSCLC cases, primarily modulated by mutations in key oncogenes such as ALK, EGFR, KRAS, and others. Additionally, genetic association studies containing patient-specific factors and local reimbursement criteria expose/reveal mutations in EGFR/ALK/ROS/BRAF/KRAS/PD-L1 proteins to determine the suitability of available immunotherapy or tyrosine kinase inhibitor therapy. Thus, the expression of such checkpoints on tumors and immune cells is pivotal in understanding the therapeutic efficacy and has been extensively studied for NSCLC treatments. Therefore, this review summarizes current knowledge in NSCLC tumorigenesis, focusing on its genetic and epigenetic intricacies, immune checkpoint dysregulation, and the evolving landscape of targeted therapies. In the context of current and future therapies, we emphasize the significance of antibodies targeting PD-1/PD-L1 and CTLA-4 interactions as the primary therapeutic strategy for immune system reactivation in NSCLC. Other approaches involving the promising potential of nanobodies, probodies, affibodies, and DARPINs targeting immune checkpoints are also described; these are under active research or clinical trials to mediate immune regulation and reduce cancer progression. This comprehensive review underscores the multifaceted nature, current state and future directions of NSCLC research and treatment.</p>
</abstract>
<kwd-group>
<kwd>PD-1</kwd>
<kwd>PD-L1</kwd>
<kwd>immune checkpoint</kwd>
<kwd>NSCLC</kwd>
<kwd>CTLA-4</kwd>
<kwd>targeted therapy</kwd>
</kwd-group>
<contract-num rid="cn001">NU21-03-00372</contract-num>
<contract-num rid="cn002">CEREBIT CZ. 02.1.01/0.0/0.0/16_025/0007397</contract-num>
<contract-num rid="cn003">IGA_LF_2023_010</contract-num>
<contract-sponsor id="cn001">Ministerstvo Zdravotnictv&#xed; Cesk&#xe9; Republiky<named-content content-type="fundref-id">10.13039/501100003243</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">Ministerstvo &#x160;kolstv&#xed;, Ml&#xe1;de&#x17e;e a T&#x11b;lov&#xfd;chovy<named-content content-type="fundref-id">10.13039/501100001823</named-content>
</contract-sponsor>
<contract-sponsor id="cn003">Univerzita Palack&#xe9;ho v Olomouci<named-content content-type="fundref-id">10.13039/501100007059</named-content>
</contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="179"/>
<page-count count="20"/>
<word-count count="10267"/>
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<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Cancer Immunity and Immunotherapy</meta-value>
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</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Lung cancer is one of the most frequently diagnosed tumors (2023: 12.5% of all cancers) and the most common cause of death in cancer diagnoses worldwide (2023: 21% of the total number of cancer deaths) (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>). It is the second most prevalent cancer in women and the most frequent cancer in men worldwide.</p>
<p>Lung cancer development is a heterogeneous and multi-step process that involves several genetic and epigenetic alterations, which are necessary for tumor cell turnover and evasion of the immune system surveillance allowing cancer progression and metastasis. Non-small cell lung cancer (NSCLC) is one of the two main types of lung cancers and covers approximately 80&#x2013;85% of all lung cancer cases. The NSCLC could be divided into squamous cell carcinoma, adenocarcinoma, and large cell carcinoma, and rare types such as adenosqamous carcinoma, large cell neuroendocrine carcinoma, etc. (<xref ref-type="bibr" rid="B3">3</xref>), based on the type of tumor cells and typical histological features. This review focuses on immune checkpoint disability participating in the NSCLC development and immune checkpoint inhibitors (ICI) therapy.</p>
<sec id="s1_1">
<title>Clinical aspects of NSCLC</title>
<p>Early diagnosis of lung cancer is difficult since symptoms are not specific and can be present in a wide range of other disease conditions. The early stages are often asymptomatic, so lung cancer is frequently diagnosed in its advanced stages, commonly associated with metastases. Adenocarcinoma tends to be found earlier. NSCLC metastases are unfavorable prognostic factors associated with shorter survival. Approximately 30&#x2013;40% of patients are diagnosed with metastatic stage of NSCLC (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B5">5</xref>). Disseminating tumor cells (DTCs) (<xref ref-type="bibr" rid="B6">6</xref>) escape immune elimination mechanisms and spread via the lymphatic system or the bloodstream (<xref ref-type="bibr" rid="B7">7</xref>). To survive in the circulation, DTCs could escape immune elimination (e.g. by NK cells) using a protective &#x2018;platelet coat&#x2019; formed from adherent activated platelets (<xref ref-type="bibr" rid="B8">8</xref>). Typically, bones are detected as common sites of NSCLC metastases, followed by the brain, liver and adrenal glands. 25-40% of NSCLC patients develop brain metastases during the disease within the first 2 years after diagnosis of the primary tumor (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>). Liver metastases at the time of diagnosis or before starting chemotherapy are associated with a poor prognosis. The liver is a highly immunosuppressive environment, which can tolerate the presence of antigens without activating the immune response. This could lead to ineffective local responses to immunotherapy (<xref ref-type="bibr" rid="B11">11</xref>). Thus, different metastatic sites (organs) may exhibit different responses to ICI therapy due to other immune signaling within the tumor microenvironment (TME) (<xref ref-type="bibr" rid="B12">12</xref>).</p>
<p>According to the 7<sup>th</sup> edition of TNM classification of lung cancers issued by the American Joint Committee on Cancer (AJCC) (<xref ref-type="bibr" rid="B13">13</xref>), different stages of NSCLC can be defined in terms of TNM staging system, assessing primary tumor size (marked as T1 to T4), the propagation of tumor into lymph nodes (N0-N3) and the presence (M1) or absence (M0) of metastasis. The TNM 9<sup>th</sup> edition is the current classification of lung cancer and is crucial for the choice of therapeutic approaches and is of prognostic significance (<xref ref-type="bibr" rid="B14">14</xref>). The treatment of lung cancer depends on the histological type, stage, condition and comorbidities of the patient, as well as on predictive markers and tumor genetics (<xref ref-type="bibr" rid="B15">15</xref>). Stages I-IIIA are considered operable. From stage IIA on, adjuvant chemotherapy is indicated. In the presence of risk factors, adjuvant chemotherapy is also indicated for stage IB. Inoperable cases are treated with radiotherapy and from stage IIA onwards, chemoradiotherapy is recommended, both sequentially and concomitantly. Stage III is a very heterogeneous group of patients (<xref ref-type="bibr" rid="B16">16</xref>). These patients should be assessed by an interdisciplinary indication board. For example, in operable patients, a decision about the choice of therapy has to be made based on the patient&#x2019;s clinical situation, organ functions, other illnesses and the location/extent of the disease. Primary surgical resection is indicated when possible and safe, either with or without adjuvant chemotherapy. Certain subsets of patients benefit from adjuvant tyrosine kinase inhibitors (TKIs) therapy (osimertinib in EGFR-mutated NSCLC (<xref ref-type="bibr" rid="B17">17</xref>)) or alectinib in ALK-mutated NSCLC (<xref ref-type="bibr" rid="B18">18</xref>), or adjuvant immunotherapy with immune-checkpoint inhibitors (ICI). In case of extensive N2 noda involvement, an adjuvant radiotherapy is considered (<xref ref-type="bibr" rid="B19">19</xref>). Recent studies also show potentially large benefits of neoadjuvant chemoimmunotherapy, sometimes supplemented with adjuvant therapy (perioperative therapy). The inoperable stage III is treated with concomitant or sequential chemoradiotherapy (<xref ref-type="bibr" rid="B20">20</xref>), or palliatively with stage IV regimens (when radiotherapy is not possible). Therapy with ICI became a real breakthrough in the field of stage IV treatment since a group of patients, receiving this treatment survived for a long time, and some of them reached permanent remission (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B22">22</xref>). Deciphering the complexity of immune response to tumor cells may lead to a more detailed characterization of mechanisms that apply to initial or secondary tumor resistance to ICI, which will allow future, more accurate identification of patients potentially benefiting from ICI treatment and the development of new drugs blocking the emergence of secondary or even primary tumor resistance.</p>
</sec>
<sec id="s1_2">
<title>Genomic aberration in NSCLC</title>
<p>Genomic instability is a hallmark of all cancers. Acquired genetic alterations are tightly associated with an increased proliferation rate based on the mutation burden of tumor suppressors and oncogenes involved in signaling pathways regulating cell division. The PI3K/AKT/mTOR pathway is deregulated in 50-70% of NSCLC (<xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B24">24</xref>) by a <italic>variety</italic> of mechanisms including activating mutations in Anaplastic lymphoma kinase (<italic>ALK</italic>), Epidermal growth factor receptor (<italic>EGFR</italic>), Kirsten rat sarcoma viral oncogene homolog (<italic>KRAS</italic>), Phosphoinositide 3-kinase (<italic>PI3K</italic>), or protein kinase B (<italic>AKT</italic>) (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B25">25</xref>), by <italic>PIK3CA</italic> amplification, or by the loss of negative regulation through the tumor suppressor gene <italic>PTEN</italic> (<xref ref-type="bibr" rid="B26">26</xref>).</p>
<p>The common oncogenic driver in NSCLC is <italic>EGFR</italic> proto-oncogene (<xref ref-type="bibr" rid="B27">27</xref>&#x2013;<xref ref-type="bibr" rid="B29">29</xref>). Patients diagnosed with classical EGFR mutations, i.e., L858R or exon 19 deletions (Ex19del), were noticed for substantial improvements in clinical outcomes after treatment with first-, second-, or third-generation of TKIs (<xref ref-type="bibr" rid="B29">29</xref>, <xref ref-type="bibr" rid="B30">30</xref>). Genetic mutations and their overexpression in <italic>EGFR</italic> often result in constitutive activation of tyrosine kinases (<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B31">31</xref>), which causes deregulation of PI3K/AKT/mTOR, RAS/RAF/MEK/ERK and JAK/STAT signaling pathways. Recent studies have also associated the EGFR expression in NSCLC with frequent lymph node metastasis, poor chemosensitivity (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B33">33</xref>) and reduced survival rate (<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B31">31</xref>).</p>
<p>Tumor suppressor genes (TSG), that are regularly inactivated in NSCLC, are tumor protein p53 (<italic>TP53)</italic>, cyclin-dependent kinase inhibitor 2A (<italic>CDKN2A</italic>), fragile histidine triad protein (<italic>FHIT</italic>), Ras association domain family protein1 isoform A (<italic>RASSF1A</italic>), Phosphatase and Tensin Homolog (<italic>PTEN</italic>), retinoblastoma 1 (<italic>RB1</italic>), and serine-threonine kinase 11 (<italic>STK11</italic>) (<xref ref-type="bibr" rid="B25">25</xref>). Among these, <italic>TP53</italic> has most often been noted for carrying substantial genetic alterations, i.e., hemizygous deletion of 17p13, occurring in 65% of NSCLCs (<xref ref-type="bibr" rid="B34">34</xref>). <italic>RB1</italic>, the first TSG described in lung cancer (<xref ref-type="bibr" rid="B35">35</xref>), is deactivated in 10-15% of NSCLC. ALK was initially identified as a fusion protein EML4-ALK (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>), present as a rearrangement mutation in 5% of patients with NSCLC (<xref ref-type="bibr" rid="B38">38</xref>), and was marked as a driver tumor mutation in NSCLC. Patients diagnosed with ALK fusion protein, which is constitutively active, are highly sensitive to ALK inhibitors such as Alectinib, Ceritinib, and Crizotinib (<xref ref-type="bibr" rid="B39">39</xref>). Moreover, ALK was reported to cause the activation of multiple signaling pathways, including PI3K/AKT, JAK/STAT, MEKK2/3, and MAPK pathways leading to enhanced proliferation (<xref ref-type="bibr" rid="B40">40</xref>). Increased proliferation rate is not only based on the accumulation of genomic mutations but is also related to increased telomerase activity, which is augmented in 80% of NSCLCs. Telomerases promote the progression of tumors by maintaining the telomeres above a critically short length, which results in apoptosis inhibition. The development and progression of NSCLC are further connected with aberrant DNA methylation, which can epigenetically modify gene expression (<xref ref-type="bibr" rid="B41">41</xref>). A combination of methylation loci can be taken as a prognostic signature for NSCLC. For instance, 17 methylation loci are identified in 13 genes, which were previously reported to be involved in lung cancer tumorigenesis (<xref ref-type="bibr" rid="B42">42</xref>).</p>
<p>The tumor mutation burden (TMB) is the number of genetic mutations found in the DNA of cancer cells. It is known that the number of mutations can vary across different tumor types. Tumors with a high mutation burden have the potential to generate a larger number of neoantigens, making them more immunogenic TMB numbers may be a useful biomarker for immunotherapy treatments for advanced cancer patients. However, TMB testing is problematic for several reasons: insufficient studies verifying tumors for which this testing is useful; TMB screening is expensive, making this screening unavailable to most patients; and tumors with low TMB may develop high TMB in response to the used chemotherapy (<xref ref-type="bibr" rid="B43">43</xref>).</p>
</sec>
<sec id="s1_3">
<title>Immune system and its role in NSCLC</title>
<sec id="s1_3_1">
<title>Activation of the immune system by tumor cells</title>
<p>Tumor cells are recognized by T cells (<xref ref-type="bibr" rid="B44">44</xref>&#x2013;<xref ref-type="bibr" rid="B46">46</xref>) through tumor-specific antigens (TSA) and tumor-associated antigens (TAA) (<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B48">48</xref>). TSAs are neoantigens, that are entirely absent in normal tissues and thus not tolerated by the immune system. Karasaki et&#xa0;al. (<xref ref-type="bibr" rid="B49">49</xref>) found in a group of NSCLC patients that a median of 46 potential neoantigens (pNeoAgs) are generated per one adenocarcinoma patient and 95.5 pNeoAgs per one squamous cell carcinoma (SCC) patient (<xref ref-type="bibr" rid="B50">50</xref>). Selection pressures from a diverse TME further affect neoantigen presentation, allowing immune escape and the clinical progression in NSCLC (<xref ref-type="bibr" rid="B50">50</xref>, <xref ref-type="bibr" rid="B51">51</xref>). In contrast, TAAs refer to antigen molecules present on both tumor and some normal cells at various stages of development, maturation, or activation. In general, tumor cells express higher TAA levels in comparison to most normal tissues. The most frequently recognized TAAs in NSCLC patients are Aurora kinase A, p53, HER2/neu, and NY-ESO-1. DESTINY-Lung02 demonstrated deep and durable antitumor responses of Trastuzumab deruxtecan in patients with mutated <italic>HER2</italic> NSCLC (<xref ref-type="bibr" rid="B52">52</xref>).</p>
<p>Previous studies have shown that T cell responses against one or more of these most common TAAs have significantly improved relapse-free survival in NSCLC patients (<xref ref-type="bibr" rid="B46">46</xref>), which could be attributed to tumor cell apoptosis induced by cytotoxic T lymphocyte (CTL), a main subset of tumor-infiltrating lymphocytes (TILs) (<xref ref-type="bibr" rid="B53">53</xref>). The TILs count was considerably linked with improved survival as well as tumor grade, size, vascular invasion, and stage of tumor differentiation in NSCLC (<xref ref-type="bibr" rid="B54">54</xref>). Additionally, the presence of TILs in the early of NSCLC was linked with an improvement in survival rate and reduced risk of systemic recurrence (<xref ref-type="bibr" rid="B55">55</xref>).</p>
<p>Recognition of tumor cells by the synergistic action of tumor antigen-specific and innate immunity could induce either complete or partial tumor elimination, with some tumor cells becoming dormant. The tumor dormancy is described as the equilibrium phase during which tumor cell outgrowth is inhibited by the activity of T cells, IL-12 and IFN-&#x3b3;, indicating the dominant contribution of adaptive immunity. The tumor cells could remain in the equilibrium phase through the rest of the subject&#x2019;s life. Nevertheless, constant immune pressure, particularly on genetically unstable tumor cells, could lead to the emergence of tumor cells, which are no longer controllable by the immune system, leading to the tumor escape phase with clinically manifested disease. The tumor cells escape due to either a) the loss of TAA or TSA expression or by deviations in antigen processing or presentation by tumor cells, b) the loss of sensitivity of tumor cells to immune-induced cell-elimination mechanisms, including overexpression of antiapoptotic proteins BCL2 and STAT3, or c) immunosuppressive action of TME (<xref ref-type="bibr" rid="B56">56</xref>). The suppression of the immune system could be mediated within the TME by a) inhibitory action of tumor and stromal cell-surface expressed receptors (immune checkpoints such as PD-1/PD-L1, suppressive major histocompatibility molecules HLA-E/G, ectoenzymes CD39/73, thrombospondin receptor (CD47), IL-2 receptor &#x3b2; subunit (CD122), or CD155) or by secreted factors, such as interleukin-10 (IL-10), and transforming growth factor-&#x3b2; (TGF-&#x3b2;), or b) by tumor-mediated attraction of immunosuppressive cell populations such as Treg cells, myeloid-derived suppressor cells (MDSC) of either monocytic or polymorphonuclear lineage, tumor-associated macrophages (TAMs), or tumor-associated neutrophils (TANs). Such immune cells could be attracted by a disturbance in the expression of many cytokines, chemokines and adhesive molecules within the TME (<xref ref-type="bibr" rid="B57">57</xref>&#x2013;<xref ref-type="bibr" rid="B59">59</xref>). Treg cells, as one of the most discussed regulatory/immunosuppressive populations within TME, can inhibit the proliferation and activity of tumor-specific Th cells and CTL and NK cells by secretion of transforming growth factor-&#x3b2; (TGF-&#x3b2;), or immunosuppressive cytokines IL-10 and IL-35 and by surface expression of IL-2 receptor subunit &#x3b1; (CD25) (<xref ref-type="bibr" rid="B60">60</xref>). Treg cells could also modulate the activity of dendritic cells (<xref ref-type="bibr" rid="B61">61</xref>). The count of Treg cells within the tumor (<xref ref-type="bibr" rid="B62">62</xref>) can be used as an independent biomarker to predict the survival rate in NSCLC patients (<xref ref-type="bibr" rid="B63">63</xref>). Nevertheless, the Treg cells within a tumor consist of very heterogeneous populations of either phenotypically stable suppressive/regulatory Tregs (forkhead transcription factor 3 - FoxP3<sup>++</sup>) and phenotypically unstable cells (FoxP3<sup>+/-</sup>), which could, under specific TME environment, switch their phenotype to effector Th1, Th2, Th17, or Tfh cells contributing to tumor elimination. In general, TME Tregs are highly activated, and express high levels of inhibitory immune checkpoint ligands such as PD-1, cytotoxic T lymphocyte-associated protein 4 (CTLA-4), lymphocyte activation gene-3 (LAG-3) and T cell immunoreceptor with Ig and ITIM domains (TIGIT), and also co-stimulatory molecules such as CD27, ICOS, OX40, 41BB, and GITR (<xref ref-type="bibr" rid="B64">64</xref>, <xref ref-type="bibr" rid="B65">65</xref>). From a diagnostic point of view, the composition of Treg cell subsets in the blood, tissue, and tumor is distinct (<xref ref-type="bibr" rid="B66">66</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>The cancer immunoediting concept. Three steps of cancer development: Stage 1: elimination: control of tumor cell proliferation associated with activation of innate and tumor-specific immune responses &#x2013; immune system eliminates cancer cells; Stage 2: equilibrium: tumor cell variants may not be completely eliminated but <italic>antigen-specific immune mechanisms effectively suppress cancer growth</italic>; and Stage 3: escape: high genetic instability results in the emergence of proliferating tumor cells poorly recognized by the immune system, not responding to immune-mediated cell-elimination mechanisms, or establishing an immunosuppressive tumor microenvironment.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1342086-g001.tif"/>
</fig>
<p>TAM and tumor stromal cells have been suggested to release IL-10 and TGF-&#x3b2;. Furthermore, tumors and other cells present in the TME (dendritic cells, macrophages or endothelial cells) increase expression of the indoleamine-2,3-dioxygenase (IDO) &#x2013; an immunosuppressive enzyme that cause a decrease in tryptophan amino acid concentration in extracellular environment (essentially required for the T cell function), induce the tumor-specific T cells exhaustion, and promote activation of Treg populations (<xref ref-type="bibr" rid="B67">67</xref>).</p>
</sec>
<sec id="s1_3_2">
<title>Immune cell composition and localization in primary NSCLC tumor</title>
<p>Spatial tumor heterogeneity occurs in most tumor types, including NSCLC, at both genetic and immunological levels, leading to a heterogeneous immune response toward individual cancer cells. This may be one of the main reasons for resistance development in cancer against immunotherapy, as it is very difficult to evaluate the actual status of immune response from available tumor tissue samples. For example, assessing the immune status in the center and periphery of the tumor as well as in distinct parts of the tumor can give completely different results. Furthermore, at different time points during various phases of therapy, temporal tumor heterogeneity plays an important role. Considering the findings mentioned above, small biopsies can give false results compared to surgically resected specimens.</p>
<p>NSCLC tumors can contain a high number of immune cells, including B cells, macrophages, Th cells, CTL, dendritic cells, NK cells, neutrophils, basophils, eosinophils, mast cells, myeloid-derived suppressor cells (MDSC), tumor-associated neutrophils (TANs), tumor-associated macrophages (TAMs) and other. 47% of all leukocytes, characterized by surface expression of CD45<sup>+</sup>, are represented by T cells, of which 26% are CD4<sup>+</sup> T cells, followed by 22% of CD8<sup>+</sup> T cells (<xref ref-type="bibr" rid="B68">68</xref>, <xref ref-type="bibr" rid="B69">69</xref>). CD8<sup>+</sup> T lymphocyte population present in NSCLC tumors has heterogeneous PD-1 expression levels. The most important CD8<sup>+</sup> cells are those with high PD-1 expression since they show a high tumor recognition capacity which recruits the immune cells to tertiary lymphoid structures (TLS). The presence of PD-1 high CD8<sup>+</sup> T cells was reported to be associated with favorable response and survival of NSCLC patients treated with PD-1 inhibitors (<xref ref-type="bibr" rid="B70">70</xref>). The percentage of B cells varies from 4.4 to 15.9% between studies (<xref ref-type="bibr" rid="B69">69</xref>, <xref ref-type="bibr" rid="B71">71</xref>). This significant variance in B cell proportions has been suggested due to different tumor tissue sampling, while B cells reside primarily at the periphery of the tumor tissue, where they cluster with DCs and T cells (<xref ref-type="bibr" rid="B69">69</xref>). DCs represent 2.1% of all immune cells in NSCLC tumors of which plasmocytoid DC (pDC; HLA-DR<sup>+</sup>CD123<sup>+</sup>) represent 1.2% of all leukocytes, myeloid DC (mDC2; HLA-DR<sup>+</sup>CD11c<sup>+</sup>CD1c<sup>+</sup>) represent 0.8% and CD141<sup>+</sup>mDC (mDC1; HLA-DR<sup>+</sup>CD11c<sup>+</sup>CD141<sup>+</sup>) represent 0.1% of all leukocytes (<xref ref-type="bibr" rid="B72">72</xref>). mDCs present antigen to na&#xef;ve T cells and contribute to CTL generation, pDCs produce type I IFNs, thus enhancing the antitumor immunity (<xref ref-type="bibr" rid="B73">73</xref>). Macrophages represent 4.7% and NK cells represent 4.5% of the immune cells in NSCL. Granulocytes are represented mainly by neutrophils (8.6%), followed by mast cells (1.4%), basophils (0.4%) and eosinophils (0.3%) (<xref ref-type="bibr" rid="B69">69</xref>).</p>
<p>Intratumor immune cells are able to form tertiary lymphoid structures (TLSs) placed at the periphery of tumor tissue (<xref ref-type="bibr" rid="B74">74</xref>). TLSs comprise a B cell area, neighboring a T cell area covering clusters of mature DCs and T cells (<xref ref-type="bibr" rid="B71">71</xref>, <xref ref-type="bibr" rid="B75">75</xref>). Previous studies have established the TLSs as predictive biomarkers for the efficacy of immunotherapy in sarcoma, melanoma, and renal cell carcinoma (<xref ref-type="bibr" rid="B76">76</xref>, <xref ref-type="bibr" rid="B77">77</xref>). Their critical role as a biomarker in NSCLC is under investigation (<xref ref-type="bibr" rid="B78">78</xref>, <xref ref-type="bibr" rid="B79">79</xref>).</p>
</sec>
</sec>
<sec id="s1_4">
<title>Tumor-triggered immune cell suppression</title>
<p>Lungs are potent immune organs and contain macrophages, DCs, NK cells and adaptive immune cells (T and B cells). Therefore, immune checkpoints in NSCLC are essential defense mechanisms against tumor progression.</p>
<p>Immune-inhibitory pathways, immune checkpoints, contribute to regulating normal immune responses and maintaining immune tolerance. Some tumor cells exhibit the ability to misuse the immune checkpoint pathways to protect themselves from immune surveillance by blocking the T cells activity through immune checkpoint ligands expressed on the tumor cell surface including programmed cell death ligand 1 (PD-L1), programmed cell death ligand 2 (PD-L2), B7-1, B7-2, liver and lymph node sinusoidal endothelial cell C-type lectin (LSECtin/CLEC4G), Fibrinogen-like protein 1 (FGL1), Galectin-3, HMGB1, PtdSer, Cecam2, Galectin-9, CD112/CD155, and some other not fully characterized. The best characterized and clinically tested immune checkpoint is programmed cell death protein 1 (PD-1)/PD-L1 or PD-L2 pair (<xref ref-type="bibr" rid="B80">80</xref>&#x2013;<xref ref-type="bibr" rid="B83">83</xref>).</p>
<sec id="s1_4_1">
<title>The role of PD-1/PD-L1 in immune system suppression</title>
<p>PD-1/PD-L1 signaling has an important function in immune tolerance due to its ability to suppress the immune response. Its impairment leads to the induction of autoimmunity, progression of chronic infections and tumor growth (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>PD1/PD-L1 signaling Interaction of APC, tumor or other cells-expressing PD-L1 (PD-L2) with PD-1 leads to phosphorylation of PD-1 cytoplasmic domain containing two motifs - ITIM-pY223 (white band in PD-1 cytoplasmic domain) and ITSM-pY248 (red band in PD-1 cytoplasmic domain), of which ITSM is crucial for activation of SHP2 phosphatase. SHP2 inhibits two pathways involved in the regulation of T cell differentiation, proliferation, and activation. The first pathway is antigen-dependent and is activated by MHC-peptide-TCR/CD4/8 interaction where SHP2 suppress Lck and ZAP70 kinases signaling through PLC&#x3b3; to three pathways MAPK/ERK/AP-1, PIP3/IP<sub>3</sub>/Calcineurin/NFATc, and PIP3/DAG/PKC&#x398;/NF-&#x3ba;B. The second pathway, PI3K/Akt, is antigen-independent, and here SHP-2 suppresses PIP<sub>2</sub> phosphorylation. In tumor cells, PD-L1 expression positively correlates with the activity of MAPK/ERK signaling pathway, where SHP-2 is its positive regulator. SHP-2 binds to autophosphorylated growth factor receptors, Grb2-associated binder proteins, and signal regulatory protein &#x3b1; that are tyrosine-phosphorylated. Mutations in SHP-2 and other proteins in this signaling pathway, found in many different cancers, are connected with increased MAPK/ERK activity resulting in increased PD-L1 expression and thus tumor cell-controlled suppression of surrounding immune cells within TME and finally, they support tumorigenesis. Membrane-bound PD-L1 can be modified by HDAC-2 and transferred into the nucleus, where promotes transcription of genes involved in antigen presentation, NF-&#x3ba;B signaling, immune checkpoints, inflammation, proper chromatid segregation and pyroptosis.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1342086-g002.tif"/>
</fig>
<p>PD-1 signaling affects both the adaptive and innate immune responses. Its expression was originally linked to the regulation of activity of T cells, B cells, DCs, macrophages, monocytes, and NK cells (<xref ref-type="bibr" rid="B80">80</xref>, <xref ref-type="bibr" rid="B84">84</xref>) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>), and is regulated by 10 transcription factors: eight activators (c-fos/AP-1, STAT3, STAT4, ISGF3, FoxO1, Notch, NFATc1, and NF-&#x3ba;B) and two inhibitors (Blimp-1 and T-bet) (<xref ref-type="bibr" rid="B85">85</xref>). Populations of developing thymocytes and resting na&#xef;ve T cells show low basal-level expression of PD-1 (<xref ref-type="bibr" rid="B86">86</xref>), which has been linked to immune tolerance (<xref ref-type="bibr" rid="B87">87</xref>). During an acute infection or the initial stage of tumor development, the generated pathogen/tumor-derived antigens stimulate the maturation of T lymphocytes towards effector and memory subsets. Effector T cells target the infected/tumor cells and eradicate them. In contrast to acute T cell activation, permanent TCR stimulation promotes T cell exhaustion associated with upregulating surface co-inhibitory receptors such as PD-1, TIM-3 and LAG-3, which prevents the generation of autoreactive T cells.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Cells expressing PD-1, PD-L1 and PD-L2 constitutively and upon activation. Tertiary lymphoid structures.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1342086-g003.tif"/>
</fig>
<p>PD-1 interacts with PD-1 ligands (PD-L1 and PD-L2). PD-L1 is expressed in T cells, B cells, macrophages, DCs, bone marrow-derived mast cells, and tumor cells (<xref ref-type="bibr" rid="B88">88</xref>) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). In contrast, PD-L2 expression is greatly limited, as it is mainly detected on activated macrophages, DCs, and some tumor cells (<xref ref-type="bibr" rid="B89">89</xref>). DCs have the potential to express PD&#x2010;L1 on their surface (<xref ref-type="bibr" rid="B90">90</xref>), and studies on other cancers, including colorectal cancer, have discovered that PD&#x2010;L1 positive DCs are better predictors of response to anti-PD&#x2010;L1 immunotherapy compared to PD&#x2010;L1<sup>+</sup> tumor cells (<xref ref-type="bibr" rid="B91">91</xref>).</p>
<p>Cancer cells utilize the expression of PD-L1 as an &#x201c;adaptive immune mechanism&#x201d; to escape from the immune anti-tumor responses (<xref ref-type="bibr" rid="B80">80</xref>). 55% of NSCLC patients are positive for PD-L1 (<xref ref-type="bibr" rid="B92">92</xref>). The expression of PD-L1 is typically linked to the characteristics of the immune microenvironment enriched with CD8<sup>+</sup> T cells, generation of Th1 cytokines, chemical factors, interferons and specific gene expression (<xref ref-type="bibr" rid="B93">93</xref>). PD-L1 expression, therefore, can be categorized as constitutive and inducible based on the extrinsic or intrinsic stimuli. The tumor cells exhibit constitutive PD-L1 expression mediated by dysregulation of tumor suppressor genes or oncogenic signaling pathways. For example, activation of the PI3K/AKT signaling pathway can enhance the expression of PD-L1 via mediating an increase in extrinsic signaling or a decrease in negative regulators, like PTEN. The downregulation of PTEN has been suggested to activate the PI3K/AKT which further accelerates the PD-L1 expression (<xref ref-type="bibr" rid="B94">94</xref>). The other signaling pathway involved in the upregulation of PD-L1 is the MAPK signaling pathway (<xref ref-type="bibr" rid="B95">95</xref>), and recently the JAK/STAT pathway has also been stated to produce PD-L1 expression in cancers. Additionally, fibroblast growth factor receptor 2 (FGFR2) signaling was also documented to substantially activate the JAK/STAT3 signaling pathway, which in turn caused enhanced expression of PD-L1. Altogether, PI3K/AKT, MAPK, and JAK/STAT3 pathways lead to overexpression of Myc, an oncogenic transcription factor, which binds to the PD-L1 promoter and enhances its expression. Increased Myc is observed in &#x223c;70% of tumors (<xref ref-type="bibr" rid="B96">96</xref>, <xref ref-type="bibr" rid="B97">97</xref>). Moreover, genetic, or pharmacological deactivation of Myc has been reported to attenuate the mRNA expression of PD-L1 levels and regenerate the anti-tumor responses in the TME (<xref ref-type="bibr" rid="B98">98</xref>). PD-L1 expression, on the other hand, can also be upregulated by DNA double-strand breaks which trigger the STAT signaling pathway via ataxia-telangiectasia mutated (ATM) and Rad3-related checkpoint kinase 1 (Chk1) (<xref ref-type="bibr" rid="B99">99</xref>). Other genetic drivers contributing to the high expression of PD-L1 are the mutations in ALK, the HIF1/2&#x3b1; and nuclear factor &#x3ba;B (NF-&#x3ba;B) (<xref ref-type="bibr" rid="B96">96</xref>). The tumor-immune cells microenvironment augments PD-L1 expression with pro-inflammatory cytokines, such as IFN-&#x3b3;, tumor necrosis factor &#x3b1; (TNF-&#x3b1;), IL-10, interleukin-1 (IL-1) and interleukin-6 (IL-6) (<xref ref-type="bibr" rid="B100">100</xref>). IFN-&#x3b3; regulates PD-L1 expression preferentially on immune cells, whereas PD-L1 expression on tumor cells is epigenetically regulated and associated with hypomethylation of PD-L1 promoter (<xref ref-type="bibr" rid="B101">101</xref>). In some NSCLC cases, PD-L1 amplification of the genomic region on chromosome 9p24.1 appeared and led to enhanced PD-L1 expression (<xref ref-type="bibr" rid="B102">102</xref>). The role of PD-L1 in cellular membrane of tumor cells is well known. Currently, the role of PD-L1 in nucleus of tumor cells were described. Hypoxia present in rapidly growing tumor tissue induce histone deacetylase 2 (HDAC2)-dependent deacetylation of membrane PD-L1, and promotes its nuclear translocation. Nuclear PD-L1 can evade conventional anti-PD1/PD-L1 therapies and can effectively promote tumorigenesis by regulation of angiogenesis by EGR1 regulation (<xref ref-type="bibr" rid="B103">103</xref>) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<p>The level of PD-L1 is tightly connected with its stability. The fully glycosylated form of PD-L1 was estimated to have a half-life of 12&#xa0;h, whereas non-glycosylated PD-L1 showed rapid proteolysis with a half-life of 4&#xa0;h. Furthermore, decorated glycans were predicted to protect PD-L1 against proteasome degradation, and thus improving its molecular contacts with PD-1 on CD8<sup>+</sup> T cells (<xref ref-type="bibr" rid="B104">104</xref>). In contrast, glycosylation of PD-1 has been a topic of discussion as some studies claim the highly glycosylated PD-1 protein is essentially required in PD-1/PD-L1 interaction (<xref ref-type="bibr" rid="B105">105</xref>) while others deciphered the distant location of glycosylation sites from the PD-L1 binding pocket on PD-1 and suggested no direct role of glycosylation in PD-1/PD-L1 interaction (<xref ref-type="bibr" rid="B106">106</xref>). Studies describing glycosylation level of PD-L1 in NSCLC tumor cells still need to be completed. We hypothesize that NSCLC tumor cells not only constitutively express PD-L1, but also exhibit a high level of glycosylation in comparison with other tumors.</p>
<p>Higher levels of both PD-L1 and IDO proteins in tumor tissue are independent negative prognostic factors for overall survival in resected NSCLC patients. Immunosuppressive microenvironment - exhausted T-cells together with a decrease in tryptophan, promotes tumor growth, increases the risk of progression and unfavorable prognosis (<xref ref-type="bibr" rid="B107">107</xref>).</p>
</sec>
<sec id="s1_4_2">
<title>Other molecules involved in immune system suppression - CTLA-4, TIM-3, LAG-3</title>
<p>CTLA-4 (cluster of differentiation 152, CD152) has been identified as the surface receptor of activated T cells and is constitutively expressed on Treg cells, where constitutive expression of CTLA-4 is controlled by FoxP3 (<xref ref-type="bibr" rid="B108">108</xref>, <xref ref-type="bibr" rid="B109">109</xref>), and essentially contributes to the regulation of T cell homeostasis and self-tolerance. The current study of Hiroshi Saijo shows that anti-PD-1 antibody monotherapy might be less effective against large NSCLC due to the infiltration of Treg cells. Therefore, it might be appropriate for large NSCLC to select a treatment including an anti-CTLA-4 antibody, which can target Treg cells (<xref ref-type="bibr" rid="B110">110</xref>). In na&#xef;ve T cells, CTLA-4 is primarily located in the cytoplasm since it is exposed to constitutive endocytosis from the plasma membrane, which results in the internalization of 90% CTLA-4 (<xref ref-type="bibr" rid="B111">111</xref>). The functional activity of the CTLA-4 receptor primarily includes competition with CD28 receptors for binding to B7 ligands (B7-1/CD80 and B7-2/CD86) on APC. CTLA-4 and CD28 facilitate opposing functions in T cell activation. In na&#xef;ve T cells, stimulatory signals resulting from both TCR and CD28:B7 binding induce upregulation of CTLA-4 and its transfer to plasmatic membrane. CTLA-4 is known to interact with B7 ligands with higher affinity and avidity than CD28 (<xref ref-type="bibr" rid="B111">111</xref>, <xref ref-type="bibr" rid="B112">112</xref>). The functional role of CTLA-4 is to inhibit the priming, activation and migration of T cells (<xref ref-type="bibr" rid="B111">111</xref>). In the case of Treg-expressed CTLA-4 interaction with APC-expressed CD80/CD86 induces the upregulation and secretion of indoleamine 2,3-dioxygenase by APC, contributing to the creation of an extrinsic immunosuppressive environment. CTLA-4/B7 function in different phases in comparison to the PD-1/PD-L1 axis, and thus synergistic inhibition of both signaling pathways offers a potential solution to reduce tumor resistance during ICI monotherapy (<xref ref-type="bibr" rid="B113">113</xref>, <xref ref-type="bibr" rid="B114">114</xref>). Although CTLA4 expression was found in multiple tumor cells including NSCLC, its function in these cells is largely unknown and is correlated with poor prognosis (<xref ref-type="bibr" rid="B115">115</xref>). In NSCLC, CTLA-4 positivity was identified on tumor epithelial cells as well as on tumor stromal compartments with relatively homogenous distribution. The prognostic impact of CTLA-4 on tumor epithelial cells is favorable, since 5-year OS is 29% in CTLA-4 positive vs 19% in CTLA-4 negative primary tumors (<xref ref-type="bibr" rid="B115">115</xref>).</p>
<p>T cell immunoglobulin and mucin domain 3 (TIM-3) is a member of the TIM family of genes known for their expression on T cells in allergy and autoimmune diseases. It was initially identified as a specific cell surface marker of interferon (IFN-&#x3b3;)-producing Th1 and CTL cells (<xref ref-type="bibr" rid="B116">116</xref>, <xref ref-type="bibr" rid="B117">117</xref>). TIM-3 has been studied as a negative regulator which essentially contributes to immune tolerance. For instance, upregulated TIM-3 expression is noticed in exhausted CD8<sup>+</sup> T cells in chronic infections and tumors, while its expression on CD4<sup>+</sup> T cells is correlated with poor prognosis of NSCLC (<xref ref-type="bibr" rid="B118">118</xref>). Tumor cells could inhibit T cells by surface expression or by releasing several TIM-3 ligands such as PtdSer, HMGB1, or Galectin-9 (<xref ref-type="bibr" rid="B119">119</xref>). In their study, Zhuang et&#xa0;al., 2012 show TIM-3 positively stained on 92.9% of TILs and most infiltrated tumor-associated macrophages (TAMs) in lung cancer tissues, and 87% of NSCLC primary tumors were positive for TIM-3 (<xref ref-type="bibr" rid="B120">120</xref>). Another, more comprehensive study shows TIM-3 located on 25.3% of TILs in NSCLC tumors (<xref ref-type="bibr" rid="B121">121</xref>). There are currently a number of clinical trials investigating the use of TIM-3 blockers in NSCLC. Most of them aim for combination of two targets - TIM-3 and PD-1 (e.g. NCT06162572, NCT03708328, NCT04931654, source clinicaltrials.gov).</p>
<p>LAG-3 is an immune inhibitory receptor that is expressed on the surface of activated T cells, pDC, NK cells and B cells. Important roles of LAG-3 are inhibiting Th1 cell proliferation and reducing IL-2, IFN-&#x3b3;, and TNF secretions (<xref ref-type="bibr" rid="B113">113</xref>). The presence of LAG-3 on TILs in tumor tissues has been linked to the poor prognosis of NSCLC (<xref ref-type="bibr" rid="B122">122</xref>, <xref ref-type="bibr" rid="B123">123</xref>). LAG-3 is established to regulate the T cell-induced immune response in three ways: (i) directly by stopping the T cells activation and proliferation through negative regulation of T cells, (ii) by enhancing the inhibitory activities of Tregs, and (iii) by preventing the activation of T cells via regulation of APCs (<xref ref-type="bibr" rid="B124">124</xref>). LAG-3 ligands such as MHC II, Galectin-3, LSECtin, and FGL1 are expressed on DCs and some other cells. Importantly, the expression of FGL1 was confirmed on lung adenocarcinoma cells (<xref ref-type="bibr" rid="B125">125</xref>) which indicates another mechanism of tumor-mediated immune cell suppression. LAG3 is strongly associated with proliferation in NSCLC and significant LAG3 co-expression with other ICI targets suggests its plausible use in clinical trial selection and patient stratification for combination immunotherapy strategies (<xref ref-type="bibr" rid="B126">126</xref>). LAG-3 is often connected with poor prognosis (<xref ref-type="bibr" rid="B123">123</xref>).</p>
<p>In newly diagnosed NSCLC patients, PD-1, LAG-3 and TIM-3 were detected in TILs from 55%, 41.5%, and 25.3%, respectively. Primarily, PD-1 and LAG-3 were localized on T cell subsets while higher expression of TIM-3 was noticed in macrophages and NK cells. Co-expression of PD-1, LAG-3, and TIM-3 has been related to the activation of T cells, proliferation, and higher expression of proapoptotic markers (FAS/BIM) (<xref ref-type="bibr" rid="B121">121</xref>). Thus, combination therapy is a promising target, which is already present in many clinical studies (ClinicalTrials.gov).</p>
<p>OX40, a member of the TNFR family, is involved in the activation of anti-tumor immune response. Its expression is induced on the T cell surface after antigen recognition and coincides with the expression of OX40 ligand (OX40L) mainly on the activated B cells, APCs, NK cells and macrophage cells (<xref ref-type="bibr" rid="B113">113</xref>, <xref ref-type="bibr" rid="B127">127</xref>). Activation of OX40 can enhance Th1/Th2-mediated antitumor immune response and, conversely, suppress the suppressive function of Treg cells (<xref ref-type="bibr" rid="B127">127</xref>). Enhanced OX40 signaling induced by OX40 agonist antibodies has been observed to augment the T cell-mediated anti-tumor immunity and support enhanced T cell infiltration into tumors, which further results in tumor regression and prolonged survival. Biological activity and the role of the soluble form of OX40 and OX40L in patients with a solid tumor are not well investigated, however, the elevated levels of OX40 and OX40L in serum can be linked with poor prognosis and may display the immune-exhausted status against lung adenocarcinoma (<xref ref-type="bibr" rid="B128">128</xref>). In NSCLC, high OX-40 expression in the tumor immune infiltrate is associated with a favorable prognosis. Its prognostic utility is independent of PD-L1 and other common markers of immune activation. High OX-40 expression potentially identifies a unique subgroup of NSCLC that may benefit from co-stimulation with OX-40 agonist antibodies and potentially enhance the efficacy of existing immune checkpoint therapies (<xref ref-type="bibr" rid="B129">129</xref>).</p>
<p>TIGIT is an inhibitory immune receptor from the poliovirus receptor (PVR) family of immunoglobulin proteins (<xref ref-type="bibr" rid="B113">113</xref>). The biological role of TIGIT involves interactions with the CD155 expressed on APCs or tumor cells to down-regulate the functions of NK cells and T cells (<xref ref-type="bibr" rid="B130">130</xref>). Like in other types of cancers, enhanced expression of TIGIT was observed in NSCLC and can be associated with increased levels of other immune inhibitory receptors, including PD-1, LAG-3, TIM-2. We can expect that dual inhibition of immune receptors can offer a favorable immunotherapy. As a mice experiment has already shown, the positive effect of dual blockade TIGIT and PD-1/PD-L1 resulted in complete tumor rejection and overall prolonged survival (<xref ref-type="bibr" rid="B131">131</xref>). In NSCLC, the prognostic value of TIGIT is still questionable, however, high TIGIT density correlates with advanced TNM score (<xref ref-type="bibr" rid="B132">132</xref>). Blocking TIGIT in NSCLC requires further investigation, but TIGIT will likely belong to promissing ICI targets in combination therapy.</p>
</sec>
</sec>
<sec id="s1_5">
<title>Peripheral blood markers in NSCLC diagnosis</title>
<p>Histopathological assessment is the gold standard for diagnosing NSCLC. However, due to its invasive nature, testing for tumor markers in the peripheral blood is more convenient for the patient. Such blood markers can be utilized as a suitable tool for possible characterization of pathological types of NSCLC and applied therapy. In the clinical diagnosis of NSCLC, the presence of cytokeratin 19 fragments antigen (CYFRA21-1), carcinoembryonic antigen (CEA) and squamous cell carcinoma antigen (SCC-Ag) in the peripheral blood are used as reference tumor biomarkers. CYFRA21-1 in the blood is more frequent in NSCLC compared to other cancers (<xref ref-type="bibr" rid="B133">133</xref>). Additionally, other common tumor blood markers increased in NSCLC are carbohydrate antigen 125 (CA125), CA15-3, CA72-4 and CA19-9.</p>
<p>Patients with longer overall survival showed elevated levels of CD3<sup>+</sup>, CD4<sup>+</sup> and CD8<sup>+</sup> T cells, while peripheral blood NK cell counts were reduced (<xref ref-type="bibr" rid="B134">134</xref>). Moreover, such patients also showed a statistically significantly reduced PD-1 expression on both CD3<sup>+</sup> and CD8<sup>+</sup> T cells. The prognostic value of PD-1 expression on CD4<sup>+</sup> T cells in the peripheral blood of patients with NSCLC is evident and shows that high PD-1 expression is associated with poor clinical outcomes (<xref ref-type="bibr" rid="B135">135</xref>). Testing peripheral expression of PD-1 can potentially calculate a clinical response to the given therapy based on the inhibition of the PD-1/PD-L1 axis (<xref ref-type="bibr" rid="B136">136</xref>). Notably, a positive correlation between blood PD-L1 and tumor PD-L1 expression has been established and could serve as a positive biomarker of efficacy and overall survival in advanced NSCLC patients (<xref ref-type="bibr" rid="B137">137</xref>). Another proficient marker is the presence of responsive memory T cells against TAAs in the peripheral blood of NSCLC patients (<xref ref-type="bibr" rid="B46">46</xref>).</p>
<p>Low-density neutrophils (LDNs) present in peripheral blood are increased in NSCLC and marked as potential novel biomarkers for the characterization of NSCLC tumors. LDNs, comprised of subsets of both immature and mature neutrophils, have been linked with immunosuppressive functions as opposed to the high-density neutrophils (HDNs) which showed anti-tumorigenic properties (<xref ref-type="bibr" rid="B138">138</xref>).</p>
<p>Several studies have attempted to decipher the molecular biomarkers or prognostic factors from the peripheral blood to identify the chances of lung cancer metastasis or recurrence. In this context, efforts are made to identify potential endothelial, hematological, or inflammatory markers in NSCLC patients. Recent studies have identified increased levels of RANTES, sVCAM-1, sE-selectin, HMGB1, Ang-2, VEGF, PAI-1 and platelet-derived microparticles (PDMP) in NSCLC patients (<xref ref-type="bibr" rid="B139">139</xref>). Not only PDMP, but also mean platelet volume and platelet counts are important prognostic factors in NSCLC (<xref ref-type="bibr" rid="B140">140</xref>&#x2013;<xref ref-type="bibr" rid="B142">142</xref>).</p>
<p>Initially, immune checkpoints were expected to be expressed only on cell membranes. However, recent research confirmed that they are also present in soluble forms (s) in tissue fluids including serum as exemplified for sTIM-3, s4-1BB, sCD27 (sTNFRSF7), sLAG-3, sIDO, sPD-L2, sCTLA-4 (sCD152), sB7-1 (sCD80) and sPD-1 (<xref ref-type="bibr" rid="B143">143</xref>). Although not characterized in detail, soluble forms of immune checkpoints have been reported to play a critical role in immune regulation in a variety of tumors and inflammatory conditions. They are biologically active and dependent on membrane function in either positive or negative regulation in the paracrine and systemic manner. For example, sPD-1 may function as an immune stimulator, in contrast to membrane-bound PD-1, whereas sPD-L1 retains suppressive activity (<xref ref-type="bibr" rid="B144">144</xref>). sTIM-3 could promote tumor growth and inhibit T cell proliferation as well as IL-2 and IFN-&#x3b3; secretion. In a cohort of NCSCLC patients, serum levels of sTIM-3, sCD137, sCD27, sLAG-3, sIDO, sPD-L2 and sCTLA-4 were significantly higher when compared to the control group. Furthermore, sTIM-3, cCD137 and sCD27 exhibit significantly higher serum levels in advanced NSCLC when compared to early stages (<xref ref-type="bibr" rid="B143">143</xref>). In addition, TIM-3 and LAG-3 were identified as independent biomarkers for the early diagnosis of NSCLC and the combination of TIM-3, LAG-3 and CD137 could increase the diagnostic accuracy (<xref ref-type="bibr" rid="B143">143</xref>, <xref ref-type="bibr" rid="B145">145</xref>).</p>
<p>In addition to secreted forms of immune checkpoints, exosomes could contain membrane-bound immune checkpoints exhibiting important immunosuppressive roles. In NSCLC, exosomal PD-L1 could suppress the secretion of IL-2 and IFN-&#x3b3;, leading to apoptosis of CD8<sup>+</sup> T cells (<xref ref-type="bibr" rid="B146">146</xref>). In experimental mice, injection of tumor cells that were unable to produce PD-L1-decorated exosomes induced a memory and effector immune response that prevented the growth of wild-type tumor cells administered to a specific part of the mouse&#x2019;s body, even several weeks later (<xref ref-type="bibr" rid="B147">147</xref>). The same report documented that tumor-generated exosomal PD-L1 acts systemically, including draining lymph nodes where it inhibits T cell activation. Therefore, inhibition of generating PD-L1 decorated exosomes represents a new way of tumor therapy. It could be proposed that other immune checkpoint molecules could systemically circulate with exosomes and microsomes, urging the need for further research.</p>
<p>In addition to immune suppression mediated by binding PD-L1 to T cell surface-exposed PD-1, it was reported that PD-L1 could be actively transported into the nucleus of tumor cells, where it could affect cell division and genomic instability by affecting sister chromatin cohesion and immune evasion by affecting transcription of many immune genes, MHC presentation, and pyroptosis as detailed in review by Xiong et&#xa0;al. (<xref ref-type="bibr" rid="B148">148</xref>). Nuclear localization of PD-L1 was associated with shorter survival in colorectal cancer (<xref ref-type="bibr" rid="B149">149</xref>).</p>
<p>Another potential marker to predict disease progression in NSCLC is small non-coding RNAs (miRNAs). There are currently seven miRNAs (miR-215-5p, miR-411-3p, miR-493-5p, miR-494-3p, miR-495-3p, miR-548j-5p and miR-93-3p) and their presence in the patient serum helps to distinguish good responders from poor responders to nivolumab (<xref ref-type="bibr" rid="B150">150</xref>).</p>
<p>Recently, long noncoding RNAs (lncRNAs) have been suggested as potential clinical indicators due to their stability and tissue specificity and their detection in various body fluids (<xref ref-type="bibr" rid="B151">151</xref>). lncRNAs can be used as markers to distinguish early-stage disease from healthy patients with high sensitivity and specificity and to provide prognostic insight into the risk of metastases and recurrence (<xref ref-type="bibr" rid="B152">152</xref>).</p>
</sec>
</sec>
<sec id="s2">
<title>Current and future directions of immune checkpoint inhibitors therapy</title>
<sec id="s2_1">
<title>Antibodies &#x2013; current tool for NSCLC treatment</title>
<p>There are currently seven monoclonal antibodies approved for the treatment of NSCLC. Three of them (Pembrolizumab, Nivolumab, Cemiplimab) target PD-1, the other two (Tremelimumab, Ipilimumab) target CTLA-4 and two others (Atezolizumab and Durvalumab) are anti-PD-L1 mAbs (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>FDA/ EMA proved antibodies targeting immune checkpoints.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Target</th>
<th valign="top" align="left">FDA/EMA approved</th>
<th valign="top" align="left">Year of FDA/EMA approval</th>
<th valign="top" align="left">Name</th>
<th valign="top" align="left">Brand Name</th>
<th valign="top" align="left">Type</th>
<th valign="top" align="left">Disease</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="3" align="left">PD-1</td>
<td valign="top" rowspan="3" align="left">yes</td>
<td valign="top" align="left">2017</td>
<td valign="top" align="left">Pembrolizumab</td>
<td valign="top" align="left">Keytruda</td>
<td valign="top" align="left">humanized monoclonal IgG4 kappa antibody</td>
<td valign="top" align="left">NSCLC<break/>Urothelial carcinoma<break/>Melanoma<break/>Hodgkin lymphoma<break/>Head and neck squamous cell carcinoma<break/>Cervical cancer<break/>Gastric cancer<break/>Metastatic colorectal cancer</td>
</tr>
<tr>
<td valign="top" align="left">2016</td>
<td valign="top" align="left">Nivolumab</td>
<td valign="top" align="left">Opdivo</td>
<td valign="top" align="left">humanized IgG4 monoclonal antibody</td>
<td valign="top" align="left">NSCLC<break/>SCLC<break/>Urothelial carcinoma<break/>Melanoma<break/>Renal cell carcinoma<break/>Lung cancer<break/>Hodgkin lymphoma<break/>Metastatic colorectal cancer</td>
</tr>
<tr>
<td valign="top" align="left">2018</td>
<td valign="top" align="left">Cemiplimab</td>
<td valign="top" align="left">Libtayo</td>
<td valign="top" align="left">recombinant human IgG4 monoclonal antibody</td>
<td valign="top" align="left">Cutaneous squamous cell carcinoma</td>
</tr>
<tr>
<td valign="top" rowspan="3" align="left">PD-L1</td>
<td valign="top" rowspan="3" align="left">yes</td>
<td valign="top" align="left">2016</td>
<td valign="top" align="left">Atezolizumab</td>
<td valign="top" align="left">Tecentriq</td>
<td valign="top" align="left">Fc-engineered, humanized, non-glycosylated IgG1 kappa immunoglobulin</td>
<td valign="top" align="left">NSCLC<break/>SCLC<break/>Triple negative breast cancer<break/>Urothelial carcinoma</td>
</tr>
<tr>
<td valign="top" align="left">2017</td>
<td valign="top" align="left">Avelumab</td>
<td valign="top" align="left">Bavencio</td>
<td valign="top" align="left">human IgG1 lambda monoclonal antibody</td>
<td valign="top" align="left">Merkel cell carcinoma<break/>Urothelial carcinoma<break/>Renal cell carcinoma</td>
</tr>
<tr>
<td valign="top" align="left">2017</td>
<td valign="top" align="left">Durvalumab</td>
<td valign="top" align="left">Imfinzi</td>
<td valign="top" align="left">human immunoglobulin G1 kappa (IgG1&#x3ba;) monoclonal antibody</td>
<td valign="top" align="left">NSCLC<break/>SCLC<break/>Urothelial carcinoma<break/>Hepatocelular carcinoma</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">CTLA-4</td>
<td valign="top" rowspan="2" align="left">yes</td>
<td valign="top" align="left">2020</td>
<td valign="top" align="left">Ipilimumab</td>
<td valign="middle" align="left">Yervoy</td>
<td valign="top" align="center">recombinant IgG1 kappa immunoglobulin</td>
<td valign="top" align="left">NSCLC<break/>Melanoma<break/>Renal cell carcinoma<break/>Mesothelioma<break/>Metastatic colorectal cancer<break/>Mesothelioma<break/>Esophageal cancer</td>
</tr>
<tr>
<td valign="top" align="left">2022</td>
<td valign="top" align="left">Tremelimumab</td>
<td valign="middle" align="left">Imjudo</td>
<td valign="top" align="center">human IgG2 monoclonal antibody</td>
<td valign="top" align="left">NSCLC<break/>Hepatocellular carcinoma</td>
</tr>
<tr>
<td valign="top" align="left">LAG-3</td>
<td valign="top" align="left">yes</td>
<td valign="top" align="left">2022</td>
<td valign="top" align="left">Relatlimab</td>
<td valign="middle" align="left">Opdualag</td>
<td valign="top" align="left">human IgG4 monoclonal antibody</td>
<td valign="top" align="left">Melanoma</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s2_1_1">
<title>Anti-PD1 antibodies</title>
<p>Pembrolizumab (Keytruda, Merck Sharp &amp; Dohme) is a humanized monoclonal IgG4 antibody against the immune checkpoint protein PD-1. Pembrolizumab was first approved in the United States (US) by the Food and Drug Administration (the FDA) in September, 2014 and later in Europe by the European Medicines Agency (EMA) in July, 2015. In, 2019, the FDA and EMA approved Keytruda as first-line treatment in metastatic NSCLC where tumor proportion score (TPS) is greater than 50% (<xref ref-type="bibr" rid="B82">82</xref>) and second-line treatment for patients with PD-L1 expression TPS exceeding 1%. For evaluation of the PD-L1 TPS in NSCLC tissue samples, the FDA approved a validation assay from Dako/Agilent for qualitative assessment of PD-L1 protein expression in formalin-fixed paraffin-embedded (FFPE) tissue samples of NSCLC patients. This assay utilizes monoclonal mouse anti-PD-L1 antibody clone 22C3, designed for immunohistochemical (IHC) analysis. In, 2018, the FDA approved Keytruda in combination with pemetrexed and platinum chemotherapy as the first-line treatment of patients with metastatic nonsquamous NSCLC, with no EGFR or ALK genomic tumor aberrations, and in the same year, in combination with carboplatin and either paclitaxel or paclitaxel protein-bound, as first-line treatment of patients with metastatic squamous NSCLC (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>).</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Profiling of NSCLC patients to FDA/EMA approved therapies.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Target</th>
<th valign="top" align="left">Drug</th>
<th valign="top" align="left">Age</th>
<th valign="top" align="left">Type of tumor</th>
<th valign="top" align="left">Type of treatment</th>
<th valign="top" align="left">Determination of target positivity</th>
<th valign="top" align="left">Presence of EGFR and ALK mutations</th>
<th valign="top" align="left">Combination with other chemotherapy</th>
<th valign="top" align="left">OS (years)<break/>% of survival (Drug vs other)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="4" align="left">PD-L1</td>
<td valign="top" rowspan="4" align="left">Keytruda</td>
<td valign="top" rowspan="4" align="left">FDA &#x2013; not determined<break/>EMA &#x2013; age 12 and older</td>
<td valign="top" align="left">metastatic non-squamous</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">pemetrexed and platinum chemotherapy</td>
<td valign="top" align="left">KEYTRUDA + platina+pemetrexed vs platina+pemetrexed<break/>5 years<break/>19,4 % vs 11,3 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic squamous</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Not determined</td>
<td valign="top" align="left">carboplatin and either paclitaxel or paclitaxel protein-bound</td>
<td valign="top" align="left">KEYTRUDA + carbo + paclitaxel vs carbo + paclitaxel<break/>5 years<break/>18,4 % vs 9,7 %</td>
</tr>
<tr>
<td valign="top" align="left">Nonsquamous and Squamous Advanced</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">TPS &#x2265;1%</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Single agent therapy</td>
<td valign="top" align="left">KEYTRUDA vs Platinum-containing chemotherapy<break/>5 years<break/>32 % vs 16 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic</td>
<td valign="top" align="left"/>
<td valign="top" align="left">TPS &#x2265;1%</td>
<td valign="top" align="left">Yes, before Keytruda treatment</td>
<td valign="top" align="left">Single agent therapy &#x2013; disease progression on or after platinum-containing chemotherapy</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" rowspan="4" align="left">PD-1</td>
<td valign="top" rowspan="4" align="left">Opdivo</td>
<td valign="top" rowspan="4" align="left">FDA- unspecified or adult dependent on therapy<break/>EMA &#x2013; not recommended under<break/>age 18 and older</td>
<td valign="top" align="left">resectable</td>
<td valign="top" align="left">Neoadjuvant treatment</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Not determined</td>
<td valign="top" align="left">platinum-doublet chemotherapy</td>
<td valign="top" align="left">Opdivo + chemo vs chemo<break/>2 years<break/>83 % vs 71 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">TPS &#x2265;1%</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">ipilimumab</td>
<td valign="top" align="left">Yervoy + Opdivo vs chemo<break/>5 years<break/>24 % vs 14 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic or recurrent</td>
<td valign="top" align="left"/>
<td valign="top" align="left">no</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">ipilimumab and 2 cycles of platinum-doublet chemotherapy</td>
<td valign="top" align="left">Yervoy + Opdivo + chemo vs chemo<break/>3 years<break/>25 % vs 15 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic with progression</td>
<td valign="top" align="left"/>
<td valign="top" align="left">no</td>
<td valign="top" align="left">yes</td>
<td valign="top" align="left">Platinum based progression</td>
<td valign="top" align="left">Opdivo + chemo vs chemo<break/>5 years<break/>13,4 % vs 2,6 %</td>
</tr>
<tr>
<td valign="top" rowspan="5" align="left">PD-L1</td>
<td valign="top" rowspan="5" align="left">Tecentriq</td>
<td valign="top" rowspan="5" align="left">FDA &#x2013; adult<break/>EMA - adult</td>
<td valign="top" align="left">stage II to IIIA</td>
<td valign="top" align="left">adjuvant treatment following resection</td>
<td valign="top" align="left">TPS &#x2265;1%</td>
<td valign="top" align="left">Not determined</td>
<td valign="top" align="left">Single agent therapy following platinum based chemotherapy</td>
<td valign="top" align="left">Tecentriq vs best supportive care<break/>4 years<break/>79,3 % vs 70,9 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">TPS &#x2265;50% and presence of IC &#x2265;10%</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Single agent therapy</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">metastatic non-squamou</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">bevacizumab, paclitaxel, and carboplatin,</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">metastatic non-squamou</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">paclitaxel protein-bound and carboplatin</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">metastatic</td>
<td valign="top" align="left"/>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Yes with disease progression</td>
<td valign="top" align="left">Single agent</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">PD-L1</td>
<td valign="top" align="left">Imfinzi</td>
<td valign="top" align="left">FDA &#x2013; adult<break/>EMA - adult</td>
<td valign="top" align="left">unresectable Stage III whose disease has not progressed following concurrent platinum-based chemotherapy and radiation therapy</td>
<td valign="top" align="left"/>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Not determined</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Imfinzi vs chemoradiotherapy<break/>5 years<break/>43 % vs 33 %</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">CTLA-4</td>
<td valign="top" rowspan="2" align="left">Yervoy</td>
<td valign="top" rowspan="2" align="left">FDA &#x2013; adult<break/>EMA - adult</td>
<td valign="top" align="left">metastaic</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">TPS &#x2265;1%</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">nivolumab</td>
<td valign="top" align="left">Yervoy + Opdivo vs chemo<break/>5 years<break/>24 % vs 14 %</td>
</tr>
<tr>
<td valign="top" align="left">metastatic or recurrent</td>
<td valign="top" align="left">First line treatment</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">Nivolumab and 2 cycles of platinum-doublet chemotherapy</td>
<td valign="top" align="left">Yervoy + Opdivo + chemo vs chemo<break/>3 years<break/>25 % vs 15 %</td>
</tr>
<tr>
<td valign="top" align="left">CTLA-4</td>
<td valign="top" align="left">Imjudo</td>
<td valign="top" align="left">FDA &#x2013; adult<break/>EMA - adult</td>
<td valign="top" align="left">metastaic</td>
<td valign="top" align="left"/>
<td valign="top" align="left">no</td>
<td valign="top" align="left">no</td>
<td valign="top" align="left">durvalumab and platinum-based chemotherapy</td>
<td valign="top" align="left">Imjudo + Imfinzi vs Sorafenib)<break/>3 years<break/>30 % vs 20 %</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Nivolumab (Opdivo, Bristol-Myers Squibb Company), IgG4 anti-PD-1 monoclonal antibody was approved by the FDA and EMA (2015) for treatment of both squamous and non-squamous NSCLC, and as second-line therapy in patients with metastatic NSCLC (<xref ref-type="bibr" rid="B153">153</xref>). In, 2020, nivolumab was approved in combination with Ipilimumab as first-line treatment for patients with metastatic NSCLC whose tumor cells express PD-L1&#x2265;1%. On March 4, 2022, the FDA and EMA approved nivolumab with platinum-doublet chemotherapy in adult patients with resectable NSCLC in the neoadjuvant setting (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>).</p>
<p>Cemiplimab (Libtayo, Regeneron Pharmaceuticals, Inc., and Sanofi) is a monoclonal IgG4 antibody against PD-1. The FDA and EMA approved Libtayo monotherapy (if PD-L1 expression is &#x2265; 50% of tumor cells) or in combination with chemotherapy (PD-L1 1-49%) as first-line therapy for adult NSCLC patients who express PD-L1 (in &#x2265;50% tumor cells), with no EGFR, ALK or ROS1 aberrations, and who have locally advanced or metastatic NSCLC and are not candidates for definitive chemoradiation therapy.</p>
<p>Unfortunately, PD-1 inhibitor treatment can cause severe side effects of immune origin - immune-related adverse events (irAEs), such as hepatitis, colitis, and skin disorders. However, irAEs have been reported to be associated with good clinical outcomes while causing treatment discontinuation and death (<xref ref-type="bibr" rid="B154">154</xref>&#x2013;<xref ref-type="bibr" rid="B157">157</xref>).</p>
</sec>
<sec id="s2_1_2">
<title>Anti-PD-L1 antibodies</title>
<p>Atezolizumab (Tecentriq, Genentech, Inc.) is a monoclonal human IgG1 antibody. In, 2016, the FDA approved Atezolizumab as a therapy for patients with metastatic NSCLC who have experienced disease progression during or following platinum-containing chemotherapy, and if their tumor has EGFR or ALK gene abnormalities. Tecentriq is currently used in combination with Avastin (bevacizumab), paclitaxel and carboplatin (chemotherapy), for the initial (first-line) treatment of individuals with metastatic NSCLC with no EGFR or ALK genomic tumor aberrations. Additionally, it is used as monotherapy for first-line treatment of adult patients with metastatic NSCLC whose tumors have a PD-L1 expression in &#x2265; 50% tumor cells or &#x2265; 10% tumor-infiltrating immune cells and lacks EGFR or ALK genomic tumor aberrations. In, 2021, the FDA approved Tencentriq as an adjuvant treatment for patients with stage II to IIIA NSCLC whose tumors have PD-L1 expression on &#x2265; 1% of tumor cells, as determined by an FDA-approved VENTANA PD-L1 (SP263) assay (Ventana Medical Systems, Inc.), following resection and platinum-based chemotherapy.</p>
<p>Durvalumab (Imfinzi, AstraZeneca Inc.) is a monoclonal anti-PD-L1 IgG1 kappa antibody that was approved in, 2018 by the FDA and EMA for treating patients with stage III NSCLC whose tumors cannot be surgically removed and whose cancer has not progressed after chemotherapy and radiation treatment. Nowadays, 141 clinical trials are testing Durvulumab in other stages of NSCLC individually or in combination with other drugs (source:ClinicalTrials.gov) (<xref ref-type="bibr" rid="B158">158</xref>).</p>
<p>Avelumab (Bavencio., EMD Serono, Inc. and Pfizer, Inc.) is a human monoclonal IgG1 antibody, which has been approved for the treatment of metastatic Merkel cell carcinoma and is used in therapy against advanced urothelial carcinoma. Currently, 10 ongoing clinical trials are testing Avelumab in NSCLC patients (source: ClinicalTrials.gov). To evaluate PD-L1, Dako PD-L1 IHC 22C3 pharmDx assay and Dako PD-L1 IHC 73-10 assay are used as quantitative evaluators (<xref ref-type="bibr" rid="B159">159</xref>).</p>
<p>The effectiveness of anti-PD-1/PD-L1 treatment is tightly connected with glycosylation of PD-1/PD-L1, which is crucial for proper PD-1 and PD-L1 binding. Therapeutic antibodies such as Avelumab, Atezolizumab and Durvalumab recognize the glycosylated form of PD-L1 in contrast to diagnostic antibodies which favor the non-glycosylated form of PD-L1 (<xref ref-type="bibr" rid="B160">160</xref>). Most commercially available antibodies are produced to recognize antigens or recombinant proteins that are expressed in bacterial or other hosts; however, this does not provide the proper glycosylation present in mammalian cells. Removing the glycosylation moieties may help to overcome the steric hindrance and enable more accurate stratification of patients. Lee et&#xa0;al. have demonstrated that the diagnostic antibody clone -8, which is widely used to detect PD-L1 expression and to evaluate formalin-fixed paraffin-embedded (FFPE) tissue samples, has limited recognition of heavily glycosylated PD-L1 forms, which may result in false negative scoring of patients (<xref ref-type="bibr" rid="B161">161</xref>). PNGase-treated lung cells showed increased immunofluorescence signal (detected by ELISA assay) compared to untreated samples. In 14% of FFPE tissue samples, PD-L1 TPS was increased from 1% to more than 49% after deglycosylation. This may indicate that certain evaluations using IHC 28-8 may bring false-negative results. Thus, selecting the appropriate PD-L1 diagnostic strategy may affect the therapeutic strategy for the patients and their chances of survival (<xref ref-type="bibr" rid="B161">161</xref>).</p>
</sec>
<sec id="s2_1_3">
<title>Anti-CTLA-4 antibodies</title>
<p>Ipilimumab (Yervoy, Bristol-Myers Squibb Company) is a human CTLA-4-blocking antibody approved by the FDA and EMA in, 2020. It is used in combination with nivolumab and 2 cycles of platinum-based chemotherapy for first-line treatment of metastatic NSCLC in adults whose tumors express PD-L1 (&#x2265;1%) and have no EGFR and ALK mutations (ClinicalTrials.gov Identifier: NCT02658890).</p>
<p>Tremelimumab (Imjudo, AstraZeneca, Inc.) is a human monoclonal antibody, approved by the FDA and EMA, that blocks the activity of CTLA-4 and thus activates the anti-tumor immune response. In September, 2021, AstraZeneca showed that combinatory treatment of Imfinzi (Durvalumab) and Tremelimumab when added to platinum-based chemotherapy, improved overall survival (OS) and progression-free survival compared to chemotherapy alone in first-line treatment of patients with metastatic NSCLC (<xref ref-type="bibr" rid="B162">162</xref>).</p>
</sec>
</sec>
<sec id="s2_2">
<title>Antibodies - future directions in antibody therapies in NSCLC</title>
<p>Standard anti-PD-1/PD-L1 therapy brings lasting benefit only to a certain number of patients (<xref ref-type="bibr" rid="B163">163</xref>, <xref ref-type="bibr" rid="B164">164</xref>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>), therefore a number of combinations of antibody therapy with another type of treatment are currently being developed. Monoclonal antibodies targeting PD-1 or PD-L1 are commonly used in combination with chemotherapy and radiotherapy in treating NSCLC (KEYNOTE-189, Impower130). Other strategies that involve the use of PD-1/PD-L1 inhibitors in combination with other treatments are also being tested in clinical trials. These include the use of telomerase inhibitors. Telomerase activation is a fundamental feature of cellular immortalization and it is considered a crucial step in carcinogenesis. Its activity has been detected in more than 90% of all cancers. The telomerase peptide vaccine UV1 induces Th1 immune response targeting tumor cells and is used with pembrolizumab (anti-PD-1) in a phase-I clinical trial (NCT03538314), with nivolumab (anti-PD-1) and ipilimumab in two randomized phase II clinical trials in malignant melanoma (NCT04382664) and mesothelioma (ClinicalTrials.gov Identifier: NCT04300244), with Durvalumab (anti-PD-L1) and Olaparib (PARP inhibitor) in relapsed ovarian cancer (ClinicalTrials.gov Identifier: NCT04742075) and with Pembrolizumab in head and neck cancer (ClinicalTrials.gov Identifier: NCT05075122). In NSCLC, there are ongoing clinical trials (ClinicalTrials.gov Identifier: NCT02846103, NCT02818426), investigating the effect of UV1 vaccines on NSCLC progression.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>PD-1 and PD-L1 in tumor microenvironment. PD-1 is expressed on immune cells, whereas tumor cells could present both PD-L1 and PD-1. Interaction of PD-L1 on tumor cells with PD-1 on immune cells suppresses immune cells. If tumor cells express both PD-L1 and PD-1, they inhibit each other similarly to the inhibition of immune cells. Anti-PD-1 antibodies block the suppression of immune cells but simultaneously could block the inhibitory action of PD-1 on tumor cells and thus support tumor cell proliferation (<xref ref-type="bibr" rid="B165">165</xref>). The anti-PD-L1 and anti-PD1 treatment of NSCLC can exhibit a positive therapeutic effect if the high expression of PD-L1 on tumor cells and/or immune cells is detected (<xref ref-type="bibr" rid="B101">101</xref>). However, only 20% of NSCLC patients benefit from anti-PD-1 therapy with progression-free survival of 22 weeks (<xref ref-type="bibr" rid="B163">163</xref>), emphasizing the need for assessment of PD-1 on tumor cells.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-15-1342086-g004.tif"/>
</fig>
<p>There are several clinical studies introducing monoclonal antibody targeting IL-1&#x3b2; Canakinumab (Ilaris, Novartis) into NSCLC treatment. Canakinumab was approved by FDA for the treatment of Periodic Fever Syndromes, active Still&#x2019;s disease, and gout flares. Nowadays Canakinumab is used in ongoing studies in combination with Durvalumab (ClinicalTrials.gov Identifier: NCT04905316), Pembrolizumab (ClinicalTrials.gov Identifier: NCT03968419), Docetaxel (ClinicalTrials.gov Identifier: NCT03626545), or in combination with cisplatin, carboplatin and Pemetrexed (ClinicalTrials.gov Identifier: NCT03064854).</p>
<p>Since PD-1, PD-L1 monotherapy is insufficient and high co-expression of PD-L1 and IDO proteins was described in NSCLC, several clinical trials proposed dual therapy blocking these proteins in NSCLC are ongoing. There is a clinical trial using the first-in-class immune-modulatory vaccine IO102-IO103 in combination with pembrolizumab (NCT05077709). Vaccine IO102-IO103 activates production of IDO/PD-L1 specific T-cells targeting tumor cells expressing IDO and/or PD-L1. Next clinical trial use combination of an anti-IDO-1 agent (LY3381916) administered alone or in combination with anti-PD-L1 checkpoint antibody (LY3300054) (ClinicalTrials.gov Identifier: NCT03343613), next use combination of Epacadostat (IDO inhibitor) with Pembrolizumab and chemotherapy (ClinicalTrials.gov Identifier: NCT03085914, NCT03322540, NCT03322566), and clinical trial administred combination of BMS-986205 (IDO inhibitor) with Nivolumab and in combination with both Nivolumab and Ipilimumab (ClinicalTrials.gov Identifier: NCT02658890).</p>
<p>TMB is a factor that strongly individualizes each tumor. Different levels of TMB in tumor tissue compared to blood samples could be predictors for development of clinical response. This feature is targeted in clinical trial NCT04392505. Not only TMB, but also epigenetic changes play a key role in the development and progression of cancer. Epigenetic immune modeling of cancer cells is their hallmark, as it impairs functional immune recognition of malignant cells by the immune system. Because of this, there is potential for epigenetic drugs, including DNA hypomethylating agents, to sensitize tumor cells to emerging immunotherapies. Another promising clinical trial is combination of Nivolumab with Ipilimumab and Guadecitabine (hypomethylating agent) or Nivolumab combined with Ipilimumab (ClinicalTrials.gov Identifier: NCT04250246). An ongoing clinical study combining Azacytidine, a hypomethylating drug, Entinostat, inhibiting histone deacetylase with anti-PD-1 therapy &#x2013; Nivolumab, is under investigation (ClinicalTrials.gov Identifier: NCT01928576) (<xref ref-type="bibr" rid="B83">83</xref>, <xref ref-type="bibr" rid="B166">166</xref>). Secondary NSCLC after cancer recurrence with anti-PD1 therapy has much higher promoter methylation compared to primary cancerous or healthy tissue, the combination of Azacytidine, with Entinostat and Nivolumab is very promising.</p>
</sec>
</sec>
<sec id="s3">
<title>Future perspectives on treatment</title>
<sec id="s3_1">
<title>Bispecific antibodies</title>
<p>Unlike monospecific antibodies, bispecific antibodies recognize two different epitopes on the same or different antigens. Accordingly, a bispecific antibody must have two different heavy chains and two different light chains (<xref ref-type="bibr" rid="B167">167</xref>).</p>
<p>In approximately 70-80% of non-responding patients with melanoma, NSCLC, and renal cell carcinoma, a lack of activated T cells is suggested. Therapies boosting T cell activity may significantly improve their treatment efficacy. Horn et&#xa0;al. have designed bispecific T cell engagers (BiTEs) that activate T cells through CD3 and target activated T cells to tumor-expressed antigen PD-L1 and the BiTEs also activate healthy donor CD4<sup>+</sup> and CD8<sup>+</sup> T cells that are specifically cytotoxic for PD-L1<sup>+</sup> tumor cells (<xref ref-type="bibr" rid="B168">168</xref>). Another bispecific antibody (MCLA-145) targets CD137 and PD-L1. The result of its effect is the upregulation of CD137 (on T cells) and PD-L1 (on tumor cells and APCs), the release of pro-inflammatory cytokines and activation of effector T cells targeting tumor cells (<xref ref-type="bibr" rid="B169">169</xref>).</p>
</sec>
<sec id="s3_2">
<title>Nanobodies, probodies, affibodies and DARPINs</title>
<p>Nanobodies, probodies, affibodies and DARPINs are small molecules that retain the ability of antibodies to recognize antigens and overcome the size limitations of monoclonal antibodies.</p>
<p>A nanobody is an antibody fragment consisting of a single monomeric variable antibody domain with high solubility, high stability and excellent tissue penetration <italic>in vivo</italic> (<xref ref-type="bibr" rid="B170">170</xref>). In addition, the low molecular weight of nanobodies offers the advantage that they can be eliminated by the kidneys, making them highly suitable for treatment due to their low cytotoxicity. For example, Nanobody KN035 (Envafolimab, Tracon Pharmaceuticals) strongly induced T-cell responses and inhibited tumor growth. In terms of effectiveness against tumors, it has been proved to be equal to Durvalumab (<xref ref-type="bibr" rid="B171">171</xref>). KN035 has been approved in 10 clinical trials (source ClinicalTrials.gov).</p>
<p>Probodies are therapeutics, produced as an antibody prodrug, that are activated by proteases occurring uniquely in tumors, which limits their activity on TME and minimizes extra-tumor toxicity (<xref ref-type="bibr" rid="B172">172</xref>). There are currently no FDA or EMA-approved probodies. The furthest along in development is CX-072 (Pacmilimab), which is a probody immunotherapy that targets PD-L1. An <italic>in vivo</italic> study conducted on mice showed that Pacmilimab accumulated in tumors with only limited uptake in other non-cancerous tissues expressing PD-L1 (<xref ref-type="bibr" rid="B173">173</xref>, <xref ref-type="bibr" rid="B174">174</xref>). The clinical trial investigating the suitable dose of CX-072 for patients with solid tumors and lymphomas was completed (ClinicalTrials.gov Identifier: NCT03013491).</p>
<p>Nanobodies and affibodies (originally derived from immunoglobulin binding Z-domain from staphylococcal protein A (<xref ref-type="bibr" rid="B175">175</xref>)) can be used as non-blocking nanobody-based radioisotope binding tracers, which possess different binding epitopes compared to monoclonal antibodies. This feature is important during monitoring anti-PD-L1 therapy because non-interference between radiotracer and any anti-PD-L1 therapeutic allows for improving the imaging quality (resolution and quantification) and does not affect the activity of the therapeutic agent (<xref ref-type="bibr" rid="B176">176</xref>).</p>
<p>Designed ankyrin repeat proteins (DARPins) are derived from the most common natural protein&#x2013;protein interaction platform&#x2013; ankyrin repeats (<xref ref-type="bibr" rid="B177">177</xref>). The functionality of DARPins targeting PD-1 has been compared with clinically used anti-PD-1 antibodies, i.e., pembrolizumab and nivolizumab, and found comparable (<xref ref-type="bibr" rid="B178">178</xref>). MP0250 is the first DARPin in clinical studies (ClinicalTrials.gov Identifier: NCT03136653, NCT03418532, NCT02194426). It has binding specificities for vascular endothelial growth factor A (VEGF-A), hepatocyte growth factor (HGF) and human serum albumin (HSA). Since MP0250 can increase the efficacy of anti-PD1 therapy in mice, it has the potential for NSCLC treatment (<xref ref-type="bibr" rid="B179">179</xref>).</p>
</sec>
<sec id="s3_3">
<title>Antibody-drug conjugates</title>
<p>Antibody-drug conjugates (ADCs) are a prospective class of therapeutic agents for NSCLC treatment. ADCs recognize the specific antigen and then selectively release a highly toxic cytostatic agent or toxin at the tumor site. ADCs already have applications in the treatment of other malignancies, such as HER2-positive breast cancer. Due to the occasional occurrence of HER2 amplifications in NSCLC, the first successful trials using trastuzumab-deruxtecan (Destiny-Lung02) have already been conducted (<xref ref-type="bibr" rid="B52">52</xref>). Other molecules are in clinical trials.</p>
</sec>
<sec id="s3_4">
<title>Future direction in immunoscoring for NSCLC diagnostics, prediction and therapy response</title>
<p>Antibodies targeting immune checkpoints increase the OS of NSCLC patients. However, not all patients receiving immunotherapy respond appropriately, break immune suppression and go into remission. This may be connected with insufficient immunoscoring and profiling of cancer patients. Nowadays, immunoscoring of NSCLC patients is individual for different types of NSCLC (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). IHC is not required in all stages and types of NSCLC as its positivity is closely connected with appropriate tissue collection and potential tumor heterogeneity. The collected biopsy can be false negative and the patient can be falsely inappropriate for antibody therapy. As tumor development is linked to the presence of serum tumor markers, their justification can be a valuable tool for selecting the appropriate treatment. CEA, CA15.3, SCC, CYFRA 21-1, NSE, and ProGRP are tumor markers assessed in NSCLC patients, however, their presence does not correlate with the efficiency of immune checkpoint therapy. The current research describes new markers and associating them with immune checkpoint deficiency.</p>
<p>Currently, the only available therapy for reactivating the immune system involves antibodies that block the interaction between PD-1/PD-L1 or CTLA-4. The efficiency of this therapy is connected not only with proper patient selection, but also with the size of the antibody and the density of the tumor tissue. Nanobodies, probodies, affibodies and DARPINs, which target immune checkpoints, are very promising tools due to their high binding affinity and small size. Their research is ongoing and some of them are currently in clinical trials.</p>
</sec>
<sec id="s3_5">
<title>The methodology for the literature search and article inclusion criteria</title>
<p>A systematic literature review was conducted using PubMed and Web of Science without publication dates limitation using key search terms including: NSCLC (non-small cell lung cancer), immunity/immune, immune checkpoint, PD-1, PD-L1 and others, returning over 10,000 publications. Focus was placed on clinical studies measuring the efficacy of immune checkpoint therapy in NSCLC using the search through ClinicalTrials.gov database returning 1 555 studies. The authors screened resulting studies independently for relevance.</p>
</sec>
</sec>
<sec id="s4" sec-type="author-contributions">
<title>Author contributions</title>
<p>LR: Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. JM: Writing &#x2013; original draft. PC: Writing &#x2013; original draft. PJ: Writing &#x2013; original draft. OF: Writing &#x2013; original draft. J&#x160;: Writing &#x2013; original draft. PM: Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. MR: Writing &#x2013; original draft, Writing &#x2013; review &amp; editing.</p>
</sec>
</body>
<back>
<sec id="s5" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. The research was supported by the Ministry of Health, Czech Republic grant NU21-03-00372 (MR, J&#x160;, PM) and a conceptual development of research organization grant MHCZ-DRO, FNOL, 00098892 (MR), by the Ministry of School, Youth, and Sport, Czech Republic grant CEREBIT CZ. 02.1.01/0.0/0.0/16_025/0007397 (MR), and Palacky University grant IGA_LF_2023_010 (MR). PM received support from the Institute of Biotechnology of the Czech Academy of Sciences v.v.i. by Institutional Research Concept RVO: 86652036.</p>
</sec>
<sec id="s6" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s7" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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