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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2022.752065</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Small Molecule Agents Targeting PD-1 Checkpoint Pathway for Cancer Immunotherapy: Mechanisms of Action and Other Considerations for Their Advanced Development</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Sasikumar</surname>
<given-names>Pottayil G.</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1777420"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Ramachandra</surname>
<given-names>Murali</given-names>
</name>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1280996"/>
</contrib>
</contrib-group>
<aff id="aff1">
<institution>Aurigene Discovery Technologies Limited</institution>, <addr-line>Bangalore</addr-line>, <country>India</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Bin Zhang, Northwestern University, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Evelien Smits, University of Antwerp, Belgium; Sung Yong Lee, Korea University Guro Hospital, South Korea</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Murali Ramachandra, <email xlink:href="mailto:murali_r@aurigene.com">murali_r@aurigene.com</email> </p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Cancer Immunity and Immunotherapy, a section of the journal Frontiers in Immunology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>02</day>
<month>05</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>752065</elocation-id>
<history>
<date date-type="received">
<day>02</day>
<month>08</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>03</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Sasikumar and Ramachandra</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Sasikumar and Ramachandra</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Pioneering success of antibodies targeting immune checkpoints such as programmed cell death protein 1 (PD-1) and cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) has changed the outlook of cancer therapy. Although these antibodies show impressive durable clinical activity, low response rates and immune-related adverse events are becoming increasingly evident in antibody-based approaches. For further strides in cancer immunotherapy, novel treatment strategies including combination therapies and alternate therapeutic modalities are highly warranted. Towards this discovery and development of small molecule, checkpoint inhibitors are actively being pursued, and the efforts have culminated in the ongoing clinical testing of orally bioavailable checkpoint inhibitors. This review focuses on the small molecule agents targeting PD-1 checkpoint pathway for cancer immunotherapy and highlights various chemotypes/scaffolds and their characterization including binding and functionality along with reported mechanism of action. The learnings from the ongoing small molecule clinical trials and crucial points to be considered for their clinical development are also discussed.</p>
</abstract>
<kwd-group>
<kwd>PD-L1 inhibitors</kwd>
<kwd>cancer immunotherapy</kwd>
<kwd>mechanism of action (MOA)</kwd>
<kwd>small molecule immunomodulators</kwd>
<kwd>small molecule PD-1/PD-L1 inhibitors</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="125"/>
<page-count count="19"/>
<word-count count="10131"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Background</title>
<p>Checkpoint inhibitors have transformed cancer therapy by harnessing the power of the immune system to fight cancer, and this breakthrough has now been considered as one of the most exciting discoveries of the twenty-first century (<xref ref-type="bibr" rid="B1">1</xref>). Among the various cancer immunotherapies such as checkpoint inhibitors, adoptive T-cell transfer, oncolytic viruses and cancer vaccines, immune checkpoint inhibitors have shown remarkable response in clinical trials and are currently regarded as the most successful class of cancer immunotherapy. Since the Food and Drug Administration (FDA) approval of anti-CTLA-4 antibody ipilimumab in 2011, several antibodies targeting PD-1/programmed death-ligand 1 (PD-L1) immune checkpoint pathway have been approved for cancer therapy in various indications with many more in the pipeline (<xref ref-type="bibr" rid="B2">2</xref>). In this review, we have highlighted the progress in the discovery and development of small molecule agents interfering in the PD-1 pathway, with majority of the reported compounds targeting PD-L1, along with their mechanisms of action and specific considerations that are relevant for their advanced development.</p>
</sec>
<sec id="s2">
<title>Limitations of Immune Checkpoint Blockade Therapy Associated With Antibodies</title>
<p>While these antibody-based therapies show notable clinical activity, they suffer from serious treatment-related toxicities known as immune-related adverse events (irAEs) mostly due to the dysregulation in the immune system balance (<xref ref-type="bibr" rid="B3">3</xref>). The wide range of irAEs are reported to involve almost any tissue or organ with most severe complications manifesting as skin rashes, pneumonitis, hypothyroidism, pancreatitis, encephalopathy, hepatitis, myocarditis, and immune cytopenias (<xref ref-type="bibr" rid="B4">4</xref>). Antibodies targeting PD-1 pathways are reported to have lower incidence of adverse events than agents targeting CTLA-4 pathway (<xref ref-type="bibr" rid="B5">5</xref>), whereas combination therapy with antibodies targeting both CTLA-4 and PD-1 is reported to have higher rate of irAEs with a greater number of grade 3 and 4 treatment&#x2010;related adverse events and treatment discontinuations (<xref ref-type="bibr" rid="B6">6</xref>, <xref ref-type="bibr" rid="B7">7</xref>). Even though irAEs can be resolved by appropriate management of immunosuppression with corticosteroids or other immunosuppressant agents such as infliximab, it may expose patients to a higher risk of developing infections (<xref ref-type="bibr" rid="B8">8</xref>). Sustained target inhibition due to long half-life (&gt;15&#x2013;20 days) and ~70% target occupancy for months are likely contributing to severe irAEs (<xref ref-type="bibr" rid="B9">9</xref>&#x2013;<xref ref-type="bibr" rid="B11">11</xref>). Apart from toxicity, one of the major deficiencies of approved PD-1/PD-L1 targeted antibodies is their response only in a subset of patient population, which could be partly due to the compensatory mechanisms such as upregulation of alternative immune checkpoints such as T-cell immunoglobulin and mucin-domain containing-3 (TIM-3) and V-domain Ig suppressor of T-cell activation (VISTA) (<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B13">13</xref>). Physiological barriers of antibodies (<xref ref-type="bibr" rid="B14">14</xref>) limit their tumor exposure, and the large size of these agents warrants their intravenous dosing in a hospital setting. Last but not the least is the low affordability, since the treatment cost for a single agent therapy can reach more than US$100,000 per patient annually. Furthermore, the requirement for the rational combination with other therapeutic agents to achieve greater response is expected to make checkpoint antibody therapy prohibitively expensive (<xref ref-type="bibr" rid="B15">15</xref>).</p>
</sec>
<sec id="s3">
<title>Opportunities for Small Molecule Agents to Address the Limitations</title>
<p>Even though deficiencies of antibody-based PD-1/PD-L1 targeted agents underscore the need for alternate approaches, the development of small molecule inhibitors has been significantly behind despite the great potential. The advantages of small molecule agents over antibodies to target PD-1 and other immune checkpoint pathways are summarized in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. However, small molecule agents also have a few limitations including their shorter half-life, broad drug distribution resulting in on- and off-target toxicity, potential for reduced specificity and selectivity, and species-specific activity in some instances, making it highly challenging to find appropriate preclinical pharmacology models. These shortcomings might have contributed to the initial lack of enthusiasm in the scientific community compared to monoclonal antibody-based inhibitors as reflected in dramatically less preclinical and clinical efforts focused on the small molecule-based approach. Lessons learned from the highly successful development of small molecule therapeutics against specific targets including protein tyrosine kinases, growth factor receptors, and cell cycle regulatory proteins can be adapted to fully exploit the distinct advantages of small molecule approaches (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Advantages of small molecule agents over antibodies to target PD-1 and other immune checkpoint pathways.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Parameter</th>
<th valign="top" align="center">Antibody</th>
<th valign="top" align="center">Small molecule </th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Route of administration</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Requirement to dose by intravenous or other parenteral route making it inconvenient to patients (<xref ref-type="bibr" rid="B16">16</xref>)</p>
</list-item>
<list-item>
<p>Administration in a clinical setting adds to the cost</p>
</list-item>
</list>
</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Potential for oral bioavailability offering the convenience to patients</p>
</list-item>
<list-item>
<p>No need to visit the clinic for dose administration (<xref ref-type="bibr" rid="B17">17</xref>)</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">Tumor distribution</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Limited tumor distribution because of the larger size (<xref ref-type="bibr" rid="B18">18</xref>)</p>
</list-item>
</list>
</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Better tumor distribution expected and greater opportunities to fine tune the physico-chemical properties for improvement</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">Clinical response</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Due to high degree of selectivity, response not expected when intrinsic and adaptive resistance are due to another immune checkpoint pathway(s) (<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B13">13</xref>)</p>
</list-item>
</list>
</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Simultaneous targeting of more than one immune checkpoint proteins with the same agent because of the significant structural homology to drive greater response possible (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B20">20</xref>)</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">Management of immune-related toxicity</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Due to long pharmacokinetic half-life, typically in weeks, aggressive treatment with immunosuppressants needed while increasing the infection risk (<xref ref-type="bibr" rid="B8">8</xref>)</p>
</list-item>
</list>
</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Because of the shorter pharmacokinetic half-life, typically in hours, treatment cessation can be employed for better management of any emergent adverse events (<xref ref-type="bibr" rid="B21">21</xref>)</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">Manufacturing and logistics cost</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Due to recombinant mode of production, high cost associated with production, product heterogeneity, and greater regulatory hurdles (<xref ref-type="bibr" rid="B18">18</xref>)</p>
</list-item>
<list-item>
<p>Cold chain transport and storage required because of their thermo labile nature</p>
</list-item>
</list>
</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Synthetic mode of production leading to lower cost of goods, product homogeneity, and lower regulatory hurdles (<xref ref-type="bibr" rid="B22">22</xref>)</p>
</list-item>
<list-item>
<p>Cold chain transport and storage not needed due to their thermo stability</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">Regulatory hurdles</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>High due to recombinant production (<xref ref-type="bibr" rid="B23">23</xref>, <xref ref-type="bibr" rid="B24">24</xref>)</p>
</list-item>
</list>
</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>Low and straight forward due to synthetic production</p>
</list-item>
</list>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s4">
<title>Considerations for Targeting PD-1 Signaling Pathway Using Small Molecules</title>
<p>The PD-1&#x2013;PD-L1 receptor&#x2013;ligand interaction is a classic example of protein&#x2013;protein interaction (PPI); hence, designing inhibitors for these interactions are highly challenging. Antibodies and fusion proteins are the preferred approach to modulate such PPI dysregulation primarily due to (a) the large interfacial area of the interaction (1,500&#x2013;3,000 &#xc5;), (b) the presence of flat interface without deep and well-defined pockets that are suitable to bind a ligand with high-affinity, (c) the lack of endogenous low molecular ligands that can be considered as reference standards for small molecule chemistry starting points (<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>)</p>
<p>General perception is that the druggability of an interaction pocket increases logarithmically with total surface area and non-polar contact area, while it decreases logarithmically with polar contact area (<xref ref-type="bibr" rid="B27">27</xref>). Efforts to increase the affinity of small molecules to the binding partner often results in increased lipophilicity, which is believed to negatively impact the druggability due to reduced solubility, bioavailability, and increased off-target toxicity. Natural complexes, either protein&#x2013;protein interactions or protein&#x2013;peptide ligand interactions, typically engage in more polar contacts than synthetic greasy molecules, with a lot of unmatched hetero atoms bound to proteins. Druggable binding sites are often oversimplified as closed, hydrophobic cavities, but data set analysis reveals that polar groups in druggable binding sites have properties that enable them to play a decisive role in ligand recognition (<xref ref-type="bibr" rid="B28">28</xref>). The influence of hotspots, which are small areas of the protein&#x2013;protein interface contributing most of the binding energy within one hot region, is cooperative to stabilize protein interfaces, and they are networked to provide stability of PPIs, with contributions between various hot regions can be either additive (<xref ref-type="bibr" rid="B29">29</xref>) or cooperative (<xref ref-type="bibr" rid="B30">30</xref>). Hotspots are also defined as residues that impede protein&#x2013;protein interactions if mutated (<xref ref-type="bibr" rid="B31">31</xref>). Hotspots tend to occur in clusters and are in contact with each other resulting in hot regions, a network of conserved interactions (<xref ref-type="bibr" rid="B32">32</xref>). Antibodies are considered widely acceptable approach to target PPIs, since they could target or bind a vast region covering the discontinuos tertiary epitopes. Hence, while designing small molecule agents, the compounds need to be targeted to interact with either in one hot region (either hydrophobic or hydrophilic), which could be a critical contributor to the signaling pathways or need to engage with critical residues in multiple hot regions (both hydrophobic and hydrophilic) if an additive effect on hotspots is required for the desired pharmacological effects. In agreement with the concepts described above, the identification of small molecule PPI inhibitors have been possible because of the presence of PPI hotspots (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B34">34</xref>).</p>
<p>Advances in solving the crystal structure of PD-1:PD-L1 and PD-1:PD-L2 complexes and mapping of the molecular networks resulted in the identification of several potential hotspots. Three major hot regions identified on PD&#x2010;L1 based on PD-1:PD-L1 crystal structure are (1) hydrophobic pocket consisting of the side chains of Tyr56, Glu58, Arg113, Met115, and Tyr123; (2) second pocket nearby hydrophobic cleft composed of Met115, Ala121, and Tyr123; and (3) extended groove made up of the main chain and side chains of Asp122, Tyr123, Lys124, and Arg125 (<xref ref-type="bibr" rid="B35">35</xref>). In the PD-1:PD-L1 interface, hot region containing hydrophobic regions are involved in hotspots 1 and 2 and are proposed to be ideal for binding to PD-L1 using conventional small molecules. Hotspots in the PD1:PD-L interaction have also been quantitatively predicted based on the theoretical calculations (<xref ref-type="bibr" rid="B36">36</xref>). This analysis has identified six hot spots on PD-L1 (Tyr123, Tyr56, Arg125, Met115, Arg113, and Gln66) and two warm spots on PD-L1 (Ile54 and Lys124) (<xref ref-type="bibr" rid="B36">36</xref>). Among various hotspots/hot regions reported, the hydrophilic hot region containing polar residues is reported to be a solvent exposed with extended shallow groove and with multiple hydrogen bond donors and acceptors and is considered to be challenging to target <italic>via</italic> conventional small molecules abiding the famous rule of five (<xref ref-type="bibr" rid="B37">37</xref>).</p>
</sec>
<sec id="s5">
<title>Two Major Classes of Small Molecules Targeting PD1-PD-L1 Axis</title>
<p>A survey of the literature as highlighted in this section below indicates predominantly two different classes of small molecule inhibitors targeting PD-L1, namely, (a) compounds based on the biphenyl scaffold, originally identified by a conventional approach of screening compounds in a binding assay and (b) amino acids-inspired small molecules mimicking the receptor&#x2013;ligand interface identified in a functional assay.</p>
<sec id="s5_1">
<title>Biphenyl Derivatives</title>
<p>Scientists from BMS reported a series of substituted biphenyl derivatives based on their ability in preventing the PD-1:PD-L1 interaction. Extensive characterization and elucidation of the mode of action of these compounds (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>) have been reported in several publications (discussed in detail in the following section). However, further advancement of these interesting but highly hydrophobic small molecules into the clinic has not been reported. The contributions of hotspots for stabilizing PPIs can be either additive or cooperative, and if the targeting of one of the hotspots is not good enough to achieve the desirable activity, design strategies need to be included to cover one or more hotspots. Based on this rationale, the binding mode of Compound 2a (BMS-1001 in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>), which contains the 2,3-dihydro-1,4-benzodioxinyl group and polar groups, is more effective in dimerization of PD-L1 ligands with a network of hydrophobic and polar interactions compared to the first-generation BMS-type compounds, which can bind to only hydrophobic cleft (<xref ref-type="bibr" rid="B38">38</xref>). Since the last 6 years, several companies including Incyte Corporation, Arising International Inc., Chemocentryx Inc., Polaris Pharmaceuticals, and Guangzhou Maxinovel Pharmaceuticals Co. have discovered a series of small molecule PD-L1 inhibitors based on the biphenyl core (<xref ref-type="bibr" rid="B39">39</xref>&#x2013;<xref ref-type="bibr" rid="B41">41</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Compounds based on the biphenyl scaffold, originally identified by a conventional approach of screening compounds in an assay for prevention of the PD-1, PD-L1 interaction.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-752065-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Representative structures of first-generation biphenyl derivatives and C<sub>2</sub> symmetric compounds targeting PD-L1.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-752065-g002.tif"/>
</fig>
<p>Among the new modified biphenyl scaffolds, compounds with C<sub>2</sub> symmetry or pseudosymmetry containing polar groups are gaining a lot of attention than asymmetric structure (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The C<sub>2</sub>&#x2212;symmetric small molecule inhibitors of PD-1:PD-L1 interaction containing the lipophilic biphenyl core for binding to PD-L1 at its PD-1 binding site to occupy the hydrophobic cleft have been reported (<xref ref-type="bibr" rid="B42">42</xref>). NMR and X-ray co-crystal structural studies indicated that symmetric molecules such as LH1306 and LH1307 induce formation of a more symmetrically arranged PD-L1 dimer than previously reported asymmetric inhibitors. The polar groups 2-(acetamido) ethylamine of BMS-202, incorporated into the C<sub>2</sub> symmetric molecules, LH1306 and LH1307, are reported to extend out the hydrophobic cleft and occupy the solvent-exposed region sandwiched between the AG and C&#x2032;C &#x3b2; strands of the respective PD-L1 proteins, further enhancing binding to the two PD-L1 monomers <italic>via</italic> hydrogen bonds and electrostatic interactions. It was also hypothesized that a symmetric compound would induce a flip of sidechain of Tyr56 protein residue to form a new cavity, leading to increased binding affinity to PD-L1, and PD-1/PD-L1 inhibitory activity in physiological conditions as reported for Compound 4 (<xref ref-type="bibr" rid="B43">43</xref>). The improved cellular activity of the PD-L1 inhibitor ARB-272572 further demonstrated the importance of C<sub>2</sub>-biphenyl skeleton and symmetry with polar (2-hydroxyl ethyl)amino group extended from the hydrophobic cleft (<xref ref-type="bibr" rid="B44">44</xref>). Representative structures of compounds disclosed by BMS, Incyte, and C<sub>2</sub> symmetric compounds are presented in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>.</p>
<p>A number of reports are also emerging recently from the industry and academia using the privileged structure of biphenyl-containing compounds and their various derivatives to improvise the druggability of the molecules. This includes scaffold based on nicotinyl alcohol ether derivative (<xref ref-type="bibr" rid="B45">45</xref>&#x2013;<xref ref-type="bibr" rid="B47">47</xref>), resorcinol dibenzyl ether (<xref ref-type="bibr" rid="B48">48</xref>), 4-phenylindoline derivatives (<xref ref-type="bibr" rid="B49">49</xref>), combining two privileged scaffolds such as biphenyl backbone structure and 2-amino-pyrimidine structure (<xref ref-type="bibr" rid="B50">50</xref>), biphenyl-4-carboxamide derivatives (<xref ref-type="bibr" rid="B51">51</xref>), incorporating taurine moieties (<xref ref-type="bibr" rid="B52">52</xref>), 1-methyl-1H-pyrazolo[4,3-b] pyridine derivatives (<xref ref-type="bibr" rid="B53">53</xref>), replacing the linker connecting aryl group and biaryl core with a novel amine linker (<xref ref-type="bibr" rid="B54">54</xref>), a series of novel biphenyl pyridines derivatives lacking linker (<xref ref-type="bibr" rid="B55">55</xref>), biphenyl methyl nitrophenyl core unit (<xref ref-type="bibr" rid="B56">56</xref>), and terphenyl scaffold derived from the rigidified biphenyl inspired structure (<xref ref-type="bibr" rid="B57">57</xref>). Representative structures of the compounds disclosed are presented in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Representative structures of modified biphenyl analogues without C<sub>2</sub> symmetry but with improved druggability.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-752065-g003.tif"/>
</fig>
</sec>
<sec id="s5_2">
<title>Amino Acid Inspired Interface Mimics</title>
<p>The presence of distinct interface of PPIs involving the loops/strand sequences can be exploited in identifying peptides that mimic the native interaction interface. Checkpoint proteins are membrane proteins with majority of them from the B7 family (<xref ref-type="bibr" rid="B58">58</xref>). Most of the members of the B7 family and their ligands belong to the immunoglobulin superfamily (IgSF). All IgSF proteins have a characteristic Ig-fold structure with an IgG domain consisting of anti-parallel &#x3b2;-strands and loops connecting the &#x3b2;-strands with most strands constituting ~10 amino acids. Receptor&#x2013;ligand interaction of IgSF proteins is mediated either through loops, strands, or loops and strands. Rational design of peptides based on these interacting interfaces is a proven strategy for design of PPI inhibitors (<xref ref-type="bibr" rid="B59">59</xref>). However, due to the inherent limitations of peptides in general, the focus has now shifted to peptide mimics by depeptidizing the short stretch of residues with cyclic linkages, un-natural linkages, retro and retro-inverso amides, urea, and non-amide bonds as peptide bond surrogates.</p>
<p>Proteins are built from a set of only 20 amino acids, and the side chains, which are unique to each amino acid, exhibit different chemistries. The side chains of amino acids involved in hotspots residues are crucial and participate either in polar contacts or hydrophobic interactions in the interface of PPI contributing to stability and specificity of the interaction. In general, a peptidomimetic is referred as bioactive peptide mimicking molecules with the side chain groups of critical amino acids oriented to enable bioactive conformation to yield desirable pharmacological properties (<xref ref-type="bibr" rid="B60">60</xref>). The peptidomimetic structure ranges from molecular scaffolds replacing the peptide backbone, to compounds with modified peptide sequences with improved therapeutic properties (<xref ref-type="bibr" rid="B61">61</xref>&#x2013;<xref ref-type="bibr" rid="B64">64</xref>).</p>
<p>Utilization of the design principles described above, several peptidomimetics were identified, but none of the peptidomimetics capable of antagonizing the PD-1 signaling exhibit oral bioavailability (<xref ref-type="bibr" rid="B65">65</xref>). Therefore, the native interaction pharmacophore first identified by the reductionist approach comprising of three to five amino acids, as in the case of typical peptidomimetic, was radically redesigned (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). In this design strategy, compounds with side chain functionalities of the amino acids from the native interaction pharmacophore protrude from a heterocyclic template with no amide bonds, in which the side chains are the critical interacting motifs of PPI hotspots, while the metabolically stable heterocyclic template anchors the amino acid side chains presumably in a required geometry (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>). The novel heterocyclic oxadiazole templates were obtained by fusing two amino acids while presenting the desired amino acid side chains to interact with residues on PD-L1, while bringing in the remaining amino acid(s) from the pharmacophore through the use of linkers such as urea bonds resulting in the compound such as CA-170 (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B66">66</xref>&#x2013;<xref ref-type="bibr" rid="B68">68</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Amino-acid-inspired small molecules mimicking the receptor&#x2013;ligand interface identified in a functional assay.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-752065-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Representative structures of amino-acid-inspired interface mimics targeting PD-L1.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-752065-g005.tif"/>
</fig>
<p>Recently, scientists from Guangzhou Medicine Pharmaceutical Biological Co. Ltd. and Nanjing Sanhome Pharmaceutical disclosed in their patent applications the close analogues of the lead PD-L1 inhibitor compound from Aurigene approach: (a)&#xa0;cyclizing oxadiazole head to tail by a short PEG linker (<xref ref-type="bibr" rid="B69">69</xref>) and (b) incorporating unnatural amino acids majorly containing cyclobutyl groups for oxadiazole generation instead of &#x3b1;-amino acid reported by Aurigene (<xref ref-type="bibr" rid="B70">70</xref>). The detailed profile of these compounds is yet to be published.</p>
<p>As discussed earlier in this article, to improve the clinical response rate, one of the strategies would be to target simultaneously more than one non-redundant checkpoint pathways. It was hypothesized that a substantially reduced native pharmacophore derived from protein&#x2013;protein interacting interfaces of one of the B7 family protein (such as PD-1) also has the potential to interact with other proteins belonging to IgSF (such as VISTA and TIM3) with structurally similar grooves induced by pockets of sequence similarity (<xref ref-type="bibr" rid="B71">71</xref>). A focused library was designed and synthesized using amino acids in the hotspot region including conserved residues in the hotspot regions to identify selective or spectrum-selective inhibitors targeting one or more non-redundant checkpoint signaling pathways such as PD-L1 and VISTA (<xref ref-type="bibr" rid="B72">72</xref>), PD-L1 and TIM3 (<xref ref-type="bibr" rid="B73">73</xref>, <xref ref-type="bibr" rid="B74">74</xref>), VISTA (<xref ref-type="bibr" rid="B75">75</xref>), TIM-3 (<xref ref-type="bibr" rid="B76">76</xref>), PD-L1 and T-cell immunoreceptor with immunoglobulin and ITIM domain (TIGIT) (<xref ref-type="bibr" rid="B77">77</xref>), TIGIT (<xref ref-type="bibr" rid="B78">78</xref>), and cluster of differentiation 47 (CD-47) (<xref ref-type="bibr" rid="B79">79</xref>) pathways with desirable physicochemical properties and exposure upon oral administration. It is worth noting that small molecules with dual immune checkpoint inhibition have only been reported from the amino-acids-inspired interface mimic approach.</p>
</sec>
</sec>
<sec id="s6">
<title>Characterization of Binding to PD-L1 and Prevention of PD1:PD-L1 Complex Formation</title>
<p>Most reported small molecule inhibitors of PD-L1 have been extensively characterized for binding to PD-L1 in various biophysical and biochemical assays using extracellular domain of PD-L1 from heterologous expression system. Scientists from BMS were the first to report biphenyl compounds identified using a homogenous time-resolved fluorescence (HTRF)-based binding assay in order to screen and rank their ability to inhibit PD-1:PD-L1 complex formation (<xref ref-type="bibr" rid="B80">80</xref>). Based on BMS scaffold, several molecules up to sub-nanomolar binding potency in HTRF assays have now been reported both from the industry and academia (<xref ref-type="bibr" rid="B39">39</xref>, <xref ref-type="bibr" rid="B41">41</xref>, <xref ref-type="bibr" rid="B79">79</xref>, <xref ref-type="bibr" rid="B81">81</xref>). Direct binding of biphenyl compounds such as BMS compound 37 to PD-L1 has been demonstrated <italic>via</italic> SPR and ELISA-based assays (<xref ref-type="bibr" rid="B82">82</xref>). Using such biophysical techniques, it was observed that the amino-acids-inspired interface mimic CA-170 did not show observable binding to either PD-L1/PD-1 or inhibition of the PD-1:PD-L1 interaction while acknowledging the key differences in the &#x201c;expressed&#x201d; proteins and real-life interacting proteins as expressed on the surface of T cells and APCs (<xref ref-type="bibr" rid="B82">82</xref>).</p>
<p>The binding of biaryl scaffold-based compounds from BMS using three independent binding assays was demonstrated using DSF, MST, and SPR techniques and the concentration-dependent inhibitory activity in the PD-1/PD-L1-based biochemical ELISA (<xref ref-type="bibr" rid="B83">83</xref>). A higher affinity for BMS macrocycle peptide, which contains hydrophobic amino acids as compared to BMS biaryl scaffold compounds, was reported in DSF. However, the results of high affinity for macrocycles in DSF assay are interpreted with a caution due to the different physicochemical properties of macrocyclic peptide. In a similar assay, the binding affinity of BMS compounds has also been established by MST assays using fluorescent-labeled PD-L1 protein instead of label-free PD-L1 protein as used for DSF for incubation with test compounds.</p>
<p>The recent understanding of C<sub>2</sub> symmetric compounds targeting both hydrophobic cleft and polar groups in PD-L1 revealed that symmetric compounds have a better binding in HTRF assays as compared to asymmetric compounds. The C<sub>2</sub>-symmetric inhibitor LH1306 (IC<sub>50</sub> = 25 nM) was reported to be 3.8-fold more potent than its asymmetric counterpart (<xref ref-type="bibr" rid="B42">42</xref>). In this study, authors also illustrated the importance of 1,1&#x2032;-1,1&#x2032;-biphenyl core by comparing the core generated with 1,4- or 1,3-phenylene and 1,4- or 2,6-naphthalenylene analogues (micromolar binding activity). The importance of symmetric architecture for PD-L1 inhibitors was demonstrated with the compound, ARB 272542 (<xref ref-type="bibr" rid="B44">44</xref>), which inhibited PD-1/PD-L1 in a cell-free HTRF at 400 pM IC<sub>50</sub> compared to 200 pM (anti-PD-L1 antibody, MIH1) and 200 pM (anti-PD-1 antibody, nivolumab). Incyte compounds with asymmetric and symmetric structure were analyzed by Liu et&#xa0;al., and data further confirmed that C<sub>2</sub> symmetric compound (Incyte 011, 5.3 nM) was almost twice as potent as its asymmetric form (11 nM) (<xref ref-type="bibr" rid="B84">84</xref>).</p>
<p>NMR has been extensively used to characterize the binding of reported PD-L1 inhibitors to PD-L1. Prof. Holak and colleagues initially reported SAR-by-NMR approach to demonstrate the direct binding of BMS compounds to PD-L1. In this method, <sup>15</sup>N-labeled PD-L1 was titrated with increasing amount of tested compound, and signals were monitored using 2D <sup>1</sup>H-<sup>15</sup>N heteronuclear multiple quantum coherence (HMQC) NMR experiment. Significant shifts in the correlation NMR signals of PD-L1 upon addition of each tested compound documented their direct binding to PD-L1 (<xref ref-type="bibr" rid="B85">85</xref>). The ability of BMS-202 to disrupt PD-1/PD-L1 interaction was further demonstrated in a new antagonist-induced dissociation assay NMR screen, called AIDA-NMR (<xref ref-type="bibr" rid="B85">85</xref>, <xref ref-type="bibr" rid="B86">86</xref>). In this method, <sup>15</sup>N labeled PD-1 was initially titrated with slight excess of non-labeled PD-L1 so that no further changes in the linewidth of the 1<sup>H</sup>-<sup>15</sup>N resonance peaks was observed as monitored by HMQC. The addition of test compounds inhibiting interaction or dissociation of this preformed complex results in the narrowing of <sup>1</sup>H-<sup>15</sup>N signals. The NMR competition assay was further improvised, called weak-AIDA, for the fragment screening of weak binders using a low-affinity mutant of PD-1 (<xref ref-type="bibr" rid="B87">87</xref>). The weak-AIDA assay was conceptualized by introducing point mutations in the complex&#x2019;s protein that is not targeted by the inhibitor resulting in a low-affinity complex, thus allowing for short fragments to dissociate the complex. The method is illustrated using the compounds that block the Mdm2/X-p53 and PD-1/PD-L1 interactions (<xref ref-type="bibr" rid="B87">87</xref>). Among the various mutations attempted, Asn66 to Ala mutation was considered as the ideal mutation to generate mutant PD-1 protein due to its thermal stability as compared to native PD-1, retaining the overall structure and minimum interaction with the binding partner. This methodology was further utilized to determine the minimal fragment of BMS-1166 responsible for the PD-L1 binding (<xref ref-type="bibr" rid="B88">88</xref>). Although protein has been mutated at the asparagine position distant from the interacting site, considering the importance of asparagine residues in post-translational modifications, these variations may need to be checked with its impact in physiological environment (<xref ref-type="bibr" rid="B89">89</xref>). PD-1 is heavily glycosylated at Asn49, Asn 58, Asn 74, and Asn 116 in T cells, and Asn 58 is highly critical for PD-1/PD-L1 interaction (<xref ref-type="bibr" rid="B89">89</xref>) underscoring the need for structure analysis using the glycosylated protein. Given that glycosylation of PD-L1 (<xref ref-type="bibr" rid="B90">90</xref>) is also critical for binding to PD-1, it would be important to determine the structure of PD-1/PD-L1 binding using the glycosylated forms of these proteins in the future to better understand the interaction between PD-1 and PD-L1. The criticality of using protein with all appropriate post-translational modifications for interaction with reported ligands, especially those identified in cell-based assays, has been elegantly shown for the binding of a small molecule to p53 (<xref ref-type="bibr" rid="B91">91</xref>, <xref ref-type="bibr" rid="B92">92</xref>).</p>
<p>Published findings utilizing solution NMR (<xref ref-type="bibr" rid="B93">93</xref>) and other biophysical techniques (<xref ref-type="bibr" rid="B83">83</xref>) have indicated a lack of binding of the amino-acids-inspired interface mimic, CA-170 to PD-L1. The lack of conclusive binding in these studies may be due to the use of protein expressed in <italic>E. coli</italic> deficient in appropriate post-translational modifications and devoid of functional activity. To recapitulate the interaction as in the native environment, a cellular NMR spectroscopy using PD-L1-expressed mammalian cells in the native context along with the parental cell line as a negative control was utilized (<xref ref-type="bibr" rid="B19">19</xref>). Cell-based NMR spectroscopy is an ideal tool for studying the binding of macromolecules with a ligand under the physiological environment to obtain biologically relevant structural and functional information (<xref ref-type="bibr" rid="B94">94</xref>, <xref ref-type="bibr" rid="B95">95</xref>). This is achieved by monitoring the difference in the nuclear-spin relaxation or transverse relaxation (T<sub>2</sub>) rates of a small molecule ligand in the presence and the absence of the macromolecular targets such as cells (<xref ref-type="bibr" rid="B96">96</xref>). There is a huge difference in the rotational and translational motion of small molecule ligands and large molecule receptors. Small, rapidly tumbling molecules have much slower relaxation rates than slowly reorienting cells, and therefore, the T<sub>2</sub> of small molecules is generally large compared to the T<sub>2</sub> of large macromolecules or cells. This phenomenon is exploited to detect and characterize binding by measuring the T<sub>2</sub> values of the ligands in the absence and presence of the macromolecular targets like proteins or cells (<xref ref-type="bibr" rid="B96">96</xref>, <xref ref-type="bibr" rid="B97">97</xref>). The ligands associated with macromolecules or cells attain the NMR properties of macromolecules or cells. This is analogous to imagining a small molecule agent as an ant and a cell as an elephant and the ant sitting on top of the elephant moving with a speed of the elephant. Based on the different relaxation rates of small molecules and cells, the interaction of CA-170 to PD-L1 was confirmed in the cellular context using PD-L1 overexpressed CHO-K1 cells in comparison to blank CHO-K1 cells (<xref ref-type="bibr" rid="B19">19</xref>). The results from these studies demonstrate that the cellular NMR technique is sensitive in determining the complex binding mechanism in a physiologically relevant environment.</p>
</sec>
<sec id="s7">
<title>Characterization of Binding to PD-L2</title>
<p>Interestingly, despite a flurry of publications in the recent past, limited information is available regarding the interaction of small molecule agents reported to bind to PD-L1 for their binding to PD-L2. In one of the early publications, BMS compounds were evaluated for their interaction with PD-L2 (<xref ref-type="bibr" rid="B85">85</xref>). Data indicated their selective binding to PD-L1 and not to PD-L2. In view of the high degree of homology between PD-L1 and PD-L2, it would be of great interest to characterize newer biphenyl compounds including symmetric compounds with greater potency for their interaction with PD-L2.</p>
</sec>
<sec id="s8">
<title>Analysis of Functionality</title>
<p>In a simplistic view, because of the presence of domains of PD-L1 interacting with the small molecule agents outside of the cells, a good correlation for potency between binding leading to inhibition of PD-1:PD-L1 complex formation and functional assays is expected. However, it is worth noting that not all molecules with demonstrated binding to PD-L1 and/or capable of preventing PD-1:PD-L1 complex with high affinity have shown good activity in functional assays. Various assays utilized for functional characterization include measurement of impact on signaling components, e.g., the downstream transcription factor such as NFAT, using a luciferase-based reporter assay or signaling intermediate SHP-1 and primary T-cell-based assays in which proliferation or cytokine secretion is monitored in a set-up involving antigen recall or rescue from the inhibitory effect of PD-L1. Details of the most commonly used functional assays are summarized in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Most commonly used functional assays to monitor the impact of small molecule agents on PD-1 pathway.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Type of assay</th>
<th valign="top" align="center">Source for PD-1</th>
<th valign="top" align="center">Source for PD-L1</th>
<th valign="top" align="center">Consequence of interfering in the PD-1:PD-L1 interaction by small molecules </th>
<th valign="top" align="center">Detection system</th>
<th valign="top" align="center">Comments</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">NFAT reporter</td>
<td valign="top" align="left">Jurkat (immortalized line of human T cells) overexpressing PD-1 and luciferase gene controlled by the NFAT-response element</td>
<td valign="top" align="left">CHO-K1 (Chinese hamster ovary cells) cell line overexpressing PD-L1 and T-cell receptor activator</td>
<td valign="top" align="left">Activation of TCR signaling leading to greater luciferase expression</td>
<td valign="top" align="left">Chemiluminescence</td>
<td valign="top" align="left">Engineered cell line as T cells in the assay. Assay commercially available</td>
</tr>
<tr>
<td valign="top" align="left">SHP-1</td>
<td valign="top" align="left">Jurkat cells expressing PD-1 and SHP-1 each fused with different individually inactive fragments of the &#x3b2;-galactosidase</td>
<td valign="top" align="left">U-2 OS osteosarcoma cell line expressing PD-L1</td>
<td valign="top" align="left">Decrease in SHP-1 recruitment leading to lower &#x3b2;-galactosidase activity due to reduced enzyme fragment complementation</td>
<td valign="top" align="left">Chemiluminescence</td>
<td valign="top" align="left">Engineered cell line as T cells in the assay. Assay commercially available</td>
</tr>
<tr>
<td valign="top" align="left">PBMC</td>
<td valign="top" align="left">T cells activated by anti-CD3/anti-CD28</td>
<td valign="top" align="left">Recombinant protein</td>
<td valign="top" align="left">Activation of TCR signaling leading to the rescue of proliferation or cytokine release</td>
<td valign="top" align="left">FACS or ELISA</td>
<td valign="top" align="left">Primary T cells in the assay&#x2014;closer to physiological context</td>
</tr>
<tr>
<td valign="top" align="left">PBMC/whole blood</td>
<td valign="top" align="left">T cells activated by staphylococcal enterotoxin B (SEB) or CMV antigen</td>
<td valign="top" align="left">Other cells in PBMCs or blood; not controlled likely leading to greater variability in the assay</td>
<td valign="top" align="left">Activation of TCR signaling leading to the rescue of proliferation or cytokine release</td>
<td valign="top" align="left">FACS or ELISA</td>
<td valign="top" align="left">Primary T cells in the assay&#x2014;closer to physiological context</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s8_1">
<title>NFAT Reporter Assay</title>
<p>In most of the PD-L1 inhibitor publications, a co-culture assay in which CHO-K1 cells (of Chinese Hamster ovary origin) overexpressing PD-L1 and T-cell receptor activator with the effector Jurkat T cells overexpressing PD-1 and a luciferase gene controlled by the NFAT response  element has been used. In such a reporter assay, BMS-1001 and BMS-1166 restored the activation of Jurkat T cells, represented by an increase in luciferase activity (<xref ref-type="bibr" rid="B98">98</xref>). However, the potential of the compounds in restoring the activation of effector cells is significantly lower than that observed for the therapeutic antibodies and with lower maximal cell activation levels. Such drastic reduction in the potency of BMS compounds (<xref ref-type="bibr" rid="B83">83</xref>) and other derivatives based on the original BMS compounds (<xref ref-type="bibr" rid="B49">49</xref>) in the reporter assay has also been confirmed by several other groups (<xref ref-type="bibr" rid="B42">42</xref>, <xref ref-type="bibr" rid="B44">44</xref>, <xref ref-type="bibr" rid="B53">53</xref>, <xref ref-type="bibr" rid="B57">57</xref>, <xref ref-type="bibr" rid="B99">99</xref>). In a similar reporter assay system, CA-170, which rescues T cells from the inhibitory activity of PD-L1, did not show activity (<xref ref-type="bibr" rid="B93">93</xref>), while a low activity was observed (&lt;1.5 induction of reporter activity at doses ranging from 0.1 to 10 &#xb5;M) with the most potent small molecule capable (BMS-1166) of potently disrupting the interaction of PD-1:PD-L1 complex (IC<sub>50</sub> 7 nM in TR-FRET assay). In comparison, a significant activity was observed for macrocyclic peptide or nivolumab in the same study. Another biphenyl compound, L7, has also been reported to show significantly lower potency compared to its activity in HTRF-based biochemical assay for the disruption of PD-1-PD-L1 interaction (<xref ref-type="bibr" rid="B99">99</xref>). Interestingly, the more potent two C<sub>2</sub>-symmetric inhibitors LH1306 and LH1307, with IC<sub>50</sub> value of 25 and 3 nM, respectively, dose dependently released the PD-1-mediated inhibition of PD-1-expressing Jurkat T cells and induced the activity of luciferase with EC<sub>50</sub> values of 4.2 and 0.76 &#xb5;M, respectively, and the asymmetric version of LH1306 was inactive (<xref ref-type="bibr" rid="B42">42</xref>). Similarly, ARB-272572, another symmetric molecule with potent activity (400 pM IC<sub>50</sub>) in PD-1/PD-L1 HTRF showed significantly lower potency (&gt;40-fold less in the reporter assays, whereas anti-PD-L1 and anti-PD-1 antibodies showed comparable potency in binding and reporter assays (<xref ref-type="bibr" rid="B44">44</xref>). Taken together, the available data suggest that the reporter assay system, which is far removed from the physiological context, may not be ideally suited for characterizing all classes of small molecule inhibitors.</p>
</sec>
<sec id="s8_2">
<title>SHP-1 Signaling Assay</title>
<p>Another heterologous functional assay based on the enzyme fragment complementation technology, the commercial PathHunter cell-based PD-1 (SHP-1) signaling assay, has also been used to investigate the potency of PD-L1 inhibitors. This assay utilizes a stable, engineered cell line with enzyme fragment complementation technology for use in studying drug candidates targeting PD-1/PD-L1 pathway. In this assay format, symmetric compounds LH1306 and LH1307 demonstrated 8.2-fold (EC<sub>50</sub>, 334 nM) and 2.8-fold (EC<sub>50</sub>, 79 nM) more activity as compared to their asymmetric analogues in commercial PathHunter cell-based PD-1 (SHP-1) signaling assay underscoring the need for C<sub>2</sub>-symmetry for optimal functionality (<xref ref-type="bibr" rid="B42">42</xref>). However, it is important to note that as in the NFAT reporter assay, the potency of the compounds in the SHP-1 signaling assay was ~10-fold lower compared their potency in PD-1:PD-L1 disruption.</p>
</sec>
<sec id="s8_3">
<title>Primary T-Cell-Based Assay</title>
<p>Only a limited number of publications report the characterization of biphenyl compounds in the primary T-cell-based assays. In a peripheral blood mononuclear cell (PBMC)-based assay, BMS-202, one of the early biphenyl compounds with poor cellular activity in the NFAT reporter assay (<xref ref-type="bibr" rid="B53">53</xref>), showed significant rescue of interferon gamma (IFN-&#x3b3;) secretion inhibited by PD-L1 at a lower concentration (100 nM) similar to another biphenyl compound, Compound 58 (<xref ref-type="bibr" rid="B54">54</xref>). The biphenyl compound B2 has been shown to induce IFN-&#x3b3; secretion from the lymph node T cells co-cultured with LLC cells and rescue the inhibition of IFN-&#x3b3; secretion from PD-L1 of PBMC treated with anti-CD3/anti-CD28, with a potency similar to that observed in biochemical assay for the disruption of PD-1/PD-L1 interaction (<xref ref-type="bibr" rid="B56">56</xref>). During the discovery of amino-acid-inspired interface mimic CA-170, a PBMC-based function assay monitoring the rescue of T cells from the inhibitory activity of PD-L1 in inducing proliferation and cytokine secretion was extensively used. In this assay, CA-170 shows the Emax and potency similar to those observed with an anti-PD1 antibody (<xref ref-type="bibr" rid="B19">19</xref>). A functional assay in a similar format was recently employed to establish equipotent functional activity as in biochemical assays of modified biphenyl compound, Compound B2, from researchers of Nanjing University and China Pharmaceutical University (<xref ref-type="bibr" rid="B56">56</xref>).</p>
<p>It is important to note that not all studies have reported a good correlation between biochemical and PBMC-based functional assays. For example, Compound 24, a biphenyl asymmetric molecule, showed about 30-fold lower activity in PBMC-based tumor cell line (MDA-MB231) killing assay (Wang 2021). In a co-culture assay using 293T-OS8-hPDL1 cells, and CD3 + T cells, Incyte-011, a symmetric compound, increased IFN-&#x3b3; production in a dose-dependent manner and reached the peak at the maximum dose of 1 &#x3bc;M, indicating a significant attenuation relative to its biochemical activity (IC<sub>50</sub> of 5 nM in HTRF assay), whereas the asymmetric compound Incyte-001 and BMS compounds were not active in this assay. In the same assay, the control PD-L1 antibody atezolizumab was highly active, with IFN-&#x3b3; production reaching up to 350 pg/ml at 5 nM concentration (<xref ref-type="bibr" rid="B84">84</xref>).</p>
<p>Based on the observation that PD-1 antibodies have been shown to upregulate T-cell responses in response to superantigens such as staphylococcal enterotoxin B (SEB) or cytomegalovirus (CMV) antigens, these assays have also been utilized for the characterization of PD-L1 agents. In the SEB-induced PBMC assays, to monitor proliferation and secretion of IL-2 or IFN-&#x3b3; production, BMS small molecule compounds showed activity only at micromolar concentration, while BMS macrocyclic peptide induced high levels of IL-2 at sub-micromolar concentrations (<xref ref-type="bibr" rid="B83">83</xref>). In a separate study, a symmetric compound, ARB-272572, that demonstrated activity in an NAFT reporter assay of 17 nM IC<sub>50</sub> displayed a potency of 3 nM in CMV antigen recall assay, still a significant drop-off in the potency relative to that observed in biochemical activity (400 pM IC<sub>50</sub> in a cell-free HTRF assay) (<xref ref-type="bibr" rid="B44">44</xref>).</p>
<p>Among all the functional assays employed, the best correlation with biochemical potency was observed for selected biphenyl compounds using primary T cells with PBMCs as the source and in the presence of PD-L1. Interestingly, CA-170, which failed to exhibit activity in HTRF based PD-1:PD-L1 disruption and NFAT-reporter-based functional assay, was highly active in the PBMC-based assays, which has now translated into immune activation observed in the clinic (<xref ref-type="bibr" rid="B100">100</xref>). Taken together, these findings raise the possibility of PBMC/primary T-cell-based assays, which are used to monitor rescue from the inhibitory activity of PD-L1, in which the addition of PD-L1 brings in the specificity, as the most relevant assay to analyze the immune activation potential of small molecule PD-L1 agents. While this possibility needs to be validated further, it may not be entirely surprising considering that PD-1:PD-L1 interaction is studied in a setup that is a lot closer to the physiological and therapeutic context. It is also important to note that in the PBMC-based assay format, the substitution of human PBMCs with monkey PBMCs or mouse splenocytes along with PD-L1 of monkey or mouse origin allows to evaluate the cross-species functional activity (<xref ref-type="bibr" rid="B19">19</xref>).</p>
<p>In the cellular pharmacology studies using human T cells and the rescue of inhibition by PD-L1, both CA-170 and anti-PD-1 antibodies showed a bell-shaped T-cell activation response (<xref ref-type="bibr" rid="B101">101</xref>). In these assays, optimal T-cell activation occurs between concentrations of 125&#x2013;500 nM beyond which there is a substantial reduction in the activity. Such inverse dose response has also been observed <italic>in vivo</italic> in tumor models with a series of novel benzo[c][1,2,5]oxadiazole derivatives with potent PD-L1 binding and functional activity (<xref ref-type="bibr" rid="B99">99</xref>). An inverse dose response was observed with PD-L1-humanized MC38 model, in which compound L24 exhibited significant antitumor efficacy in this model, with 25 mg/kg (TGI 44.2%) exhibiting higher efficacy compared to a higher dose of 50 mg/kg (TGI 30.8%). The likely cause for such a bell-shaped response is the hyperactivation of the immune system leading to activation-induced T-cell death (<xref ref-type="bibr" rid="B102">102</xref>), which is detrimental to the effect of the drug.</p>
</sec>
<sec id="s8_4">
<title>Functional Antagonism of PD-L2</title>
<p>Among the reported small molecule agents binding and interfering in the function of PD-L1, CA-170 has also been shown to functionally antagonize signalling from PD-L2 (<xref ref-type="bibr" rid="B19">19</xref>). In human PBMC or mouse splenocyte-based assays, CA-170 has shown dose-dependent rescue of inhibition of proliferation or cytokine secretion in the presence of either PD-L1 or PD-L2. The&#xa0;potency of CA-170 in these assays for functional antagonisms were similar to that observed with commercially available anti-PD1 antibodies (<xref ref-type="bibr" rid="B19">19</xref>), which are known to antagonize signaling originated from either PD-L1 and PD-L2. Unlike PD-L1, the expression of PD-L2 is mainly restricted to professional antigen-presenting cells (APCs) like macrophages and dendritic cells (DCs) and more commonly upregulated in lymphoid malignancies (<xref ref-type="bibr" rid="B103">103</xref>). Studies have also indicated that the expression of PD-L2 is independently associated with clinical response in pembrolizumab (anti-PD1)-treated patients, supporting that the presence or absence of PD-L2 expression may also play a role in response to PD-1 axis targeted therapies (<xref ref-type="bibr" rid="B104">104</xref>). The consequence of selective inhibition of PD-L1 versus dual inhibition of both PD-L1 and PD-L2 needs to be characterized, specifically in view of greater apparent clinical efficacy of anti-PD1 antibodies capable of blocking signals that originated both from PD-L1 and PD-L relative to the efficacy from anti-PD-L1 antibodies.</p>
</sec>
</sec>
<sec id="s9">
<title>Mechanism Of Action of the Reported Small Molecule Compounds Targeting PD-L1</title>
<p>Even though the functional antagonism of the PD-1 pathway is anticipated from a compound capable of binding to one of the partner in the PD-1:PD-L1 complex and preventing the interaction, emerging data point to additional complexity with which reported compounds antagonize the PD-1 signaling.</p>
<sec id="s9_1">
<title>Induction of PD-L1 Dimerization and Inhibiting PD-1:PD-L1 Interaction</title>
<p>The detailed characterization of PD-L1 targeting compounds originally described by the BMS group was carried out by Prof. Holak and colleagues, and they have extensively published on the mechanism of action, binding mode based on X-ray structure determination, confirmation of binding, and functionality by various methods (<xref ref-type="bibr" rid="B35">35</xref>). One of their major contributions to the field is in identifying the molecular details of the human PD-1/PD-L1 interaction using X-ray structure of hPD-1:PD-L1 complex, which led to the identification of three hotspot pockets in PD-L1, the binding of which can lead to inhibition of PD-1:PD-L1 interaction (<xref ref-type="bibr" rid="B35">35</xref>). Among these pockets, two are rich in hydrophobic amino acids with considerable hydrophobicity and one in hydrophilic amino acids. The direct binding of BMS compounds to PD-L1 <italic>via</italic> NMR assays and the structural basis for these compounds (BMS-8 and BMS-202) in targeting PD-L1 were delineated (<xref ref-type="bibr" rid="B85">85</xref>). Using crystal structure studies, it was demonstrated that these compounds inhibit the PD-1:PD-L1 interaction by inducing PD-L1 dimerization through PD-1 interacting surface. The BMS compounds reported in these studies were targeted to the reported hydrophobic hotspots 1 and 2. In a subsequent publication, the same group also reported that BMS compounds, specifically BMS-200, based on 2,3-dihydro-1,4-benzdioxinyl group induced an enlarged interaction interface that results in the open &#x201c;face-back&#x201d; tunnel through the PD-L1 dimer (<xref ref-type="bibr" rid="B38">38</xref>). This result indicates that BMS-200 induces conformational changes in PD-L1, and the ligand binding site of PD-L1 to be more flexible than it was previously seen. The crystal structure of the less cytotoxic compounds (BMS-1001 and 1166) from the BMS compounds series indicated that the deep hydrophobic pocket harboring BMS-202 is transformed into a tunnel in the PD-L1/BMS-1166 structure by rotation of the Tyr56 sidechain, which may be responsible for increased potency of the compounds compared to their predecessors (<xref ref-type="bibr" rid="B98">98</xref>). Using multiple molecular modeling methods, computational insights into the small molecule induced PD-L1 dimerization, suggesting the tendency of BMS small-molecule inhibitors to interact with one PD-L1 monomer first followed by dimer formation for an advantage of stability has been provided (<xref ref-type="bibr" rid="B105">105</xref>).</p>
<p>The more active (in both binding and functional assays) C<sub>2</sub>-symmetic inhibitor Compound LH1307 was found to extend across the AFGCC&#x2019; faces of the PD-L1 proteins, forming an extended hydrophobic tunnel through the PD-L1 homodimer (<xref ref-type="bibr" rid="B42">42</xref>). In this molecule, the biphenyl moiety helped in anchoring the compound in the hydrophobic core of the homodimer, while the polar groups in the solvent exposed helped in bringing the two PD-L1 monomers through a network of hydrogen bonds and electrostatic interactions with the polar residues on the AB and CC&#x2019; strands of the PD-L1. Greater potency of such symmetrical compound was due to the binding two equivalent sites in the PD-L1 homodimer by virtue of its C<sub>2</sub>-symmetric nature (<xref ref-type="bibr" rid="B42">42</xref>). Incyte and Arbutus have also utilized the inherent C2-symmetry in the PD-L1 dimer by symmetrizing their molecules to achieve greater potency (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>).</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Two distinct mechanisms leading to functional antagonism with reported small molecule PD-L1 inhibitors.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-752065-g006.tif"/>
</fig>
<p>A recent review (<xref ref-type="bibr" rid="B106">106</xref>) summarizes the phenomenon of drug-induced protein dimerization, as the mechanism to modulate the target activity is not unique to PD-L1. Other examples of drug-induced protein homodimer stabilization include compounds that stabilize Max and TLR2 homodimers. In these examples, the same dimer sequestration principle occurs with the compounds, which shape an interfacial binding tunnel between two monomeric protein units. Interestingly, compounds used to promote homo-dimerization of matrix metalloproteinases for crystallographic studies also include a biphenyl unit (<xref ref-type="bibr" rid="B107">107</xref>).</p>
</sec>
<sec id="s9_2">
<title>Blocking of PD-L1 Export From Endoplasmic Reticulum to Golgi</title>
<p>A cellular mechanism for the functional antagonism of the biphenyl compound BMS-1166 based on the role of glycosylation on the critical residues of PD-L1 protein has also been proposed (<xref ref-type="bibr" rid="B108">108</xref>). The four N-glycosylation sites (Asn35, Asn192, Asn 200, and Asn 219) present in the extracellular domain of PD-L1 is necessary for the stability of ligand protein, and except Asn 35, all other glycosylation sites are critical for its interaction with receptor (<xref ref-type="bibr" rid="B90">90</xref>, <xref ref-type="bibr" rid="B109">109</xref>). BMS-1166 partially and specifically inhibits PD-L1 glycosylation and functionally inactivates PD-L1 by blocking its export from the endoplasmic reticulum to Golgi (<xref ref-type="bibr" rid="B108">108</xref>). It is not known if the newer C<sub>2</sub> symmetric compounds also have an impact on PD-L1 by this mechanism.</p>
</sec>
<sec id="s9_3">
<title>Induction of PD-L1 Dimerization and Internalization</title>
<p>Induction of a two-step internalization process as the mechanism of action for a C<sub>2</sub>-skeleton biphenyl compounds has recently been published by the Arbutus group (<xref ref-type="bibr" rid="B44">44</xref>). In this process, Compound ARB-272572 inhibits the PD-1/PD-L1 axis by inducing cell surface PD-L1 dimerization <italic>via</italic> cis-interacting homodimers triggering a rapid loss of cell surface PD-L1 by rapid internalization into the cytosol, thereby preventing any further interaction with PD-1-expressing cell types. The formation of homodimer as illustrated by a crystal structure where ARB 272542 (<xref ref-type="bibr" rid="B44">44</xref>) bound within a hydrophobic pocket created between two PD-L1 proteins followed by rapid internalization into the cytosol is reported to be the primary mechanism contributing to cellular potency. Similar to the publication by Arbutus, Incyte had previously described inhibitor-induced internalization, but the structure of the specific compound was not revealed (<xref ref-type="bibr" rid="B110">110</xref>). Apart from the clinical candidate, Incyte also reported INCB-090244, which binds and internalizes surface PD-L1 <italic>in vivo</italic> in a dose-dependent manner, and orally dosed INCB-090244 exhibits single agent activity and increases infiltrating T cells in two distinct humanized mouse models (<xref ref-type="bibr" rid="B110">110</xref>). Although the induction of PD-L1 internalization has been reported only with C<sub>2</sub>-symmetric molecules., it is not clear if the C<sub>2</sub> symmetry and the resulting interaction are prerequisites for inducing internalization.</p>
<p>In the mechanism of action of PD-L1 inhibitor that induces internalization, PD-L1 is no longer available on the cell surface not only to interact with its cognate receptor PD-1 but also for its other reported binding partner Cluster of Differentiation 24 (CD80) (<xref ref-type="bibr" rid="B111">111</xref>). This may have unwanted consequences based on the reported finding indicating that PD-L1 also exerts an immunostimulatory effect by repressing the CTLA-4 pathway (<xref ref-type="bibr" rid="B112">112</xref>). The reduced cell surface PD-L1 levels could lead to greater availability of CD80 to its cognate receptor CTLA-4 leading to immune suppression. Hence, the disappearance of PD-L1 on the cell surface because of the internalization and its functional consequence may need to be studied further, as the checkpoint biology is still emerging (<xref ref-type="bibr" rid="B113">113</xref>).</p>
</sec>
<sec id="s9_4">
<title>Binding to PD-L1 Without Interference in the PD1:PD-L1 Complex Formation</title>
<p>Lack of binding of amino-acids-inspired interface mimic CA-170 to either PD-1 or PD-L1 or disruption of PD-1:PD-L1 complex in various biophysical and biochemical assays has been discussed in the literature along with postulating alternative unknown mechanism of action for these compounds (<xref ref-type="bibr" rid="B82">82</xref>, <xref ref-type="bibr" rid="B83">83</xref>, <xref ref-type="bibr" rid="B93">93</xref>). In view of the use of proteins expressed in heterologous expression systems lacking appropriate post-translational modifications, recently, the binding of CA-170 to PD-L1 has been established by cellular NMR spectroscopy using full-length PD-L1 expressed in mammalian cells (<xref ref-type="bibr" rid="B19">19</xref>). Compared to the biphenyl-based small molecule inhibitors (<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B98">98</xref>), CA-170 is highly polar and thus likely interacts with PD-L1 at a solvent exposed region. Observed functional antagonism in PD-L1 signaling and direct binding to PD-L1 in the cellular context without the disruption of the PD1:PD-L1 complex support the formation of a defective ternary complex as the mechanism of action of CA-170 (<xref ref-type="bibr" rid="B19">19</xref>) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). This mode of action of CA-170 is analogous to that of two reported anti-PD1 antibodies that antagonize PD-1 signaling without interfering in PD-1:PD-L1 complex formation (<xref ref-type="bibr" rid="B114">114</xref>, <xref ref-type="bibr" rid="B115">115</xref>).</p>
</sec>
</sec>
<sec id="s10">
<title>Clinical Development of PD-1 Small Molecule Inhibitors</title>
<p>CA-170 was the first orally available small molecule PD-L1 inhibitor to enter the clinical trials in 2016, and it is currently in Phase 2b/3 trials (co-development by Curis and Aurigene). The clinical trials of Incyte compound INCB-086550 was initiated in 2018, and Phase 1 is expected to be completed by 2022. The details of all small molecule agents in the clinic with most recent findings are consolidated in <xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>.</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Details of small molecules in clinical trials.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Sl. no.</th>
<th valign="top" align="center">Drug/company </th>
<th valign="top" align="center">Dosing</th>
<th valign="top" align="center">Indications</th>
<th valign="top" align="center">Current status</th>
<th valign="top" align="center">Details of recent status</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="2" align="left">1</td>
<td valign="top" align="left">
<bold>CA-170</bold>
</td>
<td valign="top" rowspan="2" align="left">50 mg QD to 1,200 mg</td>
<td valign="top" rowspan="2" align="left">Lymphoma; advanced solid tumors</td>
<td valign="top" rowspan="2" align="left">Phase 2b/3</td>
<td valign="top" align="left">In Phase 2 studies, ORR of 30% in classical Hodgkin lymphoma (based on Lugano criteria) and a CBR of &gt;85% at a daily dose of 400 mg and PFS of 19.6 weeks in advanced (stage 4) non-squamous NSCLC (<xref ref-type="bibr" rid="B101">101</xref>) CTRI/2017/12/011026</td>
</tr>
<tr>
<td valign="top" align="left">Aurigene/Curis</td>
<td valign="top" align="left">Phase2b/3 studies: Phase 2b/3 randomized study of CA-170 in patients with non-squamous non-small cell lung cancer CTRI/2020/07/026870</td>
</tr>
<tr>
<td valign="top" rowspan="4" align="left">2</td>
<td valign="top" align="left">
<bold>INCB-086550</bold>
</td>
<td valign="top" rowspan="4" align="left">QD (100, 200 mg) or BID (200, 400 mg).</td>
<td valign="top" align="left">NSCLC urothelial cancer</td>
<td valign="top" rowspan="4" align="left">Phase 2</td>
<td valign="top" align="left">Phase 1 Study Exploring the Safety, Tolerability, PK and PD (NCT03762447).</td>
</tr>
<tr>
<td valign="top" align="left">Incyte Corp</td>
<td valign="top" align="left">Renal cell carcinoma</td>
<td valign="top" align="left">A dose-related 1.2-fold increase in the plasma concentration of soluble target (PD-L1); 3.4-fold increase in IFN- &#x3b3;; 1.3- and 1.4-fold of CXCL9 and CXCL10, observed post-treatment (<xref ref-type="bibr" rid="B116">116</xref>, 086550).</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left"/>
<td valign="top" align="left">Hepatocellular carcinoma</td>
<td valign="top" rowspan="2" align="left">Phase 2: Open-label, non-randomized study to evaluate the efficacy and safety (NCT04629339); INCB-086550 will be administered orally twice a day.</td>
</tr>
<tr>
<td valign="top" align="left">Melanoma</td>
</tr>
<tr>
<td valign="top" rowspan="3" align="left">3</td>
<td valign="top" align="left">
<bold>MX-10181</bold>
</td>
<td valign="top" rowspan="3" align="left">Dose not disclosed</td>
<td valign="top" rowspan="3" align="left">Advanced solid tumor; cancer</td>
<td valign="top" rowspan="3" align="left">Phase 1</td>
<td valign="top" align="left">In February 2021, an implied trial approval was granted for advanced solid tumor.</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">Maxinovel Pharma</td>
<td valign="top" align="left">Part 1: Dose escalation, MAX-10181 once or twice daily with dose modifications based on tolerability criteria.</td>
</tr>
<tr>
<td valign="top" align="left">Part 2: Dose expansion, Recommended doses from Part 1 (NCT04122339).</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">4</td>
<td valign="top" align="left">
<bold>GS-4224</bold>
</td>
<td valign="top" rowspan="2" align="left">Starting at 400 mg once a day (QD). Subsequent doses of 700 mg QD, 1,000 mg QD, 1,500 mg QD, and 1,000 mg twice a day (BID)</td>
<td valign="top" rowspan="2" align="left">Advanced solid tumor; Hepatitis B virus infection</td>
<td valign="top" rowspan="2" align="left">Phase 1</td>
<td valign="top" rowspan="2" align="left">In March 2021, Gilead Sciences terminated a phase Ib/II trial to evaluate the safety, tolerability, pharmacokinetics, and efficacy of GS 4224 in patients with advanced solid tumors (NCT04049617).</td>
</tr>
<tr>
<td valign="top" align="left">Gilead Sciences</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">5</td>
<td valign="top" align="left">
<bold>IMMH-010</bold>
</td>
<td valign="top" rowspan="2" align="left">Starting at 60 mg QD. Subsequent doses of 120, 240, and 360 mg QD</td>
<td valign="top" rowspan="2" align="left">Malignant neoplasms</td>
<td valign="top" rowspan="2" align="left">Phase 1</td>
<td valign="top" align="left">Trial approved in April 2020 and the study is not yet recruited.</td>
</tr>
<tr>
<td valign="top" align="left">Tianjin Chasesun Pharmaceutical Co., LTD</td>
<td valign="top" align="left">To determine MTD and RP2D and to evaluate the effects of food on the pharmacokinetic profiles after single dose of IMMH-010 in patients with advanced solid tumors (NCT04343859).</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s10_1">
<title>Considerations in Small Molecule Clinical Development</title>
<p>Several unique features of small molecule agents targeting PD-L1 compared to antibodies against PD-1 and PD-L1 emphasize the potential need to adapt strategies that are different than those that have worked well for approved PD-1 and PD-L1 antibodies. Target engagement analysis in circulation that is widely used for antibody-based therapeutics may not work for small molecule reversible agents because of their distinct binding kinetics including faster off-rate. In the absence of the direct target engagement, dose selection for expansion studies my need to be decided based on the exposure and its correlation with pharmacodynamic effects observed in both preclinical and clinical setting.</p>
<p>Because of the substantially smaller size of small molecule PD-L1 agents, a significantly higher number of molecules (300&#xb4; or more) are delivered compared an antibody-based agents at the same dosage level. If the potency of a small molecule PD-L1 agent is similar to anti-PD-1/PD-L1 antibody in primary T-cell-based functional assays, specifically in the rescue of inhibition by PD-L1 (as has been shown for amino-acids-inspired interface mimic CA-170 and several biphenyl derivatives), it is important to think through the consequence of achieving very high molar exposure in the clinic relative to antibodies. As discussed earlier in this article, because of the observed bell-shaped T-cell activation response in preclinical studies, the conventional approach in oncology such as first determining the maximum tolerated dose (MTD), followed by dose expansion at the MTD, may not be ideal and in fact may be highly counterproductive for an immune-activating agent.</p>
<p>Classically, dose&#x2013;response to drugs is generally considered to be sigmoidal in nature where the biological effect increases linearly with dose until the threshold concentrations whereby inhibition proceeds in a linear fashion until saturation is achieved. However, there are examples in various classes of drugs where the dose&#x2013;response curve deviates from the sigmoidal curve and exhibits a hormetic (bell-, U-, or J-shaped) dose&#x2013;response. A classic example of bell-shaped clinical response for an immunomodulating agent was reported for IFN-&#x3b3; several decades ago with efforts that resulted in identifying optimal immunomodulatory dose (OID) (<xref ref-type="bibr" rid="B117">117</xref>). Preclinical and clinical studies have suggested that the OID of may not be the clinical MTD (<xref ref-type="bibr" rid="B118">118</xref>&#x2013;<xref ref-type="bibr" rid="B120">120</xref>). Hence, the clinical trials carried out with IFN-&#x3b3; at MTD resulting in low response rate was attributed to failure in treating the patients at an optimal OID. Such bell-shared clinical response has also been noted with small molecule immunotherapeutic agents such as STING agonists (<xref ref-type="bibr" rid="B121">121</xref>) or TLR agonists (<xref ref-type="bibr" rid="B122">122</xref>). It is also worth noting that a bell-shaped clinical response has also been reported for anti-PD1 antibody nivolumab (<xref ref-type="bibr" rid="B123">123</xref>, <xref ref-type="bibr" rid="B124">124</xref>), a finding that is not widely highlighted.</p>
<p>Clinical exposure-efficacy data of small molecule PD-L1 agents are slowly unfolding, and they indicate an inverse dose relationship in efficacy. Radhakrishnan et&#xa0;al. reported the clinical benefit for CA-170 at a dosage of 400 mg QD compared to 800 mg QD dose (<xref ref-type="bibr" rid="B101">101</xref>). Analysis of safety profile of the drug also indicated higher incidence of irAEs at the lower dosage of 400 mg. Additionally, there was a strong overall trend of improved CBR and PFS with 400 mg when compared to the higher dose (800 mg) in both lung cancer and Hodgkin lymphoma. These agree with preclinical findings showing a bell-shaped curve of immune activation likely due to activation-induced cell death with CA-170 (discussed earlier in this article). Observed clinical activity of CA-170 at lower dose is also consistent with the exposure achieved at optimal dose of 10 mg/kg in preclinical models (<xref ref-type="bibr" rid="B19">19</xref>). A recent preclinical study also reported potent anticancer efficacy of CA-170 at a dose of 10 mg/kg in carcinogen-induced mouse lung tumorigenesis model (<xref ref-type="bibr" rid="B20">20</xref>). Clinical efficacy data are not yet reported for INCB-086550, but peripheral pharmacodynamic activity in Phase 1 studies is reported for a low dose (100, 200 mg QD dosing or 200, 400 mg BID dosing), and Phase 2 dosing is currently ongoing (dosage not disclosed) orally twice a day.</p>
<p>The clinical and preclinical data of CA-170 discussed here highlight the need to adjust the optimal immunomodulatory dose for attaining clinical efficacy. In the absence of any tolerability issues, the recommended Phase 2 dose (RP2D) for a small molecule PD-L1 agent is likely the dose that achieves a reliable immune response/pharmacodynamics (assessed by monitoring T cells or other immune cells in the tumor microenvironment) and hints of clinical efficacy or exposure that shows anti-tumor efficacy in preclinical models. Further studies on the dose&#x2212;efficacy relationship and the underlying mechanisms need to be understood further to achieve complete benefit of these agents in clinic.</p>
<p>Since most of the reported small molecule inhibitors target PD-L1 as opposed to PD-1, with the exception of limited reports (<xref ref-type="bibr" rid="B125">125</xref>), clinical indications in which anti-PD-L1 antibodies have shown good efficacy could be more appropriate for PD-L1 small molecule agents. Unlike PD-1 antibodies that block signaling from both PD-L1 and PD-L2, PD-L1 antibodies do not impact PD-L2 signaling. On the other hand, PD-L1 antibodies also block the interaction of PD-L1 with CD80. Even though there is a significant overlap in the approved clinical indications for PD-1 antibodies versus PD-L1 antibodies, there are specific indications including Hodgkin lymphoma, head and neck cancer, and colorectal cancers in which only PD-1 antibodies are approved. In the absence of head-to-head comparison and the dependence on cross-study comparisons, it is not clear if these differences are due to differential biology expected from PD-1-targeted agents versus those targeting PD-L1. However, these points may need to be taken into consideration during the development of PD-L1-targeted agents.</p>
</sec>
</sec>
<sec id="s11" sec-type="conclusions">
<title>Conclusions and Future Perspectives</title>
<p>With the realization that small molecule agents targeting PD-1:PD-L1 immune checkpoint pathway offer distinct advantages, there has been a burst of publications describing several agents targeting PD-L1. Interestingly, while most of these agents interact with PD-L1 and result in the desired phenotype, there has been limited report(s) of small molecule agents binding to PD1 or both PD1 and PD-L1. Because of several elegant studies, the mechanisms of action of PD-L1 agents are unravelling, but we still do not know if targeting PD-1 would be more advantageous. While most of the reported agents derived from the biphenyl scaffold perform very well in the binding and PD-1:PD-L1 disruption assays by inducing dimerization of PD-L1, not all of them show potent functionality in cellular systems. Among the functional assays evaluated, PBMC or primary T-cell-based assays, specifically those in which rescue of inhibition by PD-L1 is monitored, show a better correlation with potency in biochemical assays for disruption of PD-1:PD-L1 interaction. Disconnection in several other functional assays is likely contributed by differences in which these molecules encounter the target on immune cells in a physiological context, which emphasizes the need to use appropriate functional assays in the discovery. Functional assays using primary T cells from human and preclinical species provide their cross-species activity and valuable information for clinical translation with respect to exposure that would likely lead to optimal immune activation. While there is substantial progress in identifying PD-L1 targeted small molecule agents, it is intriguing to note that not many have attempted to characterize the interaction of the reported PD-L1 agents with PD-L2. Similarly, the consequences of the binding to PD-L1 on PD-L1&#x2019;s interaction with CD80 are yet to be characterized for most of the reported PD-L1 agents. Ultimately, the utility of the PD-L1-targeted small molecule agents needs to be delineated by clinical studies, and in this regard, it is encouraging to note that clinical studies are progressing with a few of the molecules. Early clinical data suggest a need for a precise determination of the dose providing optimal immune activation for dose expansion without escalating it to MTD as typically followed for most cytotoxic or targeted oncology drugs. Clinical success with small molecule PD-L1 inhibitors either as a single agent or in combination with current standard of care is eagerly awaited towards fully harnessing this important therapeutic modality.</p>
</sec>
<sec id="s12" sec-type="author-contributions">
<title>Author Contributions</title>
<p>PS and MR performed the literature review and wrote the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s13" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>Authors are present or previous employees of Aurigene Discovery Technologies Limited. PS and MR are inventors on several patent applications related to immune checkpoint inhibitors described in this manuscript. MR is the CEO of Aurigene Discovery Technologies Limited, a company that is co-developing CA-170 for cancer therapy.</p>
</sec>
<sec id="s14" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
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