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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2023.1082144</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Genetic polymorphisms in immune- and inflammation-associated genes and their association with bovine mastitis resistance/susceptibility</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Khan</surname>
<given-names>Muhammad Zahoor</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1008597"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Jingjun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1917684"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname>
<given-names>Yulin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1787571"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Tianyu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname>
<given-names>Mei</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ullah</surname>
<given-names>Qudrat</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/513456"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Khan</surname>
<given-names>Ibrar Muhammad</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/946060"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Khan</surname>
<given-names>Adnan</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cao</surname>
<given-names>Zhijun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1237440"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Liu</surname>
<given-names>Shuai</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2114111"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Faculty of Veterinary and Animal Sciences, The University of Agriculture</institution>, <addr-line>Dera Ismail Khan</addr-line>, <country>Pakistan</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Anhui Province Key Laboratory of Embryo Development and Reproduction Regulation, Anhui Province Key Laboratory of Environmental Hormone and Reproduction, School of Biological and Food Engineering, Fuyang Normal University</institution>, <addr-line>Fuyang</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences</institution>, <addr-line>Shenzhen</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Jagadeesh Bayry, Indian Institute of Technology Palakkad, India</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Kecheng Zhu, South China Sea Fisheries Research Institute (CAFS), China; Bianca Castiglioni, National Research Council (CNR), Italy</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Shuai Liu, <email xlink:href="mailto:liushuaicau@cau.edu.cn">liushuaicau@cau.edu.cn</email>
</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work and share first authorship</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Molecular Innate Immunity, a section of the journal Frontiers in Immunology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>23</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1082144</elocation-id>
<history>
<date date-type="received">
<day>27</day>
<month>10</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>06</day>
<month>01</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Khan, Wang, Ma, Chen, Ma, Ullah, Khan, Khan, Cao and Liu</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Khan, Wang, Ma, Chen, Ma, Ullah, Khan, Khan, Cao and Liu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Bovine mastitis, the inflammation of the mammary gland, is a contagious disease characterized by chemical and physical changes in milk and pathological changes in udder tissues. Depressed immunity and higher expression of inflammatory cytokines with an elevated milk somatic cell count can be observed during mastitis in dairy cattle. The use of somatic cell count (SCC) and somatic cell score (SCS) as correlated traits in the indirect selection of animals against mastitis resistance is in progress globally. Traditional breeding for mastitis resistance seems difficult because of the low heritability (0.10-0.16) of SCC/SCS and clinical mastitis. Thus, genetic-marker-selective breeding to improve host genetics has attracted considerable attention worldwide. Moreover, genomic selection has been found to be an effective and fast method of screening for dairy cattle that are genetically resistant and susceptible to mastitis at a very early age. The current review discusses and summarizes the candidate gene approach using polymorphisms in immune- and inflammation-linked genes (<italic>CD4, CD14, CD46, TRAPPC9, JAK2, Tf, Lf, TLRs, CXCL8, CXCR1, CXCR2, C4A, C5, MASP2, MBL1, MBL2, LBP</italic>, NCF1, NCF4, MASP2, A2M, and CLU, etc.) and their related signaling pathways (<italic>Staphylococcus aureus</italic> infection signaling, Toll-like receptor signaling, NF-kappa B signaling pathway, Cytokine-cytokine receptor, and Complement and coagulation cascades, etc.) associated with mastitis resistance and susceptibility phenotypic traits (IL-6, interferon-gamma (IFN-&#x3b3;), IL17, IL8, SCS, and SCC) in dairy cattle.</p>
</abstract>
<kwd-group>
<kwd>bovine mastitis</kwd>
<kwd>immunity and inflammation</kwd>
<kwd>genetic markers</kwd>
<kwd>polymorphisms</kwd>
<kwd>SCS</kwd>
<kwd>SCC</kwd>
<kwd>inflammatory cytokines</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="199"/>
<page-count count="18"/>
<word-count count="7345"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1">
<label>1</label>
<title>Background</title>
<p>Normally, the mammary gland performs three functions, including the provision of nutrition to offspring in the form of milk, the transfer of immunity from mother to offspring through immunoglobulins in milk, and the provision of protection against microbes (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>). Bovine mastitis, the inflammation of mammary glands, occurs when the udder is exposed to any physical injury or pathogenic microorganisms (<xref ref-type="bibr" rid="B3">3</xref>). Bacterial pathogens, upon entry, compromise the immunity of the mammary gland and trigger the abnormal regulation of the immune system, followed by inflammatory changes, resulting in mastitis (<xref ref-type="bibr" rid="B4">4</xref>).</p>
<p>Based on clinical signs, mastitis can be divided into two types, i.e., clinical and sub-clinical mastitis (<xref ref-type="bibr" rid="B5">5</xref>&#x2013;<xref ref-type="bibr" rid="B8">8</xref>). Clinical mastitis is characterized by visible signs of inflammation in the udder and microbiological physical, and chemical changes in the milk (<xref ref-type="bibr" rid="B9">9</xref>&#x2013;<xref ref-type="bibr" rid="B11">11</xref>). <italic>Escherichia coli</italic> is one of the major bacteria responsible for acute or clinical mastitis, while subclinical mastitis is caused by the gram-positive <italic>Staphylococcus aureus</italic> (<xref ref-type="bibr" rid="B12">12</xref>&#x2013;<xref ref-type="bibr" rid="B14">14</xref>), which is characterized by a marked decrease in milk quantity and quality (<xref ref-type="bibr" rid="B15">15</xref>). The other signs of subclinical mastitis are the increase in milk SCC level, which shows the level of leucocytes and epithelial cells in milk (<xref ref-type="bibr" rid="B16">16</xref>). Elevated levels of leukocytes are the primary indicator of mammary infection.</p>
<p>An SCC of more than 200,000 cells/mL is an indication of mammary gland infections, while less than 100,000 cells/mL indicates that the cow is uninfected (<xref ref-type="bibr" rid="B17">17</xref>). Thus, increased levels of SCC are considered a sign of mastitis. The SCC and/or log-transformed SCC (somatic cell score, SCS) are widely targeted as early indicators of mastitis (<xref ref-type="bibr" rid="B3">3</xref>) because of a strong positive genetic correlation (0.6 to 0.90) between mastitis and milk SCC (<xref ref-type="bibr" rid="B18">18</xref>&#x2013;<xref ref-type="bibr" rid="B20">20</xref>). The SCC and SCS have comparatively higher heritability than mastitis (<xref ref-type="bibr" rid="B21">21</xref>) and are therefore widely targeted in mastitis control by selecting cows with low SCS/SCC (<xref ref-type="bibr" rid="B22">22</xref>). However, increased SCC in early lactation can signify the presence of intra-mammary infection, and in many countries, indirect selection against mastitis using milk SCC is practiced (<xref ref-type="bibr" rid="B23">23</xref>). However, in the early phases of infectivity, the neutrophil, including the level of inflammatory cytokines, increases more rapidly than the total SCC (<xref ref-type="bibr" rid="B24">24</xref>). Moreover, resistance to the pathogenesis of mastitis is a complicated biological mechanism involving various molecules, cells, and pathways (<xref ref-type="bibr" rid="B25">25</xref>). That&#x2019;s why, nowadays, people are more interested in the increasing cells and cytokine levels in milk and blood rather than just the overall SCC, which may show the status of udder health at an earlier stage (<xref ref-type="bibr" rid="B26">26</xref>).</p>
<p>The epithelial cells of the inner surface of the mammary gland play a key role in recognizing mastitis-causing pathogens by synthesizing toll-like receptors (TLR2 &amp; TLR4) (<xref ref-type="bibr" rid="B27">27</xref>, <xref ref-type="bibr" rid="B28">28</xref>). Upon activation, TLRs further regulate nuclear factor-&#x3ba;B, which translocates into the nucleus and causes the mediation of pro-inflammatory signaling molecules (tumor necrosis factor-&#x3b1; (TNF-&#x3b1;), IL-1&#x3b2; and IL-6, and IL-8) that are essential for the animal&#x2019;s local and systemic immune reactions (<xref ref-type="bibr" rid="B27">27</xref>, <xref ref-type="bibr" rid="B29">29</xref>&#x2013;<xref ref-type="bibr" rid="B31">31</xref>). It has been well-studied that serum cytokines, such as interferon, tumor necrosis factor, IL17, IL6, and IL4, have a key role in inflammatory circumstances, which suggests their possible role in bovine mastitis (<xref ref-type="bibr" rid="B32">32</xref>&#x2013;<xref ref-type="bibr" rid="B35">35</xref>). Furthermore, previous studies have also suggested that in addition to SCC and SCS, serum cytokines could also be considered indirect parameters in the control strategies against bovine mastitis (<xref ref-type="bibr" rid="B36">36</xref>&#x2013;<xref ref-type="bibr" rid="B38">38</xref>).</p>
<p>The control of mastitis using traditional selection methods is quite challenging due to the low heritability of indirect mastitis resistance phenotypic traits (SCC, SCS, and inflammatory cytokines) and host genetics (<xref ref-type="bibr" rid="B39">39</xref>). The use of milk SCC as a surrogate trait for raising mastitis resistance in cattle has achieved limited outcomes (<xref ref-type="bibr" rid="B36">36</xref>), thus, the information on molecular markers for mastitis susceptibility/resistance is valuable in identifying genetically mastitis-resistant cattle (<xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B41">41</xref>). Due to the limited and slow progress in improving udder health using conventional selection procedures with indirect traits, demand has increased for information on molecular markers to enhance host genetics against mastitis in cattle breeding (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B42">42</xref>).</p>
<p>Usually, two types of candidate gene approaches (direct and indirect) are used while looking for genetically mastitis-resistant cattle (<xref ref-type="bibr" rid="B43">43</xref>&#x2013;<xref ref-type="bibr" rid="B45">45</xref>). The first approach is the use of linked markers (indirect), which are markers that are closed to the gene or QTL that has a significant role in mastitis. The second is the use of functional or direct genetic markers, in which the polymorphisms in genes associated with variation in mastitis resistance phenotypic traits are targeted (<xref ref-type="bibr" rid="B43">43</xref>, <xref ref-type="bibr" rid="B46">46</xref>). It is well documented that many genes control mastitis, and all of them contribute considerably to either mastitis resistance or development, so, it is necessary to consider the combination of genes for mastitis resistance because some genes have little effect. It has been documented that the immune and inflammatory response to bacteria is usually regulated by inflammation- and immune-associated genes (<xref ref-type="bibr" rid="B47">47</xref>).</p>
<p>So far, several genetic polymorphisms in inflammation- and immune-related genes have been identified for their possible association with mastitis resistance phenotypic traits (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B37">37</xref>, <xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B41">41</xref>, <xref ref-type="bibr" rid="B46">46</xref>, <xref ref-type="bibr" rid="B48">48</xref>&#x2013;<xref ref-type="bibr" rid="B50">50</xref>). In the current review, we discuss all the polymorphisms in immune- and inflammation-associated genes that are linked to mastitis resistance phenotypic traits (SCC, SCS, IL-6, IL8, IL17, and IFN-gamma). Based on the current review, we suggest that all the highlighted SNPs of the genes discussed could be considered potential genetic markers for mastitis resistance in dairy cattle.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Methods for collection of literature studies</title>
<p>For this review, we used Google Scholar, Web of Science, and PubMed. Furthermore, we used NCBI to verify the information regarding the genes, such as the number of exons and chromosome location. We only considered data published in the English language and in SCI journals. In addition, we used data that was published between 2000 and 2022. Only the polymorphisms located in exonic regions, promoters, or 5 or 3 untranslated regions of genes were utilized in the current study. Finally, we used the online software, DAVID for biological signaling pathways. The keywords, such as SCS, SCC, inflammatory cytokines, immune- and inflammation-associated genes, and polymorphisms were considered while collecting literature for the current review.</p>
</sec>
<sec id="s3">
<label>3</label>
<title>Genetic polymorphisms of genes associated with mastitis resistance/susceptibility in dairy cattle</title>
<p>The detection of single nucleotide polymorphisms (SNPs) in genes regulating the mammary gland&#x2019;s innate immunity in response to pathogens has attracted considerable attention within the field of genetic markers in mastitis control research (<xref ref-type="bibr" rid="B51">51</xref>&#x2013;<xref ref-type="bibr" rid="B55">55</xref>). Several immune- and inflammation-associated genes and their polymorphisms have been discovered for their association with bovine mastitis susceptibility/resistance (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B56">56</xref>&#x2013;<xref ref-type="bibr" rid="B60">60</xref>). All the reported polymorphisms in immune- and inflammation-associated genes are summarized in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Polymorphisms in genes associated with bovine mastitis resistance phenotypic traits.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Gene</th>
<th valign="top" align="center">Chromosome Location and No of Exons</th>
<th valign="top" align="center">Polymorphisms</th>
<th valign="top" align="center">Location</th>
<th valign="top" align="center">Nucleotide change</th>
<th valign="top" align="center">Amino acid change</th>
<th valign="top" align="center">Biological Function/role in mastitis</th>
<th valign="top" align="center">Breed (region)</th>
<th valign="top" align="center">Microbes/<break/>Genetic resistance/<break/>susceptibility to mastitis</th>
<th valign="top" align="center">Authors</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<italic>C5</italic>
</td>
<td valign="top" align="left">Chr8<break/>41 Exons</td>
<td valign="top" align="left">C5C1(112318429)<break/>C5C-2 (112314094)<break/>C5C-3 (112308481)<break/>C5C-4 (112277923)<break/>C5C-5 (112260121)<break/>C5C-6 (112250562)<break/>C5C-7 (112240847)</td>
<td valign="top" align="left">Exon-6<break/>Exon-8<break/>Exon-10<break/>Exon-24<break/>Exon-29<break/>Exon-34<break/>Exon-40</td>
<td valign="top" align="left">G&gt;A<break/>C&gt;T<break/>G&gt;A<break/>G&gt;A<break/>G&gt;A<break/>G&gt;A<break/>A&gt;G</td>
<td valign="top" align="left">tyr &gt; tyr<break/>val&gt;ile<break/>thr&gt; thr<break/>ser&gt; ser<break/>thr&gt;Ile<break/>thr&gt; thr<break/>gly&gt;gly</td>
<td valign="top" align="left">Regulates innate immunity in mammary gland against microbial infection,<break/>Associated with low milk SCC and SCS</td>
<td valign="top" align="left">Baladi-Frisian<break/>Crossbred<break/>(Egypt)</td>
<td valign="top" align="left">Naturally resistance to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B25">25</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Complement component 4 (C4A)</italic>
</td>
<td valign="top" align="left">Chr23<break/>41 Exons</td>
<td valign="top" align="left">g.2994 A&gt;G<break/>rs132741478</td>
<td valign="top" align="left">Exon 10</td>
<td valign="top" align="left">A&gt;G</td>
<td valign="top" align="left">Methionine and valine at position a362</td>
<td valign="top" align="left">Showed a link with milk SCS and mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cattle<break/>(China)</td>
<td valign="top" align="left">
<italic>S. aureus</italic>
</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B55">55</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>BRCA1</italic>
</td>
<td valign="top" align="left">Chr19,<break/>23 Exons</td>
<td valign="top" align="left">c.46126<break/>c.24976<break/>c.25440<break/>c.26198<break/>c.27229<break/>c.27234</td>
<td valign="top" align="left">Exon-13<break/>Exon-9<break/>Exon-9<break/>Exon-9<break/>Exon-9<break/>Exon-9</td>
<td valign="top" align="left">G&gt;T<break/>T&gt;C<break/>A&gt;C<break/>C&gt;T<break/>A&gt;T<break/>A&gt;G</td>
<td valign="top" align="left">Tyr&#x2192;Asp<break/>Phe&#x2192;Ser<break/>Cys&#x2192;Arg<break/>Synonymous<break/>Ile&#x2192;Lys<break/>Glu&#x2192;Lys</td>
<td valign="top" align="left">Showed a strong relationship with inflammatory changes and low level of milk SCS</td>
<td valign="top" align="left">Holstein,<break/>Sanhe<break/>and Simmental cows<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B61">61</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>BRAC1</italic>
</td>
<td valign="top" align="left">Chr19,<break/>23 Exons</td>
<td valign="top" align="left">c.28300<break/>c.25025</td>
<td valign="top" align="left">Exon-9<break/>Exon-9</td>
<td valign="top" align="left">C&gt;A<break/>T&gt;A</td>
<td valign="top" align="left">Thr&#x2192;Pro<break/>Synonymous</td>
<td valign="top" align="left">Showed a strong relationship with inflammatory changes and low level of milk SCS</td>
<td valign="top" align="left">Holstein,<break/>Sanhe<break/>and Simmental cows<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B62">62</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>BRAC1</italic>
</td>
<td valign="top" align="left">Chr19,<break/>23 Exons</td>
<td valign="top" align="left">G43737229T<break/>G43761121A</td>
<td valign="top" align="left">Exon 13<break/>Exon 13</td>
<td valign="top" align="left">G&gt;T<break/>G&gt;A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Functional role in DNA damage repair<break/>Coordinates several pathways, with an essential function in cell cycle regulation, protein ubiquitination, transcriptional regulation, and other vital pathways to maintain genome stability<break/>Associated with low milk SCC and mastitis</td>
<td valign="top" align="left">Sahiwal breed (India)<break/>Chinese Holstein cattle<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B55">55</xref>
<break/>
<xref ref-type="bibr" rid="B63">63</xref>, <xref ref-type="bibr" rid="B64">64</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL1</italic>
</td>
<td valign="top" align="left">Chr26<break/>5 Exons</td>
<td valign="top" align="left">c.2534<break/>c.2569</td>
<td valign="top" align="left">Exon-2<break/>Exon-2</td>
<td valign="top" align="left">G&gt;A<break/>T&gt;C</td>
<td valign="top" align="left">Val&#x2192;Ile</td>
<td valign="top" align="left">Indicates a strong link with low milk SCS,<break/>Activates an immune response before the induction of antigen-specific immunity</td>
<td valign="top" align="left">Holstein,<break/>Sanhe<break/>and Simmental cows<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B19">19</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL1</italic>
</td>
<td valign="top" align="left">Chr26<break/>5 Exons</td>
<td valign="top" align="left">SNP-g.2651<break/>ss172800394</td>
<td valign="top" align="left">Exon-2</td>
<td valign="top" align="left">G&gt;A</td>
<td valign="top" align="left">Val&#x2192;Ile</td>
<td valign="top" align="left">Positively correlated with milk SCS in Chinese Holstein, Luxi Yellow, and Bohai Black</td>
<td valign="top" align="left">Chinese Holstein, Luxi Yellow, and Bohai Black (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B65">65</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL1</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">g.2651G&gt;A<break/>g.&#x2212;1330G&gt;A</td>
<td valign="top" align="left">Exon-2<break/>Exon-2</td>
<td valign="top" align="left">G&gt;A<break/>G&gt;A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated with milk SCC in Chinese Holsteins</td>
<td valign="top" align="left">Chinese Holstein cows<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B66">66</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL1</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">c.2534</td>
<td valign="top" align="left">Exon-2</td>
<td valign="top" align="left">G &gt; A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated with lower milk SCS in Sahiwal and Hardhenu cattle</td>
<td valign="top" align="left">Sahiwal breed (India)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B67">67</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL1</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">g.2686T&gt;C g.2651G&gt;A</td>
<td valign="top" align="left">Exon-2<break/>Exon-2</td>
<td valign="top" align="left">T&gt;C<break/>G&gt;A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated with lower milk SCS in Sahiwal and Hariana cattle</td>
<td valign="top" align="left">Hariana and Sahiwal cattle<break/>(India)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B68">68</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL2</italic>
</td>
<td valign="top" align="left">Chr26<break/>5 Exons</td>
<td valign="top" align="left">g.201(ss487448874)<break/>g.234(ss487448878)<break/>g.235(ss487448881)<break/>g.244(ss487448884)</td>
<td valign="top" align="left">Exon-1</td>
<td valign="top" align="left">G &gt; A<break/>C &gt; A<break/>G &gt; A<break/>T &gt; C</td>
<td valign="top" align="left">Arg &gt; Gln<break/>Pro &gt; Gln<break/>Pro &gt; Gln<break/>Asn &gt; Asn</td>
<td valign="top" align="left">Associated with milk SCS,<break/>Activates an immune response before the induction of antigen-specific immunity<break/>The low expression may expose the animal to mammary <italic>S.aures</italic> infection<break/>Mutation Pro &gt; Gln in MBL with increased NF-&#x3ba;B expression</td>
<td valign="top" align="left">Chinese Holstein cows<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B69">69</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>MBL2</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">g.1164<break/>g.1197</td>
<td valign="top" align="left">Exon-1<break/>Exon-1</td>
<td valign="top" align="left">G &gt;A<break/>C&gt;A</td>
<td valign="top" align="left">Arg&gt; glu<break/>Pro&gt; glu</td>
<td valign="top" align="left">Linked with lowest milk SCS and mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cows<break/>(China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B70">70</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>TLR4</italic>
</td>
<td valign="top" align="left">Chr8,<break/>4 exons</td>
<td valign="top" align="left">SNP-2021<break/>rs8193069</td>
<td valign="top" align="left"/>
<td valign="top" align="left">T&gt;C</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Correlated with milk SCS<break/>Associated with the regulation of inflammation and immunity by using JAK-STAT signaling upon <italic>S.aureus</italic> infection</td>
<td valign="top" align="left">Jersey and Jersey x Holstein-Friesian crossbreds<break/>(Ireland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B52">52</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>TLR4</italic>
</td>
<td valign="top" align="left">Chr8,<break/>4 exons</td>
<td valign="top" align="left">rs8193060</td>
<td valign="top" align="left">Exon 3</td>
<td valign="top" align="left">A&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Positively linked with lowest milk SCC in Brazilian Holsteins</td>
<td valign="top" align="left">Brazilian Holsteins (Brazil)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B71">71</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>TLR2</italic>
</td>
<td valign="top" align="left">Chr17<break/>6 exons</td>
<td valign="top" align="left">T385 G</td>
<td valign="top" align="left">Exon2</td>
<td valign="top" align="left">T&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Linked with high milk SCS and mastitis susceptibility</td>
<td valign="top" align="left">Holstein, Simmental, and Sanhe cattle</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B72">72</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CXCR1</italic>
</td>
<td valign="top" align="left">Chr2<break/>3 Exons</td>
<td valign="top" align="left">SNP-777 (ss110617059)<break/>SNP-1830<break/>SNP-1768<break/>SNP-344,<break/>SNP-783</td>
<td valign="top" align="left">5&#x2019; upstream and coding region</td>
<td valign="top" align="left">C&gt;G<break/>A&gt;G<break/>T&gt;A<break/>T&gt;C<break/>C&gt;A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated with milk SCS<break/>Also plays a key role in innate immunity</td>
<td valign="top" align="left">Jersey and Jersey x Holstein-Friesian crossbreds<break/>(Ireland)<break/>Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B52">52</xref>,<break/>
<xref ref-type="bibr" rid="B73">73</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CD4</italic>
</td>
<td valign="top" align="left">Chr5<break/>11 Exons</td>
<td valign="top" align="left">104010752C/T</td>
<td valign="top" align="left">Promoter region</td>
<td valign="top" align="left">C&gt;T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Showed association with lower milk SCS and higher levels of IL6 and IFN-&#x3b3; and mastitis susceptibility in dairy cattle</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B33">33</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CD14</italic>
</td>
<td valign="top" align="left">Chr7<break/>2 Exons</td>
<td valign="top" align="left">SNP-1908<break/>(ss5108627)</td>
<td valign="top" align="left"/>
<td valign="top" align="left">A&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Effect on the level of milk SCS and mastitis susceptibility in dairy cattle</td>
<td valign="top" align="left">Jersey and Jersey x Holstein-Friesian crossbreds<break/>(Ireland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B52">52</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CD14</italic>
</td>
<td valign="top" align="left">Chr7<break/>11 Exons</td>
<td valign="top" align="left">g.528<break/>g.612<break/>g.1022</td>
<td valign="top" align="left">Exon 2<break/>Exon2<break/>Exon2</td>
<td valign="top" align="left">A/C<break/>A/G<break/>A/G</td>
<td valign="top" align="left">(147Ser&#x2192;Arg)<break/>75Asn&#x2192;Asp<break/>synonymous mutation</td>
<td valign="top" align="left">Associated with mastitis morbidity</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Mastitic cows</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B74">74</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CD46</italic>
</td>
<td valign="top" align="left">Chr16<break/>17 Exons</td>
<td valign="top" align="left">(c. 1033 + 2184)</td>
<td valign="top" align="left">Exon 8</td>
<td valign="top" align="left">C&gt;T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Plays a central role in the risk of mastitis caused by Streptococcus in dairy cows by using the mechanism of an alternative splicing<break/>CD4 controls infection by Streptococcus by activating cell autophagy</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">
<italic>Streptococcus</italic>
</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B75">75</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CARD15</italic>
</td>
<td valign="top" align="left">Chr18<break/>13 Exons</td>
<td valign="top" align="left">SNP-3168<break/>(rs43710288)</td>
<td valign="top" align="left">Exon 2</td>
<td valign="top" align="left">A&gt;T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Significantly regulates innate immunity and shows link with milk SCS</td>
<td valign="top" align="left">Jersey and Jersey x Holstein-Friesian crossbreds<break/>(Ireland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B52">52</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>IL8</italic>
</td>
<td valign="top" align="left">Chr6,<break/>4 exons</td>
<td valign="top" align="left">SNP-182<break/>(rs43707839)</td>
<td valign="top" align="left"/>
<td valign="top" align="left">A&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated with milk SCS</td>
<td valign="top" align="left">Jersey and Jersey x Holstein-Friesian crossbreds<break/>(Ireland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B52">52</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>NCF4</italic>
</td>
<td valign="top" align="left">Chr5, 9 exons</td>
<td valign="top" align="left">SNP g.18475</td>
<td valign="top" align="left">3&#x2032;untranslated region(3&#x2032;UTR)</td>
<td valign="top" align="left">A&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Significantly regulates the immune system against pathogens<break/>Associated with Mastitis resistance in dairy cows</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B76">76</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>NCF4</italic>
</td>
<td valign="top" align="left">Chr5, 9 exons</td>
<td valign="top" align="left">SNP g.18174</td>
<td valign="top" align="left">Exon 9</td>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="left">Significantly regulates the immune system against pathogens<break/>Associated with higher milk SCS and increased risk of mastitis in cows</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B77">77</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Bovine lactoferrin</italic>
</td>
<td valign="top" align="left">Chr22 and 19 exons</td>
<td valign="top" align="left">SNP &#x2212;190</td>
<td valign="top" align="left">Promoter region</td>
<td valign="top" align="left">A&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Show strong link with higher milk SCS</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B78">78</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Transferrin (Tf)</italic>
</td>
<td valign="top" align="left">Chr1<break/>17 Exons</td>
<td valign="top" align="left">SNP g.13942</td>
<td valign="top" align="left">Exon 8</td>
<td valign="top" align="left">T&gt;C</td>
<td valign="top" align="left">Synonymous</td>
<td valign="top" align="left">Linked with lower milk SCS in Chinese Holstein, Luxi Yellow, and Bohai Black</td>
<td valign="top" align="left">Chinese Holstein, Luxi Yellow, and Bohai Black</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B79">79</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>CACNA2D1</italic>
</td>
<td valign="top" align="left">Chr4<break/>42 Exons</td>
<td valign="top" align="left">g.38819398<break/>A526745G</td>
<td valign="top" align="left">Exon 18<break/>Exon 24</td>
<td valign="top" align="left">G &gt; A<break/>G &gt; A</td>
<td valign="top" align="left">Asp&#x2192; Gly</td>
<td valign="top" align="left">Correlated with lower milk SCS and mastitis resistance</td>
<td valign="top" align="left">HF X Sahiwal<break/>(India)<break/>Sahiwal and Karan Fries cattle<break/>(India)<break/>Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B80">80</xref>&#x2013;<xref ref-type="bibr" rid="B82">82</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>BMAP-28, MASP-2</italic>
</td>
<td valign="top" align="left">Chr22<break/>4 Exons</td>
<td valign="top" align="left">G553A<break/>C-86G</td>
<td valign="top" align="left">Exon 2<break/>Exon 2</td>
<td valign="top" align="left">G &gt; A</td>
<td valign="top" align="left">Gly&#x2192;Ser<break/>synonymous</td>
<td valign="top" align="left">Significantly proportional with lower milk SCS and mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B83">83</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>IL8</italic>
</td>
<td valign="top" align="left">Chr6,<break/>4 exons</td>
<td valign="top" align="left">SNP -105G&gt;A<break/>SNP -A(-180)G</td>
<td valign="top" align="left">5&#x2019; upstream<break/>5&#x2019; upstream</td>
<td valign="top" align="left">G &gt; A<break/>G &gt; A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated with lower milk SCS and mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B84">84</xref>, <xref ref-type="bibr" rid="B85">85</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>NF-&#x3ba;B</italic> signaling genes<break/>
<italic>Rel</italic>
<break/>
<italic>p100</italic>
<break/>
<italic>NFKBIZ</italic>
</td>
<td valign="top" align="left">Chr11<break/>Chr26<break/>Chr1</td>
<td valign="top" align="left">g. 536<break/>g. 94<break/>g.21</td>
<td valign="top" align="left">Exon 10<break/>Exon 20<break/>Exon 5</td>
<td valign="top" align="left">C&gt;T<break/>G&gt;A<break/>C&gt;T</td>
<td valign="top" align="left">Pro511Ser<break/>Arg799Arg<break/>Pro152Ser</td>
<td valign="top" align="left">Associated with the regulation of inflammatory cytokines and suppression of immunity<break/>Show link with lower milk SCS and mastitis susceptibility in Chinese Holstein cows</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B86">86</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>LBP</italic>
</td>
<td valign="top" align="left">Chr13<break/>15 exons</td>
<td valign="top" align="left">g.-81<break/>g.11<break/>g.68<break/>g.3034<break/>g.3040<break/>g.3056<break/>g.4619<break/>g.19975</td>
<td valign="top" align="left">Promoter<break/>core region<break/>Exon1<break/>Exon1<break/>Exon2<break/>Exon2<break/>Exon2<break/>Exon3<break/>Exon8</td>
<td valign="top" align="left">C&gt;T<break/>T &gt;C<break/>G&gt;C<break/>G&gt;A<break/>A&gt;G<break/>T&gt;C<break/>G&gt;A<break/>G&gt;A</td>
<td valign="top" align="left">4 Leu&#x2192; Ser<break/>23Gly &#x2192;Ala<break/>36Asp&#x2192;Asn<break/>38Asn&#x2192;Asp<break/>43Ile &#x2192;Thr<break/>67Ala &#x2192;Thr<break/>282Val&#x2192;Met</td>
<td valign="top" align="left">Associated with lower milk SCS and susceptibility to clinical mastitis in Chinese Holstein cows</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B87">87</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>LAP3</italic>
</td>
<td valign="top" align="left">Chr16<break/>13 Exons</td>
<td valign="top" align="left">rs41255599<break/>rs110839532<break/>g.24904</td>
<td valign="top" align="left">Exon13<break/>Exon13<break/>Exon13</td>
<td valign="top" align="left">C&gt;T<break/>G&gt;T<break/>G&gt;C</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Enhances immunity and shows a positive relationship with clinical mastitis in dairy cattle</td>
<td valign="top" align="left">Sahiwal and Karan Fries cattle<break/>(India)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B88">88</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>LAP3</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">T56C</td>
<td valign="top" align="left">Exon 12</td>
<td valign="top" align="left">T&gt;C</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Significantly correlated with higher milk SCC and susceptibility to mastitis in dairy cattle</td>
<td valign="top" align="left">Jersey cows<break/>(Poland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B89">89</xref>, <xref ref-type="bibr" rid="B90">90</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>FAM13A1</italic>
<break/>
<italic>ABCG2</italic>
<break/>
<italic>OPN</italic>
</td>
<td valign="top" align="left">Chr6<break/>29 Exons<break/>Chr6<break/>23 Exons<break/>Chr6<break/>10 Exons</td>
<td valign="top" align="left">C28A<break/>A86C<break/>G391T</td>
<td valign="top" align="left">Exon 12<break/>Exon 14<break/>Exon 10</td>
<td valign="top" align="left">C&gt;A<break/>A&gt;C<break/>G&gt;T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Regulates the higher level of milk SCC and susceptibility to mastitis in dairy cattle</td>
<td valign="top" align="left">Jersey cows<break/>(Poland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B89">89</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>IL17</italic>
</td>
<td valign="top" align="left">Chr23<break/>3 Exons</td>
<td valign="top" align="left">rs68268284</td>
<td valign="top" align="left">Exon 2</td>
<td valign="top" align="left">T&gt;C</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Linked with higher milk SCS and susceptibility to mastitis in dairy cattle</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B91">91</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>PGLYRP1</italic>
</td>
<td valign="top" align="left">Chr18<break/>3 Exons</td>
<td valign="top" align="left">rs68268284</td>
<td valign="top" align="left">Exon 1</td>
<td valign="top" align="left">T&gt;C</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Linked with lower milk SCS and mastitis resistance</td>
<td valign="top" align="left">Holstein cows<break/>(Poland)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B92">92</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Clusterin (CLU)</italic>
</td>
<td valign="top" align="left">Chr8<break/>11 Exons</td>
<td valign="top" align="left">G+15781A<break/>C-994T</td>
<td valign="top" align="left">Exon 17<break/>5&#x2032;-UTR</td>
<td valign="top" align="left">G&gt;T<break/>C&gt;T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Controls the level of milk SCS and creates resistance against mastitis</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B93">93</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>ATP1A1</italic>
</td>
<td valign="top" align="left">Chr3<break/>23 Exons</td>
<td valign="top" align="left">c-15,739A</td>
<td valign="top" align="left">Exon 17</td>
<td valign="top" align="left">C&gt;A</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Revealed a significant link with lower milk SCS and mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B58">58</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>PRMT2</italic>
</td>
<td valign="top" align="left">Chr1<break/>12 Exons</td>
<td valign="top" align="left">C24385T<break/>C24375T</td>
<td valign="top" align="left">3&#x2032;-UTR<break/>3&#x2032;-UTR</td>
<td valign="top" align="left">C/T<break/>C/T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Showed higher mRNA expression in infected mammary tissues<break/>Associated with mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cattle<break/>(China)</td>
<td valign="top" align="left">
<italic>S. aureus</italic>
</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B94">94</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>TRAPPC9</italic>
</td>
<td valign="top" align="left">Chr14<break/>30 Exons</td>
<td valign="top" align="left">rs110017379</td>
<td valign="top" align="left">Exon2</td>
<td valign="top" align="left">G&gt;T</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Linked with lower serum cytokines (IL-6, IFN-g) and higher milk SCC,<break/>Showed higher mRNA expression in infected mammary tissues<break/>Associated with mastitis susceptibility</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B33">33</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>JAK2</italic>
</td>
<td valign="top" align="left">Chr8<break/>26 exons</td>
<td valign="top" align="left">rs210148032<break/>rs110298451<break/>g.39645396</td>
<td valign="top" align="left">Exon16<break/>Exon20<break/>Exon20</td>
<td valign="top" align="left">C/T<break/>C/T<break/>A&gt;G</td>
<td valign="top" align="left">Lys &gt; Asx</td>
<td valign="top" align="left">Correlated with milk SCC IL4, IL-6, IL17, IFN-&#x3b3;, and mastitis susceptibility</td>
<td valign="top" align="left">Chinese Holstein cattle (China)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B32">32</xref>,<break/>
<xref ref-type="bibr" rid="B34">34</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>STAT5B</italic>
</td>
<td valign="top" align="left">Chr11<break/>21 exons</td>
<td valign="top" align="left">g.43660093</td>
<td valign="top" align="left">Exon16</td>
<td valign="top" align="left">T&gt;C</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Associated milk SCC, IL-6, and mastitis susceptibility</td>
<td valign="top" align="left">Chinese Holstein cows (China),<break/>Jersey (J) and Achai (A)</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B95">95</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>HMGB1</italic>
</td>
<td valign="top" align="left">Chr12<break/>5 exons</td>
<td valign="top" align="left">g. +2776 A &gt; G</td>
<td valign="top" align="left">3&#x2019;-UTR</td>
<td valign="top" align="left">A &gt; G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Linked with low milk SCC and mastitis resistance</td>
<td valign="top" align="left">Chinese Holstein cows (China)</td>
<td valign="top" align="left">Healthy and mastitic cows</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B96">96</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>TLR2</italic>
</td>
<td valign="top" align="left">Chr17<break/>6 exons</td>
<td valign="top" align="left">T385 G</td>
<td valign="top" align="left">Exon2</td>
<td valign="top" align="left">T&gt;G</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Linked with low milk SCS and mastitis susceptibility</td>
<td valign="top" align="left">Holstein, Simmental, and Sanhe cattle</td>
<td valign="top" align="left">Based on natural resistance/susceptibility to mastitis</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B72">72</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>(BMAP-28), Bovine myeloid antimicrobial peptide-28; (MASP-2), mannan-binding lectin-associated serine protease-2; NFKBIZ, NFKB inhibitor zeta; LAP3, Leucineaminopeptidase 3; FAM13A, family with sequence similarity 13 member A; ABCG2, ATP binding cassette subfamily G member 2; OPN, absence of pronuclei; (PGLYRP1), Peptidoglycan Recognition Protein 1 gene; ATP1A1, ATPase Na+/K+ transporting subunit alpha 1; PRMT2, Protein arginine N-methyltransferase 2; (HMGB1), High-mobility group box protein 1.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<sec id="s3_1">
<label>3.1</label>
<title>Innate immune-compartment-associated genes</title>
<sec id="s3_1_1">
<label>3.1.1</label>
<title>Bovine peptidoglycan recognition protein 1 (<italic>PGLYRP1</italic>)</title>
<p>Bovine peptidoglycan recognition protein 1 located on chromosome 18, having 3 exons, has a significant role in regulating inflammation, response to infection, and post-infection healing (<xref ref-type="bibr" rid="B97">97</xref>). Because <italic>PGLYRP1</italic> works as a receptor for murein peptidoglycans (PGN) of gram-positive and gram-negative bacteria, it is considered a key player in the activation of innate immunity (<xref ref-type="bibr" rid="B92">92</xref>). Considering its important role in immunity and inflammation, <italic>PGLYRP1</italic> has been widely targeted in bovine mastitis research (<xref ref-type="bibr" rid="B92">92</xref>, <xref ref-type="bibr" rid="B97">97</xref>). A higher expression of PGLYRP1 has been documented in cows with mastitis (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B97">97</xref>&#x2013;<xref ref-type="bibr" rid="B99">99</xref>). Consequently, the polymorphisms (G + 102C, T -12G) in <italic>PGLYRP1</italic> and SNP-C+4867T in <italic>PGLYRP2</italic> in the exonic region showed an association with milk SCS in dairy cattle (<xref ref-type="bibr" rid="B100">100</xref>, <xref ref-type="bibr" rid="B101">101</xref>). Moreover, a study reported that the polymorphism rs68268284 at exon 1 of <italic>PGLYRP1</italic> correlated with milk SCC (<xref ref-type="bibr" rid="B92">92</xref>), as mentioned in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>.</p>
</sec>
<sec id="s3_1_2">
<label>3.1.2</label>
<title>Calcium channel, voltage-dependent, alpha-2/delta subunit 1 (<italic>CACNA2D1</italic>)</title>
<p>Calcium channel, voltage-dependent, alpha-2/delta subunit 1 residing on chromosome 4, containing 42 exons, is another key genetic signature with an important role in clinical mastitis. It has been documented that SNP-G519663A at exon 18 (<xref ref-type="bibr" rid="B80">80</xref>), SNP-G519663A, and SNP-A526745G at exon 24 in the bovine <italic>CACNA2D1</italic> gene were significantly linked with lower milk SCS levels and mastitis resistance in dairy cattle (<xref ref-type="bibr" rid="B82">82</xref>, <xref ref-type="bibr" rid="B102">102</xref>). Moreover, it has also been noticed that SNP G38819398A at exon 18 (<xref ref-type="bibr" rid="B81">81</xref>), variant-T38826986G at exon 19 (<xref ref-type="bibr" rid="B103">103</xref>), and SNP-C367284A of <italic>CACNA2D1</italic> (<xref ref-type="bibr" rid="B104">104</xref>) were positively linked with milk SCS in Sahiwal and Karan Fries. The above findings show that <italic>CACNA2D1</italic> could be a potential genetic marker against mastitis resistance in dairy cattle.</p>
</sec>
<sec id="s3_1_3">
<label>3.1.3</label>
<title>Mannose-binding lectin (<italic>MBL</italic>)</title>
<p>Mannose-binding lectin is a critical player belonging to the collectin protein family that attaches to a variety of microorganisms and regulates the innate immunity lectin-complement pathway (<xref ref-type="bibr" rid="B69">69</xref>). <italic>MBL-A</italic> and MBL-C proteins are encoded by the <italic>MBL1</italic> and <italic>MBL2</italic> genes respectively. The reduced level of <italic>MBL</italic> may expose dairy cattle to various infections, including mastitis (<xref ref-type="bibr" rid="B66">66</xref>). Similarly, a study reported a strong correlation of SNP g.2651G&gt;A in the <italic>MBL</italic> gene with milk SCS, suggesting its possible role in mastitis resistance (<xref ref-type="bibr" rid="B65">65</xref>). In addition, other studies have also reported the significant association of SNPs in the <italic>MBL</italic> with milk SCS, an essential phenotypic indicator of bovine mastitis (<xref ref-type="bibr" rid="B66">66</xref>, <xref ref-type="bibr" rid="B70">70</xref>).</p>
</sec>
<sec id="s3_1_4">
<label>3.1.4</label>
<title>Mannose-binding lectin-associated serine protease 2 (<italic>MASP2</italic>)</title>
<p>Mannose-binding lectin-associated serine protease 2 which is located on chromosome 16 and contains 11 exons, is considered the key protease of the complement system. The <italic>MASP2</italic> gene plays an important role in innate immunity and creates resistance to infections of the mammary gland (<xref ref-type="bibr" rid="B105">105</xref>) and is therefore widely studied for its link with mastitis in dairy cattle (<xref ref-type="bibr" rid="B83">83</xref>, <xref ref-type="bibr" rid="B105">105</xref>). The polymorphism G553A in <italic>MASP2</italic> was found to be associated with mastitis resistance and lower milk SCC in Chinese Holsteins (<xref ref-type="bibr" rid="B83">83</xref>). Similarly, another study also reported that the polymorphisms (g.14047A&#x2009;&gt;&#x2009;C, g.14248T&#x2009;&gt;&#x2009;C, and g.14391C&#x2009;&gt;&#x2009;T) in <italic>MASP2</italic> had a significant correlation with lower milk SCC and mastitis resistance in dairy cattle (<xref ref-type="bibr" rid="B105">105</xref>), as shown in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>.</p>
</sec>
<sec id="s3_1_5">
<label>3.1.5</label>
<title>Lactoferrin (<italic>Lf</italic>)</title>
<p>Lactoferrin is an important, iron-binding glycoprotein member of the serum-transferring protein family, which is produced by the mammary gland and immune cells and distributed in external secretions, such as milk, tears, and polymorphonuclear neutrophil (PMN) cells and plays a crucial role in eliminating bacterial load in certain organs. The Lf has several biological functions, including immunity and bacteriostatic activities, which protect the udder from pathogenic infections (<xref ref-type="bibr" rid="B106">106</xref>). A review article comprehensively highlighted the role of <italic>lactoferrin</italic> in bovine mastitis (<xref ref-type="bibr" rid="B107">107</xref>). The increased mRNA expression of <italic>Lf</italic> and the elevated level of SCC in the mammary gland with mastitis indicate their role in acute phase response in the mammary gland during mastitis (<xref ref-type="bibr" rid="B108">108</xref>). Similarly, another study reported a higher Lf expression during mammary gland infection (<xref ref-type="bibr" rid="B109">109</xref>). Recently, several reports have proven the association of genetic polymorphisms in the bovine Lf gene with mastitis susceptibility (<xref ref-type="bibr" rid="B53">53</xref>, <xref ref-type="bibr" rid="B110">110</xref>&#x2013;<xref ref-type="bibr" rid="B116">116</xref>). One study documented that SNPs (SNP &#x2212;190 G&gt;A, &#x2212;270 T &gt; C, and &#x2212;190 G &gt;A) in the bovine lactoferrin gene were associated with milk SCS. Furthermore, it has been demonstrated that a higher expression of this gene may render dairy cows susceptible to mastitis (<xref ref-type="bibr" rid="B78">78</xref>).</p>
</sec>
<sec id="s3_1_6">
<label>3.1.6</label>
<title>Transferrin (<italic>Tf</italic>)</title>
<p>Transferrin is a &#x3b2;-globulin protein involved in iron ion transportation and plays a significant role in the regulation of innate immunity against microbial pathogens and blocked pathogenic access to iron (<xref ref-type="bibr" rid="B117">117</xref>, <xref ref-type="bibr" rid="B118">118</xref>). Being a key player in immunity, <italic>Tf</italic> has been studied for its association with mastitis resistance in dairy cattle (<xref ref-type="bibr" rid="B79">79</xref>). In addition, it has been documented that cows with SNP g.13942T&gt;C in Tf show the lowest milk SCS level. Moreover, they noticed a higher expression of <italic>Tf</italic> in the mammary glands of cows with mastitis, which suggests its crucial role in mastitis resistance (<xref ref-type="bibr" rid="B79">79</xref>).</p>
</sec>
<sec id="s3_1_7">
<label>3.1.7</label>
<title>Neutrophil cytosolic factor 4 (<italic>NCF4</italic>)</title>
<p>Calcium channel, voltage-dependent, alpha-2/delta subunit 1 is located on bovine chromosome 5 and contains 9 exons. Being a key component of the nicotinamide dinucleotide phosphate (NADPH) oxidase complex, <italic>NCF4</italic> plays an important role in the regulation of biochemical pathways and innate immune responses against microbial infection (<xref ref-type="bibr" rid="B119">119</xref>). The role of the NCF4 has been well studied in bovine mastitis research (<xref ref-type="bibr" rid="B76">76</xref>, <xref ref-type="bibr" rid="B77">77</xref>). Ju et&#xa0;al. reported that the polymorphism g.18174 A&gt;G on exon 9 of NCF4 showed a noteworthy relationship with high milk SCC levels and is responsible for the mastitis susceptibility of Chinese Holsteins (<xref ref-type="bibr" rid="B77">77</xref>). Another study found an SNP on g.18475 A&gt;G in the 3&#x2032; UTR of <italic>NCF4</italic>, which was linked with higher levels of milk SCC, suggesting its critical role in mastitis susceptibility (<xref ref-type="bibr" rid="B76">76</xref>). It has been well established that, upon challenge with bacteria, the microRNAs (miRNAs) were significantly expressed in the mammary gland, which shows their role in the regulation of host immunity (<xref ref-type="bibr" rid="B120">120</xref>). Several studies have documented the role of miRNAs in bovine mastitis and host immune regulation against pathogenic infections (<xref ref-type="bibr" rid="B76">76</xref>, <xref ref-type="bibr" rid="B96">96</xref>, <xref ref-type="bibr" rid="B121">121</xref>&#x2013;<xref ref-type="bibr" rid="B125">125</xref>). Consequently, a study reported that the miRNAs-mRNA interaction significantly regulates the expression of NCF4, which is linked with mastitis susceptibility and host immunity (<xref ref-type="bibr" rid="B76">76</xref>). Similarly, the SNP g.10766 T&gt;C in <italic>NCF1</italic> caused the aberrant splice variant <italic>NCF1-TV1</italic> production, which showed an association with high milk SCS in dairy cattle (<xref ref-type="bibr" rid="B126">126</xref>).</p>
</sec>
<sec id="s3_1_8">
<label>3.1.8</label>
<title>Bovine Alpha-2-macroglobulin (<italic>A2M</italic>) gene</title>
<p>Bovine Alpha-2-macroglobulin gene has 38 exons and is located on chromosome 5. By binding with proteases, <italic>alpha-2-macroglobulin (A2M)</italic> in the plasma and tissues of vertebrates and invertebrates acts as a defense barrier against pathogens (<xref ref-type="bibr" rid="B127">127</xref>). Recently, a study briefly explored the role of the <italic>A2M</italic> gene in immunity, inflammation, and infectious diseases (<xref ref-type="bibr" rid="B128">128</xref>). As mastitis is characterized by immune depression followed by inflammatory changes, making it a key player in immunity and inflammation, <italic>A2M</italic> has been widely studied in mastitis susceptibility in dairy cattle research (<xref ref-type="bibr" rid="B127">127</xref>, <xref ref-type="bibr" rid="B129">129</xref>). The SNP c.3535A&gt; T at exon 29 of the <italic>A2M</italic> gene caused the aberrant splice variant <italic>A2M-AS4</italic> production, which exposes dairy cattle mastitis (<xref ref-type="bibr" rid="B127">127</xref>). The Bta-miR-2898 was found to be up-regulated in cows with mastitis when compared with healthy cows. It was experimentally proven that polymorphism at point c.4659_4661delC of the <italic>A2M</italic> gene significantly influences the target bta-miR-2898 binding affinity. This shows that it might be possible that <italic>A2M</italic> has a significant association with mastitis susceptibility (<xref ref-type="bibr" rid="B129">129</xref>).</p>
</sec>
<sec id="s3_1_9">
<label>3.1.9</label>
<title>Cluster of differentiation 4 (<italic>CD4</italic>) gene</title>
<p>During mastitis, the inflammatory cells are recruited to the site of infection, where T cells, particularly <italic>CD4</italic> cells, were predominantly observed (<xref ref-type="bibr" rid="B130">130</xref>). Polymorphisms in <italic>CD4</italic> and <italic>STAT5B</italic> genes and their link with mastitis resistance phenotypic traits have been well studied (<xref ref-type="bibr" rid="B49">49</xref>). The polymorphism in <italic>CD4</italic> at loci g.13598C&gt;T has been identified for its significant association with SCS, which is a crucial indicator of mastitis. Additionally, the study reported that although polymorphisms in <italic>STAT5B</italic> did not show any link with mastitis, when a combination analysis was conducted with <italic>CD4</italic> gene polymorphisms, it was noticed that the combination of both genes showed a considerable effect on SCS (<xref ref-type="bibr" rid="B49">49</xref>). In addition, a study has reported a significant association of polymorphisms at point T104010752C and C104028410T in <italic>CD4</italic> and <italic>LAG3</italic> genes, respectively, with milk SCC (<xref ref-type="bibr" rid="B131">131</xref>). Based on the published studies, it can be concluded that <italic>CD4</italic> might be a valuable addition to the genetic markers for mastitis resistance in dairy cattle.</p>
</sec>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Genes encoding pathogen recognition receptors</title>
<sec id="s3_2_1">
<label>3.2.1</label>
<title>Toll-like receptors</title>
<p>Toll-like receptors, the family of recognition patterns, are associated with the regulation of innate immunity (<xref ref-type="bibr" rid="B132">132</xref>, <xref ref-type="bibr" rid="B133">133</xref>). Recently, various reports have been published on the role of TLRs in mastitis (<xref ref-type="bibr" rid="B134">134</xref>&#x2013;<xref ref-type="bibr" rid="B141">141</xref>). The toll-like receptors on mammary epithelial cells show early expression during mammary infection because of interaction with microbial pathogens (<xref ref-type="bibr" rid="B142">142</xref>). Upon activation, TLR regulates the expression of several chemokines and pro-inflammatory cytokines, which further facilitate the recruitment of neutrophils and activate innate and acquired immune responses (<xref ref-type="bibr" rid="B53">53</xref>). The SNPs within the pattern recognition receptors (PRR) may alter the host response to pathogens and lead to either mastitis resistance or susceptibility (<xref ref-type="bibr" rid="B71">71</xref>).</p>
<p>Bovine <italic>TLR4</italic>, which is located on chromosome 8, contains 4 exons, and is a type I transmembrane protein and member of the TLR family, has been identified as a key pattern recognition receptor (PRR) (<xref ref-type="bibr" rid="B143">143</xref>). The <italic>TLR4</italic> regulates innate immune system cells when stimulated by pathogen-associated molecular patterns (PAMPs) of foreign microorganisms, including viruses, fungi, and bacteria (<xref ref-type="bibr" rid="B144">144</xref>). Furthermore, Wang et&#xa0;al. (<xref ref-type="bibr" rid="B143">143</xref>) reported that the LPS, which is considered an essential PAMPS, could be found in most gram-negative and some gram-positive bacteria that interact with <italic>TLR4</italic> in mammary epithelial cells, which is why the higher expression of <italic>TLR4</italic> has been noticed during mastitis in dairy cattle (<xref ref-type="bibr" rid="B143">143</xref>). A study reported that SNP- rs8193069 in the <italic>TLR4</italic> gene was significantly associated with higher milk SCC (<xref ref-type="bibr" rid="B145">145</xref>, <xref ref-type="bibr" rid="B146">146</xref>). Similarly, another study found that the SNP- 1,397-C-T at exon 3 of TLR4 correlated with milk SCS in Chinese Holstein, Sanhe cattle, and Chinese Simmental (<xref ref-type="bibr" rid="B145">145</xref>, <xref ref-type="bibr" rid="B147">147</xref>). Furthermore, Mesquita et&#xa0;al. (<xref ref-type="bibr" rid="B71">71</xref>) documented that SNP at point rs8193060 G&gt;A in <italic>TLR4</italic> was significantly associated with the lowest milk SCS level in Brazilian Holsteins. From the above studies, we concluded that <italic>TLR4</italic> has a critical role in mastitis development, and it might, therefore, be considered a potential genetic marker for mastitis resistance.</p>
<p>The polymorphism (SNP -79 T &gt; G) in bovine <italic>TLR1</italic> predisposes dairy cattle to mammary infection due to the excessive activation of NF-&#x3ba;B signaling and poor immune response to pathogens (<xref ref-type="bibr" rid="B148">148</xref>). Furthermore, it has been revealed that mutation in <italic>TLR1</italic> also influences the expression of <italic>CXCL8 (IL-8)</italic> (<xref ref-type="bibr" rid="B149">149</xref>), <italic>TLR2</italic>, and <italic>IL-6</italic> (<xref ref-type="bibr" rid="B34">34</xref>), and high expression of these genes has been reported in the mammary epithelial cells of cows with mastitis. Besides, <italic>TLR1</italic> can establish heterodimers with <italic>TLR2</italic> (<xref ref-type="bibr" rid="B150">150</xref>) to widen the recognized ligands. Pant et&#xa0;al. revealed that mutations in <italic>TLR2</italic> and caspase recruitment domain 15 (CARD15) are associated with milk SCS and increase the susceptibility of cattle to mastitis. <italic>TLR2</italic> and <italic>CARD15</italic> are key pattern recognition receptors that play an essential role in the stimulation of inflammatory and immune response (<xref ref-type="bibr" rid="B151">151</xref>, <xref ref-type="bibr" rid="B152">152</xref>). A study documented that SNP T385G at exon 2 in the <italic>TLR2</italic> gene is linked with high milk SCS and mastitis susceptibility (<xref ref-type="bibr" rid="B72">72</xref>).</p>
</sec>
<sec id="s3_2_2">
<label>3.2.2</label>
<title>Lipopolysaccharide-binding protein (<italic>LBP</italic>)</title>
<p>Lipopolysaccharide-binding protein is another critical gene that has a vital role to play in the innate immune recognition of gram-negative bacteria in dairy cattle. The gram-negative bacteria has been documented to have an essential role in mastitis (<xref ref-type="bibr" rid="B87">87</xref>). <italic>LBP</italic> is the critical protein that combines with LPS, a primary plotter from gram-negative bacteria with the ability to activate inflammation in animals. Furthermore, by binding with LPS, the LBP is presented to CD14 <sup>+</sup> cells, resulting in the regulation of the TLR4 pathway. The TLR4 pathway further activates the pro-inflammatory response caused by tumor necrosis factor-a (TNF-a), interleukin (IL) -1, or IL-6. In addition, with the help of the soluble form of <italic>CD14</italic>, the LPS-LBP complex also activates the CD14 cell inflammatory response, which shows that <italic>LBP</italic> could significantly contribute to blocking the inflammatory cascade before the release of inflammatory cytokines. Cheng et&#xa0;al. (<xref ref-type="bibr" rid="B87">87</xref>) reported that mutations in the <italic>LBP</italic> gene have a significant association with mastitis in dairy cattle, as shown in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>.</p>
</sec>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Cytokines encoded genes and their receptors associated with mastitis</title>
<p>The inflammatory cytokines and their associated genes have attracted considerable attention in mastitis research (<xref ref-type="bibr" rid="B38">38</xref>). Interleukin-8 receptor &#x3b1; (IL-8RA), coded by the chemokine receptor <italic>CXCR1</italic>, is located on the surface of neutrophil and connects the pro-inflammatory IL-8 with high affinity and is, therefore, targeted widely as a potential marker in mastitis control research (<xref ref-type="bibr" rid="B153">153</xref>). Due to the immunosuppressive nature of <italic>S. aureus-</italic>mastitis, IL8RA plays an important role in the control of bovine mastitis by enhancing immunity (<xref ref-type="bibr" rid="B154">154</xref>). <italic>IL8</italic>, also called CXC <italic>chemokine ligand 8</italic> (<italic>CXCL8</italic>), is located on chromosome 6 and has 4 exons. <italic>IL8</italic> is considered a potent mediator of inflammation and is also involved in the recruitment of leukocytes to sites of infection (<xref ref-type="bibr" rid="B155">155</xref>). The polymorphisms in the <italic>IL8</italic> gene have been the focus of some mastitis research (<xref ref-type="bibr" rid="B156">156</xref>, <xref ref-type="bibr" rid="B157">157</xref>). A polymorphism at +472 A&gt;G in <italic>IL8</italic> was reported to be associated with high milk SCC in <italic>S. aureus</italic> mastitis-infected dairy cattle (<xref ref-type="bibr" rid="B153">153</xref>). Moreover, the SNP -105G&gt;A in IL8 has been found to be associated with high milk SCS, immunity enhancement, and mastitis resistance (<xref ref-type="bibr" rid="B85">85</xref>). It has been documented that the mutation at point +735 G&gt;C could change the amino acid glutamine to histidine in the amino chain of <italic>CXCR2</italic>, which is linked to calcium signaling and G-protein interaction and has a key role in mastitis (<xref ref-type="bibr" rid="B158">158</xref>).</p>
<p>
<italic>The CXCR1</italic> gene, which coded interleukin 8 receptor &#x3b1; (IL8RA) and has the potential to bind IL8 with high affinity, is located on the surface of neutrophil surface (<xref ref-type="bibr" rid="B159">159</xref>, <xref ref-type="bibr" rid="B160">160</xref>). The role of <italic>CXCR1</italic> has been well-studied in mastitis resistance in dairy cattle research (<xref ref-type="bibr" rid="B158">158</xref>). Bacteria activate the <italic>CXCR1</italic> after interaction with <italic>TLR4</italic>, which further regulates the NF-&#x3ba;B signaling. The NF-&#x3ba;B translocates to the nucleus, binds with DNA, and causes the expression of the CXCR1 gene. Furthermore, the interaction of <italic>CXCR1</italic> or <italic>CXCR2</italic> with <italic>IL-8</italic> brings changes in neutrophils, which allow their chemotaxis toward the infection in the mammary gland (<xref ref-type="bibr" rid="B161">161</xref>), mediates the cell survival and migration, and increases the activity of phagocytosis (<xref ref-type="bibr" rid="B162">162</xref>, <xref ref-type="bibr" rid="B163">163</xref>). Several polymorphisms in <italic>CXCR</italic> genes have been identified so far for their possible role in mastitis resistance. Polymorphisms (SNPs -1830AA, -1768TT, and -344TT) (<xref ref-type="bibr" rid="B164">164</xref>) and mutation at point (SNP -1768T&gt;A) (<xref ref-type="bibr" rid="B165">165</xref>) in the <italic>CXCR1</italic> gene were linked with high milk SCC in dairy cattle. Similarly, another study also reported the significant association of SNP c.337A&gt;G and c.365C&gt;T in <italic>CXCR1</italic> with the milk SCC, suggesting their role in the host response against mastitis (<xref ref-type="bibr" rid="B166">166</xref>). A study found that the <italic>CXCR1</italic>+472 variant was significantly linked to milk SCS and increases the susceptibility to <italic>S. aureus-</italic>mastitis in dairy cattle (<xref ref-type="bibr" rid="B153">153</xref>). Similarly, other studies have also reported a strong link between <italic>CXCR1</italic> mutations c.980AG, c.735C&gt;G, <italic>CXCR1</italic>+472, <italic>CXCR1+</italic>777, and <italic>CXCR1</italic>&#x2212;1768 at position 5&#x2032; upstream region with milk SCC in dairy cattle (<xref ref-type="bibr" rid="B153">153</xref>, <xref ref-type="bibr" rid="B165">165</xref>, <xref ref-type="bibr" rid="B167">167</xref>&#x2013;<xref ref-type="bibr" rid="B169">169</xref>). Based on published research, it can be concluded that <italic>CXCR1</italic> and its reported polymorphisms might be considered potential markers for mastitis resistance/susceptibility in dairy cattle.</p>
<p>The bovine <italic>IL-17</italic> located on chromosome 23, containing 3 exons, is another critical gene studied for its important role in immunity and inflammation pathology (<xref ref-type="bibr" rid="B170">170</xref>). Comprehensive reviews have been published on the role of <italic>IL-17</italic> in the mediation of immunity and inflammation (<xref ref-type="bibr" rid="B171">171</xref>, <xref ref-type="bibr" rid="B172">172</xref>). Furthermore, it has been demonstrated that the members of the <italic>IL-17</italic> family have a key function in acute and chronic inflammation and have been associated with enhancing the host&#x2019;s defense against microbial organisms (<xref ref-type="bibr" rid="B173">173</xref>, <xref ref-type="bibr" rid="B174">174</xref>). Hu et&#xa0;al. reported that the expression of <italic>IL-17</italic> was significantly up-regulated upon challenging the mammary glands of mice with lipopolysaccharide (LPS). The elevated level of IL-17 is also associated with the regulation of nuclear factor-&#x3ba;B (NF-&#x3ba;B) signaling, which is crucial in mastitis susceptibility. The blockage of IL-17 with the anti-IL-17A antibody has been shown to protect dairy cows from LPS-induced mastitis by suppressing the pro-inflammatory cytokine levels, myeloperoxidase activity, and neutrophil infiltration and NF-&#x3ba;B signaling pathway (<xref ref-type="bibr" rid="B175">175</xref>). In 2017, Usman and his co-workers found polymorphism (24392436C/T) in <italic>IL-17F</italic> and mutation (24345410&#xa0;A &gt; G) in <italic>IL-17A</italic>, which shows an association between the regulation of immunity and inflammation signaling and high milk SCS in both Chinese Holstein and Sanhe cattle (<xref ref-type="bibr" rid="B38">38</xref>). Furthermore, the polymorphism (1578A&gt;G) in <italic>IL17A</italic> regulated the milk SCC and, thus, their expression might be a potential marker for mastitis susceptibility (<xref ref-type="bibr" rid="B91">91</xref>). The <italic>IL-17A</italic> production was documented during <italic>S. uberis</italic> mastitis (<xref ref-type="bibr" rid="B176">176</xref>), and slightly increased expression was also noticed in <italic>S. aureus</italic>-infected cows&#x2019; somatic cells (<xref ref-type="bibr" rid="B177">177</xref>). Furthermore, an <italic>in-vitro</italic> study illustrated that the <italic>IL-17A</italic> reinforces the ability of mammary epithelial cells (MEC) to resist the consequences of S. aureus (<xref ref-type="bibr" rid="B178">178</xref>). Additionally, it has been found that <italic>IL-17F</italic> and <italic>IL-17A</italic> are significantly regulated in mammary tissue in response to <italic>E.coli</italic> (<xref ref-type="bibr" rid="B179">179</xref>). Moreover, Roussel and his co-workers experimentally proved that <italic>IL-17 F</italic> and <italic>IL-17A</italic> could play an essential role in regulating host-pathogen relations during mastitis development (<xref ref-type="bibr" rid="B179">179</xref>). In addition, a study reported that <italic>IL-17</italic> positively regulates CD4+ T cells to facilitate the immune system against pathogenic infection (<xref ref-type="bibr" rid="B180">180</xref>).</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>The association of genetic polymorphisms in JAK-STAT pathway genes with mastitis</title>
<p>The JAK-STAT has been widely studied for its critical role in immunity and inflammation (<xref ref-type="bibr" rid="B181">181</xref>, <xref ref-type="bibr" rid="B182">182</xref>), and evidence indicates that persistent activation of this pathway might lead to many immunity- (<xref ref-type="bibr" rid="B183">183</xref>) and inflammation-related diseases (<xref ref-type="bibr" rid="B184">184</xref>, <xref ref-type="bibr" rid="B185">185</xref>). Due to its significant role in immunity, cell proliferation, cell differentiation, and inflammation, the JAK-STAT pathway has been widely targeted for therapeutic purposes in several diseases (<xref ref-type="bibr" rid="B186">186</xref>). Furthermore, playing a critical role in mammary gland development, any abnormal regulation of the JAK-STAT pathway may disturb normal function, resulting in impairment of mammary gland development and exposure to mammary infections. As mastitis is an immunity and inflammatory-related disease, the JAK-STAT pathway should be explored in mastitis control research (<xref ref-type="bibr" rid="B187">187</xref>). <italic>JAK2</italic> and <italic>STAT5A &amp; B</italic> are the key parts of JAK-STAT signaling, which have been recently studied for their association with mastitis resistance (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B37">37</xref>, <xref ref-type="bibr" rid="B48">48</xref>, <xref ref-type="bibr" rid="B95">95</xref>). Furthermore, it has been noticed that the polymorphism at point 39630048C/T in <italic>JAK2</italic> was associated with interleukin-17 (IL-17) (<xref ref-type="bibr" rid="B34">34</xref>), IL-6 and IFN-&#x3b3; (<xref ref-type="bibr" rid="B32">32</xref>). In addition, the SNPs (39652267A/G, 39631175T/C) in the <italic>JAK2</italic> gene were documented for their significant links with milk SCC, IL-6, and IFN-&#x3b3; (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B34">34</xref>). The mutation (39631044G/A) in the Jak2 gene was noticed to be significantly associated with milk SCS in Chinese Holstein (<xref ref-type="bibr" rid="B34">34</xref>). Moreover, the variation at point 39645396C/T in the <italic>JAK2</italic> gene was linked to milk SCC, IL-6, and IFN-&#x3b3; (<xref ref-type="bibr" rid="B37">37</xref>), while SNP-39631044G/A in <italic>JAK2</italic> was associated with milk SCS (<xref ref-type="bibr" rid="B34">34</xref>). Consequently, it is predicted that the SNP (39645396C/T), which regulates the production of inflammatory cytokines, is responsible for changing the amino acid from lysine to asparagines and can, therefore, be targeted as a functional candidate marker for mastitis resistance (<xref ref-type="bibr" rid="B37">37</xref>). Other studies also reported a higher expression of <italic>IL-6</italic> in Plasma cell mastitis (PCM), which indicates that the IL-6/STAT3 pathway could play a vital role in the pathogenesis of PCM (<xref ref-type="bibr" rid="B188">188</xref>, <xref ref-type="bibr" rid="B189">189</xref>).</p>
<p>A variety of cytokines and growth factors activate <italic>STATs</italic>, which are a family of latent transcription factors. Members of the STATs family are involved in growth, differentiation, survival, and apoptosis. Among the seven members of the <italic>STATs family</italic> (<italic>STAT1</italic>-4, 5a, 5b, and 6) in mammalian cells, <italic>STAT5A</italic> and <italic>STAT5B</italic> are the most closely linked and are the result of duplication (<xref ref-type="bibr" rid="B190">190</xref>). <italic>STAT5</italic>, a primary gene of the JAK/STAT inflammation signaling pathway, has an essential role to play in prolactin-induced mammary gland development and is associated with mammary gland development in transgenic mice (<xref ref-type="bibr" rid="B191">191</xref>). A few studies noticed a significant association of polymorphism in the <italic>STAT5A</italic> and <italic>STAT5B</italic> genes with mastitis resistance phenotypic traits (<xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B37">37</xref>). They documented that polymorphism in <italic>STAT5A</italic> (43046497A/C) was associated with IL-6 and also changed the amino acid isoleucine to valine (<xref ref-type="bibr" rid="B34">34</xref>). Similarly, mutation at point 43673888A&gt;G in the <italic>STAT5B</italic> gene was significantly linked to mastitis resistance phenotypic traits (IL-4 and SCC) (<xref ref-type="bibr" rid="B37">37</xref>). Bochniarz et&#xa0;al. reported the elevated level of IL-6 and the reduced level of IL-4 in the milk and serum of cows infected with <italic>S. aureus</italic> (<xref ref-type="bibr" rid="B192">192</xref>). Khatib et&#xa0;al. noticed that variant 12195T/C in <italic>STAT5A</italic> was significantly linked to a decrease in milk fat and protein percentages as well as levels of SCS in dairy cattle (<xref ref-type="bibr" rid="B193">193</xref>). Based on the above-published data, it can be concluded that JAK-STAT signaling plays a key role in immunity and inflammation; thus, the polymorphisms in the genes of JAK-STAT signaling might be valuable additions to the genetic markers for increasing genetic mastitis resistance in dairy cattle.</p>
</sec>
</sec>
<sec id="s4">
<label>4</label>
<title>Bioinformatic analysis to find the biological signaling pathways for the above-mentioned genes</title>
<p>Bioinformatics analysis was performed to discover the significantly regulated biological signaling pathways of the above-mentioned genes. For this purpose, we collected all the genes (mentioned in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>) with their Ensembl IDs (already discussed in the current review article) and uploaded them to the online DAVID software (<uri xlink:href="https://david.ncifcrf.gov/tools.jsp">https://david.ncifcrf.gov/tools.jsp</uri>) (<xref ref-type="bibr" rid="B194">194</xref>). Through bioinformatics analysis, we reported several immunity and inflammatory signaling pathways (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;2</bold>
</xref>), of which, staphylococcus aureus infection, chemokine signaling pathway, toll-like receptor signaling pathway, complement and coagulation cascades, cytokine-cytokine receptor interaction, and NF-kappa B signaling pathway were found for their involvement in mastitis (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). In addition, the regulation mechanisms of staphylococcus aureus infection, chemokine signaling pathway, and toll-like receptors signaling pathways are shown in <xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1</bold>
</xref>&#x2013;<xref ref-type="fig" rid="f3">
<bold>3</bold>
</xref> respectively.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Immune- and inflammation-associated genes and their biological signaling pathways linked with bovine mastitis.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Biological signaling pathways</th>
<th valign="top" align="center">Genes involved in biological signaling pathways</th>
<th valign="top" align="center">References</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">bta04610:Complement and coagulation cascades</td>
<td valign="top" align="left">C4A, C5, MASP2, A2M, CD46, CLU, MBL1, MBL2</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B187">187</xref>, <xref ref-type="bibr" rid="B195">195</xref>); current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04145:Phagosome</td>
<td valign="top" align="left">NCF1, NCF4, CD14, TLR4, MBL1, MBL2, TLR2</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B196">196</xref>), current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta05150:Staphylococcus aureus infection</td>
<td valign="top" align="left">C4A, C5, MASP2, MBL1, MBL2</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B187">187</xref>, <xref ref-type="bibr" rid="B196">196</xref>); current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04620:Toll-like receptor signaling pathway</td>
<td valign="top" align="left">CXCL8, LBP, CD14, TLR4, TLR2</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B187">187</xref>, <xref ref-type="bibr" rid="B195">195</xref>); current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04613:Neutrophil extracellular trap formation</td>
<td valign="top" align="left">C5, NCF1, NCF4, HMGB1, TLR4, TLR2</td>
<td valign="top" align="left">current analysis; (<xref ref-type="bibr" rid="B197">197</xref>, <xref ref-type="bibr" rid="B198">198</xref>); current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04658:Th1 and Th2 cell differentiation</td>
<td valign="top" align="left">STAT5A, STAT5B, CD4, JAK2</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B199">199</xref>; current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04064:NF-kappa B signaling pathway</td>
<td valign="top" align="left">CXCL8, LBP, CD14, TLR4</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B187">187</xref>, <xref ref-type="bibr" rid="B195">195</xref>); current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04659:Th17 cell differentiation</td>
<td valign="top" align="left">STAT5A, STAT5B, CD4, JAK2</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B199">199</xref>); current analysis</td>
</tr>
<tr>
<td valign="top" align="left">bta04060:Cytokine-cytokine receptor interaction</td>
<td valign="top" align="left">CD4, CXCL8, CXCR1, CXCR2</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B187">187</xref>, <xref ref-type="bibr" rid="B195">195</xref>); current analysis</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Staphylococcus aureus can cause multiple forms of infections ranging from superficial skin infections to food poisoning and life-threatening infections. The organism has several ways to divert the effectiveness of the immune system: secreting immune-modulating proteins that inhibit complement activation and neutrophil chemotaxis or lysis, modulating sensitivity to cationic antimicrobial peptides (such as defensin) by increasing the positive net charge of its cytoplasmic membrane, and the expression of superantigens that prevent the development of a normal immune response or cause an emetic response when ingested.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1082144-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Inflammatory immune response requires the recruitment of leukocytes to the site of inflammation upon foreign insult. Chemokines are small chemoattractant peptides that provide directional cues for cell trafficking and are therefore vital for protective host response. In addition, chemokines regulate a plethora of biological processes of hematopoietic cells, leading to cellular activation, differentiation, and survival. The chemokine signal is transduced by chemokine receptors (G-protein coupled receptors) expressed on the immune cells. After receptor activation, the alpha- and beta-gamma-subunits of G protein dissociate to activate diverse downstream pathways, resulting in cellular polarization and actin reorganization. Various members of small GTPases are involved in this process. The induction of nitric oxide and the production of reactive oxygen species are also regulated by the chemokine signal <italic>via</italic> calcium mobilization and diacylglycerol production.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1082144-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Specific families of pattern recognition receptors are responsible for detecting microbial pathogens and generating innate immune responses. Toll-like receptors (TLRs) are membrane-bound receptors identified as homologs of Toll in Drosophila. Mammalian TLRs are expressed on innate immune cells, such as macrophages and dendritic cells, and respond to the membrane components of Gram-positive or Gram-negative bacteria. Pathogen recognition by TLRs provokes the rapid activation of innate immunity by inducing the production of proinflammatory cytokines and the upregulation of costimulatory molecules. TLR signaling pathways are separated into two groups: a MyD88-dependent pathway that leads to the production of proinflammatory cytokines with the quick activation of NF-KB and MAPK and a MyD88-independent pathway associated with the induction of IFN-beta and IFN-inducible genes and the maturation of dendritic cells with slow activation of NF-KB and MAPK.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-14-1082144-g003.tif"/>
</fig>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusion</title>
<p>Altogether, we concluded that an appropriate approach to identifying genetically resistant animals would be to study the association of host genetics with mastitis susceptibility and resistance, thus, genetic marker selection was determined as the best approach to screening genetically mastitis-resistant cattle. In the current review, we have highlighted potential genetic polymorphisms in inflammation- and immune-associated gene markers that are significantly associated with mastitis resistance/susceptibility in dairy cattle. The highlighted polymorphisms in immune- and inflammation-associated genes could be considered potential biomarkers in bovine mastitis control research.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>MZK, JW, SL and ZC designed the study and wrote the manuscript; ZC and SL supervised the manuscript; MM, QU, AK, YM, JW, TC, IMK, MZK and SL helped in the collection of data resources and editing of final version of the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the grants from National Key Research and Development Program of China (2021YFF1000703-03), the 2115 Talent Development Program of China Agricultural University (2115) and the Key Research and Development Program of Ningxia Hui Autonomous Region (2022BBF02018-01). The funders had no role in study design, data collection, and analysis, decision to publish, or preparation of the manuscript.</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We acknowledged the support provided by the National Key Research and Development Program of China (2021YFF1000703-03). We are thankful to the 2115 Talent Development Program of China Agricultural University (Beijing, P. R. China), the Key Research and Development Program of Ningxia Hui Autonomous Region (2022BBF02018-01) and China Animal Husbandry Group (DR201905) for their financial support.</p>
</ack>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s9" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s10" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fimmu.2023.1082144/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fimmu.2023.1082144/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
<supplementary-material xlink:href="Table_2.docx" id="SM2" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
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