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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2023.1125984</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Airway allergy causes alveolar macrophage death, profound alveolar disorganization and surfactant dysfunction</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Feo-Lucas</surname>
<given-names>Lidia</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Godio</surname>
<given-names>Cristina</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Minguito de la Escalera</surname>
<given-names>Mar&#xed;a</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Alvarez-Ladr&#xf3;n</surname>
<given-names>Natalia</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Villarrubia</surname>
<given-names>Laura H.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Vega-P&#xe9;rez</surname>
<given-names>Adri&#xe1;n</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gonz&#xe1;lez-Cintado</surname>
<given-names>Leticia</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Dom&#xed;nguez-Andr&#xe9;s</surname>
<given-names>Jorge</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/504888"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Garc&#xed;a-Fojeda</surname>
<given-names>Bel&#xe9;n</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/386907"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Montero-Fern&#xe1;ndez</surname>
<given-names>Carlos</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1647407"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Casals</surname>
<given-names>Cristina</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/416276"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Autilio</surname>
<given-names>Chiara</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>P&#xe9;rez-Gil</surname>
<given-names>Jes&#xfa;s</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/46274"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Crainiciuc</surname>
<given-names>Georgiana</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hidalgo</surname>
<given-names>Andr&#xe9;s</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/507697"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>L&#xf3;pez-Bravo</surname>
<given-names>Mar&#xed;a</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2147430"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Ardav&#xed;n</surname>
<given-names>Carlos</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/45059"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Departamento de Inmunolog&#xed;a y Oncolog&#xed;a, Centro Nacional de Biotecnolog&#xed;a/ Consejo Superior de Investigaciones Cient&#xed;ficas (CSIC)</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Departamento de Bioqu&#xed;mica y Biolog&#xed;a Molecular, Facultad de Biolog&#xed;a, Universidad Complutense</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>    <aff id="aff3">
<sup>3</sup>
<institution>Instituto de Investigaci&#xf3;n Sanitaria Hospital 12 de Octubre i+12</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Centro Nacional de Investigaciones Cardiovaculares Carlos III</institution>, <addr-line>Madrid</addr-line>, <country>Spain</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Christophe Jean Desmet, University of Li&#xe8;ge, Belgium</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Takeshi Nabe, Setsunan University, Japan; Cecilia Johansson, Imperial College London, United Kingdom</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Carlos Ardav&#xed;n, <email xlink:href="mailto:ardavin@cnb.csic.es">ardavin@cnb.csic.es</email>; Mar&#xed;a L&#xf3;pez-Bravo, <email xlink:href="mailto:mlbravo@cnb.csic.es">mlbravo@cnb.csic.es</email>
</p>
</fn>
<fn fn-type="present-address" id="fn003">
<p>&#x2020;Present address: Adri&#xe1;n Vega-P&#xe9;rez, Sandra and Edward Meyer Cancer Center, Weill Cornell Medicine, New York, NY, United States; Leticia Gonz&#xe1;lez-Cintado, Novel Mechanisms of Atherosclerosis Program Centro Nacional de Investigaciones Cardiovaculares Carlos III, Madrid, Spain; Jorge Dom&#xed;nguez-Andr&#xe9;s, Radboud Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, Netherlands; Chiara Autilio, Laboratory of Clinical Microbiology and Virology, Ospedale San Carlo di Potenza, Potenza, Italy; Mar&#xed;a L&#xf3;pez-Bravo, Departamento de Microbiolog&#xed;a Microbiana, Centro Nacional de Biotecnolog&#xed;a/CSIC, Madrid, Spain</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>05</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1125984</elocation-id>
<history>
<date date-type="received">
<day>16</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>20</day>
<month>04</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Feo-Lucas, Godio, Minguito de la Escalera, Alvarez-Ladr&#xf3;n, Villarrubia, Vega-P&#xe9;rez, Gonz&#xe1;lez-Cintado, Dom&#xed;nguez-Andr&#xe9;s, Garc&#xed;a-Fojeda, Montero-Fern&#xe1;ndez, Casals, Autilio, P&#xe9;rez-Gil, Crainiciuc, Hidalgo, L&#xf3;pez-Bravo and Ardav&#xed;n</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Feo-Lucas, Godio, Minguito de la Escalera, Alvarez-Ladr&#xf3;n, Villarrubia, Vega-P&#xe9;rez, Gonz&#xe1;lez-Cintado, Dom&#xed;nguez-Andr&#xe9;s, Garc&#xed;a-Fojeda, Montero-Fern&#xe1;ndez, Casals, Autilio, P&#xe9;rez-Gil, Crainiciuc, Hidalgo, L&#xf3;pez-Bravo and Ardav&#xed;n</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Respiratory disorders caused by allergy have been associated to bronchiolar inflammation leading to life-threatening airway narrowing. However, whether airway allergy causes alveolar dysfunction contributing to the pathology of allergic asthma remains unaddressed. To explore whether airway allergy causes alveolar dysfunction that might contribute to the pathology of allergic asthma, alveolar structural and functional alterations were analyzed during house dust mite (HDM)-induced airway allergy in mice, by flow cytometry, light and electron microscopy, monocyte transfer experiments, assessment of intra-alveolarly-located cells, analysis of alveolar macrophage regeneration in <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic> chimeras, analysis of surfactant-associated proteins, and study of lung surfactant biophysical properties by captive bubble surfactometry. Our results demonstrate that HDM-induced airway allergic reactions caused severe alveolar dysfunction, leading to alveolar macrophage death, pneumocyte hypertrophy and surfactant dysfunction. SP-B/C proteins were reduced in allergic lung surfactant, that displayed a reduced efficiency to form surface-active films, increasing the risk of atelectasis. Original alveolar macrophages were replaced by monocyte-derived alveolar macrophages, that persisted at least two months after the resolution of allergy. Monocyte to alveolar macrophage transition occurred through an intermediate stage of pre-alveolar macrophage and was paralleled with translocation into the alveolar space, Siglec-F upregulation, and downregulation of CX3CR1. These data support that the severe respiratory disorders caused by asthmatic reactions not only result from bronchiolar inflammation, but additionally from alveolar dysfunction compromising an efficient gas exchange.</p>
</abstract>
<kwd-group>
<kwd>alveolar macrophages (AM)</kwd>
<kwd>monocytes</kwd>
<kwd>airway allergy inflammation</kwd>
<kwd>allergic asthma</kwd>
<kwd>alveolar dysfunction</kwd>
<kwd>pneumocyte hypertrophy</kwd>
<kwd>surfactant dysfunction</kwd>
</kwd-group>
<contract-num rid="cn001">PID2021-122748OB-I00</contract-num>    <contract-sponsor id="cn001">Spanish National Plan for Scientific and Technical Research and Innovation<named-content content-type="fundref-id">10.13039/501100017642</named-content>
</contract-sponsor>
<counts>
<fig-count count="6"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="44"/>
<page-count count="14"/>
<word-count count="7054"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Mucosal Immunity</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Airway allergy is triggered after contact of allergens with the airway epithelium, inducing complex deleterious innate and adaptive immune responses, that drive pathological changes of lung physiology, that can lead to asthma and eventually to death by anaphylaxis (<xref ref-type="bibr" rid="B1">1</xref>). Asthmatic reactions can cause life-threatening respiratory disorders, that have been associated with a severe airway inflammation, involving mucus hypersecretion, subepithelial fibrosis, hyperplasia of smooth muscle and bronchoconstriction, leading to critical narrowing of airway lumen (<xref ref-type="bibr" rid="B1">1</xref>). Nevertheless, whether airway allergy cause alveolar dysfunction, and thus compromise gas exchange, remains unaddressed.</p>
<p>Alveoli are essentially composed of alveolar type 1 (AT1) and type 2 (AT2) epithelial cells, responsible for gas exchange and surfactant production and recycling, respectively, alveolar macrophages (AM&#xd8;s), and capillaries (<xref ref-type="bibr" rid="B2">2</xref>). AT1 cells, representing around 10% of alveolar cells and covering more than 95% of the alveolar surface, are essential for gas exchange, whereas AT2 cells, representing around 60% of alveolar cells, but covering less than 5% of the alveolar surface, are responsible for surfactant production and recycling, and for alveolar repair (<xref ref-type="bibr" rid="B2">2</xref>). Pulmonary surfactant is composed of complex macromolecular aggregates of lipids and surfactant-associated proteins and has a crucial role in lung physiology by reducing the surface tension at the air-liquid interface existing between alveolar gas and the aqueous hypophase lining the alveolar epithelial cell surface, preventing alveolar and terminal airway collapse at end-expiration (<xref ref-type="bibr" rid="B3">3</xref>). AM&#xd8;s are crucial for defense against lung infections and fulfill a critical function in surfactant recycling, since defective AM&#xd8; development or function leads to proteinosis, due to intra-alveolar surfactant accumulation, and consequently to a severe reduction in gas exchange (<xref ref-type="bibr" rid="B4">4</xref>). AM&#xd8;s present in the adult mouse are generated during the embryonic life from yolk sac macrophages and fetal liver monocytes and maintained by self-renewal (<xref ref-type="bibr" rid="B5">5</xref>), although it has been recently reported that they become progressively, yet partially, replaced by monocyte-derived AM&#xd8;s in non-pathological conditions (<xref ref-type="bibr" rid="B6">6</xref>).</p>
<p>As pointed out above, whether allergy asthma involve a dysfunction of the alveolar system remains unexplored. Using a mouse model of acute allergic asthma induced by house dust mite (HDM) extracts, our results demonstrate that HDM airway allergy caused a severe alveolar disorganization, involving pneumocyte hypertrophy and thickening of the alveolar lining, associated with profound alterations in the biophysical properties of pulmonary surfactant. Moreover, HDM allergy resulted in a massive elimination of the original embryonic AM&#xd8; population which was replaced by a new Ly6C<sup>high</sup> monocyte-derived AM&#xd8; population, that persisted at least two months after the resolution of the allergic reaction, and enabled the recovery of surfactant function.</p>
<p>In conclusion, our data provide, to our knowledge, the first experimental evidence that airway allergic reactions cause alveolar dysfunction and death of alveolar macrophages, and support that the severe respiratory disorders caused by allergic asthma not only result from airway inflammation, but also from profound, previously unknown, alterations in the alveolar system, suggesting that new therapeutic strategies against asthma should be designed based on a combined treatment of bronchiolar inflammation and alveolar dysfunction.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="s2_1">
<title>Mice</title>
<p>C57BL/6 CD45.2<sup>+</sup> (B6 or B6-CD45.2<sup>+</sup>) mice were purchased from Charles River (L&#x2019;Arbresle, France) and C57BL/6 CD45.1<sup>+</sup> (B6-CD45.1<sup>+</sup>) mice from Jackson (Maine). LysM-eGFP (<xref ref-type="bibr" rid="B7">7</xref>) and CX3CR1-eGFP (<xref ref-type="bibr" rid="B8">8</xref>) mice were supplied by A. Hidalgo (CNIC, Spain). 8-10-week old B6, B6-CD45.1<sup>+</sup> and LysM-eGFP mice were housed at the CNB Animal Facility on a 12/12 light/dark cycle. Littermates of the same sex were randomly assigned to experimental groups. Bone marrow (BM) from <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic> mice (<xref ref-type="bibr" rid="B9">9</xref>) was provided by S. Jung (The Weizmann Institute of Science, Israel). All the experiments were approved by CNB Animal Care Committee (protocol 312/14).</p>
</sec>
<sec id="s2_2">
<title>Induction of HDM-allergy</title>
<p>HDM-allergy was induced following a protocol modified from a protocol described in a previous report from our group (<xref ref-type="bibr" rid="B10">10</xref>). In brief, mice received an intraperitoneal injection of 5 x 10<sup>4</sup> monocyte-derived dendritic cells at day -7, followed, at day 0, by intratracheal administration of 20 &#x3bc;g HDM-extract (<italic>Dermatophagoides pteronyssinus</italic> extract; Greer Laboratories, Lenoir, North Carolina), in a total volume of 40 &#x3bc;l of PBS, under ketamine/xylazine anesthesia. Monocyte-derived dendritic cells were prepared as described (<xref ref-type="bibr" rid="B10">10</xref>) and incubated prior to injection for 4 hr with 30 &#x3bc;g/ml HDM extract.</p>
</sec>
<sec id="s2_3">
<title>Cell suspensions</title>
<p>Bronchoalveolar lavage (BAL) was performed with 3 x 1 mL EDTA-containing PBS. BAL cell suspensions were obtained after centrifugation for 5 min at 400g. Lung cell suspensions were obtained after performing a BAL; for this purpose lungs were cut into small pieces, digested with 180 &#x3bc;g/ml Liberase TM and 40 mg/ml DNAse (both from Roche, Mannheim, Germany) for 40 min at 37&#xb0;C, resuspended in RPMI supplemented with 10% FCS, filtered through 40-&#x3bc;m cell strainers (BD Pharmingen, San Diego, CA) and washed twice in EDTA-containing PBS after erythrocyte lysis by osmotic shock.</p>
</sec>
<sec id="s2_4">
<title>Thorax-shielded BM chimeras</title>
<p>CD45.1/CD45.2 thorax-shielded BM chimeras were established by intravenous (i.v.) injection of 5 x 10<sup>6</sup> BM cells from C57BL/6 (B6)-CD45.1<sup>+</sup> mice into 8-week old lethally irradiated B6-CD45.2<sup>+</sup> mice (single dose 10 Gy &#x3b3;-radiation, using a JL Shepherd Mark I-30 <sup>137</sup>Cs irradiator), in which the thorax was lead shield-protected. <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic>/CD45.1 thorax-shielded BM chimeras were established by i.v. injection of 5 x 10<sup>6</sup> BM cells from CD45.2<sup>+</sup> <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic> mice into 8-week old lethally irradiated, thorax-protected, B6-CD45.1<sup>+</sup> mice.</p>
</sec>
<sec id="s2_5">
<title>Monocyte transfer</title>
<p>4 x 10<sup>6</sup> BM Ly6C<sup>high</sup> monocytes, isolated as described (<xref ref-type="bibr" rid="B11">11</xref>), from LysM-eGFP mice, at d1 of HDM allergy, were transferred intravenously into B6 mice at d1 of HDM allergy.</p>
</sec>
<sec id="s2_6">
<title>Postmortem intratraqueal alveolar cell staining</title>
<p>Mice euthanized by controlled CO<sub>2</sub> inhalation overdose received 125 ng of Pacific Blue-conjugated anti-CD45 intratracheally (i.t.) in a total volume of 1 ml (corresponding to a 1/4.000 dilution); control mice received 1 ml of PBS intratracheally. The concentration and volume of Pacific Blue-conjugated anti-CD45 was determined in titration experiments in order to ensure an efficient staining of AM&#xd8;s while avoiding the diffusion of the antibody into the lung parenchyma. After 1 min intra-alveolarly-located cells were analyzed as described below.</p>
</sec>
<sec id="s2_7">
<title>Flow cytometry</title>
<p>Analysis of lung and BAL cell suspensions was performed after seven-color staining with FITC-conjugated anti-MHCII (clone 2G9; BD Pharmingen), PECy7-conjugated anti-CD11b (clone M1/70; eBioscience, San Diego, CA) or PECy7-conjugated anti-Ly-6G (clone 1A8; BD Pharmingen), APC-conjugated anti-CD64 (clone X54-5/7.1; Biolegend, San Diego, CA), APC-Cy7-conjugated anti-CD11c (clone HL3; BD Pharmingen), PE-conjugated anti-Siglec-F (E50-2440; BD Pharmingen), Pacific Blue-conjugated anti-CD45 (clone 30-F11; Biolegend) and biotin-conjugated anti-Ly6C (clone Al-21) followed by streptavidin-PerCP (BD Pharmingen). Analysis of dead AM&#xd8;s was performed after seven-color staining with PECy7-conjugated anti-Ly-6G, PE-conjugated anti-Siglec-F, Pacific Blue-conjugated anti-CD45, PerCP/Cy5.5-conjugated anti-CD64 (clone X54-5/7.1; Biolegend) and biotin-conjugated anti-Ly6C, followed by streptavidin-APC-Cy7 (Biolegend). Cells were then resuspended at 1&#x2009;&#xd7;&#x2009;10<sup>6</sup> cells/ml in 100&#x2009;&#x3bc;l binding buffer (Biolegend) and incubated with FITC-conjugated Annexin-V (Biolegend) for 15&#x2009;min at 4&#x2009;&#xb0;C in the dark. AM&#xd8;s death was assessed by Annexin-V staining after gating on AM&#xd8;s. Analysis of CD45.1/CD45.2 BM chimeras was performed after seven-color staining with FITC-conjugated anti-MHCII, PECy7-conjugated anti-Ly-6G, APC-conjugated anti-CD64, PE-conjugated anti-Siglec-F, Brilliant Violet 421-conjugated anti-CD45.1 (clone A20; Biolegend), PerCP/Cy5.5-conjugated anti-CD45.2 (clone 104; Biolegend) and biotin-conjugated anti-Ly6C, followed by streptavidin-APC-Cy7. Analysis of <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic>/CD45.1 BM chimeras was performed after seven-color staining with PECy7-conjugated anti-CD11b, APC-conjugated anti-CD64, PE-conjugated anti-Siglec-F and anti-Ly6G, Brilliant Violet 421-conjugated anti-CD45.1, PerCP/Cy5.5-conjugated anti-CD45.2 and biotin-conjugated anti-Ly6C, followed by streptavidin-APC-Cy7, or after seven-color staining with PECy7-conjugated anti-CD11b, APC-conjugated anti-CD64, PE-conjugated anti-Siglec-F, Brilliant Violet 421-conjugated anti-CD45.1, PerCP/Cy5.5-conjugated anti-CD45.2 and biotin-conjugated anti-MHC-II, followed by streptavidin-APC-Cy7. Analysis of cells derived from intravenously-transferred LysM-eGFP-monocytes was performed after six-color staining with PECy7-conjugated anti-Ly-6G, APC-conjugated anti-MHC-II (clone M5/114.15.2; eBioscience), PE-conjugated anti-Siglec-F, Pacific Blue-conjugated anti-CD45, PerCP/Cy5.5-conjugated anti-CD64 and biotin-conjugated anti-Ly6C, followed by streptavidin-APC-Cy7. Analysis of intra-alveolarly-located cells was performed after seven-color staining with FITC-conjugated anti-MHCII, PECy7-conjugated anti-CD11b, APC-conjugated anti-CD64, APC-Cy7-conjugated anti-CD11c, PE-conjugated anti-Siglec-F, PerCP/Cy5.5-conjugated anti-CD45.2 and biotin-conjugated anti-Ly6C, followed by streptavidin-APC-Cy7.</p>
<p>Autofluorescence was detected using a 525/50-nm band pass filter after excitation with a 405 nm-violet laser.</p>
<p>Analysis of CD206 expression was performed after seven-color staining with FITC-conjugated anti-MHCII, PECy7-conjugated anti-Ly-6G, PE-conjugated anti-Siglec-F, Pacific Blue-conjugated anti-CD45, PerCP/Cy5.5-conjugated anti-CD64 and biotin-conjugated anti-Ly6C, followed by streptavidin-APC-Cy7. Subsequently, cells were fixed in Cytofix/Cytoperm solution (BD Pharmingen) and incubated with APC-conjugated anti-CD206 (clone C068C2; Biolegend). Data were acquired on a LSRII cytometer (BD Biosciences, San Jos&#xe9;, CA) and analyzed using FlowJo X software (Tree Star, Ashland, OR).</p>
</sec>
<sec id="s2_8">
<title>Electron microscopy</title>
<p>Lungs were fixed with 2.5% glutaraldehyde and 4% paraformaldehyde in PBS for 2 hours at RT and overnight at 4&#xb0;C, postfixed with 1% osmium tetroxide/0,8% potassium ferricyanide for 1 h at 4&#xb0;C, dehydrated in graded acetone solutions and embedded in Epon-812 (TAAB Laboratories Ltd., Berkshire, UK). Semi-thin sections (1 &#xb5;m) were obtained with a Leica EM UC6 ultramicrotome and stained with toluidine blue. Images were acquired with a Leica DM2500 microscope (Leica, Wetzlar, Germany). Ultra-thin sections (80 nm) were obtained with a Leica EM UC6 ultramicrotome, counterstained with uranyl acetate and lead citrate and examined with a Jeol 1011 transmission electron microscope (Tokyo, Japan).</p>
</sec>
<sec id="s2_9">
<title>Biochemical analysis of BAL</title>
<p>Cell-free BAL supernatant was obtained by centrifugation for 10 min at 700 g at 4&#xb0;C. Total BAL protein concentration was measured in cell-free BAL supernatants by Lowry&#x2019;s method modified by adding sodium dodecyl sulphate (SDS). Lipid extraction was performed by chloroform and methanol extraction and quantitation of BAL phospholipids was achieved by phosphorus analysis, as described (<xref ref-type="bibr" rid="B12">12</xref>).</p>
</sec>
<sec id="s2_10">
<title>Analysis of surfactant proteins by western blot</title>
<p>Electrophoretic analysis of BAL proteins was performed under reducing conditions (5% &#x3b2;-mercaptoethanol) by one-dimensional SDS/PAGE, using running gels of 12% for SP-A and SP-D, 16% for SP-B and 18% for SP-C. In the case of SP-A and SP-D, the same amount of BAL protein was applied for all samples. In case of SP-B and SP-C, the same amount of BAL phospholipids was applied for all samples. After electrophoresis, samples were transferred to polyvinylidene fluoride membranes (Bio-Rad Laboratories, Hercules, CA). Blotting was performed as previously described (<xref ref-type="bibr" rid="B12">12</xref>) SP-A and SP-B, were detected using anti-human-SP-A and anti-porcine SP-B polyclonal antibodies prepared in our laboratory. SP-C was detected using and an anti-recombinant human SP-C polyclonal antibody kindly provided by Nycomed Pharma (Konstanz, Germany). Secondary HRP-conjugated anti-rabbit IgG antibodies were from Cell Signaling Technologies, (Danvers, MA). SP-D was detected with an anti SP-D mAb (clone 1A10A9, Seven Hills Bioreagents, Cincinnati, OH), followed by a secondary anti-mouse IgG antibody (Sigma-Aldrich, St. Louis, MO). Proteins were visualized using chemiluminiscence detection (Amersham Hyperfilm ECL, GE Healthcare, Little Chalfont, UK). Protein bands were quantified by densitometry using the Quantity One software (Bio-Rad Laboratories).</p>
</sec>
<sec id="s2_11">
<title>Analysis of surfactant biophysical properties</title>
<p>Total surfactant complexes (large + small aggregates) were precipitated from cell-free BAL supernatants by ultracentrifugation for 60 min at 100,000 g at 4&#xb0;C, and diluted to 10 mg/mL phosphatidylcholine concentration with Tris buffer (5mM; pH7) containing 150 mM NaCl (Sigma-Aldrich). Phosphatidylcholine concentration was measured using enzymatic methods (Spinreact, Gerona, Spain) as previously published (<xref ref-type="bibr" rid="B13">13</xref>). The interfacial activity of surfactant samples was assessed by captive bubble surfactometry, a technique allowing to analyze surfactant function during breathing-like compression-expansion cycles (<xref ref-type="bibr" rid="B14">14</xref>). To this end, 200 nL of surfactant, at 10 mg/mL, was applied at the surface of an air bubble in a Captive Bubble Surfactometer (CBS) at a frequency of 30 compression-expansion cycles/min, as described in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;1</bold>
</xref>. Measurements were performed in triplicate for each surfactant sample.</p>
</sec>
<sec id="s2_12">
<title>Quantification and statistical analysis</title>
<p>Data are presented as mean &#xb1; SD (or mean &#xb1; SEM), as indicated in the legend of each figure. Statistical parameters including the exact value of n, precision measures (mean &#xb1; SD or SEM) and statistical significance are reported in the Figures and the Figure Legends when necessary. Data are judged to be statistically significant when p &lt; 0.05 by two-tailed Student&#x2019;s t test. In figures, asterisks denote statistical significance (*, p &lt; 0.05; **, p &lt; 0.01; ***, p &lt; 0.001). Statistical analysis was performed using Microsoft Excel or GraphPad PRISM 6 softwares.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>HDM allergy caused alveolar disorganization and AM&#xd8; disappearance</title>
<p>Airway allergy was induced by HDM following the protocol described in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>. HDM-driven allergy caused an airway inflammation similar to human allergic asthma (<xref ref-type="bibr" rid="B15">15</xref>), that involved a massive leukocyte infiltration into the lung and eosinophilia, peaking at day 5 (d5) after i.t. HDM-extract challenge (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1B</bold>
</xref>, <xref ref-type="fig" rid="f1">
<bold>C</bold>
</xref>), paralleled by bronchiolar inflammation, characterized by increased mucus production and fibrosis (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1D</bold>
</xref>). Unexpectedly, HDM allergy caused a profound disorganization of the alveolar system leading to reduction of the alveolar space (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1E</bold>
</xref>). Neutrophils were also actively recruited by d1, but their number dropped by d8 (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1C</bold>
</xref>). Analysis of lung cell suspensions revealed that the AM&#xd8; population, characterized as CD11c<sup>high</sup> Siglec-F<sup>high</sup> autofluorescent cells (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1B, F</bold>
</xref>), was markedly reduced at d3, and almost undetectable at d5 (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1B, C</bold>
</xref>). AM&#xd8; reduction was concomitant with an increase in eosinophils (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1C</bold>
</xref>) and Annexin-V<sup>+</sup> AM&#xd8;s (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1G</bold>
</xref>), suggesting the reduction in AM&#xd8;s was due to cell death. AM&#xd8; disappearance was also noticeable in the BAL that contained a large number of eosinophils at d5-d8 (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1H, I</bold>
</xref>). Importantly, only a fraction of AM&#xd8;s can be harvested by BAL (&#x301c;10-15% of total AM&#xd8;s), either in control or allergic mice, indicating that AM&#xd8; studies have to be performed in lung cell suspensions, but not in BAL cell suspensions.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>HDM allergy caused alveolar disorganization and AM&#xd8; disappearance. <bold>(A)</bold> Protocol of induction of HDM allergy used in this study; i.p.: intraperitoneal; i.t.: intratracheal; mo-DCs: monocyte-derived dendritic cells <bold>(B)</bold> Flow cytometry (FACS) analysis of AM&#xd8;s and eosinophils in lung cell suspensions at the indicated times. <bold>(C)</bold> Absolute number per mouse of the indicated lung cell populations. <bold>(D)</bold> Lung semi-thin sections showing the increase in airway mucus production and peribronchiolar fibrosis from d0 to d5. Toluidine blue staining. <bold>(E)</bold> Lung semi-thin lung sections showing the alveolar disorganization and pneumocyte hypertrophy from d0 to d5; toluidine blue staining. <bold>(F)</bold> FACS analysis of autofluorescence of AM&#xd8;s and Siglec-F<sup>-</sup> CD64<sup>+</sup> cells (monocytes and moCs). <bold>(G)</bold> Quantification of Annexin-V<sup>+</sup> AM&#xd8;s. <bold>(H)</bold> FACS analysis of AM&#xd8;s and eosinophils in BAL cell suspensions at the indicated times. <bold>(I)</bold> Absolute cell number per mouse of the indicated BAL cell populations. In C and I the percentage of each population among all CD45<sup>+</sup> lung cells is indicated. Similar results were obtained in 5 independent experiments.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1125984-g001.tif"/>
</fig>
<p>From d8 to d13, eosinophils dropped significantly, and a population of autofluorescent CD11c<sup>high</sup> cells with lower Siglec-F expression than control AM&#xd8;s, although comparable in number, was detectable in lung (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1B, C</bold>
</xref>) and BAL cell suspensions (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1H, I</bold>
</xref>) indicating that, at least in part, CD11c<sup>high</sup> Siglec-F<sup>int</sup> cells were intra-alveolarly located. By d33, a population of AM&#xd8;s expressing CD11c and Siglec-F levels matching those of control AM&#xd8;s was noticeable, and AM&#xd8; and eosinophil number returned to basal levels (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1B, C</bold>
</xref>). These data led us to hypothesize that at the peak of eosinophilia and alveolar disorganization, HDM allergy caused the death of original AM&#xd8;s, that were replaced by new-AM&#xd8;s.</p>
</sec>
<sec id="s3_2">
<title>AM&#xd8;s newly-formed during the resolution of HDM allergy derived from monocytes</title>
<p>To address whether new-AM&#xd8;s were originated by self-renewal from original embryonic-derived AM&#xd8;s, or <italic>de novo</italic> from BM progenitors, AM&#xd8; regeneration was analyzed CD45.1/CD45.2 chimeric mice, in which the hematopoietic system was mainly of donor origin, while AM&#xd8;s were host-derived. To this end, BM cells from B6-CD45.1<sup>+</sup> mice were transferred into B6-CD45.2<sup>+</sup> mice, that were subjected to lethal &#x3b3;-irradiation after protecting the thorax with a lead shielding. (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). At d-7, &#x301c;90% AM&#xd8;s were of host-derived, whereas &#x301c;80-90% of lung Ly6C<sup>high</sup> monocytes (hereafter monocytes), B cells and neutrophils, were donor-derived (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2B, C</bold>
</xref>). A comparable chimerism was found in BM monocytes, B cells and neutrophils during HDM allergy (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>), reflecting that the lead shield had provided protection not only to AM&#xd8;s, but also to thoracic hematopoietic foci that generated &#x301c;10-20% host-derived monocytes, B cells and neutrophils. At d13&#x301c;70% AM&#xd8;s were donor-derived (corresponding to &#x301c;90% BM origin, normalized BM monocyte chimerism), revealing that original AM&#xd8;s were almost entirely replaced during the allergic reaction by a new, BM-derived, AM&#xd8; population (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2B, C</bold>
</xref>). Interestingly, 2 months after allergy resolution &#x301c;70% of AM&#xd8;s were still of donor origin (corresponding to &#x301c;95% BM origin, normalized BM monocyte chimerism), revealing that BM-derived AM&#xd8;s persisted long after allergy had subsided (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2B, C</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>AM&#xd8;s were newly-formed from BM precursors during HDM allergy. <bold>(A)</bold> Protocol for the induction of HDM allergy in CD45.1/CD45.2 thorax-shielded BM chimeras. <bold>(B)</bold> FACS analysis of CD45.1/CD45.2 thorax-shielded BM chimeras at the indicated times. <bold>(C)</bold> Quantification of donor-host chimerism of the indicated lung cell populations of CD45.1/CD45.2 thorax-shielded BM chimeras at the indicated times. <bold>(D)</bold> Quantification of donor-host chimerism of the indicated BM cell populations at the indicated times; data are expressed as mean &#xb1; SD of 4 mice per condition. Similar results were obtained 2 independent experiments.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1125984-g002.tif"/>
</fig>
<p>Under experimental or pathological conditions new tissue-resident macrophages, such as Kupffer cells, microglial cells, large peritoneal macrophages or AM&#xd8;s can be generated from monocytes (<xref ref-type="bibr" rid="B16">16</xref>).</p>
<p>To assess whether AM&#xd8;s newly-formed during HDM allergy were derived from monocytes, we first analyzed the kinetics of monocytes and monocyte-derived cells (moCs), defined following the gating strategy described in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>. In steady state, lung mature moCs were characterized as CD64<sup>+</sup> Ly6C<sup>low</sup> MHC class-II (MHCII)<sup>high</sup> Siglec-F<sup>-</sup> cells, as reported (<xref ref-type="bibr" rid="B17">17</xref>). Monocytes (defined as CD64<sup>+</sup> Ly6C<sup>high</sup> MHCII<sup>-</sup> Siglec-F<sup>-</sup> cells) were actively recruited to the lung at d1-d3, and dropped by d5 (<xref ref-type="fig" rid="f3">
<bold>Figures&#xa0;3B, C</bold>
</xref>). Monocyte differentiation into moCs, occurred through an intermediate stage of CD64<sup>+</sup> Ly6C<sup>high</sup> MHCII<sup>low</sup> Siglec-F<sup>-</sup> immature moCs (P2; <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). moCs peaked at d3 and diminished progressively as allergy declined (<xref ref-type="fig" rid="f3">
<bold>Figures&#xa0;3B, C</bold>
</xref>), suggesting that moCs were generated after a single wave of monocyte recruitment.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Intravenously transferred monocytes generated AM&#xd8;s during HDM allergy. <bold>(A)</bold> FACS gating strategy used to analyze lung cell suspensions; the percentage of each population among all CD45<sup>+</sup> lung cells is indicated. <bold>(B)</bold> Flow cytometry analysis of AM&#xd8;s, Ly6C<sup>high</sup> monocytes and mo-Cs at the indicated times, performed as indicated in A; the percentage of monocytes and moCs among all CD45<sup>+</sup> lung cells is indicated. <bold>(C)</bold> Absolute number per mouse of Ly6C<sup>high</sup> monocytes and mo-Cs at the indicated times. <bold>(D)</bold> Protocol of intravenous transfer of monocytes from LysM-eGFP mice into B6 mice at d1 of HDM allergy; i.p.: intraperitoneal; i.t.: intratracheal; i.v.: intravenous. <bold>(E)</bold> FACS analysis of the progeny of intravenously transferred eGFP<sup>+</sup> monocytes at the indicated times; the percentage of eGFP<sup>+</sup> populations is indicated. <bold>(F)</bold> Phenotype of monocytes, moCs, pre-AM&#xd8;s and AM&#xd8;s. In <bold>(A, B, E)</bold>, diagonal dashed red lines, in MHCII vs Ly6C plots, define immature moCs (P2; upper left) and mature moCs (P3; lower right). Similar results were obtained 5 independent experiments <bold>(A&#x2013;C)</bold> and in 2 independent experiments <bold>(D, E)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1125984-g003.tif"/>
</fig>
<p>To address whether monocytes recruited to the lung were able to generate AM&#xd8;s during HDM allergy, fluorescence-trackable BM monocytes were isolated from LysM-eGFP mice at d1 after HDM challenge, i.e. when monocytes started to be recruited (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>), and transferred i.v. into B6 mice at d1 (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>). At d2, 24 h after transfer, &#x301c;50% eGFP<sup>+</sup> cells were monocytes, and &#x301c;50% were Ly6C<sup>high</sup> MHCII<sup>int</sup> Siglec-F<sup>-</sup> immature moCs (P2; <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3E</bold>
</xref>). At d5, &#x301c;15% eGFP<sup>+</sup> cells were monocytes and &#x301c;85% were Ly6C<sup>low</sup> MHCII<sup>high</sup> Siglec-F<sup>-</sup> mature moCs. At d13 &#x301c;60% of lung eGFP<sup>+</sup> cells were MHC II<sup>int</sup> Siglec-F<sup>int</sup> new-AM&#xd8;s, whereas the rest were Ly6C<sup>low</sup> MHCII<sup>high</sup> moCs expressing intermediate levels of Siglec-F, that based on their phenotype, kinetics and alveolar location (as demonstrated later in this report) were immature AM&#xd8;s, hereafter pre-AM&#xd8;s. At this stage, endogenous moCs could be subdivided in Ly6C<sup>low</sup> MHCII<sup>high</sup> Siglec-F<sup>int</sup> pre-AM&#xd8;s and Ly6C<sup>low</sup> MHCII<sup>high</sup> Siglec-F<sup>-</sup> mature moCs (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3E</bold>
</xref>). By d33, all lung eGFP<sup>+</sup> cells were fully differentiated MHCII<sup>int</sup> Siglec-F<sup>high</sup> new-AM&#xd8;s, pre-AM&#xd8;s being no longer detectable (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3E</bold>
</xref>), supporting that new-AM&#xd8;s were generated from monocytes, through an intermediate Ly6C<sup>low</sup> MHCII<sup>high</sup> Siglec-F<sup>int</sup> pre-AM&#xd8; population. The phenotype of monocytes, moCs, pre-AM&#xd8;s and AM&#xd8;s is summarized in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3F</bold>
</xref>.</p>
<p>Monocyte transfer experiments allowed to assess the ability of exogenous monocytes to be recruited to the lung and to monitor the different phases of their differentiation into AM&#xd8;s, but do not provide a definitive demonstration of the monocytic origin of endogenous new-AM&#xd8;s generated during HDM allergy. This issue was addressed analyzing AM&#xd8; regeneration in <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic>/CD45.1 BM chimeras (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), in which CX3CR1 promoter-driven Cre recombinase expression leads to the rearrangement of the YFP reporter locus, establishing a stable fluorescent labeling (<xref ref-type="bibr" rid="B9">9</xref>). As expected, 4 weeks after BM transfer, &#x301c;90% AM&#xd8;s were of host origin whereas &#x301c;70-80% monocytes, B cells and neutrophils, were donor-derived (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). At this time point, &#x301c;15% donor-derived BM monocytes and &#x301c;30% donor-derived blood and lung monocytes were YFP<sup>+</sup> (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>), most likely due to their short life span not allowing for 100% rearrangement of YFP locus. At d5, &#x301c;30% donor-derived lung monocytes expressed YFP, and a comparable YFP expression was found on donor-derived moCs (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>), whereas at d33 up to 80% donor-derived moCs expressed YFP (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>), reflecting that moCs generated during the resolution of allergy had a longer life span and maintained the activity of the CX3CR1 promoter, leading to an efficient YFP locus rearrangement. Interestingly, at this time point &#x301c;40% donor-derived lung monocytes and new-AM&#xd8;s expressed YFP. These results indicate that transition from monocytes to new-AM&#xd8;s was concomitant with the inactivation of the CX3CR1 promoter and therefore with the shut off of Cre-mediated YFP locus rearrangement. In support of this postulate, CX3CR1 expression was downregulated from monocytes to AM&#xd8;s, as assessed by the analysis of CX3CR1-eGFP mice during HDM allergy (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4F</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>AM&#xd8;s newly-formed during the resolution of HDM allergy derived from monocytes. <bold>(A)</bold> Protocol for the induction of HDM allergy in <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic>/CD45.1 thorax-shielded BM chimeras. <bold>(B)</bold> Quantification of donor-host chimerism of the indicated lung cell populations at d-7 of HDM allergy. <bold>(C)</bold> Quantification of YFP expression by BM, blood and lung donor-type monocytes at d-7 of HDM allergy. <bold>(D)</bold> FACS analysis and quantification of YFP expression by the indicated lung cell populations at d5 of HDM allergy. <bold>(E)</bold> FACS analysis and quantification of YFP expression by the indicated lung cell populations at d33 of HDM allergy. <bold>(F)</bold> FACS analysis and quantification of CX3CR1 expression by monocytes, moCs and AM&#xd8;s, at the indicated days during HDM allergy in CX3CR1-eGFP mice, assessed by the expression of eGFP. Quantification of CX3CR1 expression was based on the mean fluorescence intensity (MFI) of eGFP expression. In <bold>(D&#x2013;F)</bold>, dark grey profiles correspond to YFP (or eGFP in <bold>F</bold>) expression, and red lined light grey profiles correspond to background staining in B6 mice; the percentage of YFP<sup>+</sup> cells (or eGFP<sup>+</sup> cells in <bold>F</bold>) is indicated. Data are expressed as mean &#xb1; SD of 6 mice per condition.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1125984-g004.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Differentiation of monocytes into pre-AM&#xd8;s was paralleled by their translocation into the alveolar space</title>
<p>We next sought to addressed whether monocyte differentiation into AM&#xd8;s occurred extra- or intra-alveolarly, by assessing the location of pre-AM&#xd8;s based on their autofluorescence, a characteristic of AM&#xd8;s associated to their intra-alveolar location, which has been correlated to their exposure to environmental particulate matter (<xref ref-type="bibr" rid="B18">18</xref>). In control mice, and at d1 and d13 of HDM allergy, AM&#xd8;s, but neither monocytes nor MHCII<sup>high</sup> Siglec-F<sup>-</sup> moCs, were autofluorescent (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). However, at d13, both pre-AM&#xd8; pre-AM&#xd8;s and new-AM&#xd8;s displayed autofluorescence levels and a FSC vs SSC profile comparable to those of AM&#xd8;s from control mice, supporting that monocyte differentiation into pre-AM&#xd8;s determined their translocation into the alveolar space. To confirm this hypothesis, intra-alveolarly-located cells were detected by i.t. administration of anti-CD45 antibodies, as described in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>. pre-AM&#xd8;s and new-AM&#xd8;s, but neither monocytes nor the majority of moCs, were stained with anti-CD45 (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>), confirming the intra-alveolar location of pre-AM&#xd8;s. These results further support that new-AM&#xd8;s were generated from monocytes, through an intermediate pre-AM&#xd8; population. pre-AM&#xd8;s translocation into the alveolar space was therefore concomitant with the acquisition of autofluorescence and upregulation of Siglec-F and the M2 macrophage marker CD206 (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5D</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Differentiation of monocytes into AM&#xd8;s was paralleled by their translocation into the alveolar space. <bold>(A)</bold> FACS analysis of autofluorescence of the indicated lung cell populations, in untreated mice, and at d1 and d13 of HDM allergy; the percentage of autofluorescent cells is indicated. <bold>(B)</bold> Protocol for the staining of intra-alveolarly-located cells by i.t. administration of Pacific Blue-conjugated anti-CD45 antibodies. <bold>(C)</bold> Detection by FACS of lung populations labeled by i.t. administration of Pacific Blue-conjugated anti-CD45 at d8 of HDM allergy; the percentage of cells labeled by intratracheally-administered anti-CD45 is indicated; i.p.: intraperitoneal; i.t.: intratracheal. <bold>(D)</bold> FACS analysis and quantification of CD206 expression by the indicated cell populations at d13 of HDM allergy; dark grey profiles correspond to CD206 expression; red lined light grey profiles correspond to background staining with an isotype control antibody. Data are expressed as mean &#xb1; SD of 5 mice per condition.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1125984-g005.tif"/>
</fig>
</sec>
<sec id="s3_4">
<title>HDM allergy led to a reduced alveolar-capillary gas exchange surface and altered surfactant composition and biophysical properties</title>
<p>At d5, HDM allergy caused a severe bronchiolar inflammation characterized by increased mucus production and fibrosis (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1D</bold>
</xref>), as well as profound alterations in alveolar organization (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>), that included AM&#xd8; disappearance (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>) and massive alveolar eosinophilia (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1H</bold>
</xref>). In addition, electron microscopy studies revealed an extensive pneumocyte hypertrophy and leukocyte extravasation into the alveolar space at d5 (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6B1, B2</bold>
</xref>), not detectable in control lung (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). Pneumocyte hypertrophy led to a marked thickening of alveolar wall and consequently to a significant reduction of the alveolar space and gas-exchange surface area (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6D, E</bold>
</xref>). By d13, the alveolar organization was essentially reestablished and bronchiolar inflammation was resolved (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>).</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>HDM allergy led to a reduced alveolar-capillary gas exchange surface and altered surfactant composition and biophysical properties. <bold>(A)</bold> Lung semi-thin sections at the indicated times; toluidine blue staining. <bold>(B1, B2)</bold> Ultra-thin lung sections analyzed by electron microscopy at d5 of HDM allergy, showing hypertrophic pneumocytes (<bold>B1</bold>, red asterisks) and leukocytes in the alveolar space (B2, yellow asterisks); light green: alveolar space. <bold>(C)</bold> Ultra-thin lung of a control non-allergic lung; light green: alveolar space. <bold>(D)</bold> Lung semi-thin sections from untreated mice and at d5; light green: alveolar space. <bold>(E)</bold> Quantification of the alveolar space areas defined in the micrographs shown in <bold>(B)</bold> Data expressed as mean alveolar space area/micrograph &#xb1; SD of 4 micrographs/condition. <bold>(F, G)</bold> Total BAL phospholipid <bold>(F)</bold> and protein <bold>(G)</bold> concentration in cell-free BAL supernatants at indicated times. <bold>(H)</bold> Analysis of surfactant proteins by Western blot and protein band quantification by densitometry, at indicated times. <bold>(I, J)</bold> Surface tension (&#x3b3;) after initial interfacial adsorption <bold>(I)</bold>, and after bubble expansion and surfactant reextension <bold>(J)</bold>, upon injection of surfactant at the surface of a bubble air-liquid interface, measured by CBS in surfactant samples at indicated times. Surface tension at the interface measured immediately before and after surfactant injection was 70 and 30 mN/m. <bold>(K)</bold> Dynamic &#x3b3;-area isotherms obtained during compression-expansion cycles measured by CBS. Changes in surface tension with respect to bubble relative area are shown for the 1<sup>st</sup>, 2<sup>nd</sup>, 3<sup>rd</sup>, 4<sup>th</sup>, 5<sup>th</sup>, 10<sup>th</sup> and 20<sup>th</sup> cycles. <bold>(L)</bold> Average minimum surface tension (&#x3b3; min), <bold>(M)</bold> mean area reduction required to produce minimum surface tension (&#x394; relative area) and <bold>(N)</bold> average maximum surface tension (&#x3b3; max), obtained during the dynamic isotherms described in <bold>(I)</bold>. In D-L, data are expressed as mean &#xb1; SEM of five mice/condition. Similar results were obtained in 3 independent experiments.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1125984-g006.tif"/>
</fig>
<p>Since lung surfactant has an essential role in stabilizing the alveolar gas-aqueous interface and preventing lung collapse, we asked whether the disrupted alveolar organization and pneumocyte hypertrophy observed at the peak of HDM allergy, altered the composition and biophysical properties of lung surfactant. Total phospholipid concentration present in BAL remained unchanged until d5, but underwent a marked increase during the resolution of allergy (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6F</bold>
</xref>). In contrast, total BAL protein concentration increased during the induction of allergy and dropped during the resolution phase (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6G</bold>
</xref>). Surfactant-associated proteins SP-A and SP-D increased during the induction of the allergic reaction and more markedly from d8, i.e. during the resolution of HDM allergy, as assessed by western blot (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6H</bold>
</xref>). In contrast, SP-B and SP-C underwent a strong reduction by d5 reaching values significantly lower than those found in non-allergic mice (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6H</bold>
</xref>).</p>
<p>Based on these results, whether these changes in surfactant proteins affected the biophysical properties of lung surfactant was analyzed by captive bubble surfactometry (CBS), a method described in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;1</bold>
</xref>, allowing to assess the ability of a surfactant sample to form a surface-active film competent to produce and sustain a very low surface tension at the air-liquid interface of an air microbubble, mimicking an alveolar chamber. By monitoring surface tension changes, we analyzed the &#x201c;initial adsorption&#x201d; of the surfactant to the air-liquid interface, the ability of adsorbed surfactant to spread and re-equilibrate into an expanding interface, or &#x201c;post-expansion adsorption&#x201d;, and the ability of the formed film to produce the very low surface tensions (&lt;5 mN/m) required to stabilize the lungs during compression-expansion cycles, or &#x201c;dynamic isotherms&#x201d;, that mimic breathing dynamics (<xref ref-type="bibr" rid="B19">19</xref>).</p>
<p>Surfactant from d-7 and d1 adsorbed (initial adsorption) and spread (post-expansion adsorption) at the air-liquid interface almost instantaneously, reducing surface tension from &#x301c;70 mN/m to below 25 mN/m in less than 1 s (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6I, J</bold>
</xref>). In contrast, surfactant from d5 required more than 20 s to reach similar low surface tension values. Interestingly, fast interfacial adsorption, both initially and upon expansion, was restored in surfactant from d13. Upon compression-expansion cycles, interfacial films formed by surfactant from d-7 and d1 produced extremely low surface tensions at the end of every cycle (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6K, L</bold>
</xref>), with less than 20% area reduction from the second cycle (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6K, M</bold>
</xref>). These very low tension values were repeatedly achieved along 20 cycles, with very little hysteresis (assessed by the area enclosed between compression and expansion moieties of isotherms), indicating that the interfacial film had a high stability. Films formed by surfactant from d5 produced a deficient stabilization of the interface during compression-expansion cycles (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6K</bold>
</xref>). Only in some cases d5 films reached low enough surface tensions, yet requiring larger area reductions during a number of cycles, and showed considerably more hysteresis than films formed by surfactant from d-7 or d1. The low stability of films formed by surfactant obtained at the peak of HDM allergy also translated into the considerably higher maximum tension reached during the expansion phases (<xref ref-type="fig" rid="f6">
<bold>Figures&#xa0;6K, N</bold>
</xref>). Surfactant from d13 had fully restored dynamic isotherms and functional parameters, since in all cases films reached very low tensions (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6L</bold>
</xref>), with less than 20% area reduction (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6M</bold>
</xref>), while maintaining maximal tensions at the end of expansion (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6N</bold>
</xref>), that did not substantially differ from the equilibrium values produced at the end of the adsorption stage, along the 20 compression-expansion cycles applied.</p>
<p>These results revealed that surfactant obtained from mice during the peak of HDM allergy displayed a significant level of inactivation, characterized by slower interfacial adsorption and a reduced efficiency to attain and sustain very low surface tensions, raising the risk of alveolar collapse. Interestingly, during the resolution of the allergic reaction, the biophysical properties of surfactant were fully restored, as demonstrated by their high efficiency to form surface-active films maintaining very low surface tensions during breathing-like compression-expansion dynamics.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>AM&#xd8;s belong to the family of tissue-resident macrophages (resM&#xd8;s), that share the expression of core lineage related genes determined during embryonic life, but acquire tissue-specific features dictated by tissue specific microenvironmental signals (<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B20">20</xref>).</p>
<p>resM&#xd8;s present at birth are of embryonic origin, since they derive from yolk sac macrophages and fetal liver monocytes, these two precursor populations contributing differentially to resM&#xd8; subsets depending on their location (<xref ref-type="bibr" rid="B21">21</xref>). Embryonic resM&#xd8;s self-maintain in the adult mice, but appear to be gradually, yet partially, replaced by adult monocyte-derived resM&#xd8;s in the steady state, except for microglial, Langerhans and Kupffer cells (<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B22">22</xref>). In addition, recent experimental evidence supports that during infection, inflammation, or tissue damage, new resM&#xd8;s, including AM&#xd8;s, can be generated from adult BM monocytes (<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B22">22</xref>).</p>
<p>Our results demonstrate that HDM-induced allergy caused a massive disappearance of original embryonic AM&#xd8;s, that were replaced a new population of monocyte-derived AM&#xd8;s through an intermediate, intra-alveolar, pre-AM&#xd8; stage, as demonstrated by monocyte transfer experiments, assessment of intra-alveolarly-located cells, and analysis of AM&#xd8; regeneration in <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic> chimeric mice. The monocyte to AM&#xd8; transition, involved a pre-AM&#xd8; stage, and was paralleled by the translocation into the alveolar space, acquisition of high levels of autofluorescence, upregulation of Siglec-F and CD206 and inactivation of CX3CR1 promoter, leading to CX3CR1 downregulation, as summarized in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure&#xa0;2</bold>
</xref>. We speculated that a fraction of monocytes recruited to a non-alveolar compartment, such as the iBALT, maintained CX3CR1 promoter activity and YFP locus rearrangement during their differentiation into lung mature moCs, that would participate in lung allergic inflammation, as reported (<xref ref-type="bibr" rid="B17">17</xref>). In contrast, new-AM&#xd8;s would derive from monocytes recruited to an alveolar microenvironment, that would induce shut off monocyte CX3CR1 promoter, and drive monocyte differentiation into AM&#xd8;s.</p>
<p>To our knowledge, AM&#xd8; disappearance, and long-term replacement of original AM&#xd8;s by monocyte-derived AM&#xd8;s, during airway allergy, described in the present study, were not previously reported. Interestingly replacement of embryonic AM&#xd8;s by adult BM-derived AM&#xd8;s has been reported during lung viral infections (<xref ref-type="bibr" rid="B23">23</xref>&#x2013;<xref ref-type="bibr" rid="B26">26</xref>) or bleomycin-induced lung fibrosis (<xref ref-type="bibr" rid="B25">25</xref>), although data on the origin, degree of replacement and persistence of the newly-formed AM&#xd8; population remain controversial. During influenza virus infection, new-AM&#xd8;s were proposed to derive either from non-monocytic BM precursors (<xref ref-type="bibr" rid="B23">23</xref>) or from monocytes (<xref ref-type="bibr" rid="B25">25</xref>). New-AM&#xd8;s were proposed, but not demonstrated, to be monocyte-derived, during herpes virus infection (<xref ref-type="bibr" rid="B26">26</xref>) or experimental fibrosis (<xref ref-type="bibr" rid="B25">25</xref>). Besides, our results demonstrate that new monocyte-derived AM&#xd8;s persisted at least three months after the induction of allergy. In contrast, during influenza virus infection, newly-formed monocyte-derived AM&#xd8;s were claimed to be replaced in the long term by self-renewal the original embryonic population (<xref ref-type="bibr" rid="B23">23</xref>). After influenza virus infection or bleomycin-induced fibrosis, reported to cause a partial destruction of AM&#xd8;s, new-AM&#xd8;s coexisted in the long term with the remaining original AM&#xd8;s (<xref ref-type="bibr" rid="B25">25</xref>). Interestingly, monocyte-derived AM&#xd8;s, induced by influenza A infection, were recently demonstrated to persist at least 2 months after infection, and confer prolonged protection from <italic>Streptococcus pneumoniae</italic> infection due to increased production of IL-6 (<xref ref-type="bibr" rid="B27">27</xref>). In line with this study, recent experimental evidence has confirmed the concept that new AM&#xd8;s formed during lung infectious or inflammatory processes develop from Ly6C<sup>high</sup> monocytes recruited in a CCR2-dependent manner (<xref ref-type="bibr" rid="B28">28</xref>).</p>
<p>HDM allergy caused a profound alveolar disorganization involving AM&#xd8; death, pneumocyte hypertrophy and alterations in surfactant protein composition and biophysical properties. Dysfunction of alveolar system caused by allergic reactions was not previously reported. Nevertheless, AT2 cell hypertrophy was described in transgenic mice overexpressing IL-13 (<xref ref-type="bibr" rid="B29">29</xref>), a key mediator of lung Th2 immune diseases, such as asthma and fibrosis, and in a murine model of pulmonary fibrosis caused by TGF-&#x3b2;1 overexpression (<xref ref-type="bibr" rid="B30">30</xref>).</p>
<p>The hydrophilic proteins SP-A and SP-D are involved in lung innate immunity and regulation of surfactant homeostasis (<xref ref-type="bibr" rid="B31">31</xref>). SP-A and SP-D enhanced IL-4/IL-13-dependent M2 macrophage activation, promoting lung repair during helminth infection (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B33">33</xref>). Therefore, the increased SP-A and SP-D levels at d8-d13 might contribute to lung tissue repair and alveolar reorganization during the resolution of HDM allergy. SP-B and SP-C hydrophobic surfactant proteins have a key role in the formation of the surface-active films at the air-liquid interface, required to reduce alveolar surface tension (<xref ref-type="bibr" rid="B3">3</xref>). Therefore, their low concentration at the peak of HDM allergy most likely contributed to the reduced efficiency of d5 surfactant to form surface-active films capable to maintain very low surface tensions, increasing the danger of alveolar collapse. Surfactant dysfunction was reported in murine models of lung infection (<xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B35">35</xref>), and in ARDS (<xref ref-type="bibr" rid="B36">36</xref>) and asthmatic patients (<xref ref-type="bibr" rid="B37">37</xref>). Reduced amounts of SP-B and SP-C were described during airway allergy induced by <italic>Aspergillus fumigatus</italic> (<xref ref-type="bibr" rid="B38">38</xref>), in animal models of fibrosis (<xref ref-type="bibr" rid="B30">30</xref>), and in idiopathic fibrosis patients (<xref ref-type="bibr" rid="B39">39</xref>). A significant reduction in SP-B was associated with surfactant dysfunction and deficient lung mechanics in a mouse model of fibrosis (<xref ref-type="bibr" rid="B30">30</xref>), and SP-B deficiency was reported to impair surfactant function, resulting in respiratory failure (<xref ref-type="bibr" rid="B40">40</xref>). These data further support that surfactant dysfunction caused by HDM allergy was linked to the reduction in the surfactant proteins SP-B and SP-C.</p>
<p>Recruited monocyte-derived AM&#xd8;s formed during inflammatory conditions have been claimed to retain the plasticity of monocytes, allowing them to adapt to the inflamed lung environment (<xref ref-type="bibr" rid="B28">28</xref>). Indeed, monocyte-derived AM&#xd8;s provided a more efficient protection against infection, but can be detrimental by releasing profibrotic growth factors and chemokines, that cause the development of chronic lung diseases, such as fibrosis and chronic obstructive pulmonary disease (COPD) (<xref ref-type="bibr" rid="B28">28</xref>). Alveolar organization and surfactant function were restored after the resolution of HDM allergy, reflecting that newly-formed monocyte-derived AM&#xd8;s are fully competent in maintaining surfactant recycling and function, and consequently alveolar homeostasis. However, whether these monocyte-derived AM&#xd8;s contribute to the development of the allergic reaction and/or to the airway remodeling during the resolution of HDM-allergy remains to be assessed.</p>
<p>On the other hand, since AM&#xd8; function and survival require a continuous and finely regulated physical and biochemical interaction with pneumocytes (<xref ref-type="bibr" rid="B41">41</xref>), AM&#xd8; death caused by HDM allergy might result from disrupted alveolar organization and surfactant disfunction. In this regard, it can be speculated that pneumocyte hypertrophy caused by HDM-allergy might alter the expression of cell surface receptors mediating pneumocyte-AM&#xd8; interactions, such as CD200 and CD47, and compromise Gap junction-mediated bi-directional metabolic communication between pneumocytes and AM&#xd8;s (<xref ref-type="bibr" rid="B42">42</xref>), that could ultimately lead to AM&#xd8; detachment from alveolar epithelial cells and AM&#xd8; death. On the other hand, in a mouse model of allergic asthma, HDM was reported to cause airway epithelial cell necroptosis, a process proposed to be mediated by the induction of death receptor ligands such as TNF and TRAIL (<xref ref-type="bibr" rid="B43">43</xref>). Moreover, intratracheal instillation of fine particles containing aluminum salts, causing chronic pulmonary inflammation, induced AM&#xd8; cell death by RIPK3-dependent necroptosis (<xref ref-type="bibr" rid="B44">44</xref>). Based on these reports, it can be speculated that AM&#xd8; death could also result from the induction of necroptosis during HDM-induced allergy. The mechanism by which AM&#xd8; die during airway allergy remains nevertheless to be defined.</p>
<p>In conclusion, our data support that the pathological disorders associated with allergic asthma not only result from bronchiolar inflammation, but additionally from a severe alveolar damage compromising surfactant function and an efficient gas exchange. These findings strongly suggest that new therapeutic strategies against asthma should be designed based on a combined treatment of bronchiolar inflammation and alveolar dysfunction.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>. Further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The animal study was reviewed and approved by CNB Animal Care Committee (protocol 312/14).</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>CaA designed the research, analyzed the data and wrote the manuscript. ML-B designed the research, performed experiments, analyzed the data and helped in preparing the manuscript. LF-L performed the majority of the experiments and analyzed the data. CG, ME, NA-L, LV, AV-P, LG-C, JD-A, GC and AH performed experiments. CC, BG-F and CM-F performed BAL biochemical analyses. JP-G and ChA analyzed the biophysical properties of lung surfactant. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the Ministerio de Econom&#xed;a y Competitividad (Grant SAF2015-69905 to CaA and Grant SAF2015-65307-R to CC), Ministerio de Ciencia e Innovaci&#xf3;n (Grants PGC2018-101899-B-100 and PID2021-122748OB-I00 to CaA, Grants RTI2018-094355&#x2010;B&#x2010;I00 and PID2021-123044OB-I00 to CC and Grant PID2021-124932OB-I00 to JP-G), and Comunidad de Madrid (Grant P2018/NMT4389 to JP-G).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We thank H. Hammad and M. Guilliams for experimental advice, S. Jung for experimental advice and <italic>Cx3cr1</italic>
<sup>cre</sup>:<italic>R26-yfp</italic> BM, D. Sancho and L. Conejero for experimental help, the Electron Microscopy facility of the CNB for technical advice and processing of lung samples, M. Ferriz for help in preparing the manuscript.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fimmu.2023.1125984/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fimmu.2023.1125984/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.pdf" id="SM1" mimetype="application/pdf"/>
</sec>
<fn-group>
<title>Abbreviations</title>
<fn fn-type="abbr">
<p>AM&#xd8;s, alveolar macrophages; BAL, bronchoalveolar lavage; BM, bone marrow; B6, C57BL/6; CBS, captive bubble surfactometry; day, d; HDM, house dust mite; i.p., intraperitoneal; intraperitoneally; i.t., intratraqueal; intratraqueally; i.v., intravenous; intravenously; MHCII, MHC class-II; moCs, monocyte-derived cells; resM&#xd8;s, tissue resident macrophages.</p>
</fn>
</fn-group>
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