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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2022.1088850</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Transcriptomics and metabolomics analysis reveal the anti-oxidation and immune boosting effects of mulberry leaves in growing mutton sheep</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Cui</surname>
<given-names>Xiaopeng</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1553762"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Yuxin</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/803406"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Minjuan</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1363036"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Shuang</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1825790"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Hexin</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1824650"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jiao</surname>
<given-names>Feng</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/830021"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bao</surname>
<given-names>Lijun</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1349248"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lin</surname>
<given-names>Ziwei</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1824648"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wei</surname>
<given-names>Xinlan</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2154927/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qian</surname>
<given-names>Wei</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2156017"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shi</surname>
<given-names>Xiang</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2155028"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Su</surname>
<given-names>Chao</given-names>
</name>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1825204"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Qian</surname>
<given-names>Yonghua</given-names>
</name>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1824677"/>
</contrib>
</contrib-group>
<aff id="aff1">
<institution>College of Animal Science and Technology, Northwest A&amp;F University</institution>, <addr-line>Yangling, Shaanxi</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Guiyan Yang, University of California, Davis, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Xu Yang, Henan Agricultural University, China; Liyang Zhang, Henan Agricultural University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Chao Su, <email xlink:href="mailto:suchao503@126.com">suchao503@126.com</email>; Yonghua Qian, <email xlink:href="mailto:qyh@nwafu.edu.cn">qyh@nwafu.edu.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Nutritional Immunology, a section of the journal Frontiers in Immunology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>27</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>13</volume>
<elocation-id>1088850</elocation-id>
<history>
<date date-type="received">
<day>03</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>21</day>
<month>12</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Cui, Yang, Zhang, Liu, Wang, Jiao, Bao, Lin, Wei, Qian, Shi, Su and Qian</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Cui, Yang, Zhang, Liu, Wang, Jiao, Bao, Lin, Wei, Qian, Shi, Su and Qian</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Currently, the anti-oxidation of active ingredients in mulberry leaves (MLs) and their forage utilization is receiving increasing attention. Here, we propose that MLs supplementation improves oxidative resistance and immunity.</p>
</sec>
<sec>
<title>Methods</title>
<p>We conducted a trial including three groups of growing mutton sheep, each receiving fermented mulberry leaves (FMLs) feeding, dried mulberry leaves (DMLs) feeding or normal control feeding without MLs.</p>
</sec>
<sec>
<title>Results</title>
<p>Transcriptomic and metabolomic analyses revealed that promoting anti-oxidation and enhancing disease resistance of MLs is attributed to improved tryptophan metabolic pathways and reduced peroxidation of polyunsaturated fatty acids (PUFAs). Furthermore, immunity was markedly increased after FMLs treatment by regulating glycolysis and mannose-6-phosphate pathways. Additionally, there was better average daily gain in the MLs treatment groups.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>These findings provide new insights for understanding the beneficial effects of MLs in animal husbandry and provide a theoretical support for extensive application of MLs in improving nutrition and health care values.</p>
</sec>
</abstract>
<kwd-group>
<kwd>mulberry leaves</kwd>
<kwd>anti-oxidation</kwd>
<kwd>peroxidation of polyunsaturated fatty acids</kwd>
<kwd>tryptophan metabolism</kwd>
<kwd>immunity</kwd>
<kwd>glycolysis</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="4"/>
<equation-count count="0"/>
<ref-count count="68"/>
<page-count count="14"/>
<word-count count="5702"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Currently, a number of medicinal plants are widely used as functional foods and alternative medicine to prevent and treat chronic diseases (<xref ref-type="bibr" rid="B1">1</xref>). This is due to the numerous bioactive components with anti-oxidant capabilities, such as phenolic compounds and flavonoids (<xref ref-type="bibr" rid="B2">2</xref>), which may help improve immunity by coordinating the metabolism of the body. Mulberry leaves (MLs) have been used as feed for silk worms for hundreds of years and also as a traditional Chinese medicine, according to the classical medicine books. Owing to their anti-oxidative, anti-inflammatory, anti-bacterial, and anti-hyperlipidemic properties, mulberry leaves are gaining increasing attention for use in Chinese herbal medicines (<xref ref-type="bibr" rid="B3">3</xref>). To date, the hypoglycemic and lipid-lowering effects of extracts or active ingredients in MLs are well established, against diabetes, fatty liver, and some similar diseases related to disorders in glucose and lipid metabolism. In addition, accumulating evidence have validated the promotion of growth and rumen development, anti-oxidant properties, and improvement in milk production by MLs or their active ingredients in livestock (<xref ref-type="bibr" rid="B3">3</xref>&#x2013;<xref ref-type="bibr" rid="B6">6</xref>). However, the underlying mechanism of MLs, as an unconventional feed with both nutritive and medicinal properties, on anti-oxidation and immunity in livestock remains poorly understood. In recent years, an explosion has occurred in the acquisition of biological data through the use of so-called &#x2018;omics&#x2019; techniques. Whilst many different omics technologies are now featured in the literature, the most frequently used omics are genomics, transcriptomics, proteomics and metabolomics (<xref ref-type="bibr" rid="B7">7</xref>). Thus, the aim of the present study was to evaluate the roles of MLs in growth promoting and animal welfare improving aspects of mutton sheep in terms of antioxidant and immune properties and explore the mechanism by methods of transcriptomic and metabolomic.Our study provides novel insights into the role of MLs in livestock yield and the application of natural functional fodder.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<p>The experiment was conducted in accordance with the Chinese Guidelines for Animal Welfare and Experimental Protocols, and approved by the Animal Care and Use Committee of the Institute of Northwest A &amp; F University.</p>
<sec id="s2_1">
<title>Preparation and chemical indexes measurement of fermented mulberry leaves and dried mulberry leaves</title>
<p>MLs (species 707) are harvested in July 2021 at the Institute of Sericulture and Silk in Zhouzhi, Shaanxi Province, China. One half is sun-dried for seven days, next well-sealed in woven bags after a little rubbing and then stored in a dry, dark place for acquiring DMLs for use in feeding experiment. The other half with 65.03% moisture content after wilted by sun-shine for a half day, is a little smashed and vacuum sealed in fermentation-special bags to ferment with 5% <italic>Lactobacillus plantarum</italic> inoculation at room temperature (27.5-28&#xb0;C) for thirty days in a dry, dark place for preparation for FMLs. Here 5% is adding 5 mL of bacterial culture suspension to 100 grams of MLs and the concentration of bacterial culture suspension is 1&#xd7;10<sup>8</sup> CFU/mL. <italic>Lactobacillus plantarum</italic> (CICC 23941) purchased from the China Center of Industrial Culture Collection (<uri xlink:href="http://www.china-cicc.org">www.china-cicc.org</uri>). Before feeding experiments, the pH, crude protein, crude fiber as well as gross energy of FMLs and DMLs are determined according to standard methods of AOAC. And their contents are shown in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. FMLs are deemed qualified without aflatoxin B1 detected at a minimum checked value of 0.1 &#x3bc;g/kg by Huayan Testing Group Co., Ltd in Xi&#x2019;an City, Shaanxi Province (Detection number: SP202115450).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Chemical composition of FMLs and DMLs.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">Items</th>
<th valign="middle" align="center">DM loss/%</th>
<th valign="middle" align="center">pH</th>
<th valign="middle" align="center">Crude protein/%</th>
<th valign="top" align="center">Crude fiber/%</th>
<th valign="middle" align="center">Gross energy/(MJ/kg)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">FMLs</td>
<td valign="middle" align="center">4.6</td>
<td valign="middle" align="center">3.98</td>
<td valign="middle" align="center">14.69</td>
<td valign="top" align="center">8.35</td>
<td valign="middle" align="center">15.92</td>
</tr>
<tr>
<td valign="middle" align="left">DMLs</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center">6.20</td>
<td valign="middle" align="center">15.15</td>
<td valign="top" align="center">9.72</td>
<td valign="middle" align="center">14.28</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>FMLs, fermented mulberry leaves; DMLs, dried mulberry leaves.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s2_2">
<title>Experimental design and feeding diets</title>
<p>Animal experiments are conducted on six-month-old healthy female mutton sheep (white-headed Suffolk sheep&#x2642;&#xd7;Hu sheep&#x2640;) weighing 30.41kg at average without genetic modification in Gansu Qinghuan Meat Sheep Seed Production Co. Ltd (Huan County, Qingyang City, Gansu Province, China). The animals were randomly assigned to group Con feeding a normal control diet (n=18), group TR1 feeding an experimental diet with FMLs (n=18) and group TR2 feeding an experimental diet with DMLs (n=18) and then treated for an experiment of fifty days. Each group had 6 replicates with 3 sheep per replicate. Before the feeding experiment, animals undergo an acclimatization period of six days to obtain an appropriate feed intake, during which they were allowed unlimited access to their corresponding experimental diet and tap water. Experimental sheep were housed in sheepfold and given self-help feeding in three groups every day. The ingredients and chemical composition of three experimental diets are shown in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>. The chemical compositions of three experimental diets are determined by Ulanqab Yima Agriculture and Animal Husbandry Technology Co., Ltd (Ulanqab City, Inner Mongolia, China).</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Ingredients and chemical composition of three experimental diets.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Items</th>
<th valign="middle" align="center">Con</th>
<th valign="middle" align="center">TR1</th>
<th valign="middle" align="center">TR2</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="middle" colspan="4" align="left">Ingredients</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;DMLs/%</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">7.11</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;FMLs/%</td>
<td valign="middle" align="center">0</td>
<td valign="middle" align="center">16.59</td>
<td valign="middle" align="center">0</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Oat hay/%</td>
<td valign="middle" align="center">12.43</td>
<td valign="middle" align="center">24.88</td>
<td valign="middle" align="center">17.77</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Corn silage/%</td>
<td valign="middle" align="center">29.00</td>
<td valign="middle" align="center">8.29</td>
<td valign="middle" align="center">24.88</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Corn/%</td>
<td valign="middle" align="center">19.34</td>
<td valign="middle" align="center">16.59</td>
<td valign="middle" align="center">16.59</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Wheat/%</td>
<td valign="middle" align="center">20.72</td>
<td valign="middle" align="center">17.77</td>
<td valign="middle" align="center">17.77</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Concentrate/%</td>
<td valign="middle" align="center">17.68</td>
<td valign="middle" align="center">15.17</td>
<td valign="middle" align="center">15.17</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Limestone/%</td>
<td valign="middle" align="center">0.83</td>
<td valign="middle" align="center">0.71</td>
<td valign="middle" align="center">0.71</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Total/%</td>
<td valign="middle" align="center">100</td>
<td valign="middle" align="center">100</td>
<td valign="middle" align="center">100</td>
</tr>
<tr>
<th valign="middle" colspan="4" align="left">Nutrients (based on dry matter)</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Dry matter/%</td>
<td valign="middle" align="center">72.50</td>
<td valign="middle" align="center">66.10</td>
<td valign="middle" align="center">66.40</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Crude protein/%</td>
<td valign="middle" align="center">16.40</td>
<td valign="middle" align="center">16.70</td>
<td valign="middle" align="center">16.60</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Metabolizable Energy/(MJ/kg)</td>
<td valign="middle" align="center">10.46</td>
<td valign="middle" align="center">10.63</td>
<td valign="middle" align="center">10.30</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Crude fat/%</td>
<td valign="middle" align="center">3.00</td>
<td valign="middle" align="center">3.40</td>
<td valign="middle" align="center">3.00</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Crude ash/%</td>
<td valign="middle" align="center">9.58</td>
<td valign="middle" align="center">9.24</td>
<td valign="middle" align="center">10.59</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Acid detergent fiber/%</td>
<td valign="middle" align="center">16.80</td>
<td valign="middle" align="center">17.50</td>
<td valign="middle" align="center">15.30</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Neutral detergent fiber/%</td>
<td valign="middle" align="center">27.80</td>
<td valign="middle" align="center">28.47</td>
<td valign="middle" align="center">25.76</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Lignin/%</td>
<td valign="middle" align="center">4.30</td>
<td valign="middle" align="center">4.40</td>
<td valign="middle" align="center">4.80</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2_3">
<title>Weighing and sample collection</title>
<p>Prior to the experiments, all sheep are driven to be weighed by an automatic weighing system to obtain the initial body weights. Afterwards, body weights on day 25th and 50th are weighted to calculate daily gains. On the 50th day, blood from the jugular vein was collected and placed in 5mL vacuum negative-pressure tubes with yellow cap containing separation gels for serum separation and then leave to set for one to two hours to collect rough 2.5mL serum, which is immediately stored in liquid nitrogen and taken to the lab for further analysis. At the end of the experimental period, 6 sheep per group which were representative in terms of average weight (inclusion criteria) of group were selected and slaughtered for tissue sample collection. Tissue samples (about 0.5&#xd7;0.5&#xd7;0.5cm<sup>3</sup>) of longissimus dorsi muscle and subcutaneous fat from the left side of the carcass are packed into 2 mL cryopreserved tube and frozen in liquid nitrogen immediately within 20&#xa0;min of slaughter for biochemical indexes and omics analysis. Weighting samples contain 18 biological repeats of each group.</p>
</sec>
<sec id="s2_4">
<title>Analysis of biochemical indexes</title>
<p>Growth hormone (GH), total antioxidant capacity (TAOC), superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GSH-Px) and malondialdehyde (MDA) are determined using commercially available kits (HY-60021, HY-60001, HY-M0018, HY-60005, HY-60003; Beijing Huaying Biotechnology Research Institute, Beijing, China). Serum immunoglobulin A, M, G (IgA, IgM, IgG) and tumor necrosis factor (TNF&#x3b1;) were determined by commercially available kits (HY-N0048, HY-N0049, HY-N0050, HY-H0019; Beijing Huaying Institute of Biotechnology Research Institute, Beijing, China). Immunoglobulin (IG) is the sum of immunoglobulins IgA, IgM and IgG. Muscle tissue samples contain 5 biological repeats (group Con), 6 biological repeats (group TR2) and 5 biological repeats (group TR2), respectively. Adipose tissue samples contain 5 biological repeats (group Con), 5 biological repeats (group TR2) and 5 biological repeats (group TR2), respectively. Serum samples contain 8 biological repeats (group Con), 7 biological repeats (group TR2) and 8 biological repeats (group TR2), respectively. Technical repetition is no less than 2 for all samples. No data point from the analysis is excluded.</p>
</sec>
<sec id="s2_5">
<title>Widely target metabolomics analysis</title>
<p>Tissue samples of muscle are extracted by Metware according to standard procedures. The sample extracts were analyzed using an LC-ESI-MS/MS system (UPLC, ExionLC AD, <uri xlink:href="https://sciex.com.cn/">https://sciex.com.cn/</uri>; MS, QTRAP<sup>&#xae;</sup> System, <uri xlink:href="https://sciex.com/">https://sciex.com/</uri>). LIT and triple quadrupole (QQQ) scans were acquired on a triple quadrupole-linear ion trap mass spectrometer (QTRAP), QTRAP<sup>&#xae;</sup> LC-MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in positive and negative ion mode and controlled by Analyst 1.6.3 software (Sciex). Instrument tuning and mass calibration were performed with 10 and 100 &#x3bc;mol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. A specific set of MRM transitions were monitored for each period according to the metabolites eluted within this period. Significantly regulated metabolites between groups were determined by variable importance in projection (VIP)&#x2265;1 and absolute Log<sub>2</sub>FC (fold change)&#x2265;1. VIP values were extracted from OPLS-DA result, which also contain score plots and permutation plots, was generated using R package MetaboAnalystR. The data was log transform (log<sub>2</sub>) and mean centering before OPLS-DA. In order to avoid overfitting, a permutation test (200 permutations) was performed.</p>
</sec>
<sec id="s2_6">
<title>Transcriptomic analysis</title>
<p>RNA-extract and RNA-seq of muscle are conducted according to standard procedures of Majorbio with the Illumina HiSeq xten/NovaSeq 6000 sequencer (2&#xd7;150bp read length). The raw paired end reads were trimmed and quality controlled by SeqPrep (<uri xlink:href="https://github.com/jstjohn/SeqPrep">https://github.com/jstjohn/SeqPrep</uri>) and Sickle (<uri xlink:href="https://github.com/najoshi/sickle">https://github.com/najoshi/sickle</uri>) with default parameters. Then clean reads were separately aligned to reference genome with orientation mode using HISAT2 (<uri xlink:href="http://ccb.jhu.edu/software/hisat2/index.shtml">http://ccb.jhu.edu/software/hisat2/index.shtml</uri>) software (<xref ref-type="bibr" rid="B8">8</xref>). The mapped reads of each sample were assembled by StringTie (<uri xlink:href="https://ccb.jhu.edu/software/stringtie/index.shtml?t=example">https://ccb.jhu.edu/software/stringtie/index.shtml?t=example</uri>) in a reference-based approach (<xref ref-type="bibr" rid="B9">9</xref>). To identify DEGs (differential expression genes) between two different samples, the expression level of each transcript was calculated according to the transcripts per million reads (TPM) method. RSEM (<uri xlink:href="http://deweylab.biostat.wisc.edu/rsem/">http://deweylab.biostat.wisc.edu/rsem/</uri>) (<xref ref-type="bibr" rid="B10">10</xref>) was used to quantify gene abundances. Essentially, differential expression analysis was performed using the DESeq2 (<xref ref-type="bibr" rid="B11">11</xref>)/DEGseq (<xref ref-type="bibr" rid="B12">12</xref>)/EdgeR (<xref ref-type="bibr" rid="B13">13</xref>) with Q value &#x2264; 0.05, DEGs with |log2FC|&gt;1 and Q value &#x2264; 0.05(DESeq2 or EdgeR)/Q value &#x2264; 0.001(DEGseq) were considered to be significantly different expressed genes. The transcriptomic sequence data have been deposited in the NCBI database (Accession No. PRJNA898816).</p>
</sec>
<sec id="s2_7">
<title>Statistical analysis</title>    <p>Statistical analysis was performed by the SPSS 19.0 software (IBM-SPSS Statistics, IBM Corp., Armonk, NY, United States). Data were evaluated using a one-way ANOVA followed by Turkey&#x2019;s multiple range tests for physiological and biochemical indexes. Significance was declared if <italic>p</italic>&lt;0.05. Additionally, omics sequencing data are analyzed using online platforms for data analysis, including Metware cloud tools (<uri xlink:href="https://cloud.metware.cn/#/tools/tool-list">https://cloud.metware.cn/#/tools/tool-list</uri>) and Majorbio cloud platform (<uri xlink:href="https://cloud.majorbio.com/">https://cloud.majorbio.com/</uri>). Histograms and metabolic pathway maps are drawn respectively using Graphpad Prism 8 and Adobe Illustrator CS6.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Growth performance</title>
<p>Throughout the trial, no significant differences were detected in daily gain (0&#x2013;25d) (Con&lt;TR2&lt;TR1) and feed to gain ratio (F/G) (Con&gt;TR2&gt;TR1) (<italic>p</italic>&gt;0.05, <xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>), although group TR1 which were fed with FMLs demonstrated a little increase in daily gain (0&#x2013;25d) and a slight decrease in F/G. Apparently, treatments with FMLs and DMLs (group TR2) generated an obvious increase in ADFI during the overall raising period (<italic>p</italic>&lt;0.05), which suggests MLs are a delicious feed for promotion. In addition, ADG, daily gain (25&#x2013;50d) and serum growth hormone levels were significantly improved in both MLs-treatment groups (<italic>p</italic>&lt;0.05) in the study. Further, FMLs feeding resulted in a significant increase in the final body weight (<italic>p</italic>&lt;0.05).</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Growth performance.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Items</th>
<th valign="middle" align="center">Con</th>
<th valign="middle" align="center">TR1</th>
<th valign="middle" align="center">TR2</th>
<th valign="middle" align="center">SEM</th>
<th valign="middle" align="center">
<italic>P</italic>-value</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Initial BW/kg</td>
<td valign="middle" align="center">30.36</td>
<td valign="middle" align="center">30.36</td>
<td valign="middle" align="center">30.50</td>
<td valign="middle" align="center">0.589</td>
<td valign="middle" align="center">0.994</td>
</tr>
<tr>
<td valign="top" align="left">Final BW/kg</td>
<td valign="middle" align="center">38.03<sup>b</sup>
</td>
<td valign="middle" align="center">42.05<sup>a</sup>
</td>
<td valign="middle" align="center">40.86<sup>ab</sup>
</td>
<td valign="middle" align="center">0.696</td>
<td valign="middle" align="center">0.050</td>
</tr>
<tr>
<td valign="top" align="left">ADFI/kg</td>
<td valign="middle" align="center">1.79<sup>b</sup>
</td>
<td valign="middle" align="center">2.31<sup>a</sup>
</td>
<td valign="middle" align="center">2.35<sup>a</sup>
</td>
<td valign="middle" align="center">0.033</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">Daily gain (0-25d)/g</td>
<td valign="middle" align="center">95.56</td>
<td valign="middle" align="center">125.56</td>
<td valign="middle" align="center">97.64</td>
<td valign="middle" align="center">6.999</td>
<td valign="middle" align="center">0.145</td>
</tr>
<tr>
<td valign="top" align="left">Daily gain (25-50d)/g</td>
<td valign="middle" align="center">211.11<sup>b</sup>
</td>
<td valign="middle" align="center">342.22<sup>a</sup>
</td>
<td valign="middle" align="center">317.64<sup>a</sup>
</td>
<td valign="middle" align="center">16.330</td>
<td valign="middle" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left">ADG (0-50d)/g</td>
<td valign="middle" align="center">156.11<sup>b</sup>
</td>
<td valign="middle" align="center">233.89<sup>a</sup>
</td>
<td valign="middle" align="center">205.56<sup>a</sup>
</td>
<td valign="middle" align="center">7.876</td>
<td valign="middle" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left">F/G</td>
<td valign="middle" align="center">13.38</td>
<td valign="middle" align="center">10.26</td>
<td valign="middle" align="center">11.79</td>
<td valign="middle" align="center">1.026</td>
<td valign="middle" align="center">0.483</td>
</tr>
<tr>
<td valign="top" align="left">GH</td>
<td valign="middle" align="center">4.81<sup>c</sup>
</td>
<td valign="middle" align="center">5.84<sup>b</sup>
</td>
<td valign="middle" align="center">7.28<sup>a</sup>
</td>
<td valign="middle" align="center">0.265</td>
<td valign="middle" align="center">0.000</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>BW, body weight; ADFI, average daily feed intake; ADG, average daily gain; F/G, ADFI/ADG; GH, growth hormone; SEM, standard error mean; Different letters in the same row (a&#x2013;c) differed (p&lt;0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<title>Anti-oxidant properties</title>
<p>As shown in <xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>, SOD (superoxide dismutase), CAT (catalase), GSH-Px (glutathione peroxidase) and TAOC (total antioxidant activity) in serum and muscle were significantly increased in the MLs treatment group, especially in the FMLs treatment group (<italic>p</italic>&lt;0.05); SOD and GSH-Px in adipose tissue also increased significantly (<italic>p</italic>&lt;0.05), CAT and TAOC tended to increase (Con&lt;TR2&lt;TR1, <italic>p</italic>&gt;0.05). In addition, feeding MLs significantly decreased the content of MDA in serum and muscle of mutton sheep (<italic>p</italic>&lt;0.05), the content of MDA in adipose tissue was Con&gt;TR2&gt;TR1 (<italic>p</italic>&gt;0.05).</p>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>Anti-oxidant properties of serum, muscle and adipose tissues.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Items</th>
<th valign="middle" align="center">Con</th>
<th valign="middle" align="center">TR1</th>
<th valign="middle" align="center">TR2</th>
<th valign="middle" align="center">SEM</th>
<th valign="middle" align="center">
<italic>P</italic>-value</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="top" colspan="6" align="left">
<underline>Serum</underline>
</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;SOD</td>
<td valign="middle" align="center">58.72<sup>c</sup>
</td>
<td valign="middle" align="center">77.94<sup>a</sup>
</td>
<td valign="middle" align="center">66.56<sup>b</sup>
</td>
<td valign="middle" align="center">2.021</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;CAT</td>
<td valign="middle" align="center">32.80<sup>c</sup>
</td>
<td valign="middle" align="center">58.95<sup>a</sup>
</td>
<td valign="middle" align="center">45.22<sup>b</sup>
</td>
<td valign="middle" align="center">2.489</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;GSH-PX</td>
<td valign="middle" align="center">358.13<sup>c</sup>
</td>
<td valign="middle" align="center">543.05<sup>a</sup>
</td>
<td valign="middle" align="center">476.41<sup>b</sup>
</td>
<td valign="middle" align="center">17.737</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;TAOC</td>
<td valign="middle" align="center">7.37<sup>c</sup>
</td>
<td valign="middle" align="center">10.84<sup>a</sup>
</td>
<td valign="middle" align="center">8.49<sup>b</sup>
</td>
<td valign="middle" align="center">0.366</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;MDA</td>
<td valign="middle" align="center">5.09<sup>a</sup>
</td>
<td valign="middle" align="center">4.05<sup>b</sup>
</td>
<td valign="middle" align="center">4.60<sup>ab</sup>
</td>
<td valign="middle" align="center">0.150</td>
<td valign="middle" align="center">0.013</td>
</tr>
<tr>
<th valign="top" colspan="6" align="left">
<underline>Muscle</underline>
</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;SOD</td>
<td valign="middle" align="center">5.55<sup>c</sup>
</td>
<td valign="middle" align="center">9.64<sup>a</sup>
</td>
<td valign="middle" align="center">7.67<sup>b</sup>
</td>
<td valign="middle" align="center">0.475</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;CAT</td>
<td valign="middle" align="center">2.37<sup>c</sup>
</td>
<td valign="middle" align="center">4.49<sup>a</sup>
</td>
<td valign="middle" align="center">3.56<sup>b</sup>
</td>
<td valign="middle" align="center">0.241</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;GSH-PX</td>
<td valign="middle" align="center">23.12<sup>c</sup>
</td>
<td valign="middle" align="center">31.81<sup>a</sup>
</td>
<td valign="middle" align="center">27.35<sup>b</sup>
</td>
<td valign="middle" align="center">1.029</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;TAOC</td>
<td valign="middle" align="center">3.18<sup>c</sup>
</td>
<td valign="middle" align="center">5.10<sup>a</sup>
</td>
<td valign="middle" align="center">4.47<sup>b</sup>
</td>
<td valign="middle" align="center">0.226</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;MDA</td>
<td valign="middle" align="center">4.33<sup>a</sup>
</td>
<td valign="middle" align="center">3.31<sup>b</sup>
</td>
<td valign="middle" align="center">3.98<sup>a</sup>
</td>
<td valign="middle" align="center">0.134</td>
<td valign="middle" align="center">0.001</td>
</tr>
<tr>
<th valign="top" colspan="6" align="left">
<underline>Adipose</underline>
</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;SOD</td>
<td valign="middle" align="center">2.18<sup>c</sup>
</td>
<td valign="middle" align="center">5.23<sup>a</sup>
</td>
<td valign="middle" align="center">3.58<sup>b</sup>
</td>
<td valign="middle" align="center">0.371</td>
<td valign="middle" align="center">0.000</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;CAT</td>
<td valign="middle" align="center">0.72</td>
<td valign="middle" align="center">1.68</td>
<td valign="middle" align="center">0.98</td>
<td valign="middle" align="center">0.201</td>
<td valign="middle" align="center">0.126</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;GSH-PX</td>
<td valign="middle" align="center">6.01<sup>c</sup>
</td>
<td valign="middle" align="center">11.17<sup>a</sup>
</td>
<td valign="middle" align="center">8.20<sup>b</sup>
</td>
<td valign="middle" align="center">0.691</td>
<td valign="middle" align="center">0.003</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;TAOC</td>
<td valign="middle" align="center">0.98</td>
<td valign="middle" align="center">2.05</td>
<td valign="middle" align="center">1.26</td>
<td valign="middle" align="center">0.254</td>
<td valign="middle" align="center">0.212</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;MDA</td>
<td valign="middle" align="center">1.32</td>
<td valign="middle" align="center">1.17</td>
<td valign="middle" align="center">1.00</td>
<td valign="middle" align="center">0.185</td>
<td valign="middle" align="center">0.809</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>SOD, superoxide dismutase; CAT, catalase; GSH-PX, glutathione peroxidase; TAOC, total antioxidant capacity; MDA, malonaldehyde; muscle, longissimus dorsi, adipose, subcutaneous fat. Different letters in the same row (a&#x2013;c) differed (p&lt;0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>To further explore how MLs cause a differences in promoting oxidation resistance, muscle widely target metabolomics was applied. A total 43 significant differential metabolites (DEMs), including 19 upregulated and 24 downregulated DEMs after FMLs treatment, were filtered according to the criteria that the metabolite contents were within FC&#x2265;2 or FC &#x2264; 0.5, and VIP&#x2265;1 (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). On this basis, the p-value is listed ascending order and absolute value of log<sub>2</sub>FC is listed in descending order of 43 DEMs to further obtain the leading 20 DEMs, shown in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>. These top-ranking DEMs were mainly involved in lipid, carbohydrate, amino acid, and organic acid metabolism. As the heatmap shows, anti-oxidant properties were negatively correlated (dark blue) with products of lipid metabolism (8-iso Prostaglandin F2&#x3b1;, 11&#x3b2;-Prostaglandin F2&#x3b1;, 8-iso Prostaglandin F2&#x3b2;, (&#xb1;)8-HETE, 13-HOTrE, Carnitine C8:1), and were positively correlated (dark red) with D-Glucose 6-Phosphate, D-Fructose 6-Phosphate-Disodium Salt, D-Fructose-1,6-Biphosphate-Trisodium Salt, and D-Mannose 6-phosphate, which are related to carbohydrate metabolism (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1C</bold>
</xref>). This suggests that lipid metabolism and carbohydrate metabolism in FMLs treatment regulate the anti-oxidant process. More importantly, the correlation analysis suggests that the increased expression of 5-Hydroxy-L-Tryptophan and indoleacrylic acid produced by tryptophan metabolism may play crucial roles in anti-oxidant regulation. <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref> exhibited the DEMs from Con vs. TR2,including 16 upregulated and 39 downregulated, 55 in total DEMs, based on the same screening criteria as FMLs treatment. Similarly, the top-ranking 20 DEMs in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref> obtained in the same method, are also mainly involved in lipid metabolism (8-iso Prostaglandin F2&#x3b1;, 11&#x3b2;-Prostaglandin F2&#x3b1;, 8-iso Prostaglandin F2&#x3b2;, 13-HOTrE, Carnitine C8:1), carbohydrate metabolism (D-Mannose 6-phosphate, D-Glucose 6-Phosphate, D-Fructose 6-Phosphate-Disodium Salt), amino acid metabolism and organic acid metabolism. However, few correlation relationships (yellow in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>) between carbohydrate metabolism and anti-oxidant properties in heatmap analysis show that DMLs supplementation might slightly, or not facilitate oxidation resistance by regulating carbohydrate metabolism.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>DEMs from Con vs. TR1. Upregulated, downregulated and total numbers of DEMs from Con vs. TR1 <bold>(A)</bold>, the 20 leading DEMs from Con vs. TR1 <bold>(B)</bold>, a correlation heat map between the 20 leading DEMs from Con vs. TR1 and their indexes of antioxidant performance <bold>(C)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-1088850-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>DEMs from Con vs. TR2. Upregulated, downregulated and total numbers of DEMs from Con vs. TR2 <bold>(A)</bold>, the 20 leading DEMs from Con vs. TR2 <bold>(B)</bold>, a correlation heat map between the 20 leading DEMs from Con vs. TR2 and their indexes of antioxidant performance <bold>(C)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-1088850-g002.tif"/>
</fig>
<p>Considering the 20 DEMs and antioxidant performance indexes between Con vs. TR1 and Con vs. TR2, It is not too difficult to discover the importance of lipid metabolism, especially the peroxidation of polyunsaturated fatty acids (PUFAs), amino acid metabolism (mainly tryptophan metabolism) for MLs treatment, and carbohydrate metabolism (mainly glycolysis and mannose 6-phosphate pathway) only for FMLs treatment in promoting oxidation resistance. The tryptophan metabolism and peroxidation of PUFAs could be promising MLs-dependent biomarkers of the anti-oxidant metabolism pathway. Indoleacrylic acid and 5-hydroxy tryptophan (5-HTP) obtained from the two routes of tryptophan metabolism (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>) were significantly upregulated. Indolelactic acid, an upstream metabolite of indoleacrylic acid, was also significantly increased in FMLs treatment (<italic>p</italic>=0.015). Moreover, the markedly decreased 8-HETE, 13-HOTrE, 8-iso Prostaglandin F2&#x3b1;, 11&#x3b2;-Prostaglandin F2&#x3b1;, and 8-iso prostaglandin F2&#x3b2; levels and increased carnitine C8:1 are present after MLs treatment.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Peroxidation of PUFAs and tryptophan metabolism. Elevated metabolites are highlighted in red, reduced metabolites are shown in blue; the contents of painted green or red metabolites from top 20 DEMs and antioxidant biochemical indexes are displayed in heat map (*<italic>p</italic>&lt;0.05, **<italic>p</italic>&lt;0.01, * and ** are TR1 or TR2 compared to Con). (MLs, mulberry leaves; FMLs, fermented mulberry leaves; DMLs, dried mulberry leaves; LP, <italic>Lactobacillus plantarum</italic>; LAB, lactic acid bacteria; PUFA, polyunsaturated fatty acids; ALA, &#x3b1; linolenic acid; ARA, arachidonic Acid; CPT1/CPT2, carnitine palmitoyltransferase 1/2; NFA, medium-chain fatty acid; 5-HTP, 5-hydroxytryptophan; 5-HT, serotonin; AAAD, aromatic amino acid decarboxylase; TPH1/2, tryptophan hydroxylase 1/2).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-1088850-g003.tif"/>
</fig>
<p>Transcriptome analysis was performed to further verify that reducing the peroxidation of PUFAs could indeed promote oxidation resistance. All filtered sequenced genes were used for weighted gene co-expression network analysis (WGCNA) analysis. Correlation analysis of different module genes and grouping factors and six DEMs related to PUFAs metabolism (8-iso Prostaglandin F2&#x3b1;, 11&#x3b2;-Prostaglandin F2&#x3b1;, 8-iso Prostaglandin F2&#x3b2;, (&#xb1;)8-HETE, 13-HOTrE, carnitine C8:1) are shown in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>. Three module genes (underlined module in red in the <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>) with almost the same correlation with the grouping factors and DEMs were integrated for further analysis. Subsequently, 14 target DEGs were obtained from the integrated genes with two criteria that their p-value must be less than 0.05, and absolute log<sub>2</sub>FC (Con vs. TR1) value must be not less than 1. Subsequently, they were gathered with six DEMs for network map analysis (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). The relative expression levels of these 14 target DEGs in the three groups are shown in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>. Relative expression levels of <italic>GCNT1</italic>, <italic>IFITM10</italic>, <italic>EXTL1</italic>, <italic>RILP</italic>, <italic>BBC3</italic>, <italic>RAB9A</italic>, <italic>MOB3B</italic>, <italic>SESN1</italic>, <italic>CDH4</italic>, <italic>MEIS1</italic>, <italic>RAB9A</italic>, <italic>NUDT7</italic>, <italic>FMO2</italic> and <italic>NUDT7</italic> was decreased siginificantly (<italic>p</italic>&lt;0.05).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>DEGs related with peroxidation of PUFAs. Module analysis of DEMs related with PUFAs metabolism and all filtered genes (Underlined modules in red represent selective modules; A, carnitine C8:1; B, 8-iso-prostaglandin F2&#x3b1;; C, 11&#x3b2;-prostaglandin F2&#x3b1;; D, 8-iso-prostaglandin F2&#x3b2;; E, (&#xb1;) 8-HETE; F, 13-HOTrE) <bold>(A)</bold>, network map analysis of selective twelve DEGs and DEMs related with PUFAs metabolism (circle size represents absolute log<sub>2</sub>FC (Con vs TR1) value; blue, red and green divisions in every circle are on behalf of contents of some DEGs or DEMs in Con, TR1,TR2 in turn; The thickness of the connecting wire represents the degree of connectivity) <bold>(B)</bold> and the relative expression levels of selective twelve target DEGs in three groups (*represents <italic>p</italic>&lt;0.05, ** represents <italic>p</italic>&lt;0.01, ns represents no differences) <bold>(C)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-1088850-g004.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Immune response</title>
<p>Serum immuno globulin G (IgG) and total immuno globulin (Ig) levels increased in the FMLs (<italic>p</italic>&lt;0.05) remarkably and DMLs fed groups (<italic>p</italic>&gt;0.05). The pro-inflammatory tumor necrosis factor-&#x3b1; (TNF-&#x3b1;) was dramatically reduced by both MLs treatments (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>) (<italic>p</italic>&lt;0.05). However there is a distinctive decrease in immuno globulin M (IgM) following FMLs treatment (<italic>p</italic>&lt;0.05). The decreased IgM following FMLs treatment is related to a transition in antibody class from IgM to IgG, over the course of an immune response (<xref ref-type="bibr" rid="B14">14</xref>) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Indexes of immune properties and DEGs related to immune response. Immune indexes of serum <bold>(A)</bold> a transition from IgM to IgG in immune B cells over the course of immune response (Heat maps show the relative amounts of substances in group Con, TR1 and TR2 from left to right; * represent <italic>p</italic>&lt;0.05, indicative of the significant difference by comparing TR1 or TR2 to Con) <bold>(B)</bold>, kegg enrichment analysis of all DEGs from TR1 vs. Con <bold>(C)</bold>, Circular correlation analysis of six selective DEGs from top 4 kegg pathway and immune indexes of serum <bold>(D)</bold>, Relative expression levels of six selective DEGs related to immune response <bold>(E)</bold> (* represents <italic>p</italic>&lt;0.05, ** represents <italic>p</italic>&lt;0.01, ns represents no differences in histograms).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-1088850-g005.tif"/>
</fig>
<p>As reported by Wu et&#xa0;al. (<xref ref-type="bibr" rid="B15">15</xref>), muscles support a strong immune response. To validate the promotion of the immune process of FMLs, all DEGs of FMLs treatment in muscle analyzed by transcriptomics were applied for enrichment analysis, and the top eight KEGG pathways are represented in a histogram (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). The four leading enriched pathways (arrow&#x2019;s place in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>) are closely related to apoptosis and immune processes. Subsequently, a total of six annotated DEGs from the leading four pathways and immune indices were combined to analyze the relevance and a clear relationship was shown in the circular map (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5D</bold>
</xref>). After MLs treatment, the relative expressions of the DEGs, including <italic>DOCK2</italic>, <italic>BBC3</italic>, <italic>MYO10, PIK3R3, PLA2G4D</italic>, <italic>GADD45A</italic>, were markedly altered (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5E</bold>
</xref>).</p>
<p>Previously, we found that FMLs improves carbohydrate metabolism, and glycolysis is one of the key processes. It has been found that it can provide biosynthetic intermediates and reducing power for the growth and proliferation of immune cells. MLs treatments raise levels of glucose, the central substrate of glycolysis and FMLs supplementation significantly increases the contents of glucose-6-P, glyceraldehyde-3-P (<italic>p</italic>&lt;0.05) and almost significantly increases fructose-6-P (<italic>p</italic>=0.054) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). Additionally, there are significantly increased D-mannose in DMLs treatment (<italic>p</italic>&lt;0.05) and mannose-6-P in FMLs treatment (<italic>p</italic>&lt;0.05) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>). These two are both derived from mannose-6-P pathway.</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Glycolysis and the mannose-6-P pathway in immune function. Heat maps show the relative amounts of substances in group Con, TR1 and TR2 from left to right; * represent <italic>p</italic>&lt;0.05, indicative of the significant difference by comparing TR1 or TR2 to Con; M1, type 1 macrophages; M2, type 2 macrophages; Treg, regulatory T cells; P, phosphatase.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-13-1088850-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>Numerous studies have shown the diverse growth-promoting effects of MLs (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B16">16</xref>). Our study also proves this point. In addition, this study also found that FMLs are superior to FMLs in palatability and growth promotion, which is a rare feed additive, and its application prospects in animal husbandry production appear considerable.</p>
<sec id="s4_1">
<title>Anti-oxidation activity</title>
<p>Oxidation in biological systems is mainly mediated by a series of redox enzymes. Peroxidation caused by free radical chain reactions may lead to oxidative stress (<xref ref-type="bibr" rid="B17">17</xref>). SOD, CAT and GSH-Px are common enzymatic antioxidants. SOD can convert free radicals (O2&#x2212;&#x2022;) generated in the body&#x2019;s peroxidation reaction into H2O2 (<xref ref-type="bibr" rid="B18">18</xref>), and H<sub>2</sub>O<sub>2</sub> can then be converted into H<sub>2</sub>O by CAT and GSH-Px to reduce the damage resulting from free radical to the body and improve antioxidant performance. MDA is one of the representative end products under non-enzymatic lipid peroxidation, indicating the extent of lipid peroxidation (<xref ref-type="bibr" rid="B19">19</xref>). Meanwhile, MDA is also an important indicator of membrane damage and body aging, and one of the toxic substances produced by the increase of ROS (<xref ref-type="bibr" rid="B20">20</xref>). The increase of SOD, CAT, GSH-Px, TAOC and the decrease of MDA in this study all indicate that MLs can improve the antioxidant performance of the body, which is consistent with the results of previous studies (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B21">21</xref>&#x2013;<xref ref-type="bibr" rid="B23">23</xref>). The reason is that MLs are rich in bioactive ingredients. In addition, this study also found that FMLs have the strongest antioxidant properties, mainly because of their higher active ingredients than DMLs (<xref ref-type="bibr" rid="B24">24</xref>).</p>
<p>Indoleacrylic acid derived from tryptophan metabolism, has been shown to have significant anti-inflammatory effects <italic>in vitro</italic> and vivo (<xref ref-type="bibr" rid="B25">25</xref>) and also have beneficial effects on the intestinal epithelial barrier function (<xref ref-type="bibr" rid="B26">26</xref>). Indolelactic acid, an upstream metabolite of indoleacrylic acid has been shown to possess antimicrobial, anti-oxidative, anti-inflammatory activities (<xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B27">27</xref>) and can potentially modulate immune function (<xref ref-type="bibr" rid="B28">28</xref>). L-5-hydroxytryptophan (5-HTP) is a monoamine neurotransmitter involved in the modulation of mood, cognition, reward, learning, memory, sleep, and numerous other physiological processes (<xref ref-type="bibr" rid="B29">29</xref>), and can also suppress inflammation and arthritis by decreasing the production of pro-inflammatory mediators (<xref ref-type="bibr" rid="B30">30</xref>). Overall, MLs, especially FMLs, must endow anti-bacterial, anti-oxidant, anti-inflammation, and immunity-enhancing properties <italic>via</italic> tryptophan metabolism.</p>
<p>Linoleic acid (LA), arachidonic acid (ARA), eicosapentaenoic acid (EPA) and &#x3b1;-linolenic acid (ALA) are representative of the main PUFAs, and the major metabolic pathways of peroxidation described in mammals are both enzymatic (cyclooxygenase, COX; lipoxygenase, LOX; cytochrome P450, CYP) and non-enzymatic (<xref ref-type="bibr" rid="B31">31</xref>) oxidation. 8-HETE and 13-HOTrE are all oxylipins, a group of oxidized metabolites derived from PUFAs (<xref ref-type="bibr" rid="B32">32</xref>). Generally, the synthesis of oxylipins fluctuates with the changes of physiological or pathological states (<xref ref-type="bibr" rid="B33">33</xref>).13-HOTrE is derived from ALA <italic>via</italic> the COX enzymatic pathway. Studies have revealed that 13-HOTrE levels are significantly increased in some diseases (<xref ref-type="bibr" rid="B34">34</xref>, <xref ref-type="bibr" rid="B35">35</xref>), such as acute liver injury. Therefore, it is generally thought to be a proinflammatory factor. HETEs are derived from ARA through COX catalysis. Hayashi et&#xa0;al. (<xref ref-type="bibr" rid="B36">36</xref>) reported that several ARA-derived (18-HETE/20-HETE) and ALA-derived (13-HOTrE) oxylipins tend to increase in bovine mastitic milk. In this study, MLs treatments reduced the 8-HETE contents. Meanwhile Ma et&#xa0;al. (<xref ref-type="bibr" rid="B37">37</xref>) also reported that 8-HETE is relevant for the efficacy of Zuojin pill treatment in chronic nonatrophic gastritis, as the level of 8-HETE was higher before treatment than after treatment. Thus, decreased oxylipins in this study with MLs treatments probably improve the antioxidant performance and immunity of the body and will be promising markers for livestock welfare.</p>
<p>8-iso Prostaglandin F2&#x3b1;, as a final product of lipid peroxidation, is generated from ARA interacting with ROS through nonenzymatic routes and is a robust oxidative stress biomarker of some diseases (<xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B38">38</xref>). 8-iso Prostaglandin F2&#x3b2; is a constitutional isomer of 8-iso Prostaglandin F2&#x3b1;. Oliveira et&#xa0;al. (<xref ref-type="bibr" rid="B39">39</xref>) found that 8-iso Prostaglandin F2&#x3b2; has much lower potency than 8-iso Prostaglandin F2&#x3b1; with an &#x3b1;-configuration. 11&#x3b2;-Prostaglandin F2&#x3b1;, as a metabolite of 8-iso Prostaglandin F2&#x3b1;, have been found to be associated with levels of oxidative stress in specific diseases (<xref ref-type="bibr" rid="B40">40</xref>). Thus, the markedly decreased 8-iso Prostaglandin F2&#x3b1;, 11&#x3b2;-Prostaglandin F2&#x3b1;, and 8-iso prostaglandin F2&#x3b2; levels after MLs treatment indicate a decline in the peroxidation of PUFAs, which will produce benificial effects on lowering oxidative stress and enhancing disease resistance.</p>
<p>Carnitine plays a key role not only in fatty acid &#x3b2;-oxidation, but also in immunity enhancement and disease resistance. Guo et&#xa0;al. (<xref ref-type="bibr" rid="B41">41</xref>) found that carnitine C8:1 was significantly decreased the in non-alcoholic steatohepatitis group, and this could be profoundly reversed after luteolin treatment. Studies have reported decreased serum acyl-carnitine concentrations in patients with cancer (<xref ref-type="bibr" rid="B42">42</xref>). It can be hypothesized that increased carnitine C8:1 levels altered by MLs supplementation might accelerate mitochondrial &#x3b2;-oxidation (<xref ref-type="bibr" rid="B43">43</xref>) thereby enhancing immunity and disease resistance.</p>
<p>Previous studies have shown that increased <italic>GCNT1</italic>, <italic>IFITM10</italic>, <italic>EXTL1</italic>, <italic>RILP</italic>, <italic>BBC3</italic>, <italic>RAB9A</italic>, <italic>MOB3B</italic>, <italic>SESN1</italic>, <italic>CDH4</italic>, <italic>MEIS1</italic>, <italic>RAB9A</italic>, <italic>NUDT7</italic>, and <italic>FMO2</italic> are related to immune deficiency, autophagy inhibition, disease sensitivity and oxidative stress. Therefore, after treatment of MLs, the decreased peroxidation of PUFAs (the decreasing in peroxidation products) reduced the expression of the above genes, thus improving the immune and antioxidant properties. In addition, Shumar et&#xa0;al. (<xref ref-type="bibr" rid="B44">44</xref>) and Kerr et&#xa0;al. (<xref ref-type="bibr" rid="B45">45</xref>) suggest that decreased <italic>NUDT7</italic> may reduce the accumulation of peroxisome through regulating the &#x3b2;-oxidation of peroxisome fatty acids, thus improving the antioxidant performance; Ge et&#xa0;al. (<xref ref-type="bibr" rid="B46">46</xref>) found that the decrease of <italic>NUDT7</italic> enhanced the immune defense response; Taniguchi et&#xa0;al. (<xref ref-type="bibr" rid="B47">47</xref>) and Liu et&#xa0;al. (<xref ref-type="bibr" rid="B48">48</xref>) reported that <italic>NUDT7</italic> with low expression may up-regulate heme biosynthesis and contribute to meat-redness enrichment. Therefore, the addition of MLs can not only reduce the peroxidation of PUFAs, enhancing the antioxidant capacity and immunity of the body, but also improve meat redness.</p>
<p>Overall, oxidation resistance is closely related to the immune response. Our study proved that MLs supplementation is effective in promoting oxidation resistance and disease resistance, which is attributed to its function in reducing peroxidation of PUFAs and increasing tryptophan metabolism. Additionally, as lipid oxidation products affect the shelf life (<xref ref-type="bibr" rid="B49">49</xref>), sensory characteristics (<xref ref-type="bibr" rid="B50">50</xref>), and nutritional composition of meat (<xref ref-type="bibr" rid="B51">51</xref>), the role of MLs in reducing the peroxidation of PUFAs is speculated to be linked to the improvements in meat quality.</p>
</sec>
<sec id="s4_2">
<title>Immune response</title>
<p>According to Sundling et&#xa0;al. (<xref ref-type="bibr" rid="B52">52</xref>), secreted antibodies confer immune protection by first attaching to foreign antigens through the paired variable regions of their immunoglobulin heavy and light chains. Immunity was enhanced with increased Ig, IgG and reduced TNF&#x3b1; in both MLs treatments. In addition, the FMLs induced maximum immunity in animals with a transition in antibody class from IgM to IgG, over the course of an immune response (<xref ref-type="bibr" rid="B14">14</xref>), During which, early low-affinity IgM antibodies are progressively replaced by more-effective, high-affinity IgG antibodies (<xref ref-type="bibr" rid="B53">53</xref>) to achieve effective serological immunity (<xref ref-type="bibr" rid="B52">52</xref>).</p>
<p>
<italic>DOCK2</italic> regulates the migration of certain subsets of immune cells <italic>via</italic> Rac activation (<xref ref-type="bibr" rid="B54">54</xref>) and plays an important anti-inflammatory role in the development of various inflammatory diseases (<xref ref-type="bibr" rid="B55">55</xref>). <italic>BBC3</italic> is a transcriptional apoptotic target gene and participates in the activation of cell death processes (<xref ref-type="bibr" rid="B56">56</xref>). Pozo et&#xa0;al. (<xref ref-type="bibr" rid="B57">57</xref>) reported that pro-inflammatory <italic>MYO10</italic> mediates inflammation in cancer by regulating genomic stability. Studies have shown that <italic>PIK3R3</italic> is a multifunctional gene related to inflammatory diseases, livestock coat color, and cell proliferation (<xref ref-type="bibr" rid="B58">58</xref>&#x2013;<xref ref-type="bibr" rid="B60">60</xref>). Shao et&#xa0;al. (<xref ref-type="bibr" rid="B61">61</xref>) clarified that <italic>PLA2G4D</italic>, a major pro-inflammatory factor, facilitates CD1a expression, which can be recognized by lipid-specific CD1a-reactive T cells, leading to the production of IL-22 and IL-17A. According to Ehmsen et&#xa0;al. (<xref ref-type="bibr" rid="B62">62</xref>) and Jiang et&#xa0;al. (<xref ref-type="bibr" rid="B63">63</xref>), the increased expression of <italic>GADD45A</italic>, a cell cycle regulator, can ameliorate liver fibrosis in rats and is a protective modifier of neurogenic skeletal muscle atrophy. Collectively, MLs supplementation improves muscle immune response and disease resistance.</p>
<p>Glycolysis is a critical process closely related to the immune response, as well as provides biosynthetic intermediates and reducing power for cell growth and proliferation of immune cells (<xref ref-type="bibr" rid="B64">64</xref>). The pentose phosphate pathway (PPP) from glucose-6-P to glyceraldehyde-3-P provides immune cells with key metabolites for immune function, such as reducing power for the synthesis of ROS and antioxidants in phagocytic cells and for phospholipid synthesis in dendritic cells. The hexosamine biosynthesis pathway, originating from fructose-6-P, provides substrates for the glycosylation of lipids and proteins that are important for Treg and M2 macrophage lineages (<xref ref-type="bibr" rid="B64">64</xref>). Thus FMLs treatment may enhance immunity by glycolysis, which in turn provides key metabolites for immune function.</p>
<p>D-mannose serves a vital function in T cell immune responses and is currently receiving increasing attention, although its normal physiological blood concentration is less than one-fiftieth of that of glucose. Zhang et&#xa0;al. (<xref ref-type="bibr" rid="B65">65</xref>) recognized that D-mannose induces regulatory T cells and suppresses immunopathology both <italic>in vivo</italic> and <italic>in vitro</italic>. Mannose-6-phosphate metabolized by D-mannose is a novel regulator of T cell immunity (<xref ref-type="bibr" rid="B66">66</xref>) and a promising target ligand in cancer therapy, as well as confers a better efficacy and lower toxicity in healthy tissues (<xref ref-type="bibr" rid="B67">67</xref>). Moreover, mannose-6-P not only plays a crucial role in lysosomal functions (such as autophagy) but also in regulating lysosome biogenesis (<xref ref-type="bibr" rid="B68">68</xref>). Thus, significantly increased D-mannose in DMLs treatment (<italic>p</italic>&lt;0.05) and mannose-6-P in FMLs treatment (<italic>p</italic>&lt;0.05) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>) <italic>via</italic> the mannose-6-P pathway enhances T cell immunity and likely regulates the lysosome biogenesis in autophagy.</p>
<p>Taken together, FMLs supplementation could improve the immune response <italic>via</italic> glycolysis and the mannose-6-P pathway and induce class switch from low-affinity IgM to high-affinity IgG antibodies.</p>
</sec>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are publicly available. This data can be found in the NCBI repository under accession number: PRJNA898816 [<uri xlink:href="https://www.ncbi.nlm.nih.gov/search/all/?term=PRJNA898816">https://www.ncbi.nlm.nih.gov/search/all/?term=PRJNA898816</uri>] and in the MetaboLights repository under accession number: MTBLS6516.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The animal study was reviewed and approved by Animal Care and Use Committee of the Institute of Northwest A &amp; F University. Written informed consent was obtained from the owners for the participation of their animals in this study.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>XC and YY contributed to the conception and design of the study. XC performed the statistical analysis and wrote the first draft of the manuscript. YY, MZ, FJ, LB, CS, and YQ revised the manuscript. SL, HW, ZL, XW, WQ and XS helped with the experimental sections. CS and YQ provided financial support for the manuscript. All authors contributed to manuscript revision, and read and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This study was financially supported by the Special Program in Technology and Innovation of the Shaanxi Forestry Academy (SXLK2020-0211), China Agriculture Research System of MOF (Ministry of Finance) and MARA (Ministry of Agriculture and Rural Affairs) (CARS-18), Technical System Construction of the Shaanxi Sericulture Industry (NYKJ-2022-YL(XN)29) and The special fund of key support project in Northwest A&amp;F University extension mode (TGZX2022-13).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>The authors acknowledge with the all participated in this study and we would like to thank Editage (<uri xlink:href="http://www.editage.com">www.editage.com</uri>) for English language editing.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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