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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2021.665901</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Synergistic Effects of Polysaccharides and Ginsenosides From American Ginseng (<italic>Panax quinquefolius</italic> L.) Ameliorating Cyclophosphamide-Induced Intestinal Immune Disorders and Gut Barrier Dysfunctions Based on Microbiome-Metabolomics Analysis</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Rongrong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1222030"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>He</surname>
<given-names>Dan</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/844426"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Xie</surname>
<given-names>Jing</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Qingyijun</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zeng</surname>
<given-names>Hongliang</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/576373"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Li</surname>
<given-names>Hongmei</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Huang</surname>
<given-names>Luqi</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/362483"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>School of Pharmacy, Changchun University of Chinese Medicine</institution>, <addr-line>Changchun</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Hunan Academy of Chinese Medicine, Hunan University of Chinese Medicine</institution>, <addr-line>Changsha</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Insitute of Chinese Materia, China Academy of Chinese Medical Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Jos&#xe9; Mois&#xe9;s Laparra, IMDEA Food Institute, Spain</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Qiang Yu, Nanchang University, China; Alberto Finamore, Council for Agricultural and Economics Research (CREA), Italy</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Luqi Huang, <email xlink:href="mailto:huangluqi01@126.com">huangluqi01@126.com</email>; Hongmei Li, <email xlink:href="mailto:hmli@icmm.ac.cn">hmli@icmm.ac.cn</email>; Hongliang Zeng, <email xlink:href="mailto:zenghl155@163.com">zenghl155@163.com</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Nutritional Immunology, a section of the journal Frontiers in Immunology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>22</day>
<month>04</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>665901</elocation-id>
<history>
<date date-type="received">
<day>09</day>
<month>02</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>03</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Zhou, He, Xie, Zhou, Zeng, Li and Huang</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Zhou, He, Xie, Zhou, Zeng, Li and Huang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Cyclophosphamide&#xa0;(CTX), used in&#xa0;cancer chemotherapy,&#xa0;a high dose of which would cause&#xa0;immunosuppressive effect and intestinal mucosa damage. American ginseng (<italic>Panax quinquefolius</italic> L.) has a long history of functional food use for immunological disorder, colitis, cancer, and so on. This study aimed to illustrate the underlying mechanism of American ginseng&#x2019;s immunomodulatory effect in CTX-induced mice. In this study, all groups of American ginseng (American ginseng polysaccharide [AGP], American ginseng ginsenoside [AGG], co-treated with American ginseng polysaccharide and ginsenoside [AGP_AGG]) have relieve the immune disorder by reversing the lymphocyte subsets ratio in spleen and peripheral blood, as well as stimulating CD4<sup>+</sup>T cells&#xa0;and&#xa0;IgA-secreting cells in small intestine. These three treatment groups, especially AGP_AGG co-treated group recovered the intestine morphology that up-regulated villus height (VH)/crypt depth (CD) ratio, areas of mucins expression, quantity of goblet cells, and expression of tight junction proteins (ZO-1, occludin). Importantly, the microbiome-metabolomics analysis was applied in this study to illustrate the possible immuno-modulating mechanism. The synergistic effect of polysaccharides and ginsenosides (AGP_AGG group) restored the gut microbiota composition and increased various beneficial mucosa-associated bacterial taxa Clostridiales, Bifidobacterium, and Lachnospiraceae, while decreased harmful bacteria Escherichia-Shigella and Peptococcaceae. Also, AGP_AGG group altered various fecal metabolites such as uric acid, xanthurenic acid, acylcarnitine, 9,10-DHOME, 13-HDoHE, LysoPE15:0, LysoPC 16:0, LysoPI 18:0, and so on, that associated with immunometabolism or protective effect of gut barrier. These results suggest AG, particularly co-treated of polysaccharide and ginsenoside may be used as immunostimulants targeting microbiome-metabolomics axis to prevent CTX-induced side effects in cancer patients.</p>
</abstract>
<kwd-group>
<kwd>American ginseng</kwd>
<kwd>immunostimulant</kwd>
<kwd>gut barrier function</kwd>
<kwd>gut microbiota</kwd>
<kwd>fecal metabolites</kwd>
</kwd-group>
<counts>
<fig-count count="10"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="77"/>
<page-count count="18"/>
<word-count count="7542"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>
<italic>Panax quinquefolius</italic> L. (AG, American ginseng) as one of the <italic>Panax</italic> species, is native to Canada and eastern America and also largely exported to China (<xref ref-type="bibr" rid="B1">1</xref>). Both <italic>in vitro</italic> and <italic>in vivo</italic> studies have suggested that American ginseng can be applied as dietary supplement in modulating immune system and used against cancer, viral, and bacterial infection (<xref ref-type="bibr" rid="B2">2</xref>). Its active ingredients include polysaccharides (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B4">4</xref>), ginsenosides (<xref ref-type="bibr" rid="B5">5</xref>), and polyacetylenes (<xref ref-type="bibr" rid="B6">6</xref>) isolated from AG root. CVT-E002, an aqueous extract from American ginseng (<italic>Panax quinquefolius</italic> L.), which mainly contains polysaccharides, stimulated proliferation of normal mouse spleen cells, and macrophage cytokine production <italic>in vitro</italic>, as well as activated immunoglobulin G production <italic>in vivo</italic> (<xref ref-type="bibr" rid="B7">7</xref>). Also, many data have shown that ginsenosides can improve immune function so as to fight against cancer through improving cytotoxicity of natural killer cells and activation of cytotoxic T lymphocytes (<xref ref-type="bibr" rid="B8">8</xref>&#x2013;<xref ref-type="bibr" rid="B11">11</xref>). Moreover, it is suggested that AG polysaccharide and ginsenoside can exert their immunoregulatory effects on the gut-associated lymphoid tissue (GALT), while ginsenoside consumption increased the number of jejunal IgA<sup>+</sup> cells and CVT-E002 increased the IL-1&#x3b2; production in ConA-stimulated mesenteric lymph nodes cells (<xref ref-type="bibr" rid="B12">12</xref>). Previous studies indicated AG could restore the dysfunction of gut microbiota in DSS-induced colitis model (<xref ref-type="bibr" rid="B13">13</xref>). The combination therapy of AG berry and <italic>Scutellaria baicalensis</italic> could ameliorate side effects of cisplatin-induced vomiting and nausea (<xref ref-type="bibr" rid="B14">14</xref>).</p>
<p>Cyclophosphamide (CTX), a widely used chemotherapy medicine, can lead to tumor death due to genotoxicity and cytotoxicity (<xref ref-type="bibr" rid="B15">15</xref>). However, patients who take CTX might experience adverse effects, such as vomiting, diarrhea, and abdominal pain, related to disruption of mucosal barrier, bacteria translocation, and change of microbial composition (<xref ref-type="bibr" rid="B16">16</xref>). Also, CTX is a potent immunosuppressive agent which may result in occurrence of recurrent infection as well as interfere with wound healing (<xref ref-type="bibr" rid="B17">17</xref>). It is suggested to take CTX with other dietary supplements to reduce the side effects. However, it is still unclear whether AG-modified mucosal immunity and gut microbiota contribute to relief of side effects from chemotherapy.</p>
<p>Human gut is colonized by up to 100 trillion of microbes, which maintains a mutual benefit relationship between host&#xa0;and gut microbiota (<xref ref-type="bibr" rid="B18">18</xref>). Gut provides nutrients and breeding environment for gut microbiota, and gut microbiota provides benefit in nutrition, metabolism (e.g. vitamin synthesis, carbohydrate fermentation) and immunity. Studies on germ-free mice showed that gut microbiota plays an essential role in mucosal immunity development (<xref ref-type="bibr" rid="B19">19</xref>) and host immune response. The presence of specific bacteria species can develop certain sub-types of lymphocytes that shift immune response (<xref ref-type="bibr" rid="B20">20</xref>). Mucosal barrier is essential to protect against toxins and invasion of microbes, which can maintain the symbiotic relationship (<xref ref-type="bibr" rid="B21">21</xref>). Once the balance is broken, the intestine immune system can lead to diseases, such as inflammatory bowel disease (<xref ref-type="bibr" rid="B19">19</xref>). Hence, according to previous superior effects of AG on mucosal immunity and gut microbiota, we hypothesis AG might target gut microbiota to stimulate the immune system.</p>
<p>In this study, CTX-induced immunosuppressive model was established with C57BL/6 mice. The immunoenhancing and the epithelium protection effects of AG were evaluated on immune organ lymphocyte indexes and intestinal morphology analysis, administered 2 weeks of AG ginsenosides and polysaccharides. 16s RNA gene sequencing and UPLC-TOF analysis methods were adopted to detect the variation of gut microbiota and to filtrate the differential metabolites that reveal the underling mechanism. Research results suggest that AG, particularly co-treated of polysaccharide and ginsenoside, have immunoenhancing and the epithelium protection effects in cancer patients. Its mechanism may associate with the gut microbe-metabolic axis.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>American Ginseng Polysaccharide and Ginsenoside Preparation</title>
<p>AG root was purchased from Guangdong Letaotao Pharmaceutical Co., Ltd (Lot. 181203). The 4-year old AG root was collected in Jilin province, China and further identified by associate Prof. Hao Liu (Hunan Academy of Chinese Medicine, China). AG polysaccharides and ginsenosides were obtained from water extracts. In brief, AG powder (100&#xa0;g) was extracted with 1,000 mL deionized water for 2&#xa0;h (twice) at 100&#xb0;C. The extraction solution was concentrated at 60&#xb0;C and further added with ethanol to 70% ethanol content for overnight. The supernatant was collected as AG ginsenosides solution and dried with vacuum drying technique. AG polysaccharides solution was prepared by alcohol-precipitation and was deproteinized using Sevag reagent (chloroform: n-butyl alcohol = 4:1, v/v). Decoloration was conducted by a D-101 macroporous resin separation method (<xref ref-type="bibr" rid="B22">22</xref>). Solution was further deproteinized using Sevag reagent (chloroform: n-butyl alcohol = 4: 1, v/v). Furthermore, AG polysaccharides solution&#xa0;was dried by vacuum drying technique. The qualification and authentication&#xa0;of the AG&#xa0;ginsenosides and polysaccharides were performed using Liquid chromatography-mass spectrometry (LC-MS) and common anthrone-sulfuric acid method, respectively (<xref ref-type="supplementary-material" rid="SF2">
<bold>Table S1</bold>
</xref>). The extraction rate of total polysaccharide and ginsenosides were 8.24% (8.24&#xa0;g polysaccharide extract/100&#xa0;g American ginseng crude drug) and 2.14% (2.14&#xa0;g ginsenosides extract/100&#xa0;g American ginseng crude drug), respectively.</p>
</sec>
<sec id="s2_2">
<title>Animals and Experimental Design</title>
<p>A total of 42 male C57BL/6 mice (5 weeks of age, body weight 20 &#xb1; 2&#xa0;g) were purchased from the Hunan SJA Laboratory Animal Co. Ltd., (Changsha, China, SCXK&lt;Xiang&gt;2019-0004) and housed in the Animal Center (Changsha, China, SYXK&lt;Xiang&gt;2020-0008) under controlled light conditions (12&#xa0;h light&#x2212;dark cycle). Mice were provided with food and water ad libitum. After 1 week of acclimatization, mice were randomly divided into six groups with seven mice each: normal control (CTRL) group, CTX-treated group (Baxter International Co., Ltd, Illinois, USA), AG polysaccharides (AGP, 1500 mg/kg/d) group, AG ginsenoside (150 mg/kg/d, AGG) group, AG polysaccharides (1500 mg/kg/d)+ ginsenoside (150 mg/kg/d, AGP_AGG) group, positive control (80 mg/kg/d, LH: Alladdin, Shanghai, China) group. During the experiment, the normal and CTX groups were gavaged with saline, and the other four groups were gavaged with AG polysaccharides, AG ginsenosides, AG polysaccharides, ginsenosides combination, and Levamisole hydrochloride, respectively for 14 days. On the 7th, 9th, and 11th day, all mice except for the normal group were treated with an intraperitoneal injection of CTX (60 mg/kg. bw) once a day for 3 days, while the normal group was treated with same dose of saline. Fresh feces were collected on the 14th day, immediately frozen in liquid nitrogen, and stored at &#x2212;80&#xb0;C until further analysis. At the end of the experiment, mice were anesthetized with pentobarbital sodium (60 mg/kg. ip) and sacrificed (<xref ref-type="bibr" rid="B23">23</xref>). The blood, spleen, thymus, small intestine, and large intestine were excised for future experiments. All procedures were approved by the Institutional Animal Care and Use Committee (IACUC) of the&#xa0;Institute of Chinese Medicine, Hunan Academy of Chinese Medicine&#xa0;(Hunan, China) and performed in accordance with the Regulations of Experimental Animal Administration (Order No.2, Approved by the State Council in 1988, Third revision in 2017) issued by the State Committee of Science and Technology of the People&#x2019;s Republic of China.</p>
</sec>
<sec id="s2_3">
<title>Thymus and Spleen Index</title>
<p>The thymus and spleen were dissected and weighed to calculate the thymus and spleen indices. Thymus or spleen index (mg/g) = thymus or spleen mass (mg)/animal body mass (g).</p>
</sec>
<sec id="s2_4">
<title>Hematological Analysis</title>
<p>Blood sample was collected from the eyes and added with EDTA-2K for anti-coagulation. Blood counts were detected by a hematology analyzer (BC-5000Vet, Mindray, Shenzhen, China). The analysis included white blood cells (WBC), lymphocytes (Lym#), neutrophils (Neu#), basophils (Bas#), eosinophils (Eos#), monocyte (Mon#), red blood cell (RBC), hemoglobin (HGB), platelet count (PLT), and mean hemoglobin concentration (MCHC).</p>
</sec>
<sec id="s2_5">
<title>Flow Cytometry Assay</title>
<p>Spleen cells were prepared through a 70-mm nylon mesh strainer and washed with PBS. According to a previous reference of Huyan et&#xa0;al. (<xref ref-type="bibr" rid="B24">24</xref>), in short, both spleen suspension and blood sample were stained on ice for 30&#xa0;min with the following five anti-bodies (Biolegend, San Diego, USA), respectively: PE anti-mouse NK1.1 for natural killer cells analysis, PerCP anti-mouse CD19 for B lymphocyte analysis, APC anti-mouse CD3, FITC anti-mouse CD8a, and Brilliant Violet 421 anti-mouse CD4 for T lymphocyte subset analysis. The percentages of NK cells, B cells, and T-cell subsets were analyzed by a Dxp Athena flow cytometry (Cytek, CA, USA). Ten thousand events were acquired into the list-mode, and staining data were acquired on Flowjo CE software (Tree Star, OR, USA).</p>
</sec>
<sec id="s2_6">
<title>Histological Analysis</title>
<p>The small intestinal tissues were prepared for histological analysis using the methods described by Meng et al. with some modification (<xref ref-type="bibr" rid="B25">25</xref>). In brief, after being embedded in paraffin, samples of jejunum tissue were fixed in 4% paraformaldehyde, and then sliced in 4-&#xb5;m thickness.</p>
<p>In order to measure villus height and crypt depth, tissue were stained with hematoxylin and eosin (HE) after deparaffinization. The images were taken by a light microscope (Nikon Eclipse Ci-L, 40&#xd7; magnification). The top of the villus to the crypt transition was counted as villus length, while the crypt depth was recorded as the invagination between two villi. The intestinal villus length and crypt depth were measured in each sample <italic>via</italic> Image Pro Plus 6.0 software (Media Cybernetics, MD, United States).</p>
<p>In order to measure total mucins areas and quantities of goblet cells, tissue were stained with Alcian blue periodic acid Schiff staining kit (AB-PAS) (Solarbio, Beijing, China) after deparaffinization. The images were taken by a light microscope (Nikon Eclipse Ci-L, 200&#xd7; magnification). The total mucins areas and quantities of goblet cells in epithelial cells of the jejunum tissues were counted by Image pro plus software 6.0.</p>
</sec>
<sec id="s2_7">
<title>Immunohistochemistry and Immunofluorescence</title>
<p>Immunohistochemistry and immunofluorescence analysis were performed according to previous report from Ying et&#xa0;al. (<xref ref-type="bibr" rid="B26">26</xref>). For immunofluorescence, after deparaffinization, tissue sections were incubated with anti-mouse IgA (1:100) (Bioss, Beijing, China) primary antibody and conjugated FITC goat anti-rabbit antibody (1:400) for overnight. Then, DAPI (2 &#x3bc;g/ml) was used for nucleus staining. The images were taken by a fluorescence microscope (Nikon Eclipse Ci-L, 200&#xd7; magnification). The total quantities of IgA-secreting cells were counted by Image pro plus software 6.0.</p>
<p>For immunohistochemistry, after deparaffinization, tissue sections were blocked with 5% BSA and stained with primary antibodies anti-mouse CD4 (1:200) (Servicebio, Wuhan, China) overnight at 4&#xb0;C. Further, sections were treated with secondary antibody, peroxidase-conjugated goat anti-rabbit IgG secondary antibody (Bio-Rad, Hercules, CA, USA) with and then signals were detected using diaminobenzidine. The total quantities of CD4<sup>+</sup>T cells were counted by Image pro plus software 6.0.</p>
</sec>
<sec id="s2_8">
<title>Western Blot Analysis</title>
<p>Western blot analysis was performed according to previous report from Ying et&#xa0;al. (<xref ref-type="bibr" rid="B26">26</xref>). In short, small intestinal tissues (50 mg) were homogenized on ice in RIPA lysis buffer (Servicebio, Wuhan, China). Homogenate was rotated, and the supernatant was collected. The total protein concentration was measured by a BCA protein assay kit. Equal amount of protein (20&#x2013;40 &#xb5;g) were loaded and separated by SDS-PAGE, transferred to polyvinylidene difluoride membranes (Millipore, MA), and blocked with 7.5% non-fat milk. Membranes were blotted with primary antibodies, anti-mouse &#x3b2;-actin (1:3000), anti-mouse claudin-1(1:1000), anti-mouse occludin (1:1000) or anti-mouse ZO-1 (1:1000) (Servicebio, Wuhan, China), overnight at 4&#xb0;C, followed by 2&#xa0;h incubation with horseradish peroxidase conjugated secondary antibody. Immunoreactive proteins were detected by ECL plus Western Blotting Detection System and quantified by densitometric analysis (Geldoc 2000 image, BioRad, USA).</p>
</sec>
<sec id="s2_9">
<title>Gut Microbiota Analysis</title>
<p>DNA was extracted from fecal samples (50&#x2013;100 mg) and analyzed according to previous reports of Liu et&#xa0;al. (<xref ref-type="bibr" rid="B27">27</xref>). DNA from different samples was extracted using the E.Z.N.A. <sup>&#xae;</sup>Stool DNA Kit (D4015, Omega, Inc., USA) according to manufacturer&#x2019;s instructions. The microbiota composition was assessed by PCR targeting the V3-V4 region of the bacterial 16S rRNA gene with the primer 338F-806R (fwd 5&#x2032;-ACTCCTACGGGAGGCAGCAG-3&#x2032; and rev 5&#x2032;-GGACTACHVGGGTWTCTAAT-3&#x2032;). The PCR products were purified by AMPure XT beads (Beckman Coulter Genomics, Danvers, MA, USA) and quantified by Qubit (Invitrogen, USA). The amplicon pools were prepared for sequencing, and the size and quantity of the amplicon library were assessed on Agilent 2100 Bioanalyzer (Agilent, USA) and with the Library Quantification Kit for Illumina (Kapa Biosciences, Woburn, MA, USA), respectively. The libraries were sequenced on NovaSeq PE250 platform.</p>
<p>Samples were sequenced on an Illumina NovaSeq platform according to the manufacturer&#x2019;s recommendations, provided by LC-Bio Technology Co., Ltd (Hangzhou, Zhejiang Province, China). Paired-end reads were assigned to samples based on their unique barcode and truncated through cutting off the barcode and primer sequence, then were incorporated using FLASH (<xref ref-type="bibr" rid="B28">28</xref>). According to fqtrim (V 0.94), clean tags were acquired by the quality filtering on the raw reads. Chimeric sequences were filtered using Vsearch software (v2.3.4). Feature table and feature sequence were obtained after dereplicated by DADA2. The complexity of species diversity of each sample was reveal by alpha diversity, while Beta diversity evaluated the differences of samples in the complexity of species. Alpha diversity and beta diversity were calculated by normalized to the same sequences randomly with QIIME2. Refer to SILVA (release 132) classifier, feature abundance was normalized using relative abundance of each sample. Blast was used for sequence alignment, and the feature sequences were annotated with SILVA database for each representative sequence.</p>
</sec>
<sec id="s2_10">
<title>Fecal Metabolites Assessment</title>
<p>For fecal samples, refer to previous reports of Li et&#xa0;al. (<xref ref-type="bibr" rid="B29">29</xref>), 50 mg of lyophilized feces were extracted with 50% methanol buffer. The supernatants were further transferred into new 96&#x2010;well plates and were stored at &#x2212;80&#xb0;C prior to the LC&#x2010;MS analysis. All chromatographic separations were performed using an ultra-performance liquid chromatography (UPLC) system (SCIEX, UK). An ACQUITY UPLC T3 column (100&#xa0;mm &#xd7; 2.1&#xa0;mm, 1.8 &#xb5;m, Waters, UK) was used for the reversed phase separation. The column temperature was maintained at 35&#xb0;C and the flow rate was set as previously described (<xref ref-type="bibr" rid="B30">30</xref>). A high-resolution tandem mass spectrometer TripleTOF5600plus (SCEIX, UK) was used to detect metabolites eluted from the column. The Q-TOF was operated in both positive (5 kV) and negative ion (&#x2212;4.5 kV) modes. The mass spectrometry data were acquired in Interactive Disassembler Professional (IDA) mode, while the time-of-flight (TOF) mass ranged from 60 to 1200 Da (<xref ref-type="bibr" rid="B31">31</xref>). For the acquisition, the mass accuracy was calibrated every 20 samples, and a quality control (QC) samples was acquired from every 10 samples.</p>
<p>The acquired MS data was further processed by XCMS, CAMERA, and metaX toolbox with R software. Each ion was identified according to its retention time (RT) and m/z data. The metabolites were annotated through matching the precise molecular mass data (m/z) between sample and database (differences &lt; 10 ppm) in Human Metabolome Database (HMDB) and online Kyoto Encyclopedia of Genes and Genomes (KEGG) database. The molecular formula of the metabolites would be identified and validated by the isotopic distribution measurements, while an in-house fragment spectrum library was used to validate the metabolite identification. MetaX further preprocess the intensity of peak data. Supervised OPLS-DA between two groups was conducted though metaX to distinguish the different variables.</p>
</sec>
<sec id="s2_11">
<title>Statistical Analysis</title>
<p>The results of biological assay are presented as means &#xb1; SD. The differences between two groups were analyzed by Student&#x2019;s <italic>t</italic> test. Multiple group comparisons were analyzed using one-way analysis of variance (ANOVA) with Bonferroni correction. All results were considered statistically significant at <italic>P</italic> &lt; 0.05. The LEfSe method and the Kruskal-Wallis (KW) rank sum test was performed to identify features characterizing significant differences between two assigned classes. A value of LDA &gt; 3.2 and <italic>P</italic> &lt; 0.05 was considered statistically significant. Analysis of differential expression of metabolites was performed using <italic>P</italic> values and VIP values conducted by OPLS-DA. Correlations of genus in fecal flora and the fecal metabolites were determined by Spearman&#x2019;s rank correlation tests.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>AG Restored Intestinal Immune Disorder</title>
<sec id="s3_1_1">
<title>AG Treatments Adjusted Hematological Indices in CTX-Induced Immunosuppression Mice</title>
<p>In this study, hematological indices with significant differences among groups were performed (<xref ref-type="fig" rid="f1">
<bold>Figures 1A&#x2013;F</bold>
</xref>). White blood cells were consisted of&#xa0;lymphocytes (T cells and B cells), granulocytes (neutrophils, eosinophils, and basophils), and monocytes. Compared to control group, WBC, RBC, Lym, HGB (<italic>P </italic>&lt;0.001) were significant reduced and Neu (<italic>P </italic>&lt;0.05) decreased by CTX-treatment. All groups showed different degrees of repair by AG after CTX-induced immunotoxicity. AGP_AGG group has apparently increased Lym, Mon (<italic>P </italic>&lt;0.05) and RBC, HGB (<italic>P </italic>&lt;0.001). AGP group has significant increased WBC, RBC, HGB (<italic>P </italic>&lt;0.05) and Neu (<italic>P </italic>&lt;0.01). AGG group has significant increased WBC, HGB (<italic>P </italic>&lt;0.05), RBC, Mon (<italic>P </italic>&lt;0.01) and Neu (<italic>P </italic>&lt;0.001).</p>
<fig id="f1" position="float">
<label>Figure 1</label>
<caption>
<p>AG treatments adjusted hematological indices in CTX-induced immunosuppression mice. (n=7 for each group). <bold>(A)</bold> WBC. <bold>(B)</bold> RBC. <bold>(C)</bold> Lym. <bold>(D)</bold> HGB. <bold>(E)</bold> Neu. <bold>(F)</bold> Mon. <bold>(G)</bold> The quantity of CD3<sup>+</sup>T cells. <bold>(H)</bold> The percentage of CD3<sup>+</sup>CD4<sup>+</sup>T cells. <bold>(I)</bold> The percentage of CD3<sup>+</sup>CD8<sup>+</sup>T cells. <bold>(J)</bold> The quantity of NK cells. <bold>(K)</bold> The quantity of B cells. <bold>(L)</bold> The ratio of splenic CD4<sup>+</sup>/CD8<sup>+</sup> T cells. Data are expressed as mean with SD. <sup>#</sup>
<italic>P</italic> &lt; 0.05, <sup>##</sup>
<italic>P</italic> &lt; 0.01, <sup>###</sup>
<italic>P</italic> &lt; 0.001 compared with Ctrl;*<italic>P</italic> &lt; 0.05, **<italic>P</italic> &lt; 0.01, ***<italic>P</italic> &lt; 0.001 compared with CTX by student <italic>t</italic> test. Ctrl, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g001.tif"/>
</fig>
<p>Previous reports also shown the lymphocyte cell line is one of the most susceptible cell lines to the CTX (<xref ref-type="bibr" rid="B32">32</xref>). To further investigate the effect of AG on lymphocyte phenotypes, peripheral blood lymphocytes were investigated by determining the number of CD3<sup>+</sup>T cells, CD4<sup>+</sup>T cells, CD8<sup>+</sup>T cells, NK cells, and B cells by flow cytometry (<xref ref-type="fig" rid="f1">
<bold>Figures 1G&#x2013;L</bold>
</xref>). Compared to control group, the number of the B cells, CD3<sup>+</sup>T cells, and CD4<sup>+</sup>/CD8<sup>+</sup> ratio (<italic>P </italic>&lt;0.05) have been decreased by CTX-treatment, while the percentage of CD3<sup>+</sup>CD8<sup>+</sup>T cells (<italic>P </italic>&lt;0.05) has been increased by CTX treatment, respectively. In particular, NK cells has been significantly decreased by CTX treatment compared to control group (<italic>P </italic>&lt;0.01). Thereinto, compared to CTX group, AGP_AGG and AGG treatment have partially reverse the reduction of NK cells (<italic>P </italic>&lt;0.05), while AGP treatment has significant increased the percentage of CD3<sup>+</sup>CD4<sup>+</sup>T cells and the CD4<sup>+</sup>/CD8<sup>+</sup> ratio (<italic>P </italic>&lt;0.05).</p>
</sec>
<sec id="s3_1_2">
<title>AG Treatments Altered Immune Organ Indices in CTX-Induced Immunosuppression Mice</title>
<p>Additionally, compared to control group, CTX-treated mice significant decreased thymus and spleen indices (<italic>P </italic>&lt;0.001), respectively (<xref ref-type="fig" rid="f2">
<bold>Figures 2A, B</bold>
</xref>). There were no differences in spleen indices among other groups compared to CTX group (<xref ref-type="fig" rid="f2">
<bold>Figure 2D</bold>
</xref>). In thymus indices (<xref ref-type="fig" rid="f2">
<bold>Figure 2C</bold>
</xref>), compared to CTX group, AGG group rose (<italic>P </italic>&lt;0.01), while AGP_AGG rose significantly (<italic>P </italic>&lt;0.001).</p>
<fig id="f2" position="float">
<label>Figure 2</label>
<caption>
<p>AG treatments altered immune organ indices in CTX-induced immunosuppression mice. (n=7 for each group). <bold>(A)</bold> The proportion of splenic CD4<sup>+</sup> CD8<sup>+</sup>T cells was detected by flow cytometry. <bold>(B)</bold> The proportion of splenic NK1.1<sup>+</sup> CD19<sup>+</sup> cells was detected by flow cytometry. <bold>(C)</bold> Thymus index. <bold>(D)</bold> Spleen index. <bold>(E)</bold> The proportion of splenic NK cells. <bold>(F)</bold> The proportion of splenic B cells. <bold>(G)</bold> The ratio of splenic CD4<sup>+</sup>/CD8<sup>+</sup> T cells. Data are expressed as mean with SD. <sup>###</sup>
<italic>P</italic> &lt; 0.001 compared with Ctrl; *<italic>P</italic> &lt; 0.05, **<italic>P</italic> &lt; 0.01, ***<italic>P</italic> &lt; 0.001 compared with CTX by student <italic>t</italic> test. Ctrl, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g002.tif"/>
</fig>
<p>The ratios of different splenic lymphocytes also have been investigated by flow cytometry. As shown in <xref ref-type="fig" rid="f2">
<bold>Figures 2E&#x2013;G</bold>
</xref>, splenic and peripheral blood lymphocytes have very similar tendency. The percentage of the NK cells, B cells, CD4<sup>+</sup>/CD8<sup>+</sup> ratio have decreased by CTX-treatment (<italic>P </italic>&lt;0.001) compared to control group, respectively. Furthermore, compared to CTX group, the percentages of NK cells was activated by AGP_AGG (<italic>P </italic>&lt;0.05) and AGG treatment (<italic>P </italic>&lt;0.01), the percentage of B cells was rose by AGP_AGG (<italic>P </italic>&lt;0.001), AGP (<italic>P </italic>&lt;0.01), and AGG treatment (<italic>P</italic>&lt;0.001), while the CD4<sup>+</sup>/CD8<sup>+</sup> ratio was increased by AGP_AGG (<italic>P </italic>&lt;0.05), AGP (<italic>P </italic>&lt;0.01), and AGG treatment (<italic>P </italic>&lt;0.01).</p>
</sec>
<sec id="s3_1_3">
<title>AG Treatments Relived Intestinal Immune Disorder in CTX-Induced Immunosuppression Mice</title>
<p>The gastrointestinal tract also regarded as an organ of immunity that defense the damage from viruses, bacteria, and parasites. Immunohistochemistry and immunofluorescence were used to determine the number of CD4<sup>+</sup>T cells (<xref ref-type="fig" rid="f3">
<bold>Figures 3A, B</bold>
</xref>) and IgA-secreting cells (<xref ref-type="fig" rid="f3">
<bold>Figures 3C, D</bold>
</xref>) in small intestinal tissue, respectively. In contrast to control group, the number of CD4<sup>+</sup>T cells (<italic>P </italic>&lt;0.001), and IgA-secreting cells (<italic>P </italic>&lt;0.05) were significant decreased by CTX treatment. After AGP_AGG treatment, this group has promoted the formation of CD4<sup>+</sup>T cells (<italic>P </italic>&lt;0.05) and IgA-secreting cell (<italic>P </italic>&lt;0.01) compared to CTX group. AGG group has recovered the number of IgA-secreting cell (<italic>P </italic>&lt;0.01) after CTX treatment.</p>
<fig id="f3" position="float">
<label>Figure 3</label>
<caption>
<p>AG treatments relived intestinal immune disorder in CTX-induced immunosuppression mice. (n=5 for each group). <bold>(A, B)</bold> Immunohistochemical staining with CD4<sup>+</sup> of jejunum section (200 &#xd7;, Scale bar = 100 &#x3bc;m). <bold>(C, D)</bold> Immunofluorescence staining with IgA<sup>+</sup> and DAPI of jejunum section (200 &#xd7;, Scale bar = 100 &#x3bc;m). Data are expressed as mean with SD. <sup>#</sup>
<italic>P</italic> &lt; 0.05, <sup>###</sup>
<italic>P</italic> &lt; 0.001 compared with Ctrl; *<italic>P</italic> &lt; 0.05, **<italic>P</italic> &lt; 0.01, ***<italic>P</italic> &lt; 0.001 compared with CTX by student <italic>t</italic> test. Ctrl, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g003.tif"/>
</fig>
</sec>
</sec>
<sec id="s3_2">
<title>AG Treatments Alleviated Gut Barrier Disruption in CTX-Induced Mice</title>
<p>Previous paper has reported that the gastrointestinal damage of chemotherapy or high dose CTX treatment can lead to apoptosis of intestinal crypts. It induces the reduction of the villus height and crypt length (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B34">34</xref>). According to the histological section (<xref ref-type="fig" rid="f4">
<bold>Figures 4A, B</bold>
</xref>) of jejunum, CTX induced serious intestinal mucosa damage, which displayed obvious cell infiltration and edema. Also, the gland pattern has been impaired with lower villus height (VH)/crypt depth (CD) ratio compared to control group. The CTX plus different AGP_AGG (<italic>P </italic>&lt;0.001), AGP (<italic>P </italic>&lt;0.001) and AGG treatment (<italic>P </italic>&lt;0.05) significant increased VH/CD ratio, which showed moderate intestine injury compared to CTX group.</p>
<fig id="f4" position="float">
<label>Figure 4</label>
<caption>
<p>AG treatments alleviated gut barrier disruption in CTX-induced mice. (n=5 for each group). <bold>(A)</bold> HE staining of jejunum section (100 &#xd7;, Scale bar = 200 &#x3bc;m). <bold>(B)</bold> The ratio of villus height/crypt depth <bold>(C)</bold> AB-PAS staining of jejunum section. Black arrow represents goblet cells, while blue arrow represents mucins (100 &#xd7;, Scale bar = 200 &#x3bc;m). <bold>(D)</bold> The quantity of goblet cells/mm<sup>2</sup> <bold>(E)</bold> Mucin areas (mm<sup>2</sup>). <bold>(F)</bold> Western blot assay of the protein level of ZO-1, occludin, and claudin-1 in jejunum section. Data are expressed as mean with SD. ##<italic>P</italic> &lt; 0.01, ###<italic>P</italic> &lt; 0.001 compared with Ctrl;*<italic>P</italic> &lt; 0.05, **<italic>P</italic> &lt; 0.01, ***<italic>P</italic> &lt; 0.001 compared with CTX by student <italic>t</italic> test. Ctrl, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g004.tif"/>
</fig>
<p>The AB-PAS stained jejunum sections were showed in <xref ref-type="fig" rid="f4">
<bold>Figures 4C&#x2013;E</bold>
</xref>, which have the similar tendency toward HE-stained jejunum sections. The intestine structural integrity was destroyed by CTX with fewer goblet cells <italic>P </italic>&lt;0.01 and mucin areas (<italic>P </italic>&lt;0.01) compared to control group. However, AGP_AGG treatment partially reversed the number of goblet cells (<italic>P</italic> &lt;0.05) and mucin areas (<italic>P </italic>&lt;0.001) compared to CTX group.</p>
<p>Tight junction associated proteins including integral transmembrane proteins (e.fg. occludin, claudins), peripheral membrane adaptor proteins (e.g. zonula occludens) are explored in this study (<xref ref-type="fig" rid="f4">
<bold>Figure 4F</bold>
</xref>). ZO-1 (<italic>P </italic>&lt;0.001), occludin (<italic>P </italic>&lt;0.01), and claudin-1 (<italic>P </italic>&lt;0.01), these proteins have been significant decreased by CTX-treatment compared to control group. For ZO-1 and occludin proteins, both of the AGP_AGG and AGP group have similar effects in increasing the protein contents (<italic>P </italic>&lt;0.001 for ZO-1, <italic>P </italic>&lt;0.05 for occludin), which alleviated CTX-induced damage in tight junction proteins.</p>
<sec id="s3_2_1">
<title>AG Attenuated Gut Dysbiosis in CTX-Induced Mice</title>
<p>The high-throughput 16S rDNA pyrosequencing of fecal samples was analyzed to illustrate the regulatory effect of the AG on the gut microbiota. The common microbial &#x3b1;-diversity indices, such as Shannon index, has shown in <xref ref-type="fig" rid="f5">
<bold>Figure 5A</bold>
</xref>. The Shannon index was decreased by CTX-treatment (<italic>P </italic>&lt;0.001) in relative to control group. After AGP treatment, microbial community diversity and uniformity mildly reversed (<italic>P &lt;</italic>0.05) compared with CTX group. To visualize the overall microbial community structure differences, the &#x3b2;-diversity of microbial composition was calculated using unweighted UniFrac-based PCoA (<xref ref-type="fig" rid="f5">
<bold>Figure 5B</bold>
</xref>). It was obviously separated among CTX group and other groups, especially AGP group.</p>
<fig id="f5" position="float">
<label>Figure 5</label>
<caption>
<p>AG treatments attenuated gut dysbiosis in CTX-induced mice. (n=7 for each group). <bold>(A)</bold> Alpha-diversity estimators by Shannon indexes. Data are expressed as mean with SD. <bold>(B)</bold> Unweighted UniFrac distance-based principal coordinate analysis. <bold>(C)</bold> Bacterial taxonomic profiling at the phylum level. <bold>(D)</bold> Heat map of relative abundance of top 30 genus. In the middle panel, the differences of abundance distributions among genera between two groups were measured by the Wilcoxon rank-sum test, <italic>P &lt;</italic>0.05. White circles represent less abundant genera in CTRL, AGP_AGG, AGP, and AGG compared with CTX; Black diamonds represent more abundant genera in CTRL, AGP_AGG, AGP, and AGG compared with CTX. Asterisks represent genera whose abundance in CTRL mice was altered by CTX and then regulated by AGP_AGG. CTRL, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g005.tif"/>
</fig>
<p>The taxonomic composition of each group in phylum and genus level was analyzed. At the phylum level, <italic>Bacteroidetes, Firmicutes, Verrucomicrobia</italic> make up more than 90 percent of the microbiota among all groups (<xref ref-type="fig" rid="f5">
<bold>Figure 5C</bold>
</xref>). In this study, CTX group decreased the abundance of <italic>Bacteroidetes</italic> (<italic>P &gt;</italic>0.05) and <italic>Firmicutes</italic> (<italic>P &lt;</italic>0.05) compared to control group. In contrast to CTX group, the abundance of <italic>Bacteroidetes</italic> significantly increased in AGP group (<italic>P </italic>&lt;0.001). <italic>Bacteroidetes has</italic> been regarded as primary degraders of varieties of fiber polysaccharide, while <italic>Firmicutes</italic> tends to be particular for a select set of glycan (<xref ref-type="bibr" rid="B35">35</xref>). In genus level, the heatmap showed the top 30 genera among all groups (<xref ref-type="fig" rid="f5">
<bold>Figure 5D</bold>
</xref>). AGP and AGG group has different effects on relative abundances of microbial community composition, while AGP-AGG co-treated group has taken the advantage of both groups that has a closer evolutionary relationship to control group. By student <italic>t</italic> test, compared to CTX group, the genera of <italic>Eubacterium]_coprostanoligenes_group, Lactobacillus, Bifidobacterium, Parasutterella, Lachnospiraceae_unclassified, Clostridiales_unclassified, Anaerotignum, Muribaculaceae_unclassified</italic> were increased and were accompanied by decreased in the genera of <italic>Escherichia&#x2212;Shigella, Bacteroides, Rikenella, Rikenellaceae_RC9_gut_group, Ruminococcaceae_UCG&#x2212;014, Alloprevotella, Prevotellaceae_NK3B31_group</italic>, and <italic>Peptococcaceae_unclassified</italic>, after AGP-AGG treatment (<italic>P &lt;</italic>0.05). Among them, AGP_AGG intervention significant reversed the relative abundance of eight genera (five up-regulated and three down-regulated, Asterisks in <xref ref-type="fig" rid="f5">
<bold>Figure 5D</bold>
</xref>) that induced by CTX-treatment.</p>
<p>To find the key phylotypes and biomarkers of gut microbiota among various groups, the LDA analysis is displayed (<xref ref-type="fig" rid="f6">
<bold>Figure 6</bold>
</xref>). Among the cross-comparisons of different groups (CTRL vs CTX, AGP_AGG vs CTX, AGP vs CTX, AGG vs CTX), LDA results showed 55 discriminative features in genus level (LDA score &gt;3.2, <italic>P&lt;</italic>0.05). Compared to control group, CTX group increased <italic>g_Akkermansia, g_Alloprevotella, g_Prevotellaceae_NK3B31_group, g_Ruminococcus_2, g_Paludibacter, g_Dysgonomonas, g_3M1PL1_52_termite_group_unclassified</italic>, and decreased <italic>g_Alistipes, g_Candidatus_Saccharimonas, g_Clostridiales_unclassified</italic>, <italic>g_Lachnospiraceae_unclassified, g_Muribaculum, g_Lachnospraceae_NK4A136_group, g_Lactobacillus.</italic> In contrast to CTX group, AGP_AGG treatment enriched <italic>g_Eubacterium_coprostanoligenes group, g_Parasutterella, g_Anaerotignum, g_Lachnospiraceae_unclassified, g_Bifidobacterium, g_Clostridiales_unclassified, g_Muribaculaceae_unclassified</italic>, while decreased <italic>g_Alloprevotella, g_Bacteroides, g_Ruminococcaceae_UCG-014, g_Prevotellaceae_NK3B31_group, g_Escherichia-Shigella.</italic>
</p>
<fig id="f6" position="float">
<label>Figure 6</label>
<caption>
<p>Bacterial communities&#x2019; differences obtained by linear discriminant analysis (LDA) analysis. <bold>(A)</bold> LDA results between the CTRL and CTX groups. <bold>(B)</bold> LDA results between the AGP_AGG and CTX groups. <bold>(C)</bold> LDA results between the AGP and CTX groups. <bold>(D)</bold> LDA results between the AGG and CTX groups. Only the genus level with a significant logarithmic LDA threshold score of &gt; 3.2, Wilcoxon rank-sum test, p &lt; 0.05 were shown. Different-colored regions represent different groups. CTRL, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g006.tif"/>
</fig>
</sec>
<sec id="s3_2_2">
<title>AG Treatments Alters Fecal Metabolites in CTX-Induced Mice</title>
<p>The complex interactions between host and gut microbiota are intense associated with host-microbe metabolic axes. Notably, gut microbiota plays an essential role in immunometabolism through their metabolites such as short-chain fatty acids, bile acids, and amino acids (<xref ref-type="bibr" rid="B36">36</xref>). Hence, the untargeted metabolomics analysis was generated on fecal samples by ultra-high performance liquid chromatography-quadrupole time-of flight mass spectrometry (UPLC-QTOF/MS). There were overall 680 and 979 metabolites has been identified in feces, under negative and positive mode, respectively. The orthogonal partial least squares&#x2013;discrimination analysis (OPLS-DA) was applied to distinct control group with CTX group (CTRL vs CTX, <xref ref-type="fig" rid="f7">
<bold>Figure 7A</bold>
</xref>), as well as the AG supplement group with CTX group (AGP_AGG vs CTX, <xref ref-type="fig" rid="f7">
<bold>Figure 7C</bold>
</xref>; AGP vs CTX, <xref ref-type="supplementary-material" rid="SF1">
<bold>Figure S1A</bold>
</xref>; AGG vs CTX, <xref ref-type="supplementary-material" rid="SF1">
<bold>Figure S1D</bold>
</xref>). The R<sup>2</sup> and Q<sup>2</sup> of OPLS-DA score analysis were summarized in <xref ref-type="supplementary-material" rid="SF3">
<bold>Table S2</bold>
</xref>, validating the good classification for the model. Metabolites with <italic>VIP</italic> values &gt;1.0 and <italic>P</italic> value &lt;0.05 were considered significantly change. These altered metabolites were further generated the KEGG metabolic pathways by MetaboAnalyst (<uri xlink:href="https://www.metaboanalyst.ca">www.metaboanalyst.ca</uri>) between CTRL vs CTX (<xref ref-type="fig" rid="f7">
<bold>Figure 7B</bold>
</xref>), AGP_AGG vs CTX (<xref ref-type="fig" rid="f7">
<bold>Figure 7D</bold>
</xref>), AGP vs CTX (<xref ref-type="supplementary-material" rid="SF1">
<bold>Figure S1B</bold>
</xref>), AGG vs CTX (<xref ref-type="supplementary-material" rid="SF1">
<bold>Figure S1D</bold>
</xref>), respectively. Compare between control group and CTX group, biosynthesis of unsaturated fatty acids, phenylalanine metabolism, purine metabolism, glycerophospholipid metabolism, thiamine metabolism, and pyrimidine metabolism (<italic>P &lt;</italic>0.05) were significant enriched. Linoleic acid metabolism, glycerolipid metabolism, phenylalanin metabolism, arachidonic acid metabolism, and biosynthesis of unsaturated fatty acids (<italic>P &lt;</italic>0.05) were the markedly enriched between AGP_AGG and CTX group. By cross-comparisons of AGP_AGG vs CTX and CTX vs CTRL group, both CTX group and AGP_AGG group has great effects on biosynthesis of unsaturated fatty acids, phenylalanin, purine, and glycerophospholipid metabolism. It implicated AGP_AGG group might partially reverse some of the side effects of CTX-treated through these metabolisms.</p>
<fig id="f7" position="float">
<label>Figure 7</label>
<caption>
<p>AG treatments alters fecal metabolites in CTX-induced mice. (n=7 for each group). <bold>(A)</bold> OPLS-DA score plots from CTRL group vs CTX group. <bold>(B)</bold> Pathway Enrichment based on altered metabolites from CTRL group vs CTX group. <bold>(C)</bold> OPLS-DA score plots from AGP_AGG group vs CTX group. <bold>(D)</bold> Pathway Enrichment based on altered metabolites between AGP_AGG group and CTX group. CTRL, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g007.tif"/>
</fig>
<p>To further illustrate the biomarkers of AGP_AGG treatment group, the endogenous metabolites with fold change &gt; 3 or &lt;1/3 was selected as important features. The cross-comparisons of different groups were listed (<xref ref-type="supplementary-material" rid="SF4">
<bold>Table S3</bold>
</xref>). CTX treatment has triggered extensive change in endogenous metabolites, in which 46 increased and 9 decreased, respectively, compared with control group. CTX treatment significant increased the metabolites related to purine metabolism (guanosine, inosine, uric acid, xanthosine), propanoate metabolism (succinic acid, propionic acid), and decreased the metabolites associated with thiamine metabolism (thiamine, 5-(2-Hydroxyethyl)-4-methylthiazole). AGP_AGG treatment has induced 22 metabolites and 18 repressed metabolites compared with CTX group (<xref ref-type="fig" rid="f8">
<bold>Figure 8A</bold>
</xref>). 24 (60.0%) of differential metabolites between AGP_AGG treatment and CTX group were lipid and lipid-like molecules, which involved in arachidonic acid metabolism, linoleic acid metabolism, glycerophospholipid metabolism, and so on. AGP_AGG treatment has partially abrogated 14 metabolites change (12 down-regulated and 2 up-regulated) induced upon CTX-treatment (asterisks in <xref ref-type="fig" rid="f8">
<bold>Figure 8A</bold>
</xref>). Taken together, the remarkable change of metabolites was summarized in <xref ref-type="fig" rid="f8">
<bold>Figure 8B</bold>
</xref>, which involved in amino acids, fatty acids, and carbohydrate metabolisms.</p>
<fig id="f8" position="float">
<label>Figure 8</label>
<caption>
<p>Heatmap and metabolic network analysis of the identified metabolites. <bold>(A)</bold> Heatmaps of the differential metabolites that were altered by CTX compared with AGP_AGG mice. Asterisks represent metabolites whose abundance in CTRL mice was altered by CTX and then regulated by AGP_AGG. <bold>(B)</bold> The profile of metabolic network analysis of the identified metabolites based on the known metabolic pathways. Red color represents significantly increased metabolites in CTX group, while green represents decreased dramatically, compared to CTRL group. &#x201c;&#x2191;&#x2193;&#x201d; describes metabolites that were significantly up- or down-regulated after AGP_AGG treatment. FFA, free fatty acid; AC, acylcarnitine; CTRL, control group; CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g008.tif"/>
</fig>
<p>As shown in <xref ref-type="fig" rid="f9">
<bold>Figure 9</bold>
</xref>, the 16 most differential fecal microbiota in genus level and 40 differential metabolites were conducted the Spearman&#x2019;s correlation analysis to identify microbes-metabolites relationship upon AGP_AGG treatment. Strong correlations (<italic>P&lt;</italic>0.05) were observed in 436 microbes-metabolites pairs. Metabolites such as uric acid, was significant decreased after AGP_AGG treatment and showed a strong positive correlation (<italic>P&lt;</italic>0.01) with <italic>g_Alloprevotella, g_Escherichia-Shigella, g:Prevotellaceae_NK3B31_group, g:Rikenellaceae_RC9_gut_group, g:Ruminococcaceae_UCG-014</italic>, and a strong negative correlation (<italic>P&lt;</italic>0.01) with <italic>g_Bifidobacterium, g_Clostridiales_unclassified</italic>. The increased metabolites such as 9,10-Dihydroxy-12Z-octadecenoic acid, acylcarnitine 25:3, and FAHFA 20:0; FAHFA(2:0/18:0) that related to energy metabolism were positively correlated with <italic>g_Bifidobacterium, g_Clostridiales_unclassified, g_Anaerotignum, g_Lachnospiraceae_unclassified, g_Parasutterella</italic> (<italic>P&lt;</italic>0.01), and negatively correlated with <italic>g_Escherichia-Shigella, g_Ruminococcaceae_UCG-014, g_Prevotellaceae_NK3B31_group, g_Rikenella</italic> (<italic>P&lt;</italic>0.01).</p>
<fig id="f9" position="float">
<label>Figure 9</label>
<caption>
<p>Correlation analysis of the gut microbiome and fecal metabolites as well as relationship. Spearman&#x2019;s rank correlation between 16 most differential genera and 40 differential metabolites from AGP_AGG group vs CTX group. *<italic>P</italic>&lt;0.05, **<italic>P</italic>&lt;0.01 denoted statistical significance between bacterial taxa and metabolites.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g009.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>CTX is an alkylating agent and widely used in cancer treatments. However, it has various toxicities not only in cancer cells but also in rapidly dividing cells, such as immune cells and epithelial cells. High dose of CTX treatment can lead to immunosuppressive effects, damage of intestinal epithelium, and dysfunction of gut microbiota (<xref ref-type="bibr" rid="B37">37</xref>, <xref ref-type="bibr" rid="B38">38</xref>). AG is a general tonics to maintain human body homeostasis and also has been applied as immune-modulator in various diseases (<xref ref-type="bibr" rid="B2">2</xref>). Furthermore, both ginsenoside and polysaccharides of AG have been reported with their immunostimulating actions <italic>in vitro</italic> and vivo, respectively (<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B39">39</xref>, <xref ref-type="bibr" rid="B40">40</xref>). In this study, we confirmed the immunomodulatory capacity of AG in mucosal, systemic immunity, and gut barrier protection effect using a CTX-induced immunosuppressed mice model, which co-treated with polysaccharide and ginsenoside.</p>
<p>Intestine is not only the largest digestion and absorption organ, but also involves mucosal immunity in human body that nourish up to 70% of the body&#x2019;s lymphocytes population (<xref ref-type="bibr" rid="B41">41</xref>). CD4<sup>+</sup>T cells are essential for intestinal immune homeostasis by discriminating between harmless stimuli and harmful pathogens. CD4<sup>+</sup>T cells are mostly located in the lamina propria of intestine and participate in the immune response through the release of various pro- and anti-inflammatory cytokines and the secretion of co-stimulatory molecules. Furthermore, activated CD4<sup>+</sup>T cells can differentiate into various T helper cells with different effector functions, such as response in cancer immunotherapy (<xref ref-type="bibr" rid="B42">42</xref>, <xref ref-type="bibr" rid="B43">43</xref>). IgA from B cells is the most prevalent immunoglobulin in the human body and is the essential effector molecules to protect mucosal surfaces against infections in the intestine. Hence, IgA synthesis and secretion has been regarded as the most recognized characteristic in mucosal immunity (<xref ref-type="bibr" rid="B44">44</xref>, <xref ref-type="bibr" rid="B45">45</xref>). In this study, co-treated of AGP_AGG could alleviate mucosal immunosuppression by stimulating the formation of both CD4<sup>+</sup>T cells and IgA-secreting cells in small intestine.</p>
<p>The gastrointestinal tract mucosa is the largest interface that interacts between host and external environment. Besides being a physical barrier, the intestinal epithelial barrier communicates with gut microbiota and immune cells to maintain the gut homeostasis. In specific, goblet cells are particular epithelial cells in mucosal surface and maintain the mucosal barriers through the secretion of mucus. Also, goblet cells involve in mucosal immunity over secretion of anti-microbial proteins, chemokines, and cytokines (<xref ref-type="bibr" rid="B46">46</xref>). Tight junctions play essential roles in physical intestinal barrier and their dysfunction is highly associated with metabolic and inflammatory diseases (<xref ref-type="bibr" rid="B47">47</xref>). In this study, AG, especially AGP_AGG groups could restore the intestinal barrier damage in epithelial cells as well as tight junction proteins.</p>
<p>Our study showed the combination use of AG polysaccharide and ginsenoside has a better effect in modulation of mucosal immunity and protection of gut barrier. On the one hand, studies reported that ginsenosides Rb1 could stimulate the phagocytic capacity of macrophages for bacteria <italic>via</italic> activation of the Fc-gamma receptors and p38/Akt pathway (<xref ref-type="bibr" rid="B48">48</xref>), while the combination use of ginsenoside Rg3, Rk1, Rg5 could stimulate immune reactions through nuclear factor-kappa B (NF-&#x3ba;B) and cytokine secretion (<xref ref-type="bibr" rid="B49">49</xref>, <xref ref-type="bibr" rid="B50">50</xref>). In addition, polysaccharides could potentially activate receptors like Toll-like receptors (TLRs), C-type lectin receptors, and so on (<xref ref-type="bibr" rid="B51">51</xref>), which are the key receptors related to intestinal immunity against pathogen (<xref ref-type="bibr" rid="B52">52</xref>, <xref ref-type="bibr" rid="B53">53</xref>). On the other hand, many studies have suggested that even though polysaccharides is non-digestible, it was still used as immunomodulator. Non starch polysaccharides might be recognized as potential prebiotics altering the composition of gut microbiota or can be transformed into short chain fatty acids that further participate into immune pathways (<xref ref-type="bibr" rid="B54">54</xref>, <xref ref-type="bibr" rid="B55">55</xref>). Commensal microorganisms&#xa0;are essential for the development and maturation of immune system. Also, prebiotics can reduce the plasma endotoxemia and improve the gut barrier integrity (<xref ref-type="bibr" rid="B56">56</xref>). Previous report demonstrated polysaccharide-mediated gut microbiota improved the metabolism and absorption of ginsenoside that lead to the synergistic effect of ginseng decoction (<xref ref-type="bibr" rid="B57">57</xref>).</p>
<p>To identify the crucial bacteria and the underlying mechanisms of the AG immuno-modulator actions, the gut microbiota in different levels were investigated. Consistent with previous reports, the AG polysaccharide restored the microbial community diversity and uniformity, together with the microbial community composition in phylum level. In genus level, AGP-AGG co-treated group has taken the advantage of polysaccharide and ginsenoside that similar to control group. Also, an increase of immunomodulatory potential bacteria and a decrease of pathogenic bacteria were observed in AGG_AGP group. LDA analysis also has been performed to identify the specific bacteria related to AGP_AGG, AGP, AGG, as well as CTX group. <italic>Lactobacillus</italic> and <italic>Bifidobacterium</italic> are well known probiotics for promoting mucosal immunity in enhancing CD<sup>+</sup> T cell&#x2013;dendritic cell interactions, lymphocyte proliferation, and cytokine secretion (<xref ref-type="bibr" rid="B58">58</xref>, <xref ref-type="bibr" rid="B59">59</xref>). Also, these probiotics strengthen the barrier integrity by activating enterocytes express epithelial growth factor receptor (EGF-R), increasing intestinal mucins, and stimulating IgA production (<xref ref-type="bibr" rid="B60">60</xref>). <italic>Parasutterella</italic> has been regarded as a core component of the human and mouse gut microbiota and always positively correlated with health index (<xref ref-type="bibr" rid="B61">61</xref>). <italic>Lachnospiraceae</italic> is known as butyrate-producing bacteria and antagonize <italic>Clostridium difficile</italic> infection. Butyrate has been reported for its trophic effect on mucosa (<xref ref-type="bibr" rid="B62">62</xref>). <italic>Eubacterium_coprostanoligenes</italic>, a gram-positive coccobacillus, has been reported that contributed to cholesterol reduction (<xref ref-type="bibr" rid="B63">63</xref>). Selected strains of <italic>Clostridiales</italic> could induce Treg cells development independent of MyD88-signaling and might attribute to short-chain fatty acids (SCFAs) (<xref ref-type="bibr" rid="B64">64</xref>, <xref ref-type="bibr" rid="B65">65</xref>). According to previous studies, cyclophosphamide can lead to disruption of the gut microbiota. Especially in high dose of cyclophosphamide leaded to increase various of pathogenic counts, such as <italic>Escherichia coli</italic> and so on (<xref ref-type="bibr" rid="B38">38</xref>). In this study, <italic>Dysgonomonas</italic> has been identified as the biomarker of CTX group in this study, which can cause gastroenteritis in immunocompromised patient (<xref ref-type="bibr" rid="B66">66</xref>). <italic>Escherichia&#x2212;Shigella</italic> has been decreased after AGP_AGG treatment, which produces shigatoxin during infection and causes various life-threatening disease (<xref ref-type="bibr" rid="B67">67</xref>). <italic>Peptococcaceae</italic> may be or not being pathogenic and might relate to stress and diet (<xref ref-type="bibr" rid="B68">68</xref>).</p>
<p>The disordered metabolic environment induced by CTX treatment can lead to various side effects on gut. AGP_AGG treatment group corrected some disordered metabolites such as uric acid, lysoPE 15:0 and lysoPI 18:0. Purines act various functions in cells such as components of DNA and RNA, as energy sources. However, the abnormal elevated of the final product of purine metabolism in urine or serum, uric acid, is always related to gout, kidney, and vascular disorders (<xref ref-type="bibr" rid="B69">69</xref>) as well as damage of intestinal barriers (<xref ref-type="bibr" rid="B70">70</xref>). Lysophospholipids (LPLs) can act through G protein-coupled receptors and play essential roles in immune cell trafficking. However, dysfunction of LPLs, such as hyperlipidemia, can induce endothelial cell activation and injury (<xref ref-type="bibr" rid="B71">71</xref>). In addition, AGG_AGP varied many metabolites that have been implicated to have strong associations with immune cells or protective effect of gut dysbiosis. Immune cells utilize the same pathways as other cells to generate energy and make sure their proper functioning. Hence, immunometabolism, as a new branch of metabolism, notably amino acids, fatty acids, glucose, is essential needed for immune cells on homeostasis or pathological state. The metabolites of some amino acids, such as tryptophan, are related to cell proliferation and growth processes (<xref ref-type="bibr" rid="B71">71</xref>). Xanthurenic acid is one of tryptophan metabolites in the kynurenine pathway and regarded as aryl hydrocarbon receptors (AhR) ligands. AhR is an essential regulator of intestinal immunity, inflammation as well as maintenance of gut homeostasis (<xref ref-type="bibr" rid="B72">72</xref>). Fatty acid oxidation can be utilized as an energy production in mitochondria that also involved in immune cells. Aerobic glycolysis is a sign of activated CD8<sup>+</sup>T cells, both naive and memory T cells depend on oxidative phosphorylation. T native cells oxidize external lipids in mitochondrion and utilize as energy source, which found abundant acylcarnitine molecules in metabolomic analysis of these cells (<xref ref-type="bibr" rid="B73">73</xref>). 9, 10-DHOME is a derivative of linoleic acid diol as well as a proliferator-activated receptor&#xa0;(PPAR)&#xa0;gamma 2 ligand. PPAR-gamma is a lipid -activated transcription factor that regulates a host of gene related to lipid metabolism (<xref ref-type="bibr" rid="B73">73</xref>) and also regulate differentiation and development of immune cells, such as monocytes, T cells, and NK cells (<xref ref-type="bibr" rid="B74">74</xref>). The metabolites variations resulted by AGP_AGG supplement might also play a protective role in chemotherapy induced gut dysfunction. Numerous evidence has reported omega-3 PUFAs including docosahexaenoic acid (DHA) ameliorated inflammation and improved wound healing that related to chemopreventive potential in cancer (<xref ref-type="bibr" rid="B75">75</xref>). 13-HDoHE as an oxidation product of DHA also attracted much attentions for its possibility in anti-inflammation effect (<xref ref-type="bibr" rid="B76">76</xref>). The PC and lysophosphatidylcholines (LPC), can mutually transform to each other and have reported the increase in blood might be related to evoke of oxidative stress (<xref ref-type="bibr" rid="B77">77</xref>).</p>
</sec>
<sec id="s5">
<title>Conclusion</title>
<p>In summary (<xref ref-type="fig" rid="f10">
<bold>Figure 10</bold>
</xref>), our work investigated the immunostimulatory effects of the main constituents of AG. It suggests that AG effectively restored intestinal immune disorder, recovered impaired mucosal integrity, and attenuated intestinal microbiota dysfunction. In particular, this work revealed co-treated of AG polysaccharide and ginsenoside alleviated the side effects of CTX <italic>via</italic> regulating gut microbiota and related metabolism. The increase of benefit bacteria <italic>Lactobacillus, Bifidobacterium, Parasutterella, Lachnospiraceae, Eubacterium_coprostanoligenes, Clostridiales</italic> as well as metabolites xanthurenic acid, acylcarnitine, 9, 10-DHOME,&#xa0;13-HDoHE were related to the therapeutic effects of AGP_AGG.</p>
<fig id="f10" position="float">
<label>Figure 10</label>
<caption>
<p>Summarized mechanisms underlying the immunomodulatory effect of AG on CTX induced intestinal immune disorder and gut barrier dysfunction.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-665901-g010.tif"/>
</fig>
</sec>
<sec id="s6">
<title>Data Availability Statement</title>
<p>The 16S rRNA sequencing data has been uploaded to NCBI - Bioproject, ID: PRJNA702634.</p>
</sec>
<sec id="s7">
<title>Ethics Statement</title>
<p>The animal study was reviewd and approved by the Institutional Animal Care and Use Committee (IACUC) of the Institute of Chinese Medicine, Hunan Academy of Chinese Medicine (Hunan, China).</p>
</sec>
<sec id="s8">
<title>Author Contributions</title>
<p>RZ, HZ, HL, and LH conceived and designed the study. RZ, HZ, DH, and QZ performed the experiments. RZ, HZ, and JX analyzed the data, drawn the figure and written the manuscript. LH and HL revised the manuscript, obtained the funding, and supervised the whole study. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>This study was supported by Natural Science Foundation of China (81891013, 81891010) and Construction Project of Sustainable Use of Precious Chinese Medicine Resources (2060302).</p>
</sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fimmu.2021.665901/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fimmu.2021.665901/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Image_1.jpeg" id="SF1" mimetype="image/jpeg">
<label>Supplementary Figure 1</label>
<caption>
<p>AG treatments alters fecal metabolites in CTX-induced mice. (n=7 for each group). <bold>(A)</bold> OPLS-DA score plots from AGP group vs CTX group. <bold>(B)</bold> Pathway Enrichment based on altered metabolites from AGP group vs CTX group. <bold>(C)</bold> OPLS-DA score plots from AGG group vs CTX group. <bold>(D)</bold> Pathway Enrichment based on altered metabolites between AGG group and CTX group. CTX, cyclophosphamide-induced immunosuppressive group; AGP_AGG, American ginseng polysaccharide+American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group; AGP, American ginseng polysaccharide with cyclophosphamide-induced immunosuppressive group; AGG, American ginseng ginsenoside with cyclophosphamide-induced immunosuppressive group.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.xlsx" id="SF2" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
<supplementary-material xlink:href="Table_2.xls" id="SF3" mimetype="application/vnd.ms-excel"/>
<supplementary-material xlink:href="Table_3.xls" id="SF4" mimetype="application/vnd.ms-excel"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<label>1</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Szczuka</surname> <given-names>D</given-names>
</name>
<name>
<surname>Nowak</surname> <given-names>A</given-names>
</name>
<name>
<surname>Zak&#x142;os-Szyda</surname> <given-names>M</given-names>
</name>
<name>
<surname>Kochan</surname> <given-names>E</given-names>
</name>
<name>
<surname>Szyma&#x144;ska</surname> <given-names>G</given-names>
</name>
<name>
<surname>Motyl</surname> <given-names>I</given-names>
</name>
<etal/>
</person-group>. <article-title>American Ginseng (Panax quinquefolium L.) as a Source of Bioactive Phytochemicals with Pro-Health Properties</article-title>. <source>Nutrients</source> (<year>2019</year>) <volume>11</volume>:<elocation-id>1041</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/nu11051041</pub-id>
</citation>
</ref>
<ref id="B2">
<label>2</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Riaz</surname> <given-names>M</given-names>
</name>
<name>
<surname>Rahman</surname> <given-names>NU</given-names>
</name>
<name>
<surname>Zia-Ul-Haq</surname> <given-names>M</given-names>
</name>
<name>
<surname>Jaffar</surname> <given-names>HZE</given-names>
</name>
<name>
<surname>Manea</surname> <given-names>R</given-names>
</name>
</person-group>. <article-title>Ginseng: A dietary supplement as immune-modulator in various diseases</article-title>. <source>Trends Food Sci Technol</source> (<year>2018</year>) <volume>83</volume>:<fpage>12</fpage>&#x2013;<lpage>30</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.tifs.2018.11.008</pub-id>
</citation>
</ref>
<ref id="B3">
<label>3</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Xie</surname> <given-names>JT</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>JA</given-names>
</name>
<name>
<surname>Mehendale</surname> <given-names>S</given-names>
</name>
<name>
<surname>Aung</surname> <given-names>HH</given-names>
</name>
<name>
<surname>Yuan</surname> <given-names>CS</given-names>
</name>
</person-group>. <article-title>Anti-hyperglycemic effect of the polysaccharides fraction from American ginseng berry extract in ob/ob mice</article-title>. <source>Phytomedicine</source> (<year>2004</year>) <volume>11</volume>:<page-range>182&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1078/0944-7113-00325</pub-id>
</citation>
</ref>
<ref id="B4">
<label>4</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Assinewe</surname> <given-names>VA</given-names>
</name>
<name>
<surname>Arnason</surname> <given-names>JT</given-names>
</name>
<name>
<surname>Aubry</surname> <given-names>A</given-names>
</name>
<name>
<surname>Mullin</surname> <given-names>J</given-names>
</name>
<name>
<surname>Lemaire</surname> <given-names>I</given-names>
</name>
</person-group>. <article-title>Extractable polysaccharides of Panax quinquefolius L. (North American ginseng) root stimulate TNFalpha production by alveolar macrophages</article-title>. <source>Phytomedicine</source> (<year>2002</year>) <volume>9</volume>:<fpage>398</fpage>&#x2013;<lpage>404</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1078/09447110260571625</pub-id>
</citation>
</ref>
<ref id="B5">
<label>5</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Xie</surname> <given-names>JT</given-names>
</name>
<name>
<surname>Mehendale</surname> <given-names>SR</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>A</given-names>
</name>
<name>
<surname>Han</surname> <given-names>AH</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>JA</given-names>
</name>
<name>
<surname>Osinski</surname> <given-names>J</given-names>
</name>
<etal/>
</person-group>. <article-title>American ginseng leaf: ginsenoside analysis and hypoglycemic activity</article-title>. <source>Pharmacol Res</source> (<year>2004</year>) <volume>49</volume>:<page-range>113&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.phrs.2003.07.015</pub-id>
</citation>
</ref>
<ref id="B6">
<label>6</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fujimoto</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>H</given-names>
</name>
<name>
<surname>Satoh</surname> <given-names>M</given-names>
</name>
<name>
<surname>Takeuchi</surname> <given-names>N</given-names>
</name>
</person-group>. <article-title>Polyacetylenes from Panax quinquefolium</article-title>. <source>Phytochemistry</source> (<year>1994</year>) <volume>35</volume>:<page-range>1255&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/S0031-9422(00)94831-3</pub-id>
</citation>
</ref>
<ref id="B7">
<label>7</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname> <given-names>M</given-names>
</name>
<name>
<surname>Guilbert</surname> <given-names>LJ</given-names>
</name>
<name>
<surname>Ling</surname> <given-names>L</given-names>
</name>
<name>
<surname>Li</surname> <given-names>J</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>S</given-names>
</name>
<etal/>
</person-group>. <article-title>Immunomodulating activity of CVT-E002, a proprietary extract from North American ginseng (Panax quinquefolium)</article-title>. <source>J Pharm Pharmacol</source> (<year>2001</year>) <volume>53</volume>:<page-range>1515&#x2013;23</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1211/0022357011777882</pub-id>
</citation>
</ref>
<ref id="B8">
<label>8</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mochizuki</surname> <given-names>M</given-names>
</name>
<name>
<surname>Yoo</surname> <given-names>YC</given-names>
</name>
<name>
<surname>Matsuzawa</surname> <given-names>K</given-names>
</name>
<name>
<surname>Sato</surname> <given-names>K</given-names>
</name>
<name>
<surname>Saiki</surname> <given-names>I</given-names>
</name>
<name>
<surname>Tonooka</surname> <given-names>S</given-names>
</name>
<etal/>
</person-group>. <article-title>Inhibitory effect of tumor metastasis in mice by saponins, ginsenoside-Rb2, 20(R)- and 20(S)-ginsenoside-Rg3, of red ginseng</article-title>. <source>Biol Pharm Bull</source> (<year>1995</year>) <volume>18</volume>:<page-range>1197&#x2013;202</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1248/bpb.18.1197</pub-id>
</citation>
</ref>
<ref id="B9">
<label>9</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Keum</surname> <given-names>YS</given-names>
</name>
<name>
<surname>Park</surname> <given-names>KK</given-names>
</name>
<name>
<surname>Lee</surname> <given-names>JM</given-names>
</name>
<name>
<surname>Chun</surname> <given-names>KS</given-names>
</name>
<name>
<surname>Surh</surname> <given-names>YJ</given-names>
</name>
</person-group>. <article-title>Antioxidant and anti-tumor promoting activities of the methanol extract of heat-processed ginseng</article-title>. <source>Cancer Lett</source> (<year>2000</year>) <volume>150</volume>:<page-range>41&#x2013;8</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/S0304-3835(99)00369-9</pub-id>
</citation>
</ref>
<ref id="B10">
<label>10</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nakata</surname> <given-names>H</given-names>
</name>
<name>
<surname>Kikuchi</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Tode</surname> <given-names>T</given-names>
</name>
<name>
<surname>Hirata</surname> <given-names>J</given-names>
</name>
<name>
<surname>Shinomiya</surname> <given-names>N</given-names>
</name>
</person-group>. <article-title>Inhibitory effects of ginsenoside Rh2 on tumor growth in nude mice bearing human ovarian cancer cells</article-title>. <source>Cancer Sci</source> (<year>2010</year>) <volume>89</volume>:<page-range>733&#x2013;40</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/j.1349-7006.1998.tb03278.x</pub-id>
</citation>
</ref>
<ref id="B11">
<label>11</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hasegawa</surname> <given-names>H</given-names>
</name>
<name>
<surname>Suzuki</surname> <given-names>R</given-names>
</name>
<name>
<surname>Nagaoka</surname> <given-names>T</given-names>
</name>
<name>
<surname>Tezuka</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Kadota</surname> <given-names>S</given-names>
</name>
</person-group>. <article-title>Prevention of Growth and Metastasis of Murine Melanoma through Enhanced Natural-Killer Cytotoxicity by Fatty Acid-Conjugate of Protopanaxatriol</article-title>. <source>Biol Pharm Bull</source> (<year>2002</year>) <volume>25</volume>:<page-range>861&#x2013;6</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1248/bpb.25.861</pub-id>
</citation>
</ref>
<ref id="B12">
<label>12</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Biondo</surname> <given-names>PD</given-names>
</name>
<name>
<surname>Goruk</surname> <given-names>S</given-names>
</name>
<name>
<surname>Ruth</surname> <given-names>MR</given-names>
</name>
<name>
<surname>Connell</surname> <given-names>EO'</given-names>
</name>
<name>
<surname>Field</surname> <given-names>CJ</given-names>
</name>
</person-group>. <article-title>Effect of CVT-E002 (COLD-fX) versus a ginsenoside extract on systemic and gut-associated immune function</article-title>. <source>Int Immunopharmacol</source> (<year>2008</year>) <volume>8</volume>:<page-range>1134&#x2013;42</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.intimp.2008.04.003</pub-id>
</citation>
</ref>
<ref id="B13">
<label>13</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname> <given-names>CZ</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>CF</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>QH</given-names>
</name>
<name>
<surname>Hesse-Fong</surname> <given-names>J</given-names>
</name>
<name>
<surname>Lager</surname> <given-names>M</given-names>
</name>
<name>
<surname>Du</surname> <given-names>W</given-names>
</name>
<etal/>
</person-group>. <article-title>Fecal metabolomic dataset of American ginseng-treated DSS mice: Correlation between ginseng enteric inflammation inhibition and its biological signatures</article-title>. <source>Data Brief</source> (<year>2018</year>) <volume>21</volume>:<page-range>1403&#x2013;8</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.dib.2018.10.131</pub-id>
</citation>
</ref>
<ref id="B14">
<label>14</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mehendale</surname> <given-names>SR</given-names>
</name>
<name>
<surname>Aung</surname> <given-names>HH</given-names>
</name>
<name>
<surname>Yin</surname> <given-names>JJ</given-names>
</name>
<name>
<surname>Lin</surname> <given-names>E</given-names>
</name>
<name>
<surname>Fishbein</surname> <given-names>A</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>CZ</given-names>
</name>
<etal/>
</person-group>. <article-title>Effects of Antioxidant Herbs on Chemotherapy-Induced Nausea and Vomiting in a Rat-Pica Model</article-title>. <source>Am J Chin Med</source> (<year>2004</year>) <volume>32</volume>:<fpage>897</fpage>&#x2013;<lpage>905</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1142/S0192415X04002508</pub-id>
</citation>
</ref>
<ref id="B15">
<label>15</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Emmeneggerand</surname> <given-names>U</given-names>
</name>
</person-group>. <article-title>A Comparative Analysis of Low-Dose Metronomic Cyclophosphamide Reveals Absent or Low-Grade Toxicity on Tissues Highly Sensitive to the Toxic Effects of Maximum Tolerated Dose Regimens</article-title>. <source>Cancer Res</source> (<year>2004</year>) <volume>64</volume>:<fpage>3994</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1158/0008-5472.CAN-04-0580</pub-id>
</citation>
</ref>
<ref id="B16">
<label>16</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Keefe</surname> <given-names>DMK</given-names>
</name>
<name>
<surname>Cummins</surname> <given-names>AG</given-names>
</name>
<name>
<surname>Dale</surname> <given-names>BM</given-names>
</name>
<name>
<surname>Kotasek</surname> <given-names>D</given-names>
</name>
<name>
<surname>Robb</surname> <given-names>TA</given-names>
</name>
<name>
<surname>Sage</surname> <given-names>RE</given-names>
</name>
</person-group>. <article-title>Effect of high-dose chemotherapy on intestinal permeability in humans</article-title>. <source>Clin Sci</source> (<year>1997</year>) <volume>92</volume>:<page-range>385&#x2013;9</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1042/cs0920385</pub-id>
</citation>
</ref>
<ref id="B17">
<label>17</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fraiser</surname> <given-names>LH</given-names>
</name>
<name>
<surname>Kanekal</surname> <given-names>S</given-names>
</name>
<name>
<surname>Kehrer</surname> <given-names>JP</given-names>
</name>
</person-group>. <article-title>Cyclophosphamide toxicity. Characterising and avoiding the problem</article-title>. <source>Drugs</source> (<year>1991</year>) <volume>42</volume>:<page-range>781&#x2013;95</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.2165/00003495-199142050-00005</pub-id>
</citation>
</ref>
<ref id="B18">
<label>18</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chow</surname> <given-names>J</given-names>
</name>
<name>
<surname>Lee</surname> <given-names>SM</given-names>
</name>
<name>
<surname>Shen</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Khosravi</surname> <given-names>A</given-names>
</name>
<name>
<surname>Mazmanian</surname> <given-names>SK</given-names>
</name>
</person-group>. <article-title>Host-bacterial symbiosis in health and disease</article-title>. <source>Adv Immunol</source> (<year>2010</year>) <volume>107</volume>:<page-range>243&#x2013;74</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/b978-0-12-381300-8.00008-3</pub-id>
</citation>
</ref>
<ref id="B19">
<label>19</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shi</surname> <given-names>N</given-names>
</name>
<name>
<surname>Li</surname> <given-names>N</given-names>
</name>
<name>
<surname>Duan</surname> <given-names>X</given-names>
</name>
<name>
<surname>Niu</surname> <given-names>H</given-names>
</name>
</person-group>. <article-title>Interaction between the gut microbiome and mucosal immune system</article-title>. <source>Mil Med Res</source> (<year>2017</year>) <volume>4</volume>:<fpage>14</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s40779-017-0122-9</pub-id>
</citation>
</ref>
<ref id="B20">
<label>20</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Takiishi</surname> <given-names>T</given-names>
</name>
<name>
<surname>Fenero</surname> <given-names>CIM</given-names>
</name>
<name>
<surname>Camara</surname> <given-names>NOS</given-names>
</name>
</person-group>. <article-title>Intestinal barrier and gut microbiota: Shaping our immune responses throughout life</article-title>. <source>Tissue Barriers</source> (<year>2017</year>) <volume>5</volume>:<fpage>e1373208</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1080/21688370.2017.1373208</pub-id>
</citation>
</ref>
<ref id="B21">
<label>21</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Okumura</surname> <given-names>R</given-names>
</name>
<name>
<surname>Takeda</surname> <given-names>K</given-names>
</name>
</person-group>. <article-title>Maintenance of intestinal homeostasis by mucosal barriers</article-title>. <source>Inflamm Regener</source> (<year>2018</year>) <volume>38</volume>:<fpage>5</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s41232-018-0063-z</pub-id>
</citation>
</ref>
<ref id="B22">
<label>22</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liang</surname> <given-names>L</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>G</given-names>
</name>
<name>
<surname>Yu</surname> <given-names>G</given-names>
</name>
<name>
<surname>Song</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Li</surname> <given-names>Q</given-names>
</name>
</person-group>. <article-title>Simultaneous decoloration and purification of crude oligosaccharides from pumpkin (Cucurbita moschata Duch) by macroporous adsorbent resin</article-title>. <source>Food Chem</source> (<year>2019</year>) <volume>277</volume>:<page-range>744&#x2013;52</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.foodchem.2018.10.138</pub-id>
</citation>
</ref>
<ref id="B23">
<label>23</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gargiulo</surname> <given-names>S</given-names>
</name>
<name>
<surname>Greco</surname> <given-names>A</given-names>
</name>
<name>
<surname>Gramanzini</surname> <given-names>M</given-names>
</name>
<name>
<surname>Esposito</surname> <given-names>S</given-names>
</name>
<name>
<surname>Affuso</surname> <given-names>A</given-names>
</name>
<name>
<surname>Brunetti</surname> <given-names>A</given-names>
</name>
<etal/>
</person-group>. <article-title>Mice anesthesia, analgesia, and care, Part I: anesthetic considerations in preclinical research</article-title>. <source>ILAR J</source> (<year>2012</year>) <volume>53</volume>:<page-range>E55&#x2013;69</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/ilar.53.1.55</pub-id>
</citation>
</ref>
<ref id="B24">
<label>24</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Huyan</surname> <given-names>XH</given-names>
</name>
<name>
<surname>Lin</surname> <given-names>YP</given-names>
</name>
<name>
<surname>Gao</surname> <given-names>T</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>RY</given-names>
</name>
<name>
<surname>Fan</surname> <given-names>YM</given-names>
</name>
</person-group>. <article-title>Immunosuppressive effect of cyclophosphamide on white blood cells and lymphocyte subpopulations from peripheral blood of Balb/c mice</article-title>. <source>Int Immunopharmacol</source> (<year>2011</year>) <volume>11</volume>:<page-range>1293&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.intimp.2011.04.011</pub-id>
</citation>
</ref>
<ref id="B25">
<label>25</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Meng</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>J</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>Z</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>G</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>L</given-names>
</name>
<name>
<surname>Huo</surname> <given-names>G</given-names>
</name>
<etal/>
</person-group>. <article-title>Lactobacillus plantarum KLDS1.0318 Ameliorates Impaired Intestinal Immunity and Metabolic Disorders in Cyclophosphamide-Treated Mice</article-title>. <source>Front Microbiol</source> (<year>2019</year>) <volume>10</volume>:<elocation-id>731</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fmicb.2019.00731</pub-id>
</citation>
</ref>
<ref id="B26">
<label>26</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ying</surname> <given-names>M</given-names>
</name>
<name>
<surname>Zheng</surname> <given-names>B</given-names>
</name>
<name>
<surname>Yu</surname> <given-names>Q</given-names>
</name>
<name>
<surname>Hou</surname> <given-names>K</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>H</given-names>
</name>
<name>
<surname>Zhao</surname> <given-names>M</given-names>
</name>
<etal/>
</person-group>. <article-title>Ganoderma atrum polysaccharide ameliorates intestinal mucosal dysfunction associated with autophagy in immunosuppressed mice</article-title>. <source>Food Chem Toxicol</source> (<year>2020</year>) <volume>138</volume>:<elocation-id>111244</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.fct.2020.111244</pub-id>
</citation>
</ref>
<ref id="B27">
<label>27</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>T</given-names>
</name>
<name>
<surname>Si</surname> <given-names>B</given-names>
</name>
<name>
<surname>Du</surname> <given-names>H</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Waqas</surname> <given-names>A</given-names>
</name>
<etal/>
</person-group>. <article-title>Intratracheally instillated diesel PM(2.5) significantly altered the structure and composition of indigenous murine gut microbiota</article-title>. <source>Ecotoxicol Environ Saf</source> (<year>2021</year>) <volume>210</volume>:<elocation-id>111903</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.ecoenv.2021.111903</pub-id>
</citation>
</ref>
<ref id="B28">
<label>28</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Takai</surname> <given-names>K</given-names>
</name>
<name>
<surname>Horikoshi</surname> <given-names>K</given-names>
</name>
</person-group>. <article-title>Rapid Detection and Quantification of Members of the Archaeal Community by Quantitative PCR Using Fluorogenic Probes</article-title>. <source>Appl Environ Microbiol</source> (<year>2000</year>) <volume>66</volume>:<elocation-id>5066</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/AEM.66.11.5066-5072.2000</pub-id>
</citation>
</ref>
<ref id="B29">
<label>29</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname> <given-names>X</given-names>
</name>
<name>
<surname>Lin</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Li</surname> <given-names>X</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>X</given-names>
</name>
<name>
<surname>Zhao</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>L</given-names>
</name>
<etal/>
</person-group>. <article-title>Tyrosine supplement ameliorates murine aGVHD by modulation of gut microbiome and metabolome</article-title>. <source>EBioMedicine</source> (<year>2020</year>) <volume>61</volume>:<elocation-id>103048</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.ebiom.2020.103048</pub-id>
</citation>
</ref>
<ref id="B30">
<label>30</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Want</surname> <given-names>EJ</given-names>
</name>
<name>
<surname>Wilson</surname> <given-names>ID</given-names>
</name>
<name>
<surname>Gika</surname> <given-names>H</given-names>
</name>
<name>
<surname>Theodoridis</surname> <given-names>G</given-names>
</name>
<name>
<surname>Plumb</surname> <given-names>RS</given-names>
</name>
<name>
<surname>Shockcor</surname> <given-names>J</given-names>
</name>
<etal/>
</person-group>. <article-title>Global metabolic profiling procedures for urine using UPLC-MS</article-title>. <source>Nat Protoc</source> (<year>2010</year>) <volume>5</volume>:<page-range>1005&#x2013;18</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nprot.2010.50</pub-id>
</citation>
</ref>
<ref id="B31">
<label>31</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yuan</surname> <given-names>M</given-names>
</name>
<name>
<surname>Breitkopf</surname> <given-names>SB</given-names>
</name>
<name>
<surname>Yang</surname> <given-names>X</given-names>
</name>
<name>
<surname>Asara</surname> <given-names>JM</given-names>
</name>
</person-group>. <article-title>A positive/negative ion-switching, targeted mass spectrometry-based metabolomics platform for bodily fluids, cells, and fresh and fixed tissue</article-title>. <source>Nat Protoc</source> (<year>2012</year>) <volume>7</volume>:<page-range>872&#x2013;81</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nprot.2012.024</pub-id>
</citation>
</ref>
<ref id="B32">
<label>32</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Dale</surname> <given-names>DC</given-names>
</name>
<name>
<surname>Fauci</surname> <given-names>AS</given-names>
</name>
<name>
<surname>Wolff</surname> <given-names>SM</given-names>
</name>
</person-group>. <article-title>The effect of cyclophosphamide on leukocyte kinetics and susceptibility to infection in patients with Wegener&#x2019;s granulomatosis</article-title>. <source>Arthritis Rheumatol</source> (<year>2010</year>) <volume>16</volume>:<page-range>657&#x2013;64</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1002/art.1780160510</pub-id>
</citation>
</ref>
<ref id="B33">
<label>33</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Owari</surname> <given-names>M</given-names>
</name>
<name>
<surname>Wasa</surname> <given-names>M</given-names>
</name>
<name>
<surname>Oue</surname> <given-names>T</given-names>
</name>
<name>
<surname>Nose</surname> <given-names>S</given-names>
</name>
<name>
<surname>Fukuzawa</surname> <given-names>M</given-names>
</name>
</person-group>. <article-title>Glutamine prevents intestinal mucosal injury induced by cyclophosphamide in rats</article-title>. <source>Pediatr Surg Int</source> (<year>2012</year>) <volume>28</volume>:<fpage>299</fpage>&#x2013;<lpage>303</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s00383-011-3023-0</pub-id>
</citation>
</ref>
<ref id="B34">
<label>34</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Keefeand</surname> <given-names>DMK</given-names>
</name>
</person-group>. <article-title>Chemotherapy for cancer causes apoptosis that precedes hypoplasia in crypts of the small intestine in humans</article-title>. <source>Gut</source> (<year>2000</year>) <volume>47</volume>:<page-range>632&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1136/gut.47.5.632</pub-id>
</citation>
</ref>
<ref id="B35">
<label>35</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cockburn</surname> <given-names>DW</given-names>
</name>
<name>
<surname>Koropatkin</surname> <given-names>NM</given-names>
</name>
</person-group>. <article-title>Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease</article-title>. <source>J Mol Biol</source> (<year>2016</year>) <volume>428</volume>:<page-range>3230&#x2013;52</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jmb.2016.06.021</pub-id>
</citation>
</ref>
<ref id="B36">
<label>36</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Michaudel</surname> <given-names>C</given-names>
</name>
<name>
<surname>Sokol</surname> <given-names>H</given-names>
</name>
</person-group>. <article-title>The Gut Microbiota at the Service of Immunometabolism</article-title>. <source>Cell Metab</source> (<year>2020</year>) <volume>32</volume>:<page-range>514&#x2013;23</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.cmet.2020.09.004</pub-id>
</citation>
</ref>
<ref id="B37">
<label>37</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Liu</surname> <given-names>T</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>L</given-names>
</name>
<name>
<surname>Pang</surname> <given-names>X</given-names>
</name>
<name>
<surname>Zhao</surname> <given-names>L</given-names>
</name>
<name>
<surname>Yuan</surname> <given-names>H</given-names>
</name>
<etal/>
</person-group>. <article-title>A More Robust Gut Microbiota in Calorie-Restricted Mice Is Associated with Attenuated Intestinal Injury Caused by the Chemotherapy Drug Cyclophosphamide</article-title>. <source>mBio</source> (<year>2019</year>) <volume>10</volume>:<elocation-id>e02903-18</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/mBio.02903-18</pub-id>
</citation>
</ref>
<ref id="B38">
<label>38</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yang</surname> <given-names>J</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>KX</given-names>
</name>
<name>
<surname>Qu</surname> <given-names>JM</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>XD</given-names>
</name>
</person-group>. <article-title>The changes induced by cyclophosphamide in intestinal barrier and microflora in mice</article-title>. <source>Eur J Pharmacol</source> (<year>2013</year>) <volume>714</volume>:<page-range>120&#x2013;4</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.ejphar.2013.06.006</pub-id>
</citation>
</ref>
<ref id="B39">
<label>39</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Akhter</surname> <given-names>KF</given-names>
</name>
<name>
<surname>Mumin</surname> <given-names>MA</given-names>
</name>
<name>
<surname>Lui</surname> <given-names>E</given-names>
</name>
<name>
<surname>Charpentier</surname> <given-names>PA</given-names>
</name>
</person-group>. <article-title>Microfluidic Synthesis of Ginseng Polysaccharide Nanoparticles for Immunostimulating Action on Macrophage Cell Lines</article-title>. <source>ACS Biomater Sci Eng</source> (<year>2016</year>) <volume>2</volume>:<fpage>96</fpage>&#x2013;<lpage>103</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1021/acsbiomaterials.5b00413</pub-id>
</citation>
</ref>
<ref id="B40">
<label>40</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ghosh</surname> <given-names>R</given-names>
</name>
<name>
<surname>Smith</surname> <given-names>SA</given-names>
</name>
<name>
<surname>Nwangwa</surname> <given-names>EE</given-names>
</name>
<name>
<surname>Arivett</surname> <given-names>BA</given-names>
</name>
<name>
<surname>Bryant</surname> <given-names>DL</given-names>
</name>
<name>
<surname>Fuller</surname> <given-names>ML</given-names>
</name>
<etal/>
</person-group>. <article-title>Panax quinquefolius (North American ginseng) cell suspension culture as a source of bioactive polysaccharides: Immunostimulatory activity and characterization of a neutral polysaccharide AGC1</article-title>. <source>Int J Biol Macromol</source> (<year>2019</year>) <volume>139</volume>:<page-range>221&#x2013;32</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.ijbiomac.2019.07.215</pub-id>
</citation>
</ref>
<ref id="B41">
<label>41</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pabst</surname> <given-names>R</given-names>
</name>
<name>
<surname>Russell</surname> <given-names>MW</given-names>
</name>
<name>
<surname>Brandtzaeg</surname> <given-names>P</given-names>
</name>
</person-group>. <article-title>Tissue distribution of lymphocytes and plasma cells and the role of the gut</article-title>. <source>Trends Immunol</source> (<year>2008</year>) <volume>29</volume>:<page-range>206&#x2013;8</page-range>; author reply 209-210. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.it.2008.02.006</pub-id>
</citation>
</ref>
<ref id="B42">
<label>42</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sorini</surname> <given-names>C</given-names>
</name>
<name>
<surname>Cardoso</surname> <given-names>RF</given-names>
</name>
<name>
<surname>Gagliani</surname> <given-names>N</given-names>
</name>
<name>
<surname>Villablanca</surname> <given-names>EJ</given-names>
</name>
</person-group>. <article-title>Commensal Bacteria-Specific CD4(+) T Cell Responses in Health and Disease</article-title>. <source>Front Immunol</source> (<year>2018</year>) <volume>9</volume>:<elocation-id>2667</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fimmu.2018.02667</pub-id>
</citation>
</ref>
<ref id="B43">
<label>43</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Knutson</surname> <given-names>KL</given-names>
</name>
<name>
<surname>Disis</surname> <given-names>ML</given-names>
</name>
</person-group>. <article-title>Tumor antigen-specific T helper cells in cancer immunity and immunotherapy</article-title>. <source>Cancer Immunol Immunother</source> (<year>2005</year>) <volume>54</volume>:<page-range>721&#x2013;8</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1007/s00262-004-0653-2</pub-id>
</citation>
</ref>
<ref id="B44">
<label>44</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lycke</surname> <given-names>NY</given-names>
</name>
<name>
<surname>Bemark</surname> <given-names>M</given-names>
</name>
</person-group>. <article-title>The regulation of gut mucosal IgA B-cell responses: recent developments</article-title>. <source>Mucosal Immunol</source> (<year>2017</year>) <volume>10</volume>:<page-range>1361&#x2013;74</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/mi.2017.62</pub-id>
</citation>
</ref>
<ref id="B45">
<label>45</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cerutti</surname> <given-names>A</given-names>
</name>
<name>
<surname>Chen</surname> <given-names>K</given-names>
</name>
<name>
<surname>Chorny</surname> <given-names>A</given-names>
</name>
</person-group>. <article-title>Immunoglobulin responses at the mucosal interface</article-title>. <source>Annu Rev Immunol</source> (<year>2011</year>) <volume>29</volume>:<page-range>273&#x2013;93</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1146/annurev-immunol-031210-101317</pub-id>
</citation>
</ref>
<ref id="B46">
<label>46</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Knoop</surname> <given-names>KA</given-names>
</name>
<name>
<surname>Newberry</surname> <given-names>RD</given-names>
</name>
</person-group>. <article-title>Goblet cells: multifaceted players in immunity at mucosal surfaces</article-title>. <source>Mucosal Immunol</source> (<year>2018</year>) <volume>11</volume>:<page-range>1551&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41385-018-0039-y</pub-id>
</citation>
</ref>
<ref id="B47">
<label>47</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lee</surname> <given-names>B</given-names>
</name>
<name>
<surname>Moon</surname> <given-names>KM</given-names>
</name>
</person-group>. <article-title>Tight Junction in the Intestinal Epithelium: Its Association with Diseases and Regulation by Phytochemicals</article-title>. <source>J Immunol Res</source> (<year>2018</year>) <volume>2018</volume>:<fpage>2645465</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1155/2018/2645465</pub-id>
</citation>
</ref>
<ref id="B48">
<label>48</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Xin</surname> <given-names>C</given-names>
</name>
<name>
<surname>Quan</surname> <given-names>H</given-names>
</name>
<name>
<surname>Kim</surname> <given-names>J-M</given-names>
</name>
<name>
<surname>Hur</surname> <given-names>Y-H</given-names>
</name>
<name>
<surname>Shin</surname> <given-names>J-Y</given-names>
</name>
<name>
<surname>Bae</surname> <given-names>H-B</given-names>
</name>
<etal/>
</person-group>. <article-title>Ginsenoside Rb1 increases macrophage phagocytosis through p38 mitogen-activated protein kinase/Akt pathway</article-title>. <source>J Ginseng Res</source> (<year>2019</year>) <volume>43</volume>:<fpage>394</fpage>&#x2013;<lpage>401</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jgr.2018.05.003</pub-id>
</citation>
</ref>
<ref id="B49">
<label>49</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ratan</surname> <given-names>ZA</given-names>
</name>
<name>
<surname>Youn</surname> <given-names>SH</given-names>
</name>
<name>
<surname>Kwak</surname> <given-names>YS</given-names>
</name>
<name>
<surname>Han</surname> <given-names>CK</given-names>
</name>
<name>
<surname>Haidere</surname> <given-names>MF</given-names>
</name>
<name>
<surname>Kim</surname> <given-names>JK</given-names>
</name>
<etal/>
</person-group>. <article-title>Adaptogenic effects of Panax ginseng on modulation of immune functions</article-title>. <source>J Ginseng Res</source> (<year>2021</year>) <volume>45</volume>:<fpage>32</fpage>&#x2013;<lpage>40</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jgr.2020.09.004</pub-id>
</citation>
</ref>
<ref id="B50">
<label>50</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shin</surname> <given-names>M-S</given-names>
</name>
<name>
<surname>Song</surname> <given-names>JH</given-names>
</name>
<name>
<surname>Choi</surname> <given-names>P</given-names>
</name>
<name>
<surname>Lee</surname> <given-names>JH</given-names>
</name>
<name>
<surname>Kim</surname> <given-names>S-Y</given-names>
</name>
<name>
<surname>Shin</surname> <given-names>K-S</given-names>
</name>
<etal/>
</person-group>. <article-title>Stimulation of Innate Immune Function by Panax ginseng after Heat Processing</article-title>. <source>J Agric Food Chem</source> (<year>2018</year>) <volume>66</volume>:<page-range>4652&#x2013;9</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1021/acs.jafc.8b00152</pub-id>
</citation>
</ref>
<ref id="B51">
<label>51</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ghosh</surname> <given-names>R</given-names>
</name>
<name>
<surname>Bryant</surname> <given-names>DL</given-names>
</name>
</person-group>. <article-title>Panax quinquefolius (North American Ginseng) Polysaccharides as Immunomodulators: Current Research Status and Future Directions</article-title>. <source>Molecules</source> (<year>2020</year>) <volume>25</volume>:<fpage>5854</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/molecules25245854</pub-id>
</citation>
</ref>
<ref id="B52">
<label>52</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname> <given-names>TH</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>L</given-names>
</name>
<name>
<surname>Hou</surname> <given-names>YY</given-names>
</name>
<name>
<surname>Shen</surname> <given-names>SN</given-names>
</name>
<name>
<surname>Wang</surname> <given-names>TT</given-names>
</name>
</person-group>. <article-title>C-type lectin receptor-mediated immune recognition and response of the microbiota in the gut</article-title>. <source>Gastroenterol Rep</source> (<year>2019</year>) <volume>7</volume>:<page-range>312&#x2013;21</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/gastro/goz028</pub-id>
</citation>
</ref>
<ref id="B53">
<label>53</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kamdar</surname> <given-names>K</given-names>
</name>
<name>
<surname>Nguyen</surname> <given-names>V</given-names>
</name>
<name>
<surname>DePaolo</surname> <given-names>RW</given-names>
</name>
</person-group>. <article-title>Toll-like receptor signaling and regulation of intestinal immunity</article-title>. <source>Virulence</source> (<year>2013</year>) <volume>4</volume>:<page-range>207&#x2013;12</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.4161/viru.23354</pub-id>
</citation>
</ref>
<ref id="B54">
<label>54</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Porter</surname> <given-names>NT</given-names>
</name>
<name>
<surname>Martens</surname> <given-names>EC</given-names>
</name>
</person-group>. <article-title>The Critical Roles of Polysaccharides in Gut Microbial Ecology and Physiology</article-title>. <source>Annu Rev Microbiol</source> (<year>2015</year>) <volume>71</volume>:<page-range>349&#x2013;69</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1146/annurev-micro-102215-095316</pub-id>
</citation>
</ref>
<ref id="B55">
<label>55</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Boulang&#xe9;</surname> <given-names>CL</given-names>
</name>
<name>
<surname>Neves</surname> <given-names>AL</given-names>
</name>
<name>
<surname>Chilloux</surname> <given-names>J</given-names>
</name>
<name>
<surname>Nicholson</surname> <given-names>JK</given-names>
</name>
<name>
<surname>Dumas</surname> <given-names>ME</given-names>
</name>
</person-group>. <article-title>Impact of the gut microbiota on inflammation, obesity, and metabolic disease</article-title>. <source>Genome Med</source> (<year>2016</year>) <volume>8</volume>:<fpage>1</fpage>&#x2013;<lpage>12</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s13073-016-0303-2</pub-id>
</citation>
</ref>
<ref id="B56">
<label>56</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cani</surname> <given-names>PD</given-names>
</name>
<name>
<surname>Possemiers</surname> <given-names>S</given-names>
</name>
<name>
<surname>Van de Wiele</surname> <given-names>T</given-names>
</name>
<name>
<surname>Guiot</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Everard</surname> <given-names>A</given-names>
</name>
<name>
<surname>Rottier</surname> <given-names>O</given-names>
</name>
<etal/>
</person-group>. <article-title>Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability</article-title>. <source>Gut</source> (<year>2009</year>) <volume>58</volume>:<page-range>1091&#x2013;103</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1136/gut.2008.165886</pub-id>
</citation>
</ref>
<ref id="B57">
<label>57</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhou</surname> <given-names>SS</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>J</given-names>
</name>
<name>
<surname>Zhu</surname> <given-names>H</given-names>
</name>
<name>
<surname>Wu</surname> <given-names>J</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>JD</given-names>
</name>
<name>
<surname>Yan</surname> <given-names>R</given-names>
</name>
<etal/>
</person-group>. <article-title>Gut microbiota-involved mechanisms in enhancing systemic exposure of ginsenosides by coexisting polysaccharides in ginseng decoction</article-title>. <source>Sci Rep</source> (<year>2016</year>) <volume>6</volume>:<elocation-id>22474</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/srep22474</pub-id>
</citation>
</ref>
<ref id="B58">
<label>58</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Azad</surname> <given-names>MAK</given-names>
</name>
<name>
<surname>Sarker</surname> <given-names>M</given-names>
</name>
<name>
<surname>Wan</surname> <given-names>D</given-names>
</name>
</person-group>. <article-title>Immunomodulatory Effects of Probiotics on Cytokine Profiles</article-title>. <source>BioMed Res Int</source> (<year>2018</year>) <volume>2018</volume>:<fpage>1</fpage>&#x2013;<lpage>10</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1155/2018/8063647</pub-id>
</citation>
</ref>
<ref id="B59">
<label>59</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pickard</surname> <given-names>JM</given-names>
</name>
<name>
<surname>Zeng</surname> <given-names>MY</given-names>
</name>
<name>
<surname>Caruso</surname> <given-names>R</given-names>
</name>
<name>
<surname>N&#xfa;&#xf1;ez</surname> <given-names>G</given-names>
</name>
</person-group>. <article-title>Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease</article-title>. <source>Immunol Rev</source> (<year>2017</year>) <volume>279</volume>:<fpage>70</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/imr.12567</pub-id>
</citation>
</ref>
<ref id="B60">
<label>60</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hardy</surname> <given-names>H</given-names>
</name>
<name>
<surname>Harris</surname> <given-names>J</given-names>
</name>
<name>
<surname>Lyon</surname> <given-names>E</given-names>
</name>
<name>
<surname>Beal</surname> <given-names>J</given-names>
</name>
<name>
<surname>Foey</surname> <given-names>AD</given-names>
</name>
</person-group>. <article-title>Probiotics, prebiotics and immunomodulation of gut mucosal defences: homeostasis and immunopathology</article-title>. <source>Nutrients</source> (<year>2013</year>) <volume>5</volume>:<page-range>1869&#x2013;912</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/nu5061869</pub-id>
</citation>
</ref>
<ref id="B61">
<label>61</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ju</surname> <given-names>T</given-names>
</name>
<name>
<surname>Kong</surname> <given-names>JY</given-names>
</name>
<name>
<surname>Stothard</surname> <given-names>P</given-names>
</name>
<name>
<surname>Willing</surname> <given-names>BP</given-names>
</name>
</person-group>. <article-title>Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota</article-title>. <source>Isme J</source> (<year>2019</year>) <volume>13</volume>:<page-range>1520&#x2013;34</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41396-019-0364-5</pub-id>
</citation>
</ref>
<ref id="B62">
<label>62</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Reeves</surname> <given-names>AE</given-names>
</name>
<name>
<surname>Koenigsknecht</surname> <given-names>MJ</given-names>
</name>
<name>
<surname>Bergin</surname> <given-names>IL</given-names>
</name>
<name>
<surname>Young</surname> <given-names>VB</given-names>
</name>
</person-group>. <article-title>Suppression of Clostridium difficile in the Gastrointestinal Tracts of Germfree Mice Inoculated with a Murine Isolate from the Family Lachnospiraceae</article-title>. <source>Infect Immun</source> (<year>2012</year>) <volume>80</volume>:<fpage>3786</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/IAI.00647-12</pub-id>
</citation>
</ref>
<ref id="B63">
<label>63</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>G&#xe9;rard</surname> <given-names>P</given-names>
</name>
</person-group>. <article-title>Metabolism of cholesterol and bile acids by the gut microbiota</article-title>. <source>Pathogens (Basel Switzerland)</source> (<year>2013</year>) <volume>3</volume>:<fpage>14</fpage>&#x2013;<lpage>24</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/pathogens3010014</pub-id>
</citation>
</ref>
<ref id="B64">
<label>64</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Furusawa</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Obata</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Fukuda</surname> <given-names>S</given-names>
</name>
<name>
<surname>Endo</surname> <given-names>TA</given-names>
</name>
<name>
<surname>Nakato</surname> <given-names>G</given-names>
</name>
<name>
<surname>Takahashi</surname> <given-names>D</given-names>
</name>
<etal/>
</person-group>. <article-title>Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells</article-title>. <source>Nature</source> (<year>2013</year>) <volume>504</volume>:<page-range>446&#x2013;50</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nature12721</pub-id>
</citation>
</ref>
<ref id="B65">
<label>65</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Atarashi</surname> <given-names>K</given-names>
</name>
<name>
<surname>Tanoue</surname> <given-names>T</given-names>
</name>
<name>
<surname>Oshima</surname> <given-names>K</given-names>
</name>
<name>
<surname>Suda</surname> <given-names>W</given-names>
</name>
<name>
<surname>Nagano</surname> <given-names>Y</given-names>
</name>
<name>
<surname>Nishikawa</surname> <given-names>H</given-names>
</name>
<etal/>
</person-group>. <article-title>Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota</article-title>. <source>Nature</source> (<year>2013</year>) <volume>500</volume>:<page-range>232&#x2013;6</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/nature12331</pub-id>
</citation>
</ref>
<ref id="B66">
<label>66</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hofstad</surname> <given-names>T</given-names>
</name>
<name>
<surname>Olsen</surname> <given-names>I</given-names>
</name>
<name>
<surname>Eribe</surname> <given-names>ER</given-names>
</name>
<name>
<surname>Falsen</surname> <given-names>E</given-names>
</name>
<name>
<surname>Collins</surname> <given-names>MD</given-names>
</name>
<name>
<surname>Lawson</surname> <given-names>PA</given-names>
</name>
</person-group>. <article-title>Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3)</article-title>. <source>Int J Syst Evol Microbiol</source> (<year>2000</year>) <volume>50</volume>:<page-range>2189&#x2013;95</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1099/00207713-50-6-2189</pub-id>
</citation>
</ref>
<ref id="B67">
<label>67</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hechler</surname> <given-names>C</given-names>
</name>
<name>
<surname>Borewicz</surname> <given-names>K</given-names>
</name>
<name>
<surname>Beijers</surname> <given-names>R</given-names>
</name>
<name>
<surname>Saccenti</surname> <given-names>E</given-names>
</name>
</person-group>. <article-title>Association between Psychosocial Stress and Fecal Microbiota in Pregnant Women</article-title>. <source>New Microbes New Infect</source> (<year>2019</year>) <volume>9</volume>:<fpage>4463</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41598-019-40434-8</pub-id>
</citation>
</ref>
<ref id="B68">
<label>68</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hechler</surname> <given-names>C</given-names>
</name>
<name>
<surname>Borewicz</surname> <given-names>K</given-names>
</name>
<name>
<surname>Beijers</surname> <given-names>R</given-names>
</name>
<name>
<surname>Saccenti</surname> <given-names>E</given-names>
</name>
<name>
<surname>Riksen-Walraven</surname> <given-names>M</given-names>
</name>
<name>
<surname>Smidt</surname> <given-names>H</given-names>
</name>
<etal/>
</person-group>. <article-title>Association between Psychosocial Stress and Fecal Microbiota in Pregnant Women</article-title>. <source>Sci Rep</source> (<year>2019</year>) <volume>9</volume>:<fpage>4463</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1038/s41598-019-40434-8</pub-id>
</citation>
</ref>
<ref id="B69">
<label>69</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pacher</surname> <given-names>P</given-names>
</name>
<name>
<surname>Nivorozhkin</surname> <given-names>A</given-names>
</name>
<name>
<surname>Szab&#xf3;</surname> <given-names>C</given-names>
</name>
</person-group>. <article-title>Therapeutic effects of xanthine oxidase inhibitors: renaissance half a century after the discovery of allopurinol</article-title>. <source>Pharmacol Rev</source> (<year>2006</year>) <volume>58</volume>:<fpage>87</fpage>&#x2013;<lpage>114</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1124/pr.58.1.6</pub-id>
</citation>
</ref>
<ref id="B70">
<label>70</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wu</surname> <given-names>J</given-names>
</name>
<name>
<surname>Wei</surname> <given-names>Z</given-names>
</name>
<name>
<surname>Cheng</surname> <given-names>P</given-names>
</name>
<name>
<surname>Qian</surname> <given-names>C</given-names>
</name>
<name>
<surname>Lu</surname> <given-names>Y</given-names>
</name>
</person-group>. <article-title>Rhein modulates host purine metabolism in intestine through gut microbiota and ameliorates experimental colitis</article-title>. <source>Theranostics</source> (<year>2020</year>) <volume>10</volume>:<page-range>10665&#x2013;79</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.7150/thno.43528</pub-id>
</citation>
</ref>
<ref id="B71">
<label>71</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Badawy</surname> <given-names>AA</given-names>
</name>
</person-group>. <article-title>Tryptophan Metabolism: A Versatile Area Providing Multiple Targets for Pharmacological Intervention</article-title>. <source>Egypt J Basic Clin Pharmacol</source> (<year>2019</year>) <volume>9</volume>:<fpage>10</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.32527/2019/101415</pub-id>
</citation>
</ref>
<ref id="B72">
<label>72</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gao</surname> <given-names>J</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>K</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>H</given-names>
</name>
<name>
<surname>Liu</surname> <given-names>G</given-names>
</name>
<name>
<surname>Bai</surname> <given-names>M</given-names>
</name>
<name>
<surname>Peng</surname> <given-names>C</given-names>
</name>
<etal/>
</person-group>. <article-title>Impact of the Gut Microbiota on Intestinal Immunity Mediated by Tryptophan Metabolism</article-title>. <source>Front Cell Infect Microbiol</source> (<year>2018</year>) <volume>8</volume>:<elocation-id>13</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3389/fcimb.2018.00013</pub-id>
</citation>
</ref>
<ref id="B73">
<label>73</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Medina-Gomez</surname> <given-names>G</given-names>
</name>
<name>
<surname>Gray</surname> <given-names>S</given-names>
</name>
<name>
<surname>Vidal-Puig</surname> <given-names>A</given-names>
</name>
</person-group>. <article-title>Adipogenesis and lipotoxicity: role of peroxisome proliferator-activated receptor gamma (PPARgamma) and PPARgammacoactivator-1 (PGC1)</article-title>. <source>Public Health Nutr</source> (<year>2007</year>) <volume>10</volume>:<page-range>1132&#x2013;7</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1017/s1368980007000614</pub-id>
</citation>
</ref>
<ref id="B74">
<label>74</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhang</surname> <given-names>X</given-names>
</name>
<name>
<surname>Young</surname> <given-names>HA</given-names>
</name>
</person-group>. <article-title>PPAR and immune system&#x2014;what do we know</article-title>? <source>Int Immunopharmacol</source> (<year>2002</year>) <volume>2</volume>:<page-range>1029&#x2013;44</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/S1567-5769(02)00057-7</pub-id>
</citation>
</ref>
<ref id="B75">
<label>75</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yum</surname> <given-names>HW</given-names>
</name>
<name>
<surname>Na</surname> <given-names>HK</given-names>
</name>
<name>
<surname>Surh</surname> <given-names>YJ</given-names>
</name>
</person-group>. <article-title>Anti-inflammatory effects of docosahexaenoic acid: Implications for its cancer chemopreventive potential</article-title>. <source>Semin Cancer Biol</source> (<year>2016</year>) <volume>40&#x2013;41</volume>:<page-range>141&#x2013;59</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.semcancer.2016.08.004</pub-id>
</citation>
</ref>
<ref id="B76">
<label>76</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gabbs</surname> <given-names>M</given-names>
</name>
<name>
<surname>Leng</surname> <given-names>S</given-names>
</name>
<name>
<surname>Devassy</surname> <given-names>JG</given-names>
</name>
<name>
<surname>Monirujjaman</surname> <given-names>M</given-names>
</name>
<name>
<surname>Aukema</surname> <given-names>HM</given-names>
</name>
</person-group>. <article-title>Advances in Our Understanding of Oxylipins Derived from Dietary PUFAs</article-title>. <source>Adv Nutr</source> (<year>2015</year>) <volume>513</volume>:<page-range>513&#x2013;40</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.3945/an.114.007732</pub-id>
</citation>
</ref>
<ref id="B77">
<label>77</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Angelini</surname> <given-names>R</given-names>
</name>
<name>
<surname>Vortmeier</surname> <given-names>G</given-names>
</name>
<name>
<surname>Corcelli</surname> <given-names>A</given-names>
</name>
<name>
<surname>Fuchs</surname> <given-names>B</given-names>
</name>
</person-group>. <article-title>A fast method for the determination of the PC/LPC ratio in intact serum by MALDI-TOF MS: An easy-to-follow lipid biomarker of inflammation</article-title>. <source>Chem Phys Lipids</source> (<year>2014</year>) <volume>183</volume>:<page-range>169&#x2013;75</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.chemphyslip.2014.07.001</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>