<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2016.00527</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Systemic Expression of Notch Ligand Delta-Like 4 during Mycobacterial Infection Alters the T Cell Immune Response</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Schaller</surname> <given-names>Matthew A.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="cor1">&#x0002A;</xref>
<uri xlink:href="http://frontiersin.org/people/u/366998"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Allen</surname> <given-names>Ronald M.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://frontiersin.org/people/u/84269"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Kimura</surname> <given-names>Soichiro</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://frontiersin.org/people/u/386270"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Day</surname> <given-names>Cheryl L.</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://frontiersin.org/people/u/117547"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Kunkel</surname> <given-names>Steven L.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Pathology, University of Michigan Medical School</institution>, <addr-line>Ann Arbor, MI</addr-line>, <country>USA</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Microbiology and Infectious Diseases, Toho University School of Medicine</institution>, <addr-line>Tokyo</addr-line>, <country>Japan</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Microbiology and Immunology, Emory University School of Medicine</institution>, <addr-line>Atlanta, GA</addr-line>, <country>USA</country></aff>
<aff id="aff4"><sup>4</sup><institution>Emory Vaccine Center, Emory University School of Medicine</institution>, <addr-line>Atlanta, GA</addr-line>, <country>USA</country></aff>
<aff id="aff5"><sup>5</sup><institution>South African Tuberculosis Vaccine Initiative (SATVI), Institute of Infectious Diseases and Molecular Medicine, School of Child and Adolescent Health, University of Cape Town</institution>, <addr-line>Observatory</addr-line>, <country>South Africa</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Alexandre Morrot, Federal University of Rio de Janeiro, Brazil</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Santos Ma&#x000F1;es, Spanish National Research Council, Spain; Celio Geraldo Freire De Lima, Federal University of Rio de Janeiro, Brazil; Alessandra D&#x02019;Almeida Filardy, Federal University of Rio de Janeiro, Brazil</p></fn>
<corresp content-type="corresp" id="cor1">&#x0002A;Correspondence: Matthew A. Schaller, <email>mschalle&#x00040;umich.edu</email></corresp>
<fn fn-type="other" id="fn002"><p>Specialty section: This article was submitted to Microbial Immunology, a section of the journal Frontiers in Immunology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>11</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection">
<year>2016</year>
</pub-date>
<volume>7</volume>
<elocation-id>527</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>08</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>10</day>
<month>11</month>
<year>2016</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2016 Schaller, Allen, Kimura, Day and Kunkel.</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>Schaller, Allen, Kimura, Day and Kunkel</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>The Notch ligand delta-like 4 (DLL4) is known to fine-tune the CD4<sup>&#x0002B;</sup> T cell cytokine response. DLL4 is expressed on the surface of antigen-presenting cells (APCs) in a MyD88-dependent manner. We found that DLL4 expression was upregulated on bone marrow progenitor cells and APCs in mice infected with BCG <italic>Mycobacterium</italic>. Transfer of DLL4<sup>&#x0002B;</sup> progenitor cells from infected hosts resulted in an increase DLL4<sup>&#x0002B;</sup> myeloid cells in the spleen, indicating that expression of the <italic>dll4</italic> gene is propagated throughout hematopoiesis. We also found an increase in DLL4<sup>&#x0002B;</sup> monocytes from individuals who were infected with <italic>Mycobacterium tuberculosis</italic>. In latent individuals, DLL4 expression correlated with increased cytokine production from T cells in response to PPD stimulation. Finally, antibody blockade of DLL4 reduced T cell cytokine production from na&#x000EF;ve T cells stimulated with antigen. These results demonstrate that the Notch ligand DLL4 can influence T cell cytokine production in both humans and mice, and further reveal that expression of DLL4 is upregulated on early hematopoietic progenitors in response to chronic mycobacterial infection. These data suggest that widespread DLL4 expression may occur as a result of mycobacterial infection, and that this expression may alter CD4<sup>&#x0002B;</sup> T cell responses to both previously encountered and novel antigens.</p>
</abstract>
<kwd-group>
<kwd>Notch</kwd>
<kwd>hematopoiesis</kwd>
<kwd>monocytes</kwd>
<kwd>tuberculosis</kwd>
</kwd-group>
<contract-num rid="cn01">HL112897, HL31237, HL89216</contract-num>
<contract-num rid="cn02">AI083156</contract-num>
<contract-sponsor id="cn01">National Heart, Lung, and Blood Institute<named-content content-type="fundref-id">10.13039/100000050</named-content></contract-sponsor>
<contract-sponsor id="cn02">National Institute of Allergy and Infectious Diseases<named-content content-type="fundref-id">10.13039/100000060</named-content></contract-sponsor>
<contract-sponsor id="cn03">Francis Family Foundation<named-content content-type="fundref-id">10.13039/100005834</named-content></contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="56"/>
<page-count count="11"/>
<word-count count="7593"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="introduction">
<title>Introduction</title>
<p>There is a growing body of evidence that the innate immune response to pathogen exposure can extend beyond the site of infection to alter both the rate of production and the function of newly formed white blood cells. For example, hematopoietic stem cells are known to respond to IFN&#x003B3; with increased cell cycling (<xref ref-type="bibr" rid="B1">1</xref>&#x02013;<xref ref-type="bibr" rid="B3">3</xref>), and bone marrow progenitor cells are known to respond to TLR agonists both <italic>in vitro</italic> and <italic>in vivo</italic> (<xref ref-type="bibr" rid="B4">4</xref>&#x02013;<xref ref-type="bibr" rid="B7">7</xref>). Some of these changes may result in alterations in the innate immune response, a concept known as trained immunity (<xref ref-type="bibr" rid="B8">8</xref>, <xref ref-type="bibr" rid="B9">9</xref>). In one study, trained immunity resulting from vaccination with bacille Calmette&#x02013;Guerin was correlated with decreased morbidity resulting from pathogen exposure, and this vaccination resulted in overall reduced mortality compared to unvaccinated individuals (<xref ref-type="bibr" rid="B10">10</xref>).</p>
<p>Although many of these studies focus on altered differentiation of innate immune cells, there is little evidence that changes that occur at the stem cell level as a result of pathogen exposure can also alter the adaptive immune response. If changes relevant to adaptive immunity did occur in myeloid progenitor cells, these alterations would be most relevant in the adaptive immune response to chronic infection. Chronic infections are the result of immune responses that sub-optimally contain a pathogen at the expense of the host, resulting in tissue damage.</p>
<p><italic>Mycobacterium tuberculosis</italic> (mTB) is responsible for approximately 1.5 million deaths each year and has infected between one-quarter and one-third of the world&#x02019;s population (<xref ref-type="bibr" rid="B11">11</xref>&#x02013;<xref ref-type="bibr" rid="B13">13</xref>), thus classifying this disease as a worldwide epidemic. The immune response to mTB is characterized by the formation of granulomas comprised of necrotic tissue and a milieu of cells that work in concert to contain the bacterium without effectively clearing it. Many researchers have demonstrated the importance of T cell participation in the containment of mTB (<xref ref-type="bibr" rid="B14">14</xref>&#x02013;<xref ref-type="bibr" rid="B17">17</xref>). A recent study further suggests that the CD4<sup>&#x0002B;</sup> T cell:antigen-presenting cell (APC) interaction plays a critical role in pathogen clearance and requires direct contact between the APC and the CD4<sup>&#x0002B;</sup> T cell for an effective immune response (<xref ref-type="bibr" rid="B18">18</xref>). Other works have identified that APC-expressed costimulatory molecules aid in proper T cell activation in response to mycobacterial antigens (<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B20">20</xref>).</p>
<p>In the studies outlined below, we suggest that the Notch system provides an ideal target for long-term regulation of the adaptive immune system by APC in the setting of mTB infection. The Notch system consists of five ligands that signal promiscuously through four receptors to activate target gene transcription (<xref ref-type="bibr" rid="B21">21</xref>). The receptors Notch 1 and Notch 2 are expressed at every stage of the T cell lifecycle, and Notch signaling has demonstrated importance in thymic maturation (<xref ref-type="bibr" rid="B22">22</xref>, <xref ref-type="bibr" rid="B23">23</xref>), effector function (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B25">25</xref>), and the formation and maintenance of immunological memory (<xref ref-type="bibr" rid="B26">26</xref>). The Notch ligand delta-like 4 (DLL4), which aids in T cell differentiation, is specifically upregulated on APCs only as a result of TLR signaling <italic>via</italic> a MyD88 pathway (<xref ref-type="bibr" rid="B27">27</xref>). Several studies have demonstrated the importance of DLL4 in the T cell response in multiple diseases including respiratory syncytial virus (<xref ref-type="bibr" rid="B28">28</xref>), experimental autoimmune encephalomyelitis (<xref ref-type="bibr" rid="B29">29</xref>), type 1 diabetes (<xref ref-type="bibr" rid="B30">30</xref>), and the mycobacterial-elicited pulmonary immune response (<xref ref-type="bibr" rid="B31">31</xref>). DLL4 expression by APCs during viral infection reduced IL-4 and IL-13 production and increased production of IFN&#x003B3; (<xref ref-type="bibr" rid="B28">28</xref>). In the mycobacterial- and EAE-driven responses, DLL4 increased IL-17 production from CD4<sup>&#x0002B;</sup> T cells (<xref ref-type="bibr" rid="B29">29</xref>, <xref ref-type="bibr" rid="B31">31</xref>, <xref ref-type="bibr" rid="B32">32</xref>). In type 1 diabetes, blockade of DLL4 decreased T cell activation and increased T regulatory cell differentiation (<xref ref-type="bibr" rid="B30">30</xref>). These data suggest that the DLL4 ligand can alter the T cell-driven immune response in a context-specific manner.</p>
<p>Here, we outline a pathway whereby DLL4, which is upregulated in the lung during BCG mycobacteria infection in mice, is also increased systemically on the cell surface of APC as a result of exposure to this pathogen. Increased DLL4 protein can be observed on early progenitor cells in the bone marrow and on APCs in the spleen. We also demonstrate that DLL4 expression is maintained during short-term hematopoiesis in the absence of pathogenic stimuli using bone marrow chimeras. Finally, we demonstrate that DLL4 is upregulated on peripheral blood monocytes in a cohort of patients with latent or active TB infection and demonstrate that the presence of DLL4 on monocytes correlates with the T cell immune response in those patients that are latent tuberculosis infection (LTBI).</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2-1">
<title>Mycobacterial Culture</title>
<p>BCG <italic>Mycobacterium</italic> (TICE strain) was obtained from Merck. Initial CFU was approximated by weight and cultures started in 3.5&#x02009;mL 7H9 media supplemented with OADC (BD Biosciences). Tubes were kept in a 37&#x000B0;C incubator and agitated daily for 17&#x02009;days. Cultures were spun at 3000&#x02009;&#x000D7;&#x02009;<italic>g</italic> for 10&#x02009;min and the supernatants removed. Pellets were resuspended in 3&#x02009;mL of PBS with 0.5% Tween 80. Frozen stocks were prepared by mixing 20% of the BCG culture with 20% glycerol, 10% OADC, and 50% 7H9 media. Cultures were stored at &#x02212;80&#x000B0;C. CFU was determined by serial dilutions (100&#x02013;1,000,000&#x000D7;) of frozen stocks and plating on 7H11 media supplemented with 10% OADC.</p>
<p>To determine lung CFU, whole lungs were homogenized in 1&#x02009;mL of PBS and serial dilutions from 10 to 10,000&#x000D7; plated on 7H11 agar supplemented with 10% OADC. Plates were incubated at 37&#x000B0;C for 16&#x02009;days.</p>
<sec id="S2-1-1">
<title>Mice</title>
<p>We used female C57BL/6 mice purchased from Taconic that were 6&#x02013;8&#x02009;weeks old at the beginning of the experiment. Mice were infected with 1.0&#x02009;&#x000D7;&#x02009;10<sup>5</sup>&#x02013;5.0&#x02009;&#x000D7;&#x02009;10<sup>5</sup> live <italic>Mycobacterium</italic> (BCG strain) by non-surgical intratracheal instillation.</p>
</sec>
<sec id="S2-1-2">
<title>Histology</title>
<p>Lungs were dissected and inflated with 10% normal buffered formalin and fixed in the same buffer overnight. Samples were then stored in 70% ethanol until processed. Histological analysis was performed on two serial 6-&#x003BC;m sections hematoxylin and eosin stained sections from each mouse.</p>
</sec>
<sec id="S2-1-3">
<title>RNA Extraction</title>
<p>RNA was extracted from 1.0&#x02009;&#x000D7;&#x02009;10<sup>7</sup> splenic cells using TRIzol (Thermo Fisher Scientific) and 500&#x02009;ng total RNA reverse transcribed using iScript (Bio-Rad, Hercules, CA, USA). QPCR was run on a Taqman 7500 analyzer using SYBR Green master mix and specific primers for murine <italic>dll4</italic> (Forward: AGGTGCCACTTCGGTTACACAG, Reverse: CAATCACACACTCGTTCCTCTCTTC). <italic>Gapdh</italic> was used as a control gene.</p>
</sec>
</sec>
<sec id="S2-2">
<title>Flow Cytometry</title>
<sec id="S2-2-1">
<title>Murine</title>
<p>Flow cytometry was done on an LSR II with 488, 633, and 405&#x02009;nM lasers. All mouse antibodies were purchased from BioLegend and used at a 1:200 dilution to stain between 1.0&#x02009;&#x000D7;&#x02009;10<sup>4</sup> and 1.0&#x02009;&#x000D7;&#x02009;10<sup>7</sup> cells in 200&#x02009;&#x003BC;L of FACS buffer (containing 1% FCS and 0.002&#x02009;M EDTA). In order to analyze only viable cells in the lung, the LIVE/DEAD Fixable Violet Dead Cell Stain Kit (Life Technologies) was used according to manufacturer&#x02019;s instructions. All lung samples were analyzed by first gating on viable cells and subsequently determining populations of interest. For lung flow cytometry, minced lungs were digested in 5&#x02009;mL of a 1&#x02009;mg/mL solution of Collagenase A (Roche) and 10&#x02009;Kunitz units of DNAseI (Sigma-Aldrich) in complete medium for 45&#x02009;min at 37&#x000B0;C in a shaking incubator. Samples were subsequently passed 15&#x000D7; through a 5-mL syringe with an 18&#x02009;G needle, and filtered through 100&#x02009;&#x003BC;M Nitex (Wild Life Supply Co., Yulee, FL, USA) to remove debris. The lung homogenate was centrifuged at 400&#x02009;&#x000D7;&#x02009;<italic>g</italic> for 5&#x02009;min, and the resulting cell pellet was resuspended in 2&#x02009;mL of FACS buffer. 200&#x02009;&#x003BC;L of this suspension was used for flow cytometry staining in a 96-well plate. Spleen flow cytometry was performed by mincing the spleen and pressing through a 40&#x02009;&#x003BC;M cell filter (BD) with the plunger from a 3-mL syringe and rinsing with FACS buffer. Spleen cells were centrifuged at 400&#x02009;&#x000D7;&#x02009;<italic>g</italic> for 5&#x02009;min and the resulting cell pellet resuspended in 3&#x02009;mL of FACS buffer. For flow cytometry using bone marrow cells, one femur and one tibia were flushed with flow buffer using a 27-G needle, and cells were pressed through a cell filter, as described above. Cells were centrifuged and resuspended in 1&#x02009;mL of FACS buffer and 200&#x02009;&#x003BC;L was used for staining. To stain mouse cells, 1&#x02009;&#x003BC;L of FC block and all specific antibodies were added simultaneously and incubated for 10&#x02009;min at room temperature on an orbital shaker. Plates were centrifuged at 400&#x02009;&#x000D7;&#x02009;<italic>g</italic> for 5&#x02009;min, the supernatant aspirated, and an additional 200&#x02009;&#x003BC;L of FACS buffer added to wash the cells. After this wash step, the supernatant was aspirated and cells resuspended in 200&#x02009;&#x003BC;L of formalin using a multichannel pipette. Cells were incubated for 10&#x02009;min on an orbital shaker and then washed 2&#x000D7; in PBS, as described above. To determine cell counts, 10&#x02009;&#x003BC;L of CountBright counting beads (Life Technologies) were added prior to running the samples on a flow cytometer. Cell counts were determined per manufacturer instructions.</p>
<p>For bone marrow chimera experiments, femurs, tibias, humerus, sacrum, lumbar, and thoracic vertebrae were dissected from each mouse and crushed using an autoclaved mortar and pestle in the presence of FACS buffer. Crushed bones were rinsed several times and subjected to additional crushing until no red matter was visible in the pestle. Cells were centrifuged as described and red blood cells lysed using AKC lysis buffer. The pellet was washed 3&#x000D7; with FACS buffer, resuspended in the remaining volume and then a biotinylated lineage depletion cocktail (FC block, anti-CD3, anti-CD19, anti-Nk1.1, anti-Ter119, and anti-GR1) was added, using 2&#x02009;&#x003BC;L of each antibody per mouse. Cells were incubated for 10&#x02009;min at 4&#x000B0;C and then anti-biotin beads (50&#x02009;&#x003BC;L per mouse) (Miltenyi) were added. Cells were incubated for an additional 15&#x02009;min at 4&#x000B0;C and then washed with 20&#x02009;mL of FACS buffer. Cells were then passed through a CS column (Miltenyi) per manufacturer instructions (cells from three mice were pooled for one CS column). Flow through was centrifuged, the supernatant aspirated, and cells resuspended in the remaining volume of about 300&#x02009;&#x003BC;L, and then stained with antibodies against c-kit APC, sca-1 Pe-Cy7, and also streptavidin FITC. LSK cells were sorted on a FACS Aria II with 488, 633, and 405&#x02009;nM lasers.</p>
</sec>
<sec id="S2-2-2">
<title>Human</title>
<p>Participants for these studies were recruited from the Cape Town Area in South Africa and were all &#x0003E;18&#x02009;years of age and sero-negative for HIV (<xref ref-type="bibr" rid="B33">33</xref>). LTBI was defined as a T cell cytokine response to ESAT-6 and/or CFP-10 with no previous history of TB disease or treatment. Diagnosis of active disease was based on symptoms, patient history, and sputum microscopy and/or culture. All patients with active disease were positive either by sputum-smear microscopy and/or <italic>M. tuberculosis</italic> growth in liquid culture of sputum. Cryopreserved PBMCs were thawed in a 37&#x000B0;C water bath and immediately added to 20&#x02009;mL of warm RPMI. Cells were spun at 400&#x02009;&#x000D7;&#x02009;<italic>g</italic> and resuspended in 1&#x02009;mL of FACS buffer for human cells (PBS &#x0002B; 1% human serum albumin). About 200&#x02009;&#x003BC;L of cells were used for analysis. Cells were stained with 1&#x02009;&#x003BC;L CD14 Alexa700 (clone M5E2), 1&#x02009;&#x003BC;L Dll4 PE (clone MHD4-46), 1&#x02009;&#x003BC;L CD11b Pacific Blue (clone ICRF44), and 1&#x02009;&#x003BC;L of a 1-mg/mL solution of Human IgG to block FC receptors. Cells were stained for 20&#x02009;min at room temperature and the same procedure followed, as described above.</p>
</sec>
<sec id="S2-2-3">
<title>Bone Marrow Chimeras</title>
<p>Six-week-old C57Bl/6 mice were irradiated twice with 500&#x02009;G 3&#x02009;h apart on a rotating platform in a cesium irradiator. Cells were injected intravenously in 100&#x02009;&#x003BC;L RPMI 3&#x02009;h after the second irradiation.</p>
</sec>
</sec>
<sec id="S2-3">
<title>Cell Culture</title>
<p>Na&#x000EF;ve T cells were isolated from OT-II transgenic mice (The Jackson Laboratory, Bar Harbor, ME, USA) using Na&#x000EF;ve Cell Isolation Kit II from Miltenyi. APCs from BCG infected and na&#x000EF;ve mice were obtained by making a single-cell suspension from the pooled spleens of three mice. Red blood cells were lysed using AKC buffer, and cells were washed 2&#x000D7; in FACS buffer. Cells were then resuspended in 500&#x02009;&#x003BC;L FACS buffer and incubated with 50&#x02009;&#x003BC;L of an antibody cocktail containing equal proportions of anti-CD16/32 and biotinylated antibodies to CD3, B220, and Ter119 (all antibodies from Biolegend). Cells were then washed, incubated with magnetic beads, and run through a CS column, as described above, for bone marrow chimera FACS. The flow through from the column was centrifuged, resuspended in 300&#x02009;&#x003BC;L FACS buffer, and stained with antibodies to CD11c and CD11b. Cells were then washed, resuspended in 500&#x02009;&#x003BC;L FACS buffer, and CD11c<sup>&#x0002B;</sup>CD11b<sup>&#x0002B;</sup> cells sorted by FACS using a FACS Aria II cell sorter. OT-II T cells were cultured at 1.0&#x02009;&#x000D7;&#x02009;10<sup>5</sup>/100&#x02009;&#x003BC;L in a 96-well flat bottom plate with 1.0&#x02009;&#x000D7;&#x02009;10<sup>4</sup> FACS sorted DCs in complete RPMI [10% FCS (Atlas Biologicals, Fort Collins, CO, USA) 1% non-essential amino acids, 1% sodium pyruvate, 1% HEPES, 1% penicillin/streptomycin, and 1% <sc>l</sc>-glutamine] (media and all supplements from Lonza, Walkersville, MD, USA) for 72&#x02009;h. Cell culture supernatants were harvested and analyzed using Bio-plex 200 instrument and reagents (Bio-Rad). Anti-Dll4 antibody and control Ig for cell culture were purified from the serum of immunized rabbits using a protein A column (Bio-Rad). This antibody has previously been verified to be specific for the Notch ligand DLL4 (<xref ref-type="bibr" rid="B28">28</xref>).</p>
</sec>
<sec id="S2-4">
<title>Statistical Analysis</title>
<p>Analysis was performed using Prism (all figures) or SPSS (all tables). In cases where ANOVA analysis indicated that one of the independent variables was a significant factor (see Figure <xref ref-type="fig" rid="F1">1</xref>), the cutoff for significance was adjusted to <italic>p</italic>&#x02009;&#x0003C;&#x02009;0.001. Principle component analysis (PCA) was done using percent of DLL4<sup>&#x0002B;</sup> monocytes and cytokine production (IL-2, IFN&#x003B3;, or TNF&#x003B1;) from CD4<sup>&#x0002B;</sup> T cells in response to specific antigens (Ag85A, CFP10, ESAT6, PPD, TB10.4, or <italic>Staphylococcus</italic> Enterotoxin B) from the same donor as individual variables (total of 19 variables per donor). After dimension reduction using direct oblimin rotation with Kaiser normalization, two components with an Eigenvalue &#x02265;4 were identified in the cohort of latently infected individuals (Table <xref ref-type="table" rid="T1">1</xref>). Component normalization indicated these components were not related (Table S3 in Supplementary Material).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>Increase in number of cells expressing delta-like 4 in mice infected with <italic>Mycobacterium</italic></bold>. <bold>(A,C,E)</bold> Increase in total and dll4<sup>&#x0002B;</sup> multipotent progenitor cells (lin<sup>&#x02212;</sup>ckit<sup>&#x0002B;</sup>sca1<sup>&#x0002B;</sup>flt3<sup>&#x0002B;</sup>), dll4<sup>&#x0002B;</sup> splenic DC subsets (pooled together from CD4<sup>&#x0002B;</sup>CD11c<sup>&#x0002B;</sup>MHCII<sup>&#x0002B;</sup>, CD8a<sup>&#x0002B;</sup>CD11c<sup>&#x0002B;</sup>MHCII<sup>&#x0002B;</sup>, and CD4<sup>&#x02212;</sup>CD8<sup>&#x02212;</sup>B220<sup>&#x02212;</sup>CD11b<sup>&#x0002B;</sup>CD11c<sup>hi</sup>MHCII<sup>&#x0002B;</sup> populations), and dll4<sup>&#x0002B;</sup> lung conventional dendritic cells (autoflourescent<sup>&#x02212;</sup>CD11c<sup>&#x0002B;</sup>CD11b<sup>&#x0002B;</sup>MHCII<sup>&#x0002B;</sup>) at 5&#x02009;weeks post-infection with 5.0&#x02009;&#x000D7;&#x02009;10<sup>5</sup> BCG <italic>Mycobacterium</italic>. Two-way ANOVA indicated that time was a significant factor in our analysis (&#x0002A;<italic>p</italic>&#x02009;&#x0003C;&#x02009;0.001). <bold>(B,D,F)</bold> Flow cytometry histograms indicating a slight but non-significant increase in DLL4 expression on the cell surface of MPP, B220<sup>&#x02212;</sup>CD11c<sup>&#x0002B;</sup>MHCII<sup>&#x0002B;</sup>, and lung dendritic cells at 5&#x02009;weeks post infection. <bold>(G)</bold> Flow cytometry dot plots depicting total spleen cells from a mouse infected for 5&#x02009;weeks with BCG, an uninfected mouse from the same time point, and an isotype control. <bold>(H)</bold> Histology of murine lungs at 2, 5, and 10&#x02009;weeks post-infection. <bold>(I)</bold> CFU counts from the lung at 2, 5, and 10&#x02009;weeks post-infection. <italic>N</italic>&#x02009;&#x0003D;&#x02009;5 mice per group, and the experiment was repeated three times.</p></caption>
<graphic xlink:href="fimmu-07-00527-g001.tif"/>
</fig>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p><bold>Principle component analysis of cytokine production in response to multiple antigens including PPD, ESAT-6, TB4-10, CFP10, and AG85A, and DLL4 expression in patients with latent TB infection</bold>.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="center" rowspan="2"/>
<th valign="top" align="center" colspan="2">Component<hr/></th>
</tr>
<tr>
<th valign="top" align="center">Antigen specific</th>
<th valign="top" align="center">SEB stimulation</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">ESAT-6 (TNF&#x003B1;)</td>
<td align="center" valign="top">0.936</td>
<td align="center" valign="top">0.153</td>
</tr>
<tr>
<td align="left" valign="top">ESAT-6 (IFN&#x003B3;)</td>
<td align="center" valign="top">0.925</td>
<td align="center" valign="top">0.086</td>
</tr>
<tr>
<td align="left" valign="top">PPD (IL-2)</td>
<td align="center" valign="top">0.875</td>
<td align="center" valign="top">&#x02212;0.320</td>
</tr>
<tr>
<td align="left" valign="top">TB10.4 (IL-2)</td>
<td align="center" valign="top">0.866</td>
<td align="center" valign="top">0.042</td>
</tr>
<tr>
<td align="left" valign="top">PPD (TNF&#x003B1;)</td>
<td align="center" valign="top">0.861</td>
<td align="center" valign="top">&#x02212;0.333</td>
</tr>
<tr>
<td align="left" valign="top">TB10.4 (IFN&#x003B3;)</td>
<td align="center" valign="top">0.860</td>
<td align="center" valign="top">0.024</td>
</tr>
<tr>
<td align="left" valign="top">ESAT-6 (IL-2)</td>
<td align="center" valign="top">0.853</td>
<td align="center" valign="top">0.140</td>
</tr>
<tr>
<td align="left" valign="top">TB10.4 (TNF&#x003B1;)</td>
<td align="center" valign="top">0.848</td>
<td align="center" valign="top">0.046</td>
</tr>
<tr>
<td align="left" valign="top">PPD (IFN&#x003B3;)</td>
<td align="center" valign="top">0.828</td>
<td align="center" valign="top">&#x02212;0.371</td>
</tr>
<tr>
<td align="left" valign="top">Ag85A (IL-2)</td>
<td align="center" valign="top">0.590</td>
<td align="center" valign="top">&#x02212;0.363</td>
</tr>
<tr>
<td align="left" valign="top">DLL4</td>
<td align="center" valign="top">0.561</td>
<td align="center" valign="top">&#x02212;0.267</td>
</tr>
<tr>
<td align="left" valign="top">Ag85A (IFN&#x003B3;)</td>
<td align="center" valign="top">0.469</td>
<td align="center" valign="top">&#x02212;0.379</td>
</tr>
<tr>
<td align="left" valign="top">CFP-10 (IL-2)</td>
<td align="center" valign="top">&#x02212;0.037</td>
<td align="center" valign="top">0.761</td>
</tr>
<tr>
<td align="left" valign="top">CFP-10 (TNF&#x003B1;)</td>
<td align="center" valign="top">&#x02212;0.014</td>
<td align="center" valign="top">0.742</td>
</tr>
<tr>
<td align="left" valign="top">SEB (TNF&#x003B1;)</td>
<td align="center" valign="top">0.431</td>
<td align="center" valign="top">0.724</td>
</tr>
<tr>
<td align="left" valign="top">SEB (IFN&#x003B3;)</td>
<td align="center" valign="top">0.498</td>
<td align="center" valign="top">0.723</td>
</tr>
<tr>
<td align="left" valign="top">SEB (IL-2)</td>
<td align="center" valign="top">0.593</td>
<td align="center" valign="top">0.718</td>
</tr>
<tr>
<td align="left" valign="top">CFP-10 (IFN&#x003B3;)</td>
<td align="center" valign="top">&#x02212;0.012</td>
<td align="center" valign="top">0.717</td>
</tr>
<tr>
<td align="left" valign="top">Ag85A (TNF&#x003B1;)</td>
<td align="center" valign="top">0.238</td>
<td align="center" valign="top">&#x02212;0.306</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="S2-5">
<title>Patient Sample Collection and Animal Welfare</title>
<p>To acquire samples from human patients, this study was carried out in accordance with the recommendations of the Human Research Ethics Committee at the University of Cape Town and the Western Cape Department of Health with written informed consent from all subjects. The protocol was approved by the Human Research Ethics Committee at the University of Cape Town and the Western Cape Department of Health. These same de-identified samples were analyzed at the University of Michigan under IRB exemption HUM00065150, approved by IRBMED. Normal healthy donors were recruited (with written informed consent) from the University of Michigan using a protocol approved by the IRB committee (HUM00075841). All subjects gave written informed consent in accordance with the Declaration of Helsinki. For animal research, the experiments were carried out with recommendations from the Guide for the Care and Use of Laboratory Animals as written by the National Institutes of Health, University of Michigan Institutional Animal Care and Use Committee (IACUC). The protocol for animal use was approved by the University of Michigan IACUC (PRO00006469).</p>
</sec>
</sec>
<sec id="S3">
<title>Results</title>
<p>We have previously shown that DLL4 is upregulated in the lung in response to BCG infection in a TLR9-dependent manner (<xref ref-type="bibr" rid="B31">31</xref>). Experiments in mice have demonstrated that infectious processes at sites distal to the bone marrow can affect stem cell cycling and differentiation (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B7">7</xref>). We hypothesized that mycobacterial infection may also alter the phenotype of bone marrow stem and progenitor cells. By investigating sites distal to the lung, we were able to determine that there is a systemic increase in the percent of cells expressing DLL4<sup>&#x0002B;</sup> cells as a result of mycobacterial infection. In addition to the lung, we observed an increase in DLL4<sup>&#x0002B;</sup> cells in spleen and bone marrow of infected mice, including all splenic DC subsets and bone marrow multipotent progenitors (Figures <xref ref-type="fig" rid="F1">1</xref>A,C,G). In the lung, an increase in DLL4 expression was most prominent on CD11b<sup>&#x0002B;</sup> dendritic cells (Figures <xref ref-type="fig" rid="F1">1</xref>E,F), with no increase in DLL4 expression observed on alveolar macrophages or CD103<sup>&#x0002B;</sup> DCs. Although we observed a slight increase in the mean fluorescence intensity of DLL4 as a result of infection, this did not reach statistical significance (Figures <xref ref-type="fig" rid="F1">1</xref>B,D,F). We observed that the increased DLL4 expression in the bone marrow and spleen was correlated with an increase in granuloma size and CFUs in the lung (Figures <xref ref-type="fig" rid="F1">1</xref>H,I). In the bone marrow, resolution of infection decreased the amount of DLL4 expressed on the surface of multipotent progenitor cells. We also observed age-related changes in DLL4 expression in uninfected mice, a finding that may reflect previous research demonstrating changes in Notch ligand expression in stromal cells as a result of time in human tissues (<xref ref-type="bibr" rid="B34">34</xref>). We were able to verify that our antibody was specific for DLL4 using dendritic cells derived from <italic>Mx<sup>Cre</sup>Dll4<sup>ff</sup></italic> mice (Figure S1 in Supplementary Material). We did not observe an increase in expression of DLL4 in lymphocyte subsets (B cells, CD4<sup>&#x0002B;</sup> T cells, and CD8<sup>&#x0002B;</sup> T cells), hematopoietic stem cells, or common myeloid progenitor cells (Figure S2 in Supplementary Material). DLL4&#x02009;&#x0002B;&#x02009;erythroid progenitors (pre-erythrocyte, pro-erythrocyte, or pre-megakaryocyte) were present in very low numbers and difficult to distinguish from background staining.</p>
<p>To determine if the expression of DLL4 was propagated throughout the hematopoietic system as a result of hematopoiesis, we isolated DLL4<sup>&#x0002B;</sup> and DLL4<sup>&#x02212;</sup> Lineage<sup>&#x02212;</sup> Sca1<sup>&#x0002B;</sup> cKit<sup>&#x0002B;</sup> (LSK) cells from the bone marrow of BCG-infected mice by FACS. Isolated cells were engrafted into lethally irradiated hosts and splenocytes were assessed for DLL4 expression at several time points post engraftment. We observed a significant increase in DLL4 expression in the spleen by flow cytometry on CD11b<sup>&#x0002B;</sup> MHCII<sup>&#x0002B;</sup> cells isolated from recipient mice at 4&#x02009;weeks post-engraftment (Figures <xref ref-type="fig" rid="F2">2</xref>A,B). QPCR from whole spleen demonstrated a 1.8-fold increase in expression of <italic>dll4</italic> at the RNA level (Figure <xref ref-type="fig" rid="F2">2</xref>B). We also observed an increase in DLL4 expression in CD11B<sup>&#x0002B;</sup>MHCII<sup>&#x02212;</sup> cells in the spleen; however, the majority of DLL4 expression was found in the MHCII<sup>&#x0002B;</sup> population (Figures <xref ref-type="fig" rid="F2">2</xref>C,D). We did not observe an increase in expression of DLL4 on lymphocytes in these mice (Figure S3 in Supplementary Material). We did not observe an increase in DLL4 expression in mice receiving DLL4<sup>&#x0002B;</sup> LSK cells at 7&#x02009;days post-engraftment or at 8&#x02009;weeks post-engraftment, suggesting that the expression of DLL4 as a result of hematopoiesis is transient in the absence of BCG infection, and is dependent on donor cell expression of this ligand. Using congenic mice, we verified that the majority of DLL4 expression was detected on donor cells and not on radio-resistant recipient cells at 4&#x02009;weeks post-engraftment (Figure S3 in Supplementary Material).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p><bold>Delta-like 4 expression is maintained during short-term hematopoiesis</bold>. <bold>(A)</bold> Flow cytometry plots depicting dll4 and MHCII staining in total splenocytes from recipient chimera mice 4&#x02009;weeks post-engraftment. Donor cells were either dll4<sup>&#x0002B;</sup> LSK or dll4<sup>&#x02212;</sup> LSK cells isolated from mice infected with 5.0&#x02009;&#x000D7;&#x02009;10<sup>5</sup> cells at 5&#x02009;weeks post-infection. Each mouse received 5.0&#x02009;&#x000D7;&#x02009;10<sup>4</sup> LSK cells. <bold>(B)</bold> QPCR analysis of whole splenocytes for <italic>dll4</italic> expression at 4&#x02009;weeks post-engraftment. <italic>N</italic>&#x02009;&#x0003D;&#x02009;4 mice per group, and the experiment was repeated two times. <bold>(C)</bold> Quantification of dll4 expression on B220<sup>&#x02212;</sup>CD11B<sup>&#x0002B;</sup>MHCII<sup>&#x0002B;</sup> and B220<sup>&#x02212;</sup>CD11B<sup>&#x0002B;</sup>MHCII<sup>&#x02212;</sup> in the spleens of chimeric mice. <italic>N</italic>&#x02009;&#x0003D;&#x02009;4 mice per group. <bold>(D)</bold> Flow plots depicting expression of dll4 on B220<sup>&#x02212;</sup>CD11B<sup>&#x0002B;</sup>MHCII<sup>&#x02212;</sup> cells as quantified in <bold>(C)</bold>. Gates indicate percent of B220<sup>&#x02212;</sup>CD11B<sup>&#x0002B;</sup>MHCII<sup>&#x02212;</sup> cells expressing DLL4. For <bold>(B,C)</bold>, Student&#x02019;s <italic>t</italic>-test was performed (&#x0002A;<italic>p</italic>&#x02009;&#x0003C;&#x02009;0.04). These experiments were repeated two times.</p></caption>
<graphic xlink:href="fimmu-07-00527-g002.tif"/>
</fig>
<p>We then hypothesized that expression of DLL4 could be detected on myeloid cells in the peripheral blood of humans with LTBI or active TB disease. As a negative control for these experiments, we used PPD negative healthy donors who were free of TB disease. Additionally, we tested those patients with active TB disease who had been successfully treated for 6&#x02009;months with standard course anti-TB treatment. We found that those patients with LTBI or active TB disease had a significant increase in DLL4 expression when compared to both active TB patients following 6&#x02009;months of treatment and normal healthy donors (Figure <xref ref-type="fig" rid="F3">3</xref>). When compared to normal healthy donors, this finding was statistically significant when we gated on CD14<sup>hi</sup> PBMCs [<italic>F</italic>(3,41)&#x02009;&#x0003D;&#x02009;3.207, <italic>p</italic>&#x02009;&#x0003D;&#x02009;0.0044]. Comparison of expression of DLL4 on total PBMCs in our cohort of patients also resulted in a statistical significance as determined by ANOVA [<italic>F</italic>(3,36)&#x02009;&#x0003D;&#x02009;1.776, <italic>p</italic>&#x02009;&#x0003D;&#x02009;0.02], but no significant differences were found using Tukey&#x02019;s multiple comparison test.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p><bold>Increased delta-like 4 expression in humans infected with Mtb</bold>. <bold>(A)</bold> Analysis of expression of DLL4 on CD14<sup>&#x0002B;</sup> monocytes in individuals diagnosed with latent or active <italic>M. tuberculosis</italic> infection. <bold>(B)</bold> Flow cytometry plots gated on CD14<sup>&#x0002B;</sup> monocytes, depicting dll4 expression of an individual treated for 6&#x02009;months compared to an individual latently infected with Mtb. One-way ANOVA analysis indicated that DLL4 was expression was significantly altered during Mtb infection (<italic>p</italic>&#x02009;&#x0003D;&#x02009;0.0044).</p></caption>
<graphic xlink:href="fimmu-07-00527-g003.tif"/>
</fig>
<p>Notch ligand expression on APCs has been shown to alter the host immune response to several pathogens (<xref ref-type="bibr" rid="B35">35</xref>&#x02013;<xref ref-type="bibr" rid="B39">39</xref>). For example, we have previously demonstrated that T cell-derived IL-17 production is increased as a result of Dll4 expression in a model of mycobacterial infection (<xref ref-type="bibr" rid="B31">31</xref>). To determine if DLL4 expression altered cytokine production from T cells in humans infected with <italic>M. tuberculosis</italic>, we assessed the CD4 T cell production of TNF&#x003B1;, IFN&#x003B3;, and IL-2 in response to characterized mycobacterial antigens including ESAT-6, TB10.4, Ag85A, CFP-10, and PPD by intracellular cytokine staining in both actively and latently infected individuals. We also assessed the production of these same cytokines in response to the superantigen <italic>Staphylococcal Enterotoxin B</italic> (SEB) as a positive control. We then performed PCA using these data, including the percentage of DLL4<sup>&#x0002B;</sup> monocytes as a factor to determine if DLL4 expression in monocytes was correlated with cytokine production from T cells in latently and actively infected individuals. PCA analysis is routinely used to reduce the number of dimensions in a data set by determining if specific variables track together as a component (<xref ref-type="bibr" rid="B40">40</xref>). Our analysis of latently infected individuals resulted in two components each with an Eigenvalue &#x02265;4. The values in Table <xref ref-type="table" rid="T1">1</xref> state that the correlation between each variable and the two discovered principal components on a scale of 1 to &#x02212;1, with 1 being a 100% correlation. Values of less than 0.3 are considered non-significant. Based on this analysis, we determined that DLL4 expression was correlated with cytokine production from CD4 T cells as a result of stimulation with specific TB antigens including ESAT-6 and PPD in an antigen-specific component. The second component contained all of the cytokine data related to SEB stimulation and was not correlated with DLL4 expression on monocytes. Interestingly, CFP-10 cytokine secretion was associated with the SEB component, suggesting a different pattern of cytokine secretion than that induced by the other antigens. Based on our component matrix (Table S1 in Supplementary Material), which correlates all variables in the data set, we determined that DLL4 expression was most closely correlated with the cytokine response following stimulation with PPD (Table S1 in Supplementary Material). Table S2 in Supplementary Material states that the component containing SEB cytokine stimulation was not related to the component containing DLL4 expression and cytokine production in response to TB antigens. Performing dimension reduction analysis on individuals diagnosed with active TB disease did not result in a component containing DLL4 expression. This analysis informed us that DLL4 expression on monocytes was associated with T cell cytokine production in latently infected individuals. We then performed linear regression analysis to determine if there was a direct correlation between cytokine production and DLL4 expression in both latent infection and active TB disease. Our results indicate an <italic>r</italic><sup>2</sup> value of 0.54 when correlating the percent of CD4<sup>&#x0002B;</sup> T cells producing IFN&#x003B3; and the percentage of monocytes expressing DLL4 in response to PPD. There was no correlation between DLL4 expression and cytokine production in response to SEB (Figure <xref ref-type="fig" rid="F4">4</xref>A). There was no correlation between cytokine production and DLL4 expression on monocytes in patients with active TB disease (Figure <xref ref-type="fig" rid="F4">4</xref>B). There was also no correlation between CD8<sup>&#x0002B;</sup> T cell cytokine production and DLL4 expression (Table S3 in Supplementary Material). Consistent with previous data, there was also reduced frequency of cytokine-producing T cells in patients with active TB (<xref ref-type="bibr" rid="B33">33</xref>).</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p><bold>Delta-like 4 expression correlates with cytokine production from T cells during latent infection</bold>. <bold>(A)</bold> Linear regression analysis of CD4<sup>&#x0002B;</sup> T cell IFN&#x003B3; production, as measured by intracellular cytokine staining, compared to the percent of CD14<sup>&#x0002B;</sup> monocytes expressing DLL4 in individuals diagnosed with latent Mtb infection. Similar results were obtained with IL-2 and TNF&#x003B1; production (Figure S4 in Supplementary Material). <bold>(B)</bold> Same comparison as <bold>(A)</bold> in individuals with active infection. <bold>(C)</bold> Production of IFN&#x003B3; and IL-17 from murine OT-II cells cocultured with OVA peptide and splenic CD11c<sup>&#x0002B;</sup>CD11b<sup>&#x0002B;</sup> FACS sorted from the spleens of na&#x000EF;ve mice or mice infected for 5&#x02009;weeks with BCG in the presence of a polyclonal antibody specific to DLL4 or IgG control antibody. Cells were cultured for 72&#x02009;h in the presence of 10&#x02009;&#x003BC;g/mL anti-DLL4 or control antibody. One-way ANOVA analysis indicated DLL4 was a significant factor in determining cytokine output from T cells. For IFN&#x003B3;, the <italic>p</italic> value was &#x0003C;0.0001, and for IL-17 the <italic>p</italic> value was 0.02.</p></caption>
<graphic xlink:href="fimmu-07-00527-g004.tif"/>
</fig>
<p>To experimentally verify that DLL4 expression on APCs that occurs as a result of BCG infection can alter T cell cytokine production from na&#x000EF;ve T cells, we isolated dendritic cells (CD11c<sup>hi</sup>CD11b<sup>&#x0002B;</sup>) from the spleens of BCG infected mice and uninfected controls and cocultured them with T cells isolated from RAG2<sup>&#x02212;/&#x02212;</sup> mice carrying the OT-II transgene. Cells were stimulated with the peptide OVA<sub>323&#x02013;339</sub> and in the presence of a blocking antibody to DLL4 or a control IgG. We observed that both IFN&#x003B3; and IL-17 were increased in cocultures containing DCs from BCG-infected mice. This increase in cytokine production was reduced when a blocking antibody to DLL4 was added to the culture (Figure <xref ref-type="fig" rid="F4">4</xref>C).</p>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>Our data indicate that the number of cells expressing DLL4 is increased in both early hematopoietic progenitor cells and differentiated myeloid cells in the spleen as a result of lung mycobacterial infection in mice. This systemic upregulation is likely derived both from <italic>de novo</italic> exposure of immune cells to mycobacterial products and from the maintenance of <italic>dll4</italic> expression through hematopoiesis. As a small number of DLL4<sup>&#x0002B;</sup> cells were derived from DLL4<sup>&#x02212;</sup> LSK cells (Figure S3 in Supplementary Material), we do not believe that exposure to <italic>Mycobacterium</italic> or mycobacterial products is the only way to induce expression of this ligand. Several studies support the notion that low-level DLL4 expression is a normal part of the hematopoietic process (<xref ref-type="bibr" rid="B41">41</xref>, <xref ref-type="bibr" rid="B42">42</xref>). Our data suggest that the number of DLL4<sup>&#x0002B;</sup> progenitor cells increases as a result of mycobacterial infection, and that this increased expression is passed on to the progeny of these cells, thus increasing the total amount of DLL4 found within the immune system. Therefore, it is likely that there are a small number of DLL4<sup>&#x0002B;</sup> stem and progenitor cells that exist under non-infectious conditions, and these cells will generate DLL4<sup>&#x0002B;</sup> daughter cells.</p>
<p>Our findings were confirmed using peripheral blood samples from a cohort of patients with either latent or active mTB infection. In both human and mouse, antigen-specific T cell cytokine production is influenced by DLL4 on the cell surface of APCs that occurs as a result of mycobacterial infection. It has previously been reported that certain T cell cytokine responses and expression of cell surface molecules including CD127 correlate with latent and active disease (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B43">43</xref>&#x02013;<xref ref-type="bibr" rid="B45">45</xref>). Although these changes in gene expression hint at a profound change in the innate immune system as a result of immune mTB infection, this response has not been fully characterized.</p>
<p>As the immune response to PPD is correlated with DLL4 expression in individuals with LTBI but not active TB infection, further study of the Notch system in TB may aid in characterization of the differences between immune responses in the setting of LTBI and active TB disease. Previous research suggests that DLL4 can alter the CD4<sup>&#x0002B;</sup> T cell cytokine response and T cell survival (<xref ref-type="bibr" rid="B24">24</xref>&#x02013;<xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B32">32</xref>, <xref ref-type="bibr" rid="B46">46</xref>, <xref ref-type="bibr" rid="B47">47</xref>). Our current data indicate that DLL4 expression on APCs influences the T cell immune response during mTB infection. Furthermore, we demonstrate that DLL4 is upregulated on myeloid progenitor cells as a result of mycobacterial infection, and that this upregulated expression is passed on to daughter cells even after the microbial stimulus was removed. As we were able to observe a DLL4-dependent increase in OT-II T cell cytokine production when stimulating these cells with APCs from BCG-infected mice, we believe that the outcome of this aspect of trained immunity may extend beyond simple increased activation of the innate immune cells. The ability of DLL4 to increase the cytokine response of a na&#x000EF;ve T cell, and the data we present here indicating that expression of this molecule is system wide, indicate that the entire immune response is &#x0201C;primed&#x0201D; for pathogen exposure.</p>
<p>It is of interest that DLL4 expression did not correlate with CD4 cytokine production in patients with active TB disease. This warrants further study and may indicate that Notch signaling is aberrant in those patients with active disease. One possibility is the increase in type 1 IFN pathway that is associated with active TB disease (<xref ref-type="bibr" rid="B48">48</xref>&#x02013;<xref ref-type="bibr" rid="B51">51</xref>) may alter the expression of Notch ligands on the surface of myeloid cells. Type 1 IFN is known to increase in <italic>dll1</italic> expression in murine macrophages, and this ligand has been demonstrated to increase the T cell response to H1N1 influenza infection (<xref ref-type="bibr" rid="B35">35</xref>). In a model of T cell development, low levels of DLL1 and DLL4 expression were found to produce functionally distinct outcomes, with DLL4 inducing more expression of Notch target genes (<xref ref-type="bibr" rid="B52">52</xref>). Therefore, it is possible that the type 1 IFN pathway may alter the adaptive immune response to mycobacterial infection through altered Notch ligand expression. Further examination of monocytes from patients with active TB disease and individuals with LTBI may yield pertinent data on the role of Notch ligand expression in the anti-mycobacterial immune response.</p>
<p>It is of note that the ESAT-6-specific immune response has been documented as differing in both cytokine production and frequency of response in infected individuals when compared to the PPD-specific immune response (<xref ref-type="bibr" rid="B53">53</xref>). It is also possible that PPD, as a mix of antigens, elicits a stronger and more diverse response than a single antigen including ESAT-6 or others. These possibilities may explain why DLL4 expression correlates more strongly with one antigenic response than another.</p>
<p>The systemic wide upregulation of DLL4 may have effects on other cell types besides T cells. For example, macrophages are known to respond to Notch signaling with increased activation (<xref ref-type="bibr" rid="B54">54</xref>, <xref ref-type="bibr" rid="B55">55</xref>). DLL4 is also essential for proper thymocyte development from common lymphoid progenitors (<xref ref-type="bibr" rid="B56">56</xref>). Therefore, a systemic increase in expression of this molecule may alter the host immune response in numerous ways that allow for more effective immune responses to pathogen challenge. Finally, as DLL4 expression is reduced in individuals who have been treated for mycobacterial infection, it is possible that the measurement of this ligand in peripheral blood will generate a biomarker to distinguish infected and uninfected individuals.</p>
</sec>
<sec id="S5" sec-type="author-contributor">
<title>Author Contributions</title>
<p>MS designed and performed experiments, and analyzed data. RA and SK performed experiments and analyzed data; CD designed and performed experiments, and analyzed data; SLK analyzed data and designed experiments.</p>
</sec>
<sec id="S6">
<title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The reviewers AF and CL and the handling editor declared their shared affiliation, and the handling editor states that the process nevertheless met the standards of a fair and objective review.</p>
</sec>
</body>
<back>
<ack>
<p>The authors would like to thank Judith Connett for editing and Drs. Radke and Maillard for <italic>dll4</italic>-deficient mice. They also thank many additional members of the SATVI team who helped with enrollment and evaluation of participants.</p>
</ack>
<sec id="S7">
<title>Funding</title>
<p>This work was supported by National Heart Lung Blood Institute at the National Institutes of Health grants HL112897, HL31237, and HL89216 (SLK), National Institute of Allergy and Infectious Diseases at the National Institutes of Health AI083156 (CD), and the Francis Family Foundation (MS).</p>
</sec>
<sec id="S8" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at <uri xlink:href="http://journal.frontiersin.org/article/10.3389/fimmu.2016.00527/full&#x00023;supplementary-material">http://journal.frontiersin.org/article/10.3389/fimmu.2016.00527/full&#x00023;supplementary-material</uri>.</p>
<supplementary-material xlink:href="Presentation_1.PDF" id="SM1" mimetype="applicationn/PDF" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1"><label>1</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Baldridge</surname> <given-names>MT</given-names></name> <name><surname>King</surname> <given-names>KY</given-names></name> <name><surname>Boles</surname> <given-names>NC</given-names></name> <name><surname>Weksberg</surname> <given-names>DC</given-names></name> <name><surname>Goodell</surname> <given-names>MA</given-names></name></person-group>. <article-title>Quiescent haematopoietic stem cells are activated by IFN-gamma in response to chronic infection</article-title>. <source>Nature</source> (<year>2010</year>) <volume>465</volume>(<issue>7299</issue>):<fpage>793</fpage>&#x02013;<lpage>7</lpage>.<pub-id pub-id-type="doi">10.1038/nature09135</pub-id><pub-id pub-id-type="pmid">20535209</pub-id></citation></ref>
<ref id="B2"><label>2</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>de Bruin</surname> <given-names>AM</given-names></name> <name><surname>Voermans</surname> <given-names>C</given-names></name> <name><surname>Nolte</surname> <given-names>MA</given-names></name></person-group>. <article-title>Impact of interferon-gamma on hematopoiesis</article-title>. <source>Blood</source> (<year>2014</year>) <volume>124</volume>(<issue>16</issue>):<fpage>2479</fpage>&#x02013;<lpage>86</lpage>.<pub-id pub-id-type="doi">10.1182/blood-2014-04-568451</pub-id></citation></ref>
<ref id="B3"><label>3</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>King</surname> <given-names>KY</given-names></name> <name><surname>Goodell</surname> <given-names>MA</given-names></name></person-group>. <article-title>Inflammatory modulation of HSCs: viewing the HSC as a foundation for the immune response</article-title>. <source>Nat Rev Immunol</source> (<year>2011</year>) <volume>11</volume>(<issue>10</issue>):<fpage>685</fpage>&#x02013;<lpage>92</lpage>.<pub-id pub-id-type="doi">10.1038/nri3062</pub-id><pub-id pub-id-type="pmid">21904387</pub-id></citation></ref>
<ref id="B4"><label>4</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Esplin</surname> <given-names>BL</given-names></name> <name><surname>Shimazu</surname> <given-names>T</given-names></name> <name><surname>Welner</surname> <given-names>RS</given-names></name> <name><surname>Garrett</surname> <given-names>KP</given-names></name> <name><surname>Nie</surname> <given-names>L</given-names></name> <name><surname>Zhang</surname> <given-names>Q</given-names></name> <etal/></person-group> <article-title>Chronic exposure to a TLR ligand injures hematopoietic stem cells</article-title>. <source>J Immunol</source> (<year>2011</year>) <volume>186</volume>(<issue>9</issue>):<fpage>5367</fpage>&#x02013;<lpage>75</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1003438</pub-id><pub-id pub-id-type="pmid">21441445</pub-id></citation></ref>
<ref id="B5"><label>5</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nagai</surname> <given-names>Y</given-names></name> <name><surname>Garrett</surname> <given-names>KP</given-names></name> <name><surname>Ohta</surname> <given-names>S</given-names></name> <name><surname>Bahrun</surname> <given-names>U</given-names></name> <name><surname>Kouro</surname> <given-names>T</given-names></name> <name><surname>Akira</surname> <given-names>S</given-names></name> <etal/></person-group> <article-title>Toll-like receptors on hematopoietic progenitor cells stimulate innate immune system replenishment</article-title>. <source>Immunity</source> (<year>2006</year>) <volume>24</volume>(<issue>6</issue>):<fpage>801</fpage>&#x02013;<lpage>12</lpage>.<pub-id pub-id-type="doi">10.1016/j.immuni.2006.04.008</pub-id><pub-id pub-id-type="pmid">16782035</pub-id></citation></ref>
<ref id="B6"><label>6</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sioud</surname> <given-names>M</given-names></name> <name><surname>Floisand</surname> <given-names>Y</given-names></name> <name><surname>Forfang</surname> <given-names>L</given-names></name> <name><surname>Lund-Johansen</surname> <given-names>F</given-names></name></person-group>. <article-title>Signaling through toll-like receptor 7/8 induces the differentiation of human bone marrow CD34&#x0002B; progenitor cells along the myeloid lineage</article-title>. <source>J Mol Biol</source> (<year>2006</year>) <volume>364</volume>(<issue>5</issue>):<fpage>945</fpage>&#x02013;<lpage>54</lpage>.<pub-id pub-id-type="doi">10.1016/j.jmb.2006.09.054</pub-id><pub-id pub-id-type="pmid">17049554</pub-id></citation></ref>
<ref id="B7"><label>7</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Welner</surname> <given-names>RS</given-names></name> <name><surname>Pelayo</surname> <given-names>R</given-names></name> <name><surname>Nagai</surname> <given-names>Y</given-names></name> <name><surname>Garrett</surname> <given-names>KP</given-names></name> <name><surname>Wuest</surname> <given-names>TR</given-names></name> <name><surname>Carr</surname> <given-names>DJ</given-names></name> <etal/></person-group> <article-title>Lymphoid precursors are directed to produce dendritic cells as a result of TLR9 ligation during herpes infection</article-title>. <source>Blood</source> (<year>2008</year>) <volume>112</volume>(<issue>9</issue>):<fpage>3753</fpage>&#x02013;<lpage>61</lpage>.<pub-id pub-id-type="doi">10.1182/blood-2008-04-151506</pub-id><pub-id pub-id-type="pmid">18552210</pub-id></citation></ref>
<ref id="B8"><label>8</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kleinnijenhuis</surname> <given-names>J</given-names></name> <name><surname>Quintin</surname> <given-names>J</given-names></name> <name><surname>Preijers</surname> <given-names>F</given-names></name> <name><surname>Joosten</surname> <given-names>LA</given-names></name> <name><surname>Ifrim</surname> <given-names>DC</given-names></name> <name><surname>Saeed</surname> <given-names>S</given-names></name> <etal/></person-group> <article-title>Bacille Calmette-Guerin induces NOD2-dependent nonspecific protection from reinfection via epigenetic reprogramming of monocytes</article-title>. <source>Proc Natl Acad Sci U S A</source> (<year>2012</year>) <volume>109</volume>(<issue>43</issue>):<fpage>17537</fpage>&#x02013;<lpage>42</lpage>.<pub-id pub-id-type="doi">10.1073/pnas.1202870109</pub-id><pub-id pub-id-type="pmid">22988082</pub-id></citation></ref>
<ref id="B9"><label>9</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Quintin</surname> <given-names>J</given-names></name> <name><surname>Saeed</surname> <given-names>S</given-names></name> <name><surname>Martens</surname> <given-names>JH</given-names></name> <name><surname>Giamarellos-Bourboulis</surname> <given-names>EJ</given-names></name> <name><surname>Ifrim</surname> <given-names>DC</given-names></name> <name><surname>Logie</surname> <given-names>C</given-names></name> <etal/></person-group> <article-title><italic>Candida albicans</italic> infection affords protection against reinfection via functional reprogramming of monocytes</article-title>. <source>Cell Host Microbe</source> (<year>2012</year>) <volume>12</volume>(<issue>2</issue>):<fpage>223</fpage>&#x02013;<lpage>32</lpage>.<pub-id pub-id-type="doi">10.1016/j.chom.2012.06.006</pub-id><pub-id pub-id-type="pmid">22901542</pub-id></citation></ref>
<ref id="B10"><label>10</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Garly</surname> <given-names>ML</given-names></name> <name><surname>Martins</surname> <given-names>CL</given-names></name> <name><surname>Bale</surname> <given-names>C</given-names></name> <name><surname>Balde</surname> <given-names>MA</given-names></name> <name><surname>Hedegaard</surname> <given-names>KL</given-names></name> <name><surname>Gustafson</surname> <given-names>P</given-names></name> <etal/></person-group> <article-title>BCG scar and positive tuberculin reaction associated with reduced child mortality in West Africa. A non-specific beneficial effect of BCG?</article-title> <source>Vaccine</source> (<year>2003</year>) <volume>21</volume>(<issue>21&#x02013;22</issue>):<fpage>2782</fpage>&#x02013;<lpage>90</lpage>.<pub-id pub-id-type="doi">10.1016/S0264-410X(03)00181-6</pub-id><pub-id pub-id-type="pmid">12798618</pub-id></citation></ref>
<ref id="B11"><label>11</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Houben</surname> <given-names>RM</given-names></name> <name><surname>Dodd</surname> <given-names>PJ</given-names></name></person-group>. <article-title>The global burden of latent tuberculosis infection: a re-estimation using mathematical modelling</article-title>. <source>PLoS Med</source> (<year>2016</year>) <volume>13</volume>(<issue>10</issue>):<fpage>e1002152</fpage>.<pub-id pub-id-type="doi">10.1371/journal.pmed.1002152</pub-id><pub-id pub-id-type="pmid">27780211</pub-id></citation></ref>
<ref id="B12"><label>12</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dye</surname> <given-names>C</given-names></name> <name><surname>Scheele</surname> <given-names>S</given-names></name> <name><surname>Dolin</surname> <given-names>P</given-names></name> <name><surname>Pathania</surname> <given-names>V</given-names></name> <name><surname>Raviglione</surname> <given-names>MC</given-names></name></person-group>. <article-title>Consensus statement. Global burden of tuberculosis: estimated incidence, prevalence, and mortality by country. WHO Global Surveillance and Monitoring Project</article-title>. <source>JAMA</source> (<year>1999</year>) <volume>282</volume>(<issue>7</issue>):<fpage>677</fpage>&#x02013;<lpage>86</lpage>.<pub-id pub-id-type="doi">10.1001/jama.282.7.677</pub-id><pub-id pub-id-type="pmid">10517722</pub-id></citation></ref>
<ref id="B13"><label>13</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Getahun</surname> <given-names>H</given-names></name> <name><surname>Matteelli</surname> <given-names>A</given-names></name> <name><surname>Abubakar</surname> <given-names>I</given-names></name> <name><surname>Aziz</surname> <given-names>MA</given-names></name> <name><surname>Baddeley</surname> <given-names>A</given-names></name> <name><surname>Barreira</surname> <given-names>D</given-names></name> <etal/></person-group> <article-title>Management of latent <italic>Mycobacterium tuberculosis</italic> infection: WHO guidelines for low tuberculosis burden countries</article-title>. <source>Eur Respir J</source> (<year>2015</year>) <volume>46</volume>(<issue>6</issue>):<fpage>1563</fpage>&#x02013;<lpage>76</lpage>.<pub-id pub-id-type="doi">10.1183/13993003.01245-2015</pub-id><pub-id pub-id-type="pmid">26405286</pub-id></citation></ref>
<ref id="B14"><label>14</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Green</surname> <given-names>AM</given-names></name> <name><surname>Difazio</surname> <given-names>R</given-names></name> <name><surname>Flynn</surname> <given-names>JL</given-names></name></person-group>. <article-title>IFN-gamma from CD4 T cells is essential for host survival and enhances CD8 T cell function during <italic>Mycobacterium tuberculosis</italic> infection</article-title>. <source>J Immunol</source> (<year>2013</year>) <volume>190</volume>(<issue>1</issue>):<fpage>270</fpage>&#x02013;<lpage>7</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1200061</pub-id></citation></ref>
<ref id="B15"><label>15</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Flory</surname> <given-names>CM</given-names></name> <name><surname>Hubbard</surname> <given-names>RD</given-names></name> <name><surname>Collins</surname> <given-names>FM</given-names></name></person-group>. <article-title>Effects of in vivo T lymphocyte subset depletion on mycobacterial infections in mice</article-title>. <source>J Leukoc Biol</source> (<year>1992</year>) <volume>51</volume>(<issue>3</issue>):<fpage>225</fpage>&#x02013;<lpage>9</lpage>.<pub-id pub-id-type="pmid">1347311</pub-id></citation></ref>
<ref id="B16"><label>16</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Muller</surname> <given-names>I</given-names></name> <name><surname>Cobbold</surname> <given-names>SP</given-names></name> <name><surname>Waldmann</surname> <given-names>H</given-names></name> <name><surname>Kaufmann</surname> <given-names>SH</given-names></name></person-group>. <article-title>Impaired resistance to <italic>Mycobacterium tuberculosis</italic> infection after selective in vivo depletion of L3T4&#x0002B; and Lyt-2&#x0002B; T cells</article-title>. <source>Infect Immun</source> (<year>1987</year>) <volume>55</volume>(<issue>9</issue>):<fpage>2037</fpage>&#x02013;<lpage>41</lpage>.<pub-id pub-id-type="pmid">3114143</pub-id></citation></ref>
<ref id="B17"><label>17</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Leveton</surname> <given-names>C</given-names></name> <name><surname>Barnass</surname> <given-names>S</given-names></name> <name><surname>Champion</surname> <given-names>B</given-names></name> <name><surname>Lucas</surname> <given-names>S</given-names></name> <name><surname>De Souza</surname> <given-names>B</given-names></name> <name><surname>Nicol</surname> <given-names>M</given-names></name> <etal/></person-group> <article-title>T-cell-mediated protection of mice against virulent <italic>Mycobacterium tuberculosis</italic></article-title>. <source>Infect Immun</source> (<year>1989</year>) <volume>57</volume>(<issue>2</issue>):<fpage>390</fpage>&#x02013;<lpage>5</lpage>.<pub-id pub-id-type="pmid">2492259</pub-id></citation></ref>
<ref id="B18"><label>18</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Srivastava</surname> <given-names>S</given-names></name> <name><surname>Ernst</surname> <given-names>JD</given-names></name></person-group>. <article-title>Cutting edge: direct recognition of infected cells by CD4 T cells is required for control of intracellular <italic>Mycobacterium tuberculosis</italic> in vivo</article-title>. <source>J Immunol</source> (<year>2013</year>) <volume>191</volume>(<issue>3</issue>):<fpage>1016</fpage>&#x02013;<lpage>20</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1301236</pub-id><pub-id pub-id-type="pmid">23817429</pub-id></citation></ref>
<ref id="B19"><label>19</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zenaro</surname> <given-names>E</given-names></name> <name><surname>Donini</surname> <given-names>M</given-names></name> <name><surname>Dusi</surname> <given-names>S</given-names></name></person-group>. <article-title>Induction of Th1/Th17 immune response by <italic>Mycobacterium tuberculosis</italic>: role of dectin-1, mannose receptor, and DC-SIGN</article-title>. <source>J Leukoc Biol</source> (<year>2009</year>) <volume>86</volume>(<issue>6</issue>):<fpage>1393</fpage>&#x02013;<lpage>401</lpage>.<pub-id pub-id-type="doi">10.1189/jlb.0409242</pub-id><pub-id pub-id-type="pmid">19773555</pub-id></citation></ref>
<ref id="B20"><label>20</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhatt</surname> <given-names>K</given-names></name> <name><surname>Kim</surname> <given-names>A</given-names></name> <name><surname>Kim</surname> <given-names>A</given-names></name> <name><surname>Mathur</surname> <given-names>S</given-names></name> <name><surname>Salgame</surname> <given-names>P</given-names></name></person-group>. <article-title>Equivalent functions for B7.1 and B7.2 costimulation in mediating host resistance to <italic>Mycobacterium tuberculosis</italic></article-title>. <source>Cell Immunol</source> (<year>2013</year>) <volume>285</volume>(<issue>1&#x02013;2</issue>):<fpage>69</fpage>&#x02013;<lpage>75</lpage>.<pub-id pub-id-type="doi">10.1016/j.cellimm.2013.09.004</pub-id><pub-id pub-id-type="pmid">24099792</pub-id></citation></ref>
<ref id="B21"><label>21</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>LaFoya</surname> <given-names>B</given-names></name> <name><surname>Munroe</surname> <given-names>JA</given-names></name> <name><surname>Mia</surname> <given-names>MM</given-names></name> <name><surname>Detweiler</surname> <given-names>MA</given-names></name> <name><surname>Crow</surname> <given-names>JJ</given-names></name> <name><surname>Wood</surname> <given-names>T</given-names></name> <etal/></person-group> <article-title>Notch: a multi-functional integrating system of microenvironmental signals</article-title>. <source>Dev Biol</source> (<year>2016</year>) <volume>418</volume>(<issue>2</issue>):<fpage>227</fpage>&#x02013;<lpage>41</lpage>.<pub-id pub-id-type="doi">10.1016/j.ydbio.2016.08.023</pub-id><pub-id pub-id-type="pmid">27565024</pub-id></citation></ref>
<ref id="B22"><label>22</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harman</surname> <given-names>BC</given-names></name> <name><surname>Jenkinson</surname> <given-names>EJ</given-names></name> <name><surname>Anderson</surname> <given-names>G</given-names></name></person-group>. <article-title>Microenvironmental regulation of Notch signalling in T cell development</article-title>. <source>Semin Immunol</source> (<year>2003</year>) <volume>15</volume>(<issue>2</issue>):<fpage>91</fpage>&#x02013;<lpage>7</lpage>.<pub-id pub-id-type="doi">10.1016/S1044-5323(03)00005-8</pub-id><pub-id pub-id-type="pmid">12681945</pub-id></citation></ref>
<ref id="B23"><label>23</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schmitt</surname> <given-names>TM</given-names></name> <name><surname>Zuniga-Pflucker</surname> <given-names>JC</given-names></name></person-group>. <article-title>Thymus-derived signals regulate early T-cell development</article-title>. <source>Crit Rev Immunol</source> (<year>2005</year>) <volume>25</volume>(<issue>2</issue>):<fpage>141</fpage>&#x02013;<lpage>59</lpage>.<pub-id pub-id-type="doi">10.1615/CritRevImmunol.v25.i2.40</pub-id><pub-id pub-id-type="pmid">15952934</pub-id></citation></ref>
<ref id="B24"><label>24</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schaller</surname> <given-names>MA</given-names></name> <name><surname>Logue</surname> <given-names>H</given-names></name> <name><surname>Mukherjee</surname> <given-names>S</given-names></name> <name><surname>Lindell</surname> <given-names>DM</given-names></name> <name><surname>Coelho</surname> <given-names>AL</given-names></name> <name><surname>Lincoln</surname> <given-names>P</given-names></name> <etal/></person-group> <article-title>Delta-like 4 differentially regulates murine CD4 T cell expansion via BMI1</article-title>. <source>PLoS One</source> (<year>2010</year>) <volume>5</volume>(<issue>8</issue>):<fpage>e12172</fpage>.<pub-id pub-id-type="doi">10.1371/journal.pone.0012172</pub-id><pub-id pub-id-type="pmid">20808960</pub-id></citation></ref>
<ref id="B25"><label>25</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Helbig</surname> <given-names>C</given-names></name> <name><surname>Gentek</surname> <given-names>R</given-names></name> <name><surname>Backer</surname> <given-names>RA</given-names></name> <name><surname>de Souza</surname> <given-names>Y</given-names></name> <name><surname>Derks</surname> <given-names>IA</given-names></name> <name><surname>Eldering</surname> <given-names>E</given-names></name> <etal/></person-group> <article-title>Notch controls the magnitude of T helper cell responses by promoting cellular longevity</article-title>. <source>Proc Natl Acad Sci U S A</source> (<year>2012</year>) <volume>109</volume>(<issue>23</issue>):<fpage>9041</fpage>&#x02013;<lpage>6</lpage>.<pub-id pub-id-type="doi">10.1073/pnas.1206044109</pub-id><pub-id pub-id-type="pmid">22615412</pub-id></citation></ref>
<ref id="B26"><label>26</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Maekawa</surname> <given-names>Y</given-names></name> <name><surname>Ishifune</surname> <given-names>C</given-names></name> <name><surname>Tsukumo</surname> <given-names>S</given-names></name> <name><surname>Hozumi</surname> <given-names>K</given-names></name> <name><surname>Yagita</surname> <given-names>H</given-names></name> <name><surname>Yasutomo</surname> <given-names>K</given-names></name></person-group>. <article-title>Notch controls the survival of memory CD4&#x0002B; T cells by regulating glucose uptake</article-title>. <source>Nat Med</source> (<year>2015</year>) <volume>21</volume>(<issue>1</issue>):<fpage>55</fpage>&#x02013;<lpage>61</lpage>.<pub-id pub-id-type="doi">10.1038/nm.3758</pub-id><pub-id pub-id-type="pmid">25501905</pub-id></citation></ref>
<ref id="B27"><label>27</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Amsen</surname> <given-names>D</given-names></name> <name><surname>Blander</surname> <given-names>JM</given-names></name> <name><surname>Lee</surname> <given-names>GR</given-names></name> <name><surname>Tanigaki</surname> <given-names>K</given-names></name> <name><surname>Honjo</surname> <given-names>T</given-names></name> <name><surname>Flavell</surname> <given-names>RA</given-names></name></person-group>. <article-title>Instruction of distinct CD4 T helper cell fates by different Notch ligands on antigen-presenting cells</article-title>. <source>Cell</source> (<year>2004</year>) <volume>117</volume>(<issue>4</issue>):<fpage>515</fpage>&#x02013;<lpage>26</lpage>.<pub-id pub-id-type="doi">10.1016/S0092-8674(04)00451-9</pub-id><pub-id pub-id-type="pmid">15137944</pub-id></citation></ref>
<ref id="B28"><label>28</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Schaller</surname> <given-names>MA</given-names></name> <name><surname>Neupane</surname> <given-names>R</given-names></name> <name><surname>Rudd</surname> <given-names>BD</given-names></name> <name><surname>Kunkel</surname> <given-names>SL</given-names></name> <name><surname>Kallal</surname> <given-names>LE</given-names></name> <name><surname>Lincoln</surname> <given-names>P</given-names></name> <etal/></person-group> <article-title>Notch ligand delta-like 4 regulates disease pathogenesis during respiratory viral infections by modulating Th2 cytokines</article-title>. <source>J Exp Med</source> (<year>2007</year>) <volume>204</volume>(<issue>12</issue>):<fpage>2925</fpage>&#x02013;<lpage>34</lpage>.<pub-id pub-id-type="doi">10.1084/jem.20070661</pub-id><pub-id pub-id-type="pmid">17998388</pub-id></citation></ref>
<ref id="B29"><label>29</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Reynolds</surname> <given-names>ND</given-names></name> <name><surname>Lukacs</surname> <given-names>NW</given-names></name> <name><surname>Long</surname> <given-names>N</given-names></name> <name><surname>Karpus</surname> <given-names>WJ</given-names></name></person-group>. <article-title>Delta-like ligand 4 regulates central nervous system T cell accumulation during experimental autoimmune encephalomyelitis</article-title>. <source>J Immunol</source> (<year>2011</year>) <volume>187</volume>(<issue>5</issue>):<fpage>2803</fpage>&#x02013;<lpage>13</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1100160</pub-id><pub-id pub-id-type="pmid">21788444</pub-id></citation></ref>
<ref id="B30"><label>30</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Billiard</surname> <given-names>F</given-names></name> <name><surname>Lobry</surname> <given-names>C</given-names></name> <name><surname>Darrasse-Jeze</surname> <given-names>G</given-names></name> <name><surname>Waite</surname> <given-names>J</given-names></name> <name><surname>Liu</surname> <given-names>X</given-names></name> <name><surname>Mouquet</surname> <given-names>H</given-names></name> <etal/></person-group> <article-title>Dll4-Notch signaling in Flt3-independent dendritic cell development and autoimmunity in mice</article-title>. <source>J Exp Med</source> (<year>2012</year>) <volume>209</volume>(<issue>5</issue>):<fpage>1011</fpage>&#x02013;<lpage>28</lpage>.<pub-id pub-id-type="doi">10.1084/jem.20111615</pub-id><pub-id pub-id-type="pmid">22547652</pub-id></citation></ref>
<ref id="B31"><label>31</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ito</surname> <given-names>T</given-names></name> <name><surname>Schaller</surname> <given-names>M</given-names></name> <name><surname>Hogaboam</surname> <given-names>CM</given-names></name> <name><surname>Standiford</surname> <given-names>TJ</given-names></name> <name><surname>Sandor</surname> <given-names>M</given-names></name> <name><surname>Lukacs</surname> <given-names>NW</given-names></name> <etal/></person-group> <article-title>TLR9 regulates the mycobacteria-elicited pulmonary granulomatous immune response in mice through DC-derived Notch ligand delta-like 4</article-title>. <source>J Clin Invest</source> (<year>2009</year>) <volume>119</volume>(<issue>1</issue>):<fpage>33</fpage>&#x02013;<lpage>46</lpage>.<pub-id pub-id-type="doi">10.1172/JCI35647</pub-id><pub-id pub-id-type="pmid">19075396</pub-id></citation></ref>
<ref id="B32"><label>32</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mukherjee</surname> <given-names>S</given-names></name> <name><surname>Schaller</surname> <given-names>MA</given-names></name> <name><surname>Neupane</surname> <given-names>R</given-names></name> <name><surname>Kunkel</surname> <given-names>SL</given-names></name> <name><surname>Lukacs</surname> <given-names>NW</given-names></name></person-group>. <article-title>Regulation of T cell activation by Notch ligand, DLL4, promotes IL-17 production and Rorc activation</article-title>. <source>J Immunol</source> (<year>2009</year>) <volume>182</volume>(<issue>12</issue>):<fpage>7381</fpage>&#x02013;<lpage>8</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.0804322</pub-id><pub-id pub-id-type="pmid">19494260</pub-id></citation></ref>
<ref id="B33"><label>33</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Day</surname> <given-names>CL</given-names></name> <name><surname>Abrahams</surname> <given-names>DA</given-names></name> <name><surname>Lerumo</surname> <given-names>L</given-names></name> <name><surname>Janse van Rensburg</surname> <given-names>E</given-names></name> <name><surname>Stone</surname> <given-names>L</given-names></name> <name><surname>O&#x02019;Rie</surname> <given-names>T</given-names></name> <etal/></person-group> <article-title>Functional capacity of <italic>Mycobacterium tuberculosis</italic>-specific T cell responses in humans is associated with mycobacterial load</article-title>. <source>J Immunol</source> (<year>2011</year>) <volume>187</volume>(<issue>5</issue>):<fpage>2222</fpage>&#x02013;<lpage>32</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1101122</pub-id><pub-id pub-id-type="pmid">21775682</pub-id></citation></ref>
<ref id="B34"><label>34</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gunin</surname> <given-names>AG</given-names></name> <name><surname>Petrov</surname> <given-names>VV</given-names></name> <name><surname>Golubtzova</surname> <given-names>NN</given-names></name> <name><surname>Vasilieva</surname> <given-names>OV</given-names></name> <name><surname>Kornilova</surname> <given-names>NK</given-names></name></person-group>. <article-title>Age-related changes in angiogenesis in human dermis</article-title>. <source>Exp Gerontol</source> (<year>2014</year>) <volume>55</volume>:<fpage>143</fpage>&#x02013;<lpage>51</lpage>.<pub-id pub-id-type="doi">10.1016/j.exger.2014.04.010</pub-id><pub-id pub-id-type="pmid">24768823</pub-id></citation></ref>
<ref id="B35"><label>35</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ito</surname> <given-names>T</given-names></name> <name><surname>Allen</surname> <given-names>RM</given-names></name> <name><surname>Carson</surname> <given-names>WF</given-names></name> <name><surname>Schaller</surname> <given-names>M</given-names></name> <name><surname>Cavassani</surname> <given-names>KA</given-names></name> <name><surname>Hogaboam</surname> <given-names>CM</given-names></name> <etal/></person-group> <article-title>The critical role of Notch ligand delta-like 1 in the pathogenesis of influenza A virus (H1N1) infection</article-title>. <source>PLoS Pathog</source> (<year>2011</year>) <volume>7</volume>(<issue>11</issue>):<fpage>e1002341</fpage>.<pub-id pub-id-type="doi">10.1371/journal.ppat.1002341</pub-id><pub-id pub-id-type="pmid">22072963</pub-id></citation></ref>
<ref id="B36"><label>36</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Goh</surname> <given-names>F</given-names></name> <name><surname>Irvine</surname> <given-names>KM</given-names></name> <name><surname>Lovelace</surname> <given-names>E</given-names></name> <name><surname>Donnelly</surname> <given-names>S</given-names></name> <name><surname>Jones</surname> <given-names>MK</given-names></name> <name><surname>Brion</surname> <given-names>K</given-names></name> <etal/></person-group> <article-title>Selective induction of the Notch ligand Jagged-1 in macrophages by soluble egg antigen from <italic>Schistosoma mansoni</italic> involves ERK signalling</article-title>. <source>Immunology</source> (<year>2009</year>) <volume>127</volume>(<issue>3</issue>):<fpage>326</fpage>&#x02013;<lpage>37</lpage>.<pub-id pub-id-type="doi">10.1111/j.1365-2567.2008.02979.x</pub-id><pub-id pub-id-type="pmid">19019093</pub-id></citation></ref>
<ref id="B37"><label>37</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Li</surname> <given-names>Y</given-names></name> <name><surname>Wu</surname> <given-names>S</given-names></name> <name><surname>Pu</surname> <given-names>J</given-names></name> <name><surname>Huang</surname> <given-names>X</given-names></name> <name><surname>Zhang</surname> <given-names>P</given-names></name></person-group>. <article-title>Dengue virus up-regulates expression of Notch ligands Dll1 and Dll4 through interferon-beta signalling pathway</article-title>. <source>Immunology</source> (<year>2015</year>) <volume>144</volume>(<issue>1</issue>):<fpage>127</fpage>&#x02013;<lpage>38</lpage>.<pub-id pub-id-type="doi">10.1111/imm.12357</pub-id></citation></ref>
<ref id="B38"><label>38</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mukherjee</surname> <given-names>S</given-names></name> <name><surname>Rasky</surname> <given-names>AJ</given-names></name> <name><surname>Lundy</surname> <given-names>PA</given-names></name> <name><surname>Kittan</surname> <given-names>NA</given-names></name> <name><surname>Kunkel</surname> <given-names>SL</given-names></name> <name><surname>Maillard</surname> <given-names>IP</given-names></name> <etal/></person-group> <article-title>STAT5-induced lunatic fringe during Th2 development alters delta-like 4-mediated Th2 cytokine production in respiratory syncytial virus-exacerbated airway allergic disease</article-title>. <source>J Immunol</source> (<year>2014</year>) <volume>192</volume>(<issue>3</issue>):<fpage>996</fpage>&#x02013;<lpage>1003</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1301991</pub-id><pub-id pub-id-type="pmid">24367028</pub-id></citation></ref>
<ref id="B39"><label>39</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Skokos</surname> <given-names>D</given-names></name> <name><surname>Nussenzweig</surname> <given-names>MC</given-names></name></person-group>. <article-title>CD8- DCs induce IL-12-independent Th1 differentiation through delta 4 Notch-like ligand in response to bacterial LPS</article-title>. <source>J Exp Med</source> (<year>2007</year>) <volume>204</volume>(<issue>7</issue>):<fpage>1525</fpage>&#x02013;<lpage>31</lpage>.<pub-id pub-id-type="doi">10.1084/jem.20062305</pub-id><pub-id pub-id-type="pmid">17576775</pub-id></citation></ref>
<ref id="B40"><label>40</label><citation citation-type="book"><person-group person-group-type="author"><name><surname>Jolliffe</surname> <given-names>IT</given-names></name></person-group>. <source>Principal Component Analysis</source>. <edition>2nd ed</edition>. (Vol. <volume>xxix</volume>). <publisher-loc>New York</publisher-loc>: <publisher-name>Springer</publisher-name> (<year>2002</year>). <fpage>487</fpage> p.</citation></ref>
<ref id="B41"><label>41</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lee</surname> <given-names>SU</given-names></name> <name><surname>Maeda</surname> <given-names>M</given-names></name> <name><surname>Ishikawa</surname> <given-names>Y</given-names></name> <name><surname>Li</surname> <given-names>SM</given-names></name> <name><surname>Wilson</surname> <given-names>A</given-names></name> <name><surname>Jubb</surname> <given-names>AM</given-names></name> <etal/></person-group> <article-title>LRF-mediated Dll4 repression in erythroblasts is necessary for hematopoietic stem cell maintenance</article-title>. <source>Blood</source> (<year>2013</year>) <volume>121</volume>(<issue>6</issue>):<fpage>918</fpage>&#x02013;<lpage>29</lpage>.<pub-id pub-id-type="doi">10.1182/blood-2012-03-418103</pub-id><pub-id pub-id-type="pmid">23134786</pub-id></citation></ref>
<ref id="B42"><label>42</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Remedio</surname> <given-names>L</given-names></name> <name><surname>Carvalho</surname> <given-names>T</given-names></name> <name><surname>Caiado</surname> <given-names>F</given-names></name> <name><surname>Bastos-Carvalho</surname> <given-names>A</given-names></name> <name><surname>Martins</surname> <given-names>D</given-names></name> <name><surname>Duarte</surname> <given-names>A</given-names></name> <etal/></person-group> <article-title>Context- and cell-dependent effects of delta-like 4 targeting in the bone marrow microenvironment</article-title>. <source>PLoS One</source> (<year>2012</year>) <volume>7</volume>(<issue>12</issue>):<fpage>e52450</fpage>.<pub-id pub-id-type="doi">10.1371/journal.pone.0052450</pub-id><pub-id pub-id-type="pmid">23285048</pub-id></citation></ref>
<ref id="B43"><label>43</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Harari</surname> <given-names>A</given-names></name> <name><surname>Rozot</surname> <given-names>V</given-names></name> <name><surname>Enders</surname> <given-names>FB</given-names></name> <name><surname>Perreau</surname> <given-names>M</given-names></name> <name><surname>Stalder</surname> <given-names>JM</given-names></name> <name><surname>Nicod</surname> <given-names>LP</given-names></name> <etal/></person-group> <article-title>Dominant TNF-alpha&#x0002B; <italic>Mycobacterium tuberculosis</italic>-specific CD4&#x0002B; T cell responses discriminate between latent infection and active disease</article-title>. <source>Nat Med</source> (<year>2011</year>) <volume>17</volume>(<issue>3</issue>):<fpage>372</fpage>&#x02013;<lpage>6</lpage>.<pub-id pub-id-type="doi">10.1038/nm.2299</pub-id></citation></ref>
<ref id="B44"><label>44</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lichtner</surname> <given-names>M</given-names></name> <name><surname>Mascia</surname> <given-names>C</given-names></name> <name><surname>Sauzullo</surname> <given-names>I</given-names></name> <name><surname>Mengoni</surname> <given-names>F</given-names></name> <name><surname>Vita</surname> <given-names>S</given-names></name> <name><surname>Marocco</surname> <given-names>R</given-names></name> <etal/></person-group> <article-title>Multifunctional analysis of CD4(&#x0002B;) T-cell response as immune-based model for tuberculosis detection</article-title>. <source>J Immunol Res</source> (<year>2015</year>) <volume>2015</volume>:<fpage>217287</fpage>.<pub-id pub-id-type="doi">10.1155/2015/217287</pub-id></citation></ref>
<ref id="B45"><label>45</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sauzullo</surname> <given-names>I</given-names></name> <name><surname>Mengoni</surname> <given-names>F</given-names></name> <name><surname>Mascia</surname> <given-names>C</given-names></name> <name><surname>Rossi</surname> <given-names>R</given-names></name> <name><surname>Lichtner</surname> <given-names>M</given-names></name> <name><surname>Vullo</surname> <given-names>V</given-names></name> <etal/></person-group> <article-title>Treatment of latent tuberculosis infection induces changes in multifunctional <italic>Mycobacterium tuberculosis</italic>-specific CD4 T cells</article-title>. <source>Med Microbiol Immunol</source> (<year>2015</year>) <volume>205</volume>(<issue>1</issue>):<fpage>37</fpage>&#x02013;<lpage>45</lpage>.<pub-id pub-id-type="doi">10.1007/s00430-015-0424-z</pub-id></citation></ref>
<ref id="B46"><label>46</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jang</surname> <given-names>S</given-names></name> <name><surname>Schaller</surname> <given-names>M</given-names></name> <name><surname>Berlin</surname> <given-names>AA</given-names></name> <name><surname>Lukacs</surname> <given-names>NW</given-names></name></person-group>. <article-title>Notch ligand delta-like 4 regulates development and pathogenesis of allergic airway responses by modulating IL-2 production and Th2 immunity</article-title>. <source>J Immunol</source> (<year>2010</year>) <volume>185</volume>(<issue>10</issue>):<fpage>5835</fpage>&#x02013;<lpage>44</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1000175</pub-id><pub-id pub-id-type="pmid">20944009</pub-id></citation></ref>
<ref id="B47"><label>47</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bailis</surname> <given-names>W</given-names></name> <name><surname>Yashiro-Ohtani</surname> <given-names>Y</given-names></name> <name><surname>Fang</surname> <given-names>TC</given-names></name> <name><surname>Hatton</surname> <given-names>RD</given-names></name> <name><surname>Weaver</surname> <given-names>CT</given-names></name> <name><surname>Artis</surname> <given-names>D</given-names></name> <etal/></person-group> <article-title>Notch simultaneously orchestrates multiple helper T cell programs independently of cytokine signals</article-title>. <source>Immunity</source> (<year>2013</year>) <volume>39</volume>(<issue>1</issue>):<fpage>148</fpage>&#x02013;<lpage>59</lpage>.<pub-id pub-id-type="doi">10.1016/j.immuni.2013.07.006</pub-id><pub-id pub-id-type="pmid">23890069</pub-id></citation></ref>
<ref id="B48"><label>48</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Berry</surname> <given-names>MP</given-names></name> <name><surname>Graham</surname> <given-names>CM</given-names></name> <name><surname>McNab</surname> <given-names>FW</given-names></name> <name><surname>Xu</surname> <given-names>Z</given-names></name> <name><surname>Bloch</surname> <given-names>SA</given-names></name> <name><surname>Oni</surname> <given-names>T</given-names></name> <etal/></person-group> <article-title>An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis</article-title>. <source>Nature</source> (<year>2010</year>) <volume>466</volume>(<issue>7309</issue>):<fpage>973</fpage>&#x02013;<lpage>7</lpage>.<pub-id pub-id-type="doi">10.1038/nature09247</pub-id><pub-id pub-id-type="pmid">20725040</pub-id></citation></ref>
<ref id="B49"><label>49</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cliff</surname> <given-names>JM</given-names></name> <name><surname>Lee</surname> <given-names>JS</given-names></name> <name><surname>Constantinou</surname> <given-names>N</given-names></name> <name><surname>Cho</surname> <given-names>JE</given-names></name> <name><surname>Clark</surname> <given-names>TG</given-names></name> <name><surname>Ronacher</surname> <given-names>K</given-names></name> <etal/></person-group> <article-title>Distinct phases of blood gene expression pattern through tuberculosis treatment reflect modulation of the humoral immune response</article-title>. <source>J Infect Dis</source> (<year>2013</year>) <volume>207</volume>(<issue>1</issue>):<fpage>18</fpage>&#x02013;<lpage>29</lpage>.<pub-id pub-id-type="doi">10.1093/infdis/jis499</pub-id><pub-id pub-id-type="pmid">22872737</pub-id></citation></ref>
<ref id="B50"><label>50</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Novikov</surname> <given-names>A</given-names></name> <name><surname>Cardone</surname> <given-names>M</given-names></name> <name><surname>Thompson</surname> <given-names>R</given-names></name> <name><surname>Shenderov</surname> <given-names>K</given-names></name> <name><surname>Kirschman</surname> <given-names>KD</given-names></name> <name><surname>Mayer-Barber</surname> <given-names>KD</given-names></name> <etal/></person-group> <article-title><italic>Mycobacterium tuberculosis</italic> triggers host type I IFN signaling to regulate IL-1beta production in human macrophages</article-title>. <source>J Immunol</source> (<year>2011</year>) <volume>187</volume>(<issue>5</issue>):<fpage>2540</fpage>&#x02013;<lpage>7</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1100926</pub-id></citation></ref>
<ref id="B51"><label>51</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ottenhoff</surname> <given-names>TH</given-names></name> <name><surname>Dass</surname> <given-names>RH</given-names></name> <name><surname>Yang</surname> <given-names>N</given-names></name> <name><surname>Zhang</surname> <given-names>MM</given-names></name> <name><surname>Wong</surname> <given-names>HE</given-names></name> <name><surname>Sahiratmadja</surname> <given-names>E</given-names></name> <etal/></person-group> <article-title>Genome-wide expression profiling identifies type 1 interferon response pathways in active tuberculosis</article-title>. <source>PLoS One</source> (<year>2012</year>) <volume>7</volume>(<issue>9</issue>):<fpage>e45839</fpage>.<pub-id pub-id-type="doi">10.1371/journal.pone.0045839</pub-id><pub-id pub-id-type="pmid">23029268</pub-id></citation></ref>
<ref id="B52"><label>52</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Mohtashami</surname> <given-names>M</given-names></name> <name><surname>Shah</surname> <given-names>DK</given-names></name> <name><surname>Nakase</surname> <given-names>H</given-names></name> <name><surname>Kianizad</surname> <given-names>K</given-names></name> <name><surname>Petrie</surname> <given-names>HT</given-names></name> <name><surname>Zuniga-Pflucker</surname> <given-names>JC</given-names></name></person-group>. <article-title>Direct comparison of Dll1- and Dll4-mediated Notch activation levels shows differential lymphomyeloid lineage commitment outcomes</article-title>. <source>J Immunol</source> (<year>2010</year>) <volume>185</volume>(<issue>2</issue>):<fpage>867</fpage>&#x02013;<lpage>76</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1000782</pub-id><pub-id pub-id-type="pmid">20548034</pub-id></citation></ref>
<ref id="B53"><label>53</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Brock</surname> <given-names>I</given-names></name> <name><surname>Munk</surname> <given-names>ME</given-names></name> <name><surname>Kok-Jensen</surname> <given-names>A</given-names></name> <name><surname>Andersen</surname> <given-names>P</given-names></name></person-group>. <article-title>Performance of whole blood IFN-gamma test for tuberculosis diagnosis based on PPD or the specific antigens ESAT-6 and CFP-10</article-title>. <source>Int J Tuberc Lung Dis</source> (<year>2001</year>) <volume>5</volume>(<issue>5</issue>):<fpage>462</fpage>&#x02013;<lpage>7</lpage>.<pub-id pub-id-type="pmid">11336278</pub-id></citation></ref>
<ref id="B54"><label>54</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Foldi</surname> <given-names>J</given-names></name> <name><surname>Chung</surname> <given-names>AY</given-names></name> <name><surname>Xu</surname> <given-names>H</given-names></name> <name><surname>Zhu</surname> <given-names>J</given-names></name> <name><surname>Outtz</surname> <given-names>HH</given-names></name> <name><surname>Kitajewski</surname> <given-names>J</given-names></name> <etal/></person-group> <article-title>Autoamplification of Notch signaling in macrophages by TLR-induced and RBP-J-dependent induction of Jagged1</article-title>. <source>J Immunol</source> (<year>2010</year>) <volume>185</volume>(<issue>9</issue>):<fpage>5023</fpage>&#x02013;<lpage>31</lpage>.<pub-id pub-id-type="doi">10.4049/jimmunol.1001544</pub-id><pub-id pub-id-type="pmid">20870935</pub-id></citation></ref>
<ref id="B55"><label>55</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Xu</surname> <given-names>J</given-names></name> <name><surname>Chi</surname> <given-names>F</given-names></name> <name><surname>Tsukamoto</surname> <given-names>H</given-names></name></person-group>. <article-title>Notch signaling and M1 macrophage activation in obesity-alcohol synergism</article-title>. <source>Clin Res Hepatol Gastroenterol</source> (<year>2015</year>) <volume>39</volume>(<issue>Suppl 1</issue>):<fpage>S24</fpage>&#x02013;<lpage>8</lpage>.<pub-id pub-id-type="doi">10.1016/j.clinre.2015.05.016</pub-id><pub-id pub-id-type="pmid">26189984</pub-id></citation></ref>
<ref id="B56"><label>56</label><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Taghon</surname> <given-names>T</given-names></name> <name><surname>Waegemans</surname> <given-names>E</given-names></name> <name><surname>Van de Walle</surname> <given-names>I</given-names></name></person-group>. <article-title>Notch signaling during human T cell development</article-title>. <source>Curr Top Microbiol Immunol</source> (<year>2012</year>) <volume>360</volume>:<fpage>75</fpage>&#x02013;<lpage>97</lpage>.<pub-id pub-id-type="doi">10.1007/82_2012_230</pub-id><pub-id pub-id-type="pmid">22692833</pub-id></citation></ref>
</ref-list>
</back>
</article>