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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2023.1137659</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Fibroblast heterogeneity: Keystone of tissue homeostasis and pathology in inflammation and ageing</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Gauthier</surname>
<given-names>Vincent</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2189930"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kyriazi</surname>
<given-names>Maria</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2213477"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Nefla</surname>
<given-names>Meriam</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pucino</surname>
<given-names>Valentina</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Raza</surname>
<given-names>Karim</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1084064"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Buckley</surname>
<given-names>Christopher D.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/76629"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Alsaleh</surname>
<given-names>Ghada</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/445718"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Botnar Institute for Musculoskeletal Sciences, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences (NDORMS), University of Oxford</institution>, <addr-line>Oxford</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>The Kennedy Institute of Rheumatology, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences (NDORMS), University of Oxford</institution>, <addr-line>Oxford</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Institute of Inflammation and Ageing, College of Medical and Dental Sciences, University of Birmingham</institution>, <addr-line>Birmingham</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Faculty of Medical Sciences, Newcastle University</institution>, <addr-line>Newcastle-upon-Tyne</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Department of Rheumatology, Sandwell and West, Birmingham Hospitals NHS Trust</institution>, <addr-line>Birmingham</addr-line>, <country>United Kingdom</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Mojca Frank Bertoncelj, BioMed X Institute, Germany</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Aleksander M. Grabiec, Jagiellonian University, Poland; Markus H. Hoffmann, University of L&#xfc;beck, Germany; Andreas Ramming, University of Erlangen Nuremberg, Germany</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Christopher D. Buckley, <email xlink:href="mailto:christopher.buckley@kennedy.ox.ac.uk">christopher.buckley@kennedy.ox.ac.uk</email>; Ghada Alsaleh, <email xlink:href="mailto:ghada.alsaleh@ndorms.ox.ac.uk">ghada.alsaleh@ndorms.ox.ac.uk</email>
</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Autoimmune and Autoinflammatory Disorders: Autoimmune Disorders, a section of the journal Frontiers in Immunology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>28</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1137659</elocation-id>
<history>
<date date-type="received">
<day>04</day>
<month>01</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>14</day>
<month>02</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Gauthier, Kyriazi, Nefla, Pucino, Raza, Buckley and Alsaleh</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Gauthier, Kyriazi, Nefla, Pucino, Raza, Buckley and Alsaleh</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Fibroblasts, derived from the embryonic mesenchyme, are a diverse array of cells with roles in development, homeostasis, repair, and disease across tissues. In doing so, fibroblasts maintain micro-environmental homeostasis and create tissue niches by producing a complex extracellular matrix (ECM) including various structural proteins. Although long considered phenotypically homogenous and functionally identical, the emergence of novel technologies such as single cell transcriptomics has allowed the identification of different phenotypic and cellular states to be attributed to fibroblasts, highlighting their role in tissue regulation and inflammation. Therefore, fibroblasts are now recognised as central actors in many diseases, increasing the need to discover new therapies targeting those cells. Herein, we review the phenotypic heterogeneity and functionality of these cells and their roles in health and disease.</p>
</abstract>
<kwd-group>
<kwd>fibroblast</kwd>
<kwd>health</kwd>
<kwd>diseases</kwd>
<kwd>ageing</kwd>
<kwd>inflammation</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="172"/>
<page-count count="15"/>
<word-count count="8407"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Following their discovery in 1858 by Rudolf Virchow, and their description as fibroblasts by Ernst Ziegler in 1895, fibroblasts have been observed in anatomically diverse connective tissues, with a distinct spindle-shaped morphology, delineating them from the other structural cells (<xref ref-type="bibr" rid="B1">1</xref>&#x2013;<xref ref-type="bibr" rid="B3">3</xref>). Their characterization has been historically driven by their distinct morphology and the absence of leucocyte, epithelial and vascular lineage markers (<xref ref-type="bibr" rid="B4">4</xref>). Identifying the functionality and prevalence of distinct populations of fibroblasts has led to an elucidation of their differential roles in pathological states and insights into how they may be therapeutically targeted. In the following sections, we summarize the origins, tissue-specific types, heterogeneity, and function of fibroblasts identified to date, with a primary focus on their roles in inflammation and ageing. We illustrate how impairments in fibroblast biology contribute to tissue and organismal ageing and examine how recent advances set the groundwork for therapeutically targeting these cells.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Origins and functional heterogeneity of fibroblasts across the tissues</title>
<sec id="s2_1">
<label>2.1</label>
<title>Origins and tissue-specific types</title>
<p>Recent technological advances have allowed a better understanding of the origin of fibroblast (summarised in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). During early embryonic development, gastrulation forms three primary layers, so-called ectoderm, mesoderm, and endoderm. These layers give rise to specific tissues and organs in the developing embryo. During the process of gastrulation, the epiblast gives rise to two main cell types: the primary mesenchyme and the ectoderm. The primary mesenchyme is made up of primary fibroblasts, and further differentiation of these cells leads to the development of the endoderm and mesoderm. The mesoderm gives rise to various cell types, including endothelial cells, pericytes, adipocytes, and mesenchyme. Mesenchymal stromal cells may also develop from the mesoderm and help create a supportive environment in certain tissues. In adults, the mesenchyme becomes quiescent fibroblasts known as resident quiescent fibroblasts (RQF). Together, epithelial cells, endothelial cells, perivascular cells, adipocytes, and fibrocytes from the bone marrow, participate in the generation of fibroblast-like cells during injury through processes known as Type 2 and Type 3 epithelial-to-mesenchymal transitions (EMT) (<xref ref-type="bibr" rid="B5">5</xref>). In adults the mesenchyme comprises resident fibroblasts that support ECM formation and remain quiescent in the absence of stimulation. Thus, fibroblasts are responsible for tissue homeostasis and contribute to extrinsic tissue ageing (<xref ref-type="bibr" rid="B5">5</xref>). Transcriptional regulation determines the localization of resident fibroblasts and defines their distribution through development. Additionally, fibroblasts are imprinted with positional identities laid down during development and maintained by the epigenetic regulation of homeobox transcription factors, so-called HOX genes, responsible for positional patterning during development (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B7">7</xref>). Although all fibroblast subsets share a mesenchymal origin, their differences rely upon their localization, functionality, and cellular state. The different fibroblast types defined by their tissue specific gene enrichment and marker expression allows the depiction of fibroblast subtypes in tissues including the heart, gut, lungs, colon, skin, and joints. Cardiac/Myocardial fibroblasts express atrial and ventricular markers (<xref ref-type="bibr" rid="B8">8</xref>). Fibroblasts found in the lungs comprise lipofibroblasts (LipFB), myofibroblasts (MyoFB), alveolar (AlvFB) and adventitial fibroblasts (AdvFB) (<xref ref-type="bibr" rid="B9">9</xref>). The skin includes three fibroblast subtypes, type A (FB-A), responsible for dermal cell and ECM homeostasis, type B (FB-B), regulating immune surveillance and inflammation and type C (FB-C), comprising specialized subpopulations (<xref ref-type="bibr" rid="B10">10</xref>). Recent evidence also suggests the expression of myofibroblasts and pericytes, as well as a distinct population of fibroblast-like cells expressed in the colon that are associated with health status or with the development of inflammatory bowel disease (IBD) and colitis (<xref ref-type="bibr" rid="B11">11</xref>). Gut fibroblasts, including interstitial fibroblasts, are characterized by the expression of differential markers depending on their localization within the gut (e.g., villus, crypt). In healthy adult joints, fibroblast-like synoviocytes here termed synovial fibroblasts (SFs) are observed in both the synovial lining layer (LL) and the sub-lining layer (SL), expressing location-specific proteins and cytokines, and associated with either inflammatory or destructive diseases. Therefore, one could logically think that different fibroblast subsets exist in both healthy and diseased states. Indeed, recent data published by Buechler et&#xa0;al. indicate that universal and specialized fibroblast subsets, so-called steady state subsets, can exist together with activated, perturbed state subsets, within the same tissue (<xref ref-type="bibr" rid="B12">12</xref>). Understanding the different fibroblast markers observed in steady and perturbed states is thus likely to further our understanding of the mechanistic roles of these cells in the co-existing microenvironment.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Origin and diversity of tissue resident fibroblast. During the early stages of development, the primary mesenchyme is mad up of primary fibro plats, which eventually give rise to the mesoendoderm. The mesoderm also gives rise to mesenchyme stromal or stem cells (MSCs), which can populate specific areas such as the bone marrow and adipose tissue. In addition, the mesoderm produces endothelial cells (ECs), adipocytes, and mesenchyme, which is where resident fibroblasts originate. Environmental cues and transcription of HOX genes give tissue localization instruction to resident fibroblasts which leads to their specific roles. Fibroblasts populate specific niches in different tissue supporting roles including cell proliferation, ECM secretion, immune cells, and maturation. According to the tissue and environmental needs fibroblasts develop specific function, (e.g., synovial fluid secretion).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1137659-g001.tif"/>
</fig>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Heterogeneity across the tissues</title>
<p>Fibroblasts are characterized by their secretion of ECM molecules including elastin, fibronectin, periostin, laminins, proteoglycans, microfibrillar proteins, and fiber- or sheet-forming collagens, creating the &#x201c;matrisome&#x201d; and which in turn influences their function. Since no totally lineage specific markers have been identified, fibroblasts are captured using archetypal mesenchymal markers, including vimentin, PDGFR&#x3b1;/&#x3b2; (platelet-derived growth factor receptor-alpha and -beta), PDPN (podoplanin), CD90 (THY-1), FAP (fibroblast activation protein) marking activated fibroblasts, and &#x3b1;SMA (&#x3b1;-smooth muscle actin) typically expressed in myofibroblasts, the fibroblast type that is activated in response to injury and is responsible for the tissue repair (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B13">13</xref>&#x2013;<xref ref-type="bibr" rid="B15">15</xref>). However, these markers are not ubiquitously expressed upon all the fibroblasts, diminishing our understanding of the heterogeneity of this cell type.</p>
<p>Recent technological advances, including single cell RNA sequencing (scRNA-seq) have begun to reveal fibroblast heterogeneity and provide insights into their roles in disease (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). However, whether subtype heterogeneity emerges from broad transcriptional programming (intrinsic triggers), or from other cell types in an extrinsic context dependant manner still remains to be established. A recent study in a murine model suggests the existence of <italic>dpt+</italic> universal fibroblasts providing functional plasticity to activated fibroblasts across tissues (<xref ref-type="bibr" rid="B12">12</xref>). This supports the idea that fibroblast phenotype depends on their activation state in addition to potential tissue-specific cues. The authors propose that fibroblasts exist in a universal and specialized state, called steady state, or an activated state during perturbation (inflammation, wound healing, fibrosis, or cancer). Consequently, fibroblast identity changes depending on the surrounding environment.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Fibroblasts subsets identified in health or disease and their localization in the tissues.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">Fibroblasts subsets</th>
<th valign="middle" align="center">Tissues</th>
<th valign="middle" align="center">Localization</th>
<th valign="middle" align="center">Healthy</th>
<th valign="middle" align="center">Diseases</th>
<th valign="middle" align="center">Function</th>
<th valign="middle" align="center">References</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">THY1+/HLA-DR<sup>HI</sup>
</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Synovium</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Sublining/perivascular</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">No</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">RA</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Inflammation in RA</td>
<td valign="middle" align="left" style="background-color:#ffffff">Zhang et&#xa0;al. (<xref ref-type="bibr" rid="B16">16</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">Croft et&#xa0;al. (<xref ref-type="bibr" rid="B17">17</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">CD55+PRG4+CLIC5+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Synovium</td>
<td valign="middle" align="left" style="background-color:#ffffff">Lining layer</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Disturbed in RA</td>
<td valign="middle" align="left" style="background-color:#ffffff">Synovial fluid secretionBone and cartilage damage in RA</td>
<td valign="middle" align="left" style="background-color:#ffffff">Zhang et&#xa0;al. (<xref ref-type="bibr" rid="B16">16</xref>)Croft et&#xa0;al. (57&#xb0;</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">ACTA2+ myofibroblasts</td>
<td valign="middle" align="left" style="background-color:#ffffff">lung</td>
<td valign="middle" align="left" style="background-color:#ffffff">Sub-epithelial regions of large airways</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Expended in pulmonary fibrosis</td>
<td valign="middle" align="left" style="background-color:#ffffff">ECM secretion</td>
<td valign="middle" align="left" style="background-color:#ffffff">Habermann et&#xa0;al. (<xref ref-type="bibr" rid="B18">18</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">PLIN2+</td>
<td valign="middle" align="left" style="background-color:#ffffff">lung</td>
<td valign="middle" align="left" style="background-color:#ffffff">Interstitial region</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Expended in pulmonary fibrosis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Phospholipid storage</td>
<td valign="middle" align="left" style="background-color:#ffffff">Habermann et&#xa0;al. (<xref ref-type="bibr" rid="B18">18</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">WISP2+MFAP5+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Skin</td>
<td valign="middle" align="left" style="background-color:#ffffff">Reticular dermis (RD)</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">structural and ECM organization</td>
<td valign="middle" align="left" style="background-color:#ffffff">Janson et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">APCDD1+ COL18A1+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Skin</td>
<td valign="middle" align="left" style="background-color:#ffffff">Papillary dermis (PD)</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">Structural and ECM organization</td>
<td valign="middle" align="left" style="background-color:#ffffff">Janson et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">COL6A5+ COL18A1+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Skin</td>
<td valign="middle" align="left" style="background-color:#ffffff">Lesion sites</td>
<td valign="middle" align="left" style="background-color:#ffffff">No</td>
<td valign="middle" align="left" style="background-color:#ffffff">Atopic dermatitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Inflammation</td>
<td valign="middle" align="left" style="background-color:#ffffff">He et&#xa0;al. (<xref ref-type="bibr" rid="B20">20</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">WTN2B+ WTN4+ RSPO3<sup>+</sup>
</td>
<td valign="middle" align="left" style="background-color:#ffffff">Gut</td>
<td valign="middle" align="left" style="background-color:#ffffff">Crypt</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">Support intestinal stem cell niche via LCR5</td>
<td valign="middle" align="left" style="background-color:#ffffff">Smillie et&#xa0;al. (<xref ref-type="bibr" rid="B21">21</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">BMP4+ BMP5+ WNT5A/B+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Gut</td>
<td valign="middle" align="left" style="background-color:#ffffff">Villi</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">Epithelium formation</td>
<td valign="middle" align="left" style="background-color:#ffffff">Smillie et&#xa0;al. (<xref ref-type="bibr" rid="B21">21</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">APCDD1+ COL18A1+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Skin</td>
<td valign="middle" align="left" style="background-color:#ffffff">Papillary dermis (PD)</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">Structural and ECM organization</td>
<td valign="middle" align="left" style="background-color:#ffffff">Janson et&#xa0;al. (<xref ref-type="bibr" rid="B19">19</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">COL6A5+ COL18A1+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Skin</td>
<td valign="middle" align="left" style="background-color:#ffffff">Lesion sites</td>
<td valign="middle" align="left" style="background-color:#ffffff">No</td>
<td valign="middle" align="left" style="background-color:#ffffff">Atopic dermatitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Inflammation</td>
<td valign="middle" align="left" style="background-color:#ffffff">He et&#xa0;al. (<xref ref-type="bibr" rid="B20">20</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">WTN2B+ WTN4+ RSPO3<sup>+</sup>
</td>
<td valign="middle" align="left" style="background-color:#ffffff">Gut</td>
<td valign="middle" align="left" style="background-color:#ffffff">Crypt</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">Support intestinal stem cell niche via LCR5</td>
<td valign="middle" align="left" style="background-color:#ffffff">Smillie et&#xa0;al. (<xref ref-type="bibr" rid="B21">21</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">BMP4+ BMP5+ WNT5A/B+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Gut</td>
<td valign="middle" align="left" style="background-color:#ffffff">Villi</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Not defined</td>
<td valign="middle" align="left" style="background-color:#ffffff">Epithelium formation</td>
<td valign="middle" align="left" style="background-color:#ffffff">Smillie et&#xa0;al. (<xref ref-type="bibr" rid="B21">21</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">SPARCL1+PTGDS+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Oral mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Buccal mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="top" align="left" style="background-color:#ffffff">Present in periodontitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Active translation</td>
<td valign="middle" align="left" style="background-color:#ffffff">Williams et&#xa0;al. (<xref ref-type="bibr" rid="B22">22</xref>)</td>
</tr>
<tr>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">COL1A1+COL1A2+POSTN+MMP2+</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Oral mucosa</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Buccal and gingival mucosa</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Potentially altered in periodontitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Structural and ECM secretion/</td>
<td valign="middle" rowspan="2" align="left" style="background-color:#ffffff">Williams et&#xa0;al. (<xref ref-type="bibr" rid="B22">22</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">organization</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">ANXA1+ IGFBP2+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Oral mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Buccal and gingival mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Present in periodontitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Regulation of leukocyte proliferation&#xa0;</td>
<td valign="middle" align="left" style="background-color:#ffffff">Williams et&#xa0;al. (<xref ref-type="bibr" rid="B22">22</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">CXCL1, 2, 8</td>
<td valign="middle" align="left" style="background-color:#ffffff">Oral mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Buccal and gingival mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Periodontitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Granulocytes migration</td>
<td valign="middle" align="left" style="background-color:#ffffff">Williams et&#xa0;al. (<xref ref-type="bibr" rid="B22">22</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">C3+ CFD+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Oral mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Buccal and gingival mucosa</td>
<td valign="middle" align="left" style="background-color:#ffffff">Yes</td>
<td valign="middle" align="left" style="background-color:#ffffff">Periodontitis</td>
<td valign="middle" align="left" style="background-color:#ffffff">Inflammation and complement activation</td>
<td valign="middle" align="left" style="background-color:#ffffff">Williams et&#xa0;al. (<xref ref-type="bibr" rid="B22">22</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">PDPN+CD34+ICAM-1+VCAM-1</td>
<td valign="middle" align="left" style="background-color:#ffffff">Salivary glands</td>
<td valign="middle" align="left" style="background-color:#ffffff">TLS</td>
<td valign="middle" align="left" style="background-color:#ffffff">No</td>
<td valign="middle" align="left" style="background-color:#ffffff">Sjogren&#x2019;s syndrome</td>
<td valign="middle" align="left" style="background-color:#ffffff">Leucocyte survival</td>
<td valign="middle" align="left" style="background-color:#ffffff">Nayar et&#xa0;al. (<xref ref-type="bibr" rid="B23">23</xref>)</td>
</tr>
<tr>
<td valign="middle" align="left" style="background-color:#ffffff">PDPN+CD34-CCL19+</td>
<td valign="middle" align="left" style="background-color:#ffffff">Salivary glands</td>
<td valign="middle" align="left" style="background-color:#ffffff">TLS</td>
<td valign="middle" align="left" style="background-color:#ffffff">No</td>
<td valign="middle" align="left" style="background-color:#ffffff">Sjogren&#x2019;s syndrome</td>
<td valign="middle" align="left" style="background-color:#ffffff">TLS organization</td>
<td valign="middle" align="left" style="background-color:#ffffff">Nayar et&#xa0;al. (<xref ref-type="bibr" rid="B23">23</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s2_2_1">
<label>2.2.1</label>
<title>Gut</title>
<p>Differential expression of the WNT/BMP pathway is observed in gut fibroblasts, providing them with location-specific properties. Indeed, WTN2B, WTN4 and DKK3 enriched fibroblasts are associated with the crypt, while BMP4, BMP5 and WNT5A/B enriched fibroblasts reside in the villus (<xref ref-type="bibr" rid="B21">21</xref>). These transcriptional and positional differences underline the role of fibroblasts in supporting other cell types in specific niches. In this context, a POSTN fibroblast population has been identified to support epithelium by expressing factors related to epithelial cell proliferation and maintenance (<xref ref-type="bibr" rid="B11">11</xref>). Similarly, within the WNT2B population, a RSPON3+ (R-spondin-3) subset supports the intestinal stem cell niche through its interaction with the LCR5 receptor, highlighting the role of fibroblasts heterogeneity in maintaining sub-compartmental function within the tissue.</p>
</sec>
<sec id="s2_2_2">
<label>2.2.2</label>
<title>Skin and dermis</title>
<p>The dermis is an important regulatory layer of the skin underlining the epidermis. It principally consists of ECM secreted by numerous fibroblasts and is divided in two regions: the papillary dermis (PD) and the reticular dermis (RD) (<xref ref-type="bibr" rid="B15">15</xref>). As in the gut, different fibroblast populations are localized in the distinct structures of the dermis. PD fibroblasts exhibit morphological differences compared to RD fibroblasts. While PD fibroblasts are thin and spindle-shaped, RD fibroblasts have a squarer shape (<xref ref-type="bibr" rid="B19">19</xref>). ScRNA-seq studies on skin biopsies identified 4 clusters of dermal fibroblasts and two subpopulations with important structural and ECM organization roles. The first, in the RD (so-called secretary-reticular), is enriched with WISP2 or MFAP5. The second sub-population (so-called secretary-papillary) is found in the PD region and expresses APCDD1 or COL18A1, previously described as papillary markers. The third population expressing Asporin (ASPN) and Periostin (POSTN) is implicated in mesenchymal regulation. The final sub-population represents a pro-inflammatory state, enriched with CCL19, APOE, or CXCL2 expression (<xref ref-type="bibr" rid="B24">24</xref>). However, poor overlap of adult dermal fibroblasts subpopulations has been observed in other scRNA-seq datasets (<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B25">25</xref>&#x2013;<xref ref-type="bibr" rid="B27">27</xref>). A comparative study on all published datasets on human skin, identified 3 mains dermal fibroblast types, type A fibroblasts implicated in ECM homeostasis and potentially in fibrotic linage, type B fibroblasts involved in inflammation and immune surveillance and type C corresponding to a specialized skin specific subpopulation such as papillary dermis fibroblasts. While disparities between datasets can be explained by variation in experimental processes, once clustered together those datasets reveal biological similarities between them. Thus, these discoveries are improving our knowledge on the heterogeneity in skin fibroblasts populations paving the way to understand potential dysregulation in diseases.</p>
</sec>
<sec id="s2_2_3">
<label>2.2.3</label>
<title>Oral mucosa</title>
<p>The oral mucosa is the first site of encountered for food, airborne antigens, and commensal microbiome. The oral cavity mucosal tissue comprises multilayer squamous epithelium divided in three main regions; the masticatory mucosa (gingiva, hard palate and dorsum of the tongue), the specialized mucosa (taste buds associated), and the lining mucosa (inside the cheeks, floor of the mouth) (<xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B29">29</xref>). Despite the constant exposure to antigens, commensals and microdamage, the oral mucosa display efficient wound healing and minimal scar formation without aberrant inflammation. This suggests meticulous regulation between the stromal compartment and the immune cells at those sites. Recently, the transcriptomic profile of gingival/oral fibroblasts reveals 5 sub populations in adult healthy gingiva and lining mucosa (<xref ref-type="bibr" rid="B22">22</xref>). One of the fibroblast cluster display collagen synthesis and ECM remodelling functions (COL1A1, COL1A2, MMP2). A second cluster expressing SPARCL1 display an active translation status. Finally, 3 clusters are associated with inflammatory signature genes: ANXA1+IGBP2+ enriched fibroblasts associated with leucocytes proliferation, CXCL1+CXCL2+CXCL8+ fibroblasts involved in granulocyte recruitment, and C3+CDF+ fibroblasts for the complement activation (<xref ref-type="bibr" rid="B22">22</xref>).</p>
</sec>
<sec id="s2_2_4">
<label>2.2.4</label>
<title>Heart</title>
<p>The heart is another fibroblast-enriched organ. Cardiac fibroblasts are responsible for the ECM remodelling, which is critical for electrical conductivity and heartbeat rhythm (<xref ref-type="bibr" rid="B30">30</xref>). Adult cardiac fibroblasts comprise myocardial, pericardial and epicardium layers, containing specialized adipose tissue and endothelial cells, respectively (<xref ref-type="bibr" rid="B30">30</xref>). These populations, revealed by single-cell transcriptomic studies in mouse, comprise two main groups and their lineage contributions are distinct. For example, <italic>Forte et&#xa0;al.</italic> discovered a small endocardial-derived fibroblast population expressing Wif1 and Dkk3 WNT signalling factors, relating to valve leaflets and endochondral specification toward the bone lineage, and a larger epicardial-derived fibroblast population presenting the expression of genes associated with metabolism, and cell migration (<xref ref-type="bibr" rid="B31">31</xref>).While other ScRNAseq studies on murine cardiac fibroblasts suggests two major sub populations based on the differential expression of Sca1. The Sca1high and Sca1low subpopulation both expressed canonical fibroblasts markers such as PDGFR&#x3b1; or Col1 and seems to have distinct adhesive and secretory phenotype. Moreover, the authors also distinguish a fibroblast population highly regulated by WNT signalling (<xref ref-type="bibr" rid="B32">32</xref>).</p>
</sec>
<sec id="s2_2_5">
<label>2.2.5</label>
<title>Lungs</title>
<p>Lung fibroblasts, like many other fibroblasts are marked by PDGFR&#x3b1; expression. Additional heterogeneity is observed within PDGFR&#x3b1;+ lung fibroblasts including a WNT subset which is also characterized by Axin2 expression (<xref ref-type="bibr" rid="B18">18</xref>). PDGFR&#x3b1; expression is increased upon Gli1+ (part of the Hedgehog signaling pathway) maturation of the Gli1+ progenitors, which label the mesenchymal lung cells, but not lipofibroblasts, and depend on Hedgehog signaling (<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B33">33</xref>). In healthy lung fibroblasts, AXIN2+ PDGFR&#x3b1;+ are located towards the alveolar niche supporting the maintenance of the stem cell niche, whereas AXIN2+ PDGFR&#x3b1;- fibroblasts, a population associated with pathogenic remodeling in disease, are positioned towards the airways (<xref ref-type="bibr" rid="B3">3</xref>). In addition, &#x3b1;SMA+ fibroblasts express Tbx4 in response to lung injury (<xref ref-type="bibr" rid="B34">34</xref>).</p>
<p>The sub-epithelial regions of large lung airways are characterized by the expression of ACAT2+ in myofibroblasts secreting ECM and which show a dysregulated expansion in pulmonary fibrosis. The interstitial regions of the lungs express PLIN2+, responsible for phospholipid storage, a subset which are also elevated in pulmonary fibrosis (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</sec>
<sec id="s2_2_6">
<label>2.2.6</label>
<title>Joints</title>
<p>The synovial membrane is histologically separate in two compartments: the lining layer and the sub-lining. Highly specific PRG4+CD55+CLIC5+ fibroblasts, are found in the synovial lining layer and are responsible for the secretion of synovial fluid (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B36">36</xref>). By contrast, in resting condition the sub-lining fibroblasts are not well defined. However, significant increase in fibroblast heterogeneity is observed in the joints of patients with active synovial inflammation, contribution to both Inflammation and bone/cartilage erosion.</p>
<p>In resting conditions, fibroblasts modulate specific tissue niches by adapting to the needs of the surrounding microenvironment. Increasing scRNA-seq data on human fibroblasts in healthy individuals are unmasking new functions of fibroblasts beside the archetypal ECM formation.</p>
</sec>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Functional characterization of fibroblasts</title>
<p>Fibroblasts are critical for organizing functional tissue networks, due to ECM secretion, defining the tissue architecture and allowing cells to migrate and communicate. Thus, they have been implicated in the formation of specialized niches which support various processes including stem cell proliferation, haematopoiesis, and even joint lubrication (<xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B37">37</xref>&#x2013;<xref ref-type="bibr" rid="B40">40</xref>). Their multifaced properties also allow them to establish the functioning and positioning of other cell types. Following tissue damage fibroblasts are responsible for tissue healing, inflammation, and scarring (<xref ref-type="bibr" rid="B40">40</xref>).</p>
<p>Among those specialized functions, fibroblasts play a dominant role in immune system establishment from addressing alert signals during inflammation and participating in the T and B cell maturation and trafficking (<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B41">41</xref>).</p>
<p>Immune cell recruitment to peripheral tissues requires specific cues from endothelial cells. This includes cell interactions through adhesion molecules, including selectins and integrins, and activation molecules called chemokines (<xref ref-type="bibr" rid="B42">42</xref>). Due to their immunological properties, fibroblasts play a critical role in supporting the recruitment and retention of leukocytes within the tissue (<xref ref-type="bibr" rid="B43">43</xref>, <xref ref-type="bibr" rid="B44">44</xref>), a process, that is essential for establishing an immune response (<xref ref-type="bibr" rid="B41">41</xref>). Stromal niches coordinate lymphocyte trafficking and survival in lymphatic tissues (<xref ref-type="bibr" rid="B45">45</xref>). In lymphoid tissue, fibroblastic reticular cells (FRCs) shape the stromal architecture of the secondary lymphoid organs (SLO) secreting chemokines, survival cues and the ECM network necessary for establishing the adaptative immunity (<xref ref-type="bibr" rid="B46">46</xref>). FRCs originate from the mesenchymal lymphoid tissue organizer cells (mLTo), expressing PDGFR&#x3b1;/&#x3b2;, which then differentiates into specialized FRC subsets in a &#x201c;2 signals&#x201d; model (<xref ref-type="bibr" rid="B47">47</xref>). The first signal, comprising lymphotoxin-&#x3b2; receptor (LT&#x3b2;R) and nuclear factor nuclear factor-kappa B (NF-&#x3ba; B), commits to the FRC lineage differentiation, whereas the second signal provides FRC-specialized identities. Those FRC-specialized subsets form distinct niches of the SLO and are characterized by their localization and immune interactors. For instance, in the lymph node, FRC landscape comprise marginal reticular cells (MRC), follicular dendritic cells (FDCs) in the dark zone and in the light zone, T&#x2010;B border reticular cells (TBRC), interfollicular reticular cells (IRC), medullary reticular cells (MedRC), T cell reticular cells (TRC), and perivascular reticular cells (PRC) around blood vessels (<xref ref-type="bibr" rid="B47">47</xref>). While the second signal is not yet fully understood, some molecules such as tumor necrosis factor (TNF) or receptor activator of nuclear factor kappa-B ligand (RANKL) are involved in the establishment of FDC or MRC respectively (<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B48">48</xref>). FRCs also support immune cell communication by establishing chemokine gradients (CXCL13, CXCL12, CXCL21, CXCL19) and survival cues including IL-7, or RANKL (<xref ref-type="bibr" rid="B46">46</xref>). Thus, the stromal compartment comprising fibroblasts, is essential for many immune processes by elaborating a precise set of cytokines and chemokines to drive immune cell communication.</p>
</sec>
</sec>
<sec id="s3">
<label>3.0</label>
<title>Fibroblast dysregulation in disease</title>
<sec id="s3_1">
<label>3.1</label>
<title>Role in the immune response: The loss of homeostatic balance leading to inflammation</title>
<p>As already mentioned, fibroblasts support the recruitment and activation of immune cells, by secreting and responding to cytokines, chemokines, and other inflammatory stimuli. A multi-omics, cross-tissue study has demonstrated that fibroblasts, along with endothelial and epithelial cells, rapidly respond to immune activation based on epigenetic changes (<xref ref-type="bibr" rid="B49">49</xref>). Inflammation relies on an orchestrated series of events comprising the recruitment of immune cells, their activation, and a final resolution phase. It now appears that fibroblasts are critical in all these phases. Therefore, dysregulation of the immunomodulatory properties of fibroblasts can lead to persistent chronic inflammation and failed resolution. The resolution of the inflammation is vital for tissue homeostasis. Eliminating pro-inflammatory and survival signals initiates inflammation resolution, which is followed by an increase in apoptotic signalling and re-entry of the remaining inflammatory effectors in the circulatory and lymphatic system (<xref ref-type="bibr" rid="B50">50</xref>). This process can be perturbed by fibroblasts that remain primed to inflammatory signals leading to abnormal retention of lymphocytes within the peripheral tissue. This phenomenon is observed in rheumatoid arthritis (RA), where synovial fibroblasts (SFs) are primed by inflammatory signals, increasing their inflammatory potential. Indeed, upon tumor necrosis factor alpha (TNF-&#x3b1;) stimulation, SFs exhibit prolonged activation of NF-&#x3ba; B leading to excessive interleukin 6 (IL-6) levels (<xref ref-type="bibr" rid="B51">51</xref>). This effect is increased upon re-stimulation confirming the priming potential of SFs in inflammation (<xref ref-type="bibr" rid="B52">52</xref>). Furthermore, a recent study has demonstrated that intracellular activation of the complement C3 component in rodent SFs induces glycolysis and activates the inflammasome (<xref ref-type="bibr" rid="B53">53</xref>). Therefore, primed SFs produce pro-inflammatory RANKL, IL-6, TNF and IL-1&#x3b2;, mediating inflammatory bone destruction. Evidence has also demonstrated the role of stromal cells in activating CXCR4, a chemokine receptor supporting the infiltration of synovial T cells, subsequently increasing their retention in the tissue <italic>via</italic> the endothelial expression of SDF-1 (CXCR4 ligand) (<xref ref-type="bibr" rid="B54">54</xref>, <xref ref-type="bibr" rid="B55">55</xref>).</p>
<p>Other chemokines are also involved in CD4+ and CD8+ T cell accumulation and migration to the synovial microenvironment, including CCL5 or CXCL11 (<xref ref-type="bibr" rid="B56">56</xref>). Besides chemoattractant signals, apoptotic resistance is also increased in RA through T cell interaction with SFs <italic>via</italic> integrins (<xref ref-type="bibr" rid="B57">57</xref>). Excessive lymphocyte accumulation in RA is also mediated by the expression of pro-survival SF molecules, impairing accurate resolution. For instance, synovial fibroblasts secrete interleukin 7 (IL-7) and IL-15 inducing T cell proliferation (<xref ref-type="bibr" rid="B58">58</xref>). Altogether, this evidence suggests that synovial fibroblasts adopt FRC properties during chronic inflammation and permit the formation of ectopic-lymphoid structures, known as tertiary lymphoid structures (TLS) (<xref ref-type="bibr" rid="B17">17</xref>, <xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B59">59</xref>). By communicating with immune cells and shaping the microenvironment toward inflammation or resolution, fibroblasts appear as active contributors to inflammatory diseases, fibrosis, or cancer. Therefore, understanding the factors that drive fibroblast heterogeneity might help therapeutic targeting of inflammatory-mediated diseases.</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Heterogeneity in the progression of disease across tissues</title>
<sec id="s3_2_1">
<label>3.2.1</label>
<title>Rheumatoid arthritis</title>
<p>Fibroblasts cell states are dramatically altered in diseased tissues. For instance, fibroblasts in the joints of RA patients consist of discrete fibroblast populations which become pathogenic upon repetitive inflammatory signals. The synovium is a thin connective tissue at the interphase of the bones and is essential to maintain a low friction environment by secreting the synovial fluid into the synovial cavity. It comprises two distinct mesenchymal compartments: an epithelial-like lining layer formed by tissue resident macrophages and lubricin (PRG4) expressing lining layer fibroblasts and a sub-lining structure which contains fibroblasts the vascular system and the immune cells (<xref ref-type="bibr" rid="B39">39</xref>). During inflammation, the architecture of the sub-lining drastically changes, and the SL fibroblast population expands. Using data from the Accelerating Medicines Partnership Rheumatoid Arthritis/Systemic Lupus Erythematosus (AMP RA/SLE) Consortium, <italic>Zhang et&#xa0;al.</italic> identified 4 synovial fibroblast subsets: a perivascular and interstitial THY1+/HLA-DR<sup>hi</sup>, perivascular sub-lining CD34+ fibroblasts, a DKK3+/CADM1+ sub-lining population and CD55+PRG4+ lining layer fibroblasts (<xref ref-type="bibr" rid="B36">36</xref>). The CD55+ lining layer fibroblasts are the most transcriptionally distinct subset compared to the THY1+ sub-lining fibroblasts. Those results have been further confirming by <italic>Croft et&#xa0;al.</italic> and validated in the mouse synovium (<xref ref-type="bibr" rid="B60">60</xref>). <italic>Croft et&#xa0;al.</italic> also demonstrated functional heterogeneity of the fibroblast populations during arthritis. Indeed, intra-articular injection of FAP+THY+ fibroblasts resulted in severe and sustained inflammation, whereas injecting FAP+THY- increased osteoclast activity and bone damage <italic>via</italic> the activation of nuclear factor-&#x3ba;B ligand (RANKL) (<xref ref-type="bibr" rid="B60">60</xref>).</p>
<p>In RA THY1+ fibroblasts expand from the perivascular niche in the direction of the lining layer and endothelial cells provide positional cues for fibroblasts <italic>via</italic> NOTCH3 signalling (<xref ref-type="bibr" rid="B61">61</xref>). NOTCH3 activation in fibroblasts also modulates the pathogenic sub-lining phenotype and increases their expansion. Genetic depletion and antibody blockade of NOTCH3 decreases synovial inflammation and damage, suggesting the important role of endothelial-fibroblast crosstalk in RA. By contrast, the lining layer fibroblast identity is maintained in the absence of endothelial positional cues (<xref ref-type="bibr" rid="B62">62</xref>). However, a recent study have demonstrated a novel transcriptional regulation which direct the fate of SFs toward a ECM degrading phenotype. Indeed, <italic>Yan et&#xa0;al.</italic> identified the transcription factor ETS1 as a positive regulator of <italic>Tnfsf11</italic> (coding for RANKL), MMP13 and MMP3 in arthritic SFs (<xref ref-type="bibr" rid="B63">63</xref>). This discovery gives new lines of thought in fate decision process of pathological fibroblasts besides the identified environmental cues.</p>
</sec>
<sec id="s3_2_2">
<label>3.2.2</label>
<title>Ulcerative colitis</title>
<p>In the gut, most fibroblast subsets exist in both healthy individuals and in patients with ulcerative colitis (UC), with inflammatory fibroblast populations in UC expanding (<xref ref-type="bibr" rid="B21">21</xref>). These inflammatory associated fibroblasts are characterised by the expression of the colitis and fibrosis related gene, IL-11, and share markers with cancers-associated fibroblasts (CAFs), such as the fibroblast activated protein (FAP), or WNT2 (<xref ref-type="bibr" rid="B63">63</xref>), suggesting a putative shared state/origin between them. Furthermore, OSMR (Oncostatin M) is highly expressed in the inflammatory-associated fibroblasts, highlighting their role in anti-TNF therapy resistance (<xref ref-type="bibr" rid="B64">64</xref>).</p>
</sec>
<sec id="s3_2_3">
<label>3.2.3</label>
<title>Periodontitis</title>
<p>Periodontitis is an inflammatory disease affecting the gingiva due to a dysbiosis on the tooth surface. Transcriptional analysis on periodontitis tissue indicates a decrease of the stromal cells (endothelial/fibroblast) proportion, albeit presenting transcriptional similarities compared to healthy tissue (<xref ref-type="bibr" rid="B22">22</xref>). Nevertheless, a transcriptional shift toward inflammation is observed in the epithelial and stromal population including the fibroblasts clusters previously described in health. Indeed, genes associated with antimicrobial response are enriched in the fibroblast populations. Moreover, the increased expression of CXCL1, CXCL2 and CXCL3 by the fibroblasts reflect an active recruitment of neutrophil. A parallel study also demonstrated the increased of inflammatory fibroblasts proportions in mild and severe periodontitis gingiva (<xref ref-type="bibr" rid="B65">65</xref>). In addition, the authors report a disruption of fibroblast population known to be involved in tissue repair. Notably characterized by a diminution of collagen VI in severe periodontitis tissue (<xref ref-type="bibr" rid="B65">65</xref>)</p>
</sec>
<sec id="s3_2_4">
<label>3.2.4</label>
<title>Pulmonary fibrosis</title>
<p>
<italic>Habermann et&#xa0;al.</italic> have identified different fibroblast states in the lungs of pulmonary fibrosis patients compared to non-fibrotic donors, including ACTA2+ myofibroblasts, PLIN2+ lipofibroblast-like, HAS1 high populations (<xref ref-type="bibr" rid="B35">35</xref>). Overall, fibroblast populations are expanded in fibrotic lung tissue compared to controls and are located in specific niches. Indeed, the aSMA encoding <italic>Acta2</italic>-expressing myofibroblasts are expanded in the sub-epithelial regions of the large airways, while PLIN2+ populations are diffusely distributed in the interstitial regions around the alveoli and HAS1+ populations in the sub pleural regions. Dysregulated gene expression in these fibroblast niches promote pathologic ECM expansion.</p>
<p>The presence of various fibroblast populations in disease supports the concept that fibroblasts are key players in many pathologies by sustaining inflammation or increasing fibrosis. Recognising that fibroblast heterogeneity depends on their environmental cues, it is critical to determine if the activation of pathogenic fibroblast subsets is tissue-dependent or shared across diseases.</p>
</sec>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Cross tissue pathological implications</title>
<p>Novel statistical models for integrative clustering of scRNA- seq datasets allow an assessment of the cellular state across species, tissues, and diseases. In line with the evidence of a universal dpt+ fibroblasts in the mouse (<xref ref-type="bibr" rid="B12">12</xref>), <italic>Korsunsky et&#xa0;al.</italic> elucidated the presence of shared fibroblasts activation states across human diseases and tissues (<xref ref-type="bibr" rid="B66">66</xref>). The authors compared the transcriptomic profiles of fibroblasts from multiple organs using individual adult scRNA-seq datasets including the Adult Human Cell Atlas (AHCA) (<xref ref-type="bibr" rid="B67">67</xref>) and Tabula Sapiens (TS) (<xref ref-type="bibr" rid="B68">68</xref>). They found over 256 genes from AHCA and 357 from TS as universal fibroblast markers across tissues, generating <italic>de novo</italic> scRNA-seq data to characterize inflammatory fibroblasts from the gut, the lungs, the synovium, and the salivary glands. It is important to note that this study is pioneering in its use of scRNA-seq on salivary glands from patients with Sj&#xf6;gren&#x2019;s syndrome and confirms the presence of PDPN+CD34+ and CD34-CCL19+ populations as identified through multi-channel flow cytometry (<xref ref-type="bibr" rid="B23">23</xref>). Between those 4 organs the authors identified 5 clusters, with shared markers, including SPARC+COL3A1+, FBLN1+, PTGS2+SEMA4A+, CD34+MFAP5+, and CXCL10+CCL19+. Among those clusters SPARC+COL3A1+ and CXCL10+CCL19+ were significantly expand in all the inflamed but not normal tissues (<xref ref-type="bibr" rid="B44">44</xref>) (<xref ref-type="bibr" rid="B66">66</xref>). Gene ontology (GO) and transcription factor analysis of the SPARC+COL3A1+ indicated enriched expression of the ECM and Notch signalling pathways, whereas CXCL10+CCL19+ was enriched in genes regulating lymphocytes chemotaxis, T cell proliferation, NF-&#x3ba; B and interferon (IFN) signature. The interaction between SPARC+COL3A1+ and endothelial cell <italic>via</italic> NOTCH has been demonstrated <italic>in vitro</italic>, consolidating the role of endothelial/fibroblasts crosstalk in priming synovial tissue to increase lymphocyte infiltration. This SPARC+COL3A1+ population closely corresponds with NOTCH-activated THY1+ SFs during RA (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B69">69</xref>). SPARC+COL3A1+ fibroblasts might expand before CXCL10+CCL19+, suggesting a later differentiation in favour of lymphocyte interaction after endothelial activation. Additionally, HLA-DR<sup>hi</sup> synovial fibroblasts might be related to the CXCL10+CCL19+ due to their strong IFN response. Recent evidence supports the concept that SFs-induced CXCL10 expression is achieved following stimulation by TNF-&#x3b1; and IFN, which subsequently activated T cell <italic>via</italic> CXCR3 (<xref ref-type="bibr" rid="B70">70</xref>). Overlapping activation states of fibroblasts is found across tissues and diseases but may not be exclusive to inflammation. Indeed, a recent study identified the crosstalk between epithelial cells and fibroblasts through SPARC promoting a chronic wound healing phenotype in idiopathic pulmonary fibrosis (<xref ref-type="bibr" rid="B71">71</xref>). This highlights that the state of fibroblast activation is potentially responsible for driving disease by communicating with different cell types through similar signals. In summary, integrative clustering studies on stromal cells has revealed new approaches to understand common cellular activation mechanisms leading to potential cross-disease therapies (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Fibroblasts shared an inflammatory phenotype across diseases and tissues. SPARC + COL3A + fibroblasts expend in the perivascular niche during inflammation after crosstalk with endothelial cells via NOTCH signaling pathway. This leads to their accumulation and the expression of chemokine&#x2019;s promoting T and B cell infiltration in the tissue. Later, the CXCL10+CCL19 + fibroblasts population emerged and promote the retention and survival of T cell with in the tissue by the expression if IFNy, IL-7, TNF, and various chemokine&#x2019;s. This establishment is temporal as evidence in mouse colitis models shows the transitory apparition of SPARC+COL3A+ followed by CXCL10+CCL19 + population. This mechanism was characterized in RA. However, SPARC + COL3A _ CXCL10+CCL19 + and CXCL10 +CCL19 _ fibroblasts are expended during RA (Rheumatoid Arthritis), SS (Sjogren&#x2019;s syndrome), IPF(idiopathic pulmonary Fibrosis) and UC (Ulcerative Colitis).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1137659-g002.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<label>4.0</label>
<title>Fibroblasts and ageing</title>
<sec id="s4_1">
<label>4.1</label>
<title>Cellular senescence of fibroblasts</title>
<p>Cellular senescence, irreversible cell growth arrest, was initially documented in 1961 by Hayflick and Moorhead with their experiments on primary human fibroblasts, which demonstrated a finite proliferation lifespan in vitro and a gradual exhaustion of their replicative potential (<xref ref-type="bibr" rid="B72">72</xref>). The subsequent identification of senescent cells in evolutionarily conserved embryological organs through major animal lineages revealed their phenotypic ancestry and gave rise to several theories regarding their contribution to ageing (<xref ref-type="bibr" rid="B73">73</xref>&#x2013;<xref ref-type="bibr" rid="B78">78</xref>). Since then, senescence has been shown to be a complex phenomenon with beneficial functions in embryonic development (<xref ref-type="bibr" rid="B73">73</xref>, <xref ref-type="bibr" rid="B75">75</xref>, <xref ref-type="bibr" rid="B79">79</xref>), wound healing (<xref ref-type="bibr" rid="B80">80</xref>&#x2013;<xref ref-type="bibr" rid="B82">82</xref>), tissue repair (<xref ref-type="bibr" rid="B83">83</xref>) and cancer prevention (<xref ref-type="bibr" rid="B84">84</xref>, <xref ref-type="bibr" rid="B85">85</xref>), but also critical deleterious roles in organismal ageing (<xref ref-type="bibr" rid="B86">86</xref>, <xref ref-type="bibr" rid="B87">87</xref>), age-related diseases (<xref ref-type="bibr" rid="B87">87</xref>), abnormal immune responses, inflammation, and even tumorigenesis primarily detected later in life (<xref ref-type="bibr" rid="B88">88</xref>, <xref ref-type="bibr" rid="B89">89</xref>). It has been proposed that ageing is caused by the depletion of stem and progenitor cells alongside the effects of senescent cells&#x2019; inflammatory phenotype (<xref ref-type="bibr" rid="B84">84</xref>, <xref ref-type="bibr" rid="B90">90</xref>). Comprehensive research has been conducted to reveal the molecular triggers, mechanisms, and functionality underpinning senescent cells in tissues and how these contribute towards ageing and age-related diseases.</p>
<p>Cellular senescence refers to the genetically programmed and stable proliferation arrest state that cells undergo in response to detrimental stimuli (<xref ref-type="bibr" rid="B89">89</xref>, <xref ref-type="bibr" rid="B91">91</xref>, <xref ref-type="bibr" rid="B92">92</xref>). These stimuli, arising from intrinsic and extrinsic stresses, limit the propagation of damaged and stressed cells, causing them to enter a permanent cell cycle pause state (<xref ref-type="bibr" rid="B93">93</xref>). In quiescent skin fibroblasts, permanent senescence is induced by cell-autonomous (cell cycle exit), non-cell autonomous (ability to modulate surrounding tissues) as well as exogenous (e.g. tobacco smoking, UV irradiation) stressors, leading to various responses (<xref ref-type="bibr" rid="B94">94</xref>&#x2013;<xref ref-type="bibr" rid="B96">96</xref>). Telomere attrition, or so-called telomere shortening, one of the first molecular senescence triggers reported, is caused by the progressive shortening at the chromosomal ends with repeated cell divisions (<xref ref-type="bibr" rid="B97">97</xref>, <xref ref-type="bibr" rid="B98">98</xref>). This is characteristic of fibroblast senescence and is referred to as replicative senescence (RS), induced by replicative exhaustion (<xref ref-type="bibr" rid="B72">72</xref>, <xref ref-type="bibr" rid="B93">93</xref>). Additionally, senescence in dermal fibroblasts is marked by mitochondrial dysfunction, also known as mitophagy (<xref ref-type="bibr" rid="B99">99</xref>&#x2013;<xref ref-type="bibr" rid="B102">102</xref>); DNA damage and subsequent activation of the DNA damage response (DDR) signaling pathway (<xref ref-type="bibr" rid="B103">103</xref>, <xref ref-type="bibr" rid="B104">104</xref>); loss of proteostasis caused by the dysregulated homeostasis of the cellular proteome driven by aberrant protein synthesis, folding and degradation (<xref ref-type="bibr" rid="B105">105</xref>&#x2013;<xref ref-type="bibr" rid="B107">107</xref>); excessive oxidative DNA damage and oxidative stress (<xref ref-type="bibr" rid="B102">102</xref>); chromosomal and epigenetic aberrations, including post-translational modifications like cross-linking and oxidation (<xref ref-type="bibr" rid="B107">107</xref>); metabolic reprogramming and impairment in the DNA repair mechanisms (<xref ref-type="bibr" rid="B107">107</xref>, <xref ref-type="bibr" rid="B108">108</xref>).</p>
<p>These triggers provoke the upregulation or downregulation of corresponding proteins, driving fibroblast senescence, which enhance tissue ageing. Mitochondrial dysfunction, for example, associated with the formation of reactive oxygen species (ROS) in ageing fibroblasts, amplifies the expression of activation-protein 1 (AP-1) and NF-&#x3ba;B dependent signaling pathways leading to excessive DNA damage in the skin and elevated accumulation of superoxide ions, which have been indicated as inducers of fibroblast senescence and accelerated skin ageing (<xref ref-type="bibr" rid="B109">109</xref>&#x2013;<xref ref-type="bibr" rid="B111">111</xref>).</p>
<p>It is also well-established that elevated cyclin-dependent kinase (CDK) levels are another common feature of cellular senescence in dermal fibroblasts (<xref ref-type="bibr" rid="B107">107</xref>). Among those, p16<sup>Ink4a/Arf</sup> (CDKN2A) and p21 (CDKN1A), two of best well-known senescence markers, alongside the tumor suppressor protein p53 and the senescence-associated &#x3b2;-galactosidase (SA-&#x3b2;-gal), associated with lysosomal activity, present a significantly increased expression during fibroblast senescence, playing a causal role in skin ageing and age-related diseases (<xref ref-type="bibr" rid="B85">85</xref>, <xref ref-type="bibr" rid="B87">87</xref>, <xref ref-type="bibr" rid="B112">112</xref>&#x2013;<xref ref-type="bibr" rid="B114">114</xref>). Importantly, clearance of p16<sup>Ink4a/Arf</sup> positive senescent cells using senolytic treatment in both BuRB1 progeroid ATTAC transgenic mouse models reverses the effects of senescence in tissues and prevents the accumulation of age-related diseases (<xref ref-type="bibr" rid="B87">87</xref>, <xref ref-type="bibr" rid="B112">112</xref>). Besides that, fibroblast senescent cells also exhibit enhanced phosphorylated &#x3b3;-H2AX, a DNA Damage Response (DDR) marker, the inactivation of which causes senescent cells to resume DNA replication (<xref ref-type="bibr" rid="B113">113</xref>, <xref ref-type="bibr" rid="B115">115</xref>, <xref ref-type="bibr" rid="B116">116</xref>).</p>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Tissue ageing: The role of fibroblasts</title>
<p>The ability of the human body to resolve inflammation decreases with advancing age, causing an imbalance between pro-inflammatory and anti-inflammatory cellular profiles (<xref ref-type="bibr" rid="B117">117</xref>). This gives rise to &#x201c;inflammaging&#x201d; - the chronic low-grade pro-inflammatory state that accelerates with older age and is predominantly observed in age-related diseases, such as osteoarthritis, cardiac disease and even several tumorigenesis types as well as other non-age related disease like diabetes (<xref ref-type="bibr" rid="B117">117</xref>, <xref ref-type="bibr" rid="B118">118</xref>).</p>
<p>Tissue ageing is characterized by the systemic increase in multiple pro-inflammatory cytokines caused by the accumulation of senescent cells (<xref ref-type="bibr" rid="B117">117</xref>). Although these are stable in cellular division and growth, they remain viable and metabolically active, implementing a complex response known as the senescence-associated secretory phenotype (SASP) (<xref ref-type="bibr" rid="B119">119</xref>, <xref ref-type="bibr" rid="B120">120</xref>), characterized by the secretion of a range of pro-inflammatory molecules including chemokines (macrophage inflammatory proteins (MIPs), monocyte chemoattractant proteins (MCPs)), interleukins (IL-1, IL-6, IL-8, IL-18), receptor ligands, matrix metalloproteases (MMPs), ECM components, growth factors (transforming growth factor &#x3b2; (TGF-&#x3b2;)), proteases, and cytokines, that can induce inflammation, alter the microenvironment and modulate neighboring cells (<xref ref-type="bibr" rid="B121">121</xref>&#x2013;<xref ref-type="bibr" rid="B123">123</xref>).</p>
<p>Previous studies have documented that SASP is the primary mechanism by which senescent cells detrimentally impact on the skin and other tissues (<xref ref-type="bibr" rid="B124">124</xref>). SASP is required for the clearance of senescent cells, which they accomplish by recruiting and secreting immune factors that initiate phagocytosis (<xref ref-type="bibr" rid="B91">91</xref>). Therefore, it plays a critical role in directing cells of the innate and adaptive immune system towards fibroblast senescent cells, promoting their clearance, and terminating inflammation (<xref ref-type="bibr" rid="B124">124</xref>). However, aged tissues accumulate excessive senescent cell numbers contributing to age-related tissue deterioration (<xref ref-type="bibr" rid="B125">125</xref>). This feature, along with impaired immune activities, stem and progenitor cells exhaustion observed with advanced age, results in the accumulation of persistent senescent cells that aggravate damage and contribute to tissue ageing (<xref ref-type="bibr" rid="B91">91</xref>). For instance, inefficient clearance leads to loss of homeostasis and imbalance between senescence and clearance, resulting in deficiencies and age-related diseases (<xref ref-type="bibr" rid="B90">90</xref>, <xref ref-type="bibr" rid="B126">126</xref>, <xref ref-type="bibr" rid="B127">127</xref>). Previous research has shown that Nrf2, a redox regulator used to induce senescence <italic>in vitro</italic> and <italic>in vivo</italic>, creates an aberrant ECM when overexpressed in fibroblasts (<xref ref-type="bibr" rid="B128">128</xref>). This aberrant ECM, rather than promoting wound healing, acts in a pro-tumorigenic manner, suggesting that the beneficial effects of senescent cells are context-dependent (<xref ref-type="bibr" rid="B94">94</xref>). Therefore, if not cleared from the tissue, senescent cells can dominate and cause detrimental effects (<xref ref-type="bibr" rid="B94">94</xref>).</p>
<p>Senescent fibroblasts with an abnormal SASP can also disrupt the interactions between the dermis and the epidermis (<xref ref-type="bibr" rid="B129">129</xref>). Fibroblasts derived from the dermis release an insulin-like growth factor (IGF-1) which is essential for the mesenchymal stem cell niches (MSC) and regulates the balance of epidermal cell proliferation and differentiation (<xref ref-type="bibr" rid="B129">129</xref>). During fibroblast senescence, IGF-1 signaling is downregulated because of enhanced superoxide ion production accumulating from the dysfunctional mitochondria of the aged human and murine dermal fibroblasts (<xref ref-type="bibr" rid="B130">130</xref>). Later evidence indicates that deprived IGF-1 and inhibition of the relaying IGF-1 signal causes suppression of collagen synthesis in the dermis and subsequent epidermal atrophy due to enhanced DNA damage induction, &#x3b3;H2AX and p16<sup>Ink4a/Arf</sup> production in the epidermal cells, consolidating the data underlying the vitality of IGF-1 in the human skin (<xref ref-type="bibr" rid="B129">129</xref>, <xref ref-type="bibr" rid="B131">131</xref>, <xref ref-type="bibr" rid="B132">132</xref>).</p>
<p>It is also vital to note that, the pathophysiology and inflammaging of the skin is a multifactorial rather than a single event, created by the complex network of cellular cross-link communication among fibroblasts, keratinocytes and melanocytes, as well as their interactions with the external environmental stressors (<xref ref-type="bibr" rid="B117">117</xref>).</p>
<p>Interestingly, besides the production of pro-inflammatory cytokines and interleukins derived by SASP, recent evidence highlights the role of inflammation in fibroblast senescent cells&#x2019; generation from an alternative, intriguing ankle. For instance, data from metabolically downregulated C3-/- mice, injected with monosodium urate signals (MSU), present fibroblast senescence, which is elevated in aged-cultured cells, marked by enhanced expression of senescence-associated &#x3b2;-galactosidase, as well as p15, p16 and p21 senescent markers (<xref ref-type="bibr" rid="B53">53</xref>). Therefore, when the complement 3 component of the innate immune system is abolished, fibroblasts cannot be primed and become senescent (<xref ref-type="bibr" rid="B53">53</xref>). Similar effects are also observed when mTOR and HIF&#x3b1; are pharmacologically inhibited using rapamycin and the translational inhibitor KC7F2, respectively (<xref ref-type="bibr" rid="B53">53</xref>). The authors, therefore, propose that senescence induction <italic>via</italic> pharmaceutical inhibition of mTOR or HIF&#x3b1;, or C3 depletion, create an immune-regulatory phenotype, prohibiting uncontrolled complement activation, ameliorating the detrimental inflammatory effects recurring at specific previously affected sites (<xref ref-type="bibr" rid="B53">53</xref>). However, it would also be beneficial to determine whether this C3 abolishment creates any adverse effects in the long term or measure the exact levels of senescence that create this anti-inflammatory effect.</p>
<p>Senescence is also induced <italic>via</italic> activation of the melanocortin type 1 receptor (MC1), which alternates the genetic expression, increasing MMP expression, deteriorating collagen production and altering the remodeling phase of wound healing. Nevertheless, recent evidence shows that selective agonism of MC1 through activation of G-protein coupled receptor (GPCR) and dependence on the ERK1/2 downstream phosphorylation ameliorates inflammation in the joints and protects the cartilage <italic>via</italic> inducing senescence in the synovial tissue (<xref ref-type="bibr" rid="B133">133</xref>). Therefore, selective MRC1 expression inducing senescence is proposed as a promising therapeutic target against inflammatory arthritis (<xref ref-type="bibr" rid="B133">133</xref>).</p>
<p>This evidence thus indicates the vitality of harmonized senescence fibroblasts, strengthening the hypothesis that the absolute depletion of senescent cells can also be detrimental to the tissues.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Fibroblast heterogeneity during ageing</title>
<p>Biological ageing can be considered as a disease on its own (<xref ref-type="bibr" rid="B134">134</xref>). Ageing leads to the accumulation of degenerative biological processes involving a progressive decline in organismal homeostasis (<xref ref-type="bibr" rid="B135">135</xref>). By driving modifications in the tissue, including increased inflammation, loss of tissue regeneration, fibrosis, and metabolic imbalance, ageing is a major comorbid factor in many diseases. While cellular senescence participates in many processes, other ageing factors that drive age-related disease are not yet fully understood. To address this issue, several scRNA-seq analysis have tried to elucidate the transcriptional heterogeneity of stromal cells in ageing. A study on mouse dermis revealed that old fibroblasts exhibit transcriptional noise and partially lose their identity while adopting adipocyte characteristics (<xref ref-type="bibr" rid="B136">136</xref>). A GO analysis comparing young and aged dermal fibroblasts indicated an upregulation of genes related with the immune response, a characteristic of the ageing cells (<xref ref-type="bibr" rid="B24">24</xref>). These mechanisms are not skin exclusive, as old murine cardiac fibroblasts also upregulate pathways associated with inflammation or ECM regulation. Interestingly, old cardiac fibroblasts seem to upregulate genes related to osteogenesis, indicating their potential involvement in epicardial layer calcification observed in elderly individuals (<xref ref-type="bibr" rid="B137">137</xref>). These data suggest that ageing fibroblasts may lose their specialized identity leading to abnormal functions. However, fibroblasts may not converge toward a common ageing phenotype, suggesting that tissue specificity remains. Future single-cell transcriptomic studies on other tissues and diseases will help to elucidate a potentially shared aging phenotype.</p>
</sec>
</sec>
<sec id="s5">
<label>5.0</label>
<title>Therapeutic perspectives of targeting fibroblasts in inflammation and ageing</title>
<p>Many efforts have been made to control the pathological phenotype of fibroblasts in different tissues in order to develop new approaches for the treatment of several diseases. In this section, we discuss the strategies that have been employed to develop a fibroblast targeted therapy.</p>
<p>Targeting cytokines, that are involved in the impaired functions of fibroblast, is considered of value for managing arthritis and other fibroblast-related conditions. Current therapeutic strategies that block fibroblast-activating signals such as anti- TNF therapy and anti- IL-6 receptor blocking antibodies, have shown clinical relevance for the treatment of chronic inflammatory conditions (<xref ref-type="bibr" rid="B138">138</xref>). Moreover, a range of strategies (such as monoclonal neutralising antibodies and small-molecule inhibitors) to treat cancer and fibrosis have been developed against TGF-&#x3b2;1; highly expressed and produced by fibroblasts (<xref ref-type="bibr" rid="B139">139</xref>, <xref ref-type="bibr" rid="B140">140</xref>). However, targeting a single stimulus is not considered an efficient approach in blocking fibroblast activation with the presence of other stimulating factors. Moreover, this approach can prevent the activation of other cell types and induce side effects under certain conditions (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B139">139</xref>). For this reason, intracellular proteins and signalling pathways, such as MAP and JAK (Janus kinase), have also attracted attention as targets to control fibroblast activation in RA regardless of stimulator type (<xref ref-type="bibr" rid="B141">141</xref>). The inhibition of transcriptional activators YAP/TAZ in fibroblasts is also considered as a promising strategy to explore for RA therapy. Indeed, the suppression of YAP/TAZ in SFs led to a reduction in their resistance to apoptosis, their inflammatory phenotype, proliferation, and ability to invade (<xref ref-type="bibr" rid="B142">142</xref>, <xref ref-type="bibr" rid="B143">143</xref>). Further research highlights the use of YAP/TAZ inhibitors as a treatment for Crohn&#x2019;s disease and for controlling intestinal fibrosis (<xref ref-type="bibr" rid="B144">144</xref>). In addition, recent findings have demonstrated the advantages of suppressing YAP/TAZ in fibroblasts by activating the dopamine receptor D1 (DRD1) in mouse models of lung and liver fibrosis (<xref ref-type="bibr" rid="B145">145</xref>).</p>
<p>These inhibitory approaches are now making progress with several preclinical studies aiming to design small inhibitor molecules with a high degree of selectivity. However, the risk of nonspecific and off-target effects requires deep consideration when developing these molecules. Targeting cytokine signal transduction may not be sufficient, especially in chronic conditions where multiple factors can promote the abnormal behaviour of fibroblasts (<xref ref-type="bibr" rid="B146">146</xref>). In this context, epigenetic dysregulation such as histone modification and miRNA expression are also implicated in the pathogenic phenotype of RA FLS (<xref ref-type="bibr" rid="B147">147</xref>, <xref ref-type="bibr" rid="B148">148</xref>). Thus, manipulating the epigenetic mechanisms of fibroblasts could be beneficial to develop new drugs for RA and other pathologies. In fact, induction of protective miRNAs expression and inhibition of HDACs (histone deacetylase) as well as BET proteins have shown promising results in RA SFs and animal models of arthritis (<xref ref-type="bibr" rid="B149">149</xref>, <xref ref-type="bibr" rid="B150">150</xref>). Beside epigenetic changes, miRNAs can target specific pathways involved in disease progression. For instance, miR-17 supress the IL-6 family autocrine loop by targeting JAK1/STAT3 pathway leading to anti-inflammatory and anti-erosion responses (<xref ref-type="bibr" rid="B151">151</xref>). Furthermore, inducing MiR-613 reduce the expression of the targeted transcript encoding for DKK1 in RA SFs which altered their proliferation, apoptotic resistance, and aggressiveness (<xref ref-type="bibr" rid="B152">152</xref>). On the other hand, targeting dysregulated miRNAs in CAFs might be promising for the development of novel anti- cancer drugs (<xref ref-type="bibr" rid="B153">153</xref>, <xref ref-type="bibr" rid="B154">154</xref>). Several studies have also established the beneficial effect of inhibiting DNA methylation and HDACs in the suppression of the pro-fibrotic phenotype by inhibiting the myo-fibroblasts trans differentiation of hepatic stem cells (HSCs) (<xref ref-type="bibr" rid="B155">155</xref>), or by directly targeted HSC derived myofibroblasts and their apoptotic resistance (<xref ref-type="bibr" rid="B156">156</xref>, <xref ref-type="bibr" rid="B157">157</xref>).</p>
<p>In addition to the epigenetic machinery, strategies that target the imbalanced metabolic pathways in both RA SFs and CAFs have been employed to reduce RA severity and inhibit tumour growth respectively (<xref ref-type="bibr" rid="B158">158</xref>, <xref ref-type="bibr" rid="B159">159</xref>)). Interestingly, a recent study proposes a new strategy to control fibrosis and hypertrophic scars formation using an anti-glycolytic agent that regulates fibroblasts activity (<xref ref-type="bibr" rid="B160">160</xref>). Glycolysis inhibition has also been shown to reduce cardiac fibroblasts activation <italic>in-vitro</italic> and to control cardiac fibrosis in mice with myocardial infarction (<xref ref-type="bibr" rid="B69">69</xref>). Targeted inhibition of glycolysis in fibroblasts is therefore considered as a promising approach for the treatment of several fibroblasts -related diseases.</p>
<p>Cellular senescence is another feature of RA fibroblasts that contribute to the chronicity of arthritis by triggering a pro-inflammatory phenotype (<xref ref-type="bibr" rid="B161">161</xref>). However, a recent study introduced fibroblast senescence induction as a new way to control joint inflammation through the selective activation of G-protein coupled receptor, MC1R, that inhibits FLS proliferation and promotes the acquisition of a pro-reparative phenotype with anti-arthritic effects in K/BxN arthritis model (<xref ref-type="bibr" rid="B133">133</xref>). Furthermore, senescence inhibition has been shown to have anti-fibrotic effects on IPF fibroblasts. Additionally, some anti-fibrosis and anti-cancer drugs are known to alleviate the senescence of lung fibroblasts (<xref ref-type="bibr" rid="B162">162</xref>).</p>
<p>The development of single-cell RNA-sequencing technologies highlighted the presence of distinct subsets of fibroblasts associated with different pathological conditions. Therefore, specific elimination of aberrant fibroblasts based on a specific cell marker may inform new opportunities to investigate novel drug targets in multiple diseases such as fibrosis, cancer, and chronic inflammatory diseases (<xref ref-type="bibr" rid="B3">3</xref>) (<xref ref-type="bibr" rid="B163">163</xref>). As described earlier, CXCL10+CCL19+ immune-interacting and SPARC+COL3A1+ vascular-interacting fibroblasts were identified as two fibroblast subtypes shared between inflamed tissues of four inflammatory diseases involving lung, intestine, salivary gland, and synovium. These inflammatory clusters are therefore suggested as novel therapeutic targets which may provide new approaches to develop common therapies for multiple chronic inflammatory diseases (<xref ref-type="bibr" rid="B66">66</xref>).</p>
<p>Deletion of systemic and local FAP&#x3b1;+ fibroblasts lead to protection associated with reduced leukocyte infiltration, inflammatory mediators, and joint damage in mouse models of arthritis (<xref ref-type="bibr" rid="B60">60</xref>). FAP expression on myofibroblasts of mice with IPF permits to selectively target fibroblasts which are promoting tissue fibrosis. Indeed, treatment with FAP-targeted PI3K inhibitor decreased collagen production and deposition and increased mouse survival (<xref ref-type="bibr" rid="B164">164</xref>). In this same context, COL1+ fibroblasts have been recently identified as a good tool to test the effect of inhibiting genetically STAT 3 in mouse model of colitis-associated colorectal cancer, where it led to a decreased proliferation of tumor cells (<xref ref-type="bibr" rid="B165">165</xref>).</p>
<p>Similarly, targeting NOTCH3 receptor expressed on fibroblasts genetically or therapeutically promotes anti-arthritic effects in mice by significantly reducing joint swelling and bone erosion (<xref ref-type="bibr" rid="B61">61</xref>).</p>
<p>Cadherin 11 also represents a potential candidate to control the altered behaviour of fibroblasts in several pathologies such as arthritis and fibrosis. Different strategies such as antibody-mediated blockade and genetic deletion of this surface marker have been tested and shown their effectiveness (<xref ref-type="bibr" rid="B166">166</xref>, <xref ref-type="bibr" rid="B167">167</xref>).</p>
<p>All together, these findings suggest that targeting fibroblast specific molecules could be a therapeutic avenue for RA and other chronic diseases that involve fibroblasts. However, specific depletion of pathogenic subset of fibroblasts based on their surface markers without side effects on tissue homeostasis and other organs is challenging (<xref ref-type="bibr" rid="B141">141</xref>, <xref ref-type="bibr" rid="B168">168</xref>).</p>
</sec>
<sec id="s6" sec-type="conclusions">
<title>Conclusions and perspectives</title>
<p>From their embryonic origins in primary mesenchymal tissue to their specialized sub population observed in specific niches, fibroblasts have colonized and shaped the entire organism by connecting organs and cells together. Their contribution to ECM secretion is essential to maintain tissue function and create precise networks for cell communication. However, fibroblasts are not just structural cells. Single cell RNA sequencing reveals the transcriptomic heterogeneity of fibroblasts underpinning essential regulation in health, aging and diseases (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The characterization of fibroblasts subsets and their positional identities in many organs highlight their role in supporting very specific functions within the tissue. However, those processes are perturbed during diseases such as rheumatoid arthritis, pulmonary fibrosis, or ulcerative colitis where specific fibroblast subsets can lead to disease progression. The identification of overlapping sub populations across inflammatory diseases reveals shared mechanism influencing fibroblasts&#x2019; behaviours and leading to aberrant inflammatory responses. Communication between endothelial and fibroblasts presents a critical role in the establishment of pathogenic fibroblasts subset which then participate to the recruitment and retention of immune cells, impairing resolution of inflammation. The discovery of common activation mechanisms driving phenotypic changes in fibroblasts across diseases and organs might suggest a plasticity of this cell type. Despite the proven existence of a universal &#x201c;reservoir&#x201d; fibroblast population (<xref ref-type="bibr" rid="B12">12</xref>), its biological relevance might be difficult to study due to plasticity. However, the potential or limitation of this plasticity needs to be further described particularly when developing induced pluripotent stem cells from fibroblasts (<xref ref-type="bibr" rid="B169">169</xref>, <xref ref-type="bibr" rid="B170">170</xref>). Interestingly, recent studies on ageing fibroblasts report that they adopt other cell type traits such as adipocytes in the dermis, or osteoblasts in cardiac tissue. In contrast, fibroblast-driven inflammation is common during disease or ageing. While pathogenic sub populations emerge after repeated inflammatory stimuli, the ageing processes also induce changing in the aged fibroblasts leading towards inflammation. However, those changes do not increase heterogeneity in distinct populations but rather in stochastic transcriptional noise. One can therefore suggest that tissue ageing acts as a potent environmental cue driving fibroblasts to an increasingly common inflammatory phenotype and loss of their tissue distinct expression patterns. To address this, the transcriptomic profiles and functional characteristics of fibroblasts need to be further investigated across a range of tissues in both health and disease. Finally, the identification of transcription factors regulating the fate of fibroblasts toward a destructive or pro fibrotic phenotype remains unclear. The recent evidence of ETS1 as a transcription factor inducing ECM degradation programme in SFs leads to a better understanding the opposing role of fibroblasts in destructive/inflammatory diseases compared to pro fibrotic pathologies (<xref ref-type="bibr" rid="B171">171</xref>). Interestingly, the transcription factor PU.1 has been identified as a regulator of pro fibrotic phenotype in fibroblasts (<xref ref-type="bibr" rid="B172">172</xref>). Moreover, ETS1 and PU.1 are mutually exclusive, and their expression does not overlap in fibroblasts in both IPF and arthritic synovium (<xref ref-type="bibr" rid="B171">171</xref>). This highlights an important fate decision mechanism in fibroblasts by driving a pro destructive or pro fibrotic phenotype. Nonetheless, the mechanisms that control those fate decision pathway remains unexplored.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Summarized function of fibroblasts during inflammation, fibrosis and Aging. During inflammation fibroblasts adopt activate phenotypes. This often leads to the priming of fibroblasts which remains potent to inflammatory stimuli. This is characterized by the secretion of pro-inflammatory cytokines and chemokines. Those properties can lead to local accumulation of lymphocytes where fibroblast support their survival by tertiary lymphoid structure (TLS). In fibrosis, my fibroblasts are accumulating and secreting abnormal ECM modules leading to matrix stiffness enabling proper network communication. During aging, fibroblasts highly participate to low grade inflammation call inflammaging through the release of SASP containing pro inflammatory cytokines. Evidence shows that fibroblasts transcriptome changes toward a less define transcriptomic identity called transcriptional noise. While other old fibroblasts, adopt other cell type characteristics such as osteoclasts in cardiac fibroblast or adipocyte in the skin.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1137659-g003.tif"/>
</fig>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>VG and MK contributed equally. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was Versus Arthritis grants 22617 to GA, Medical Research Council Versus Arthritis Centre for Musculoskeletal Ageing Research (CMAR) to VG.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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