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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1486606</article-id>
<article-id pub-id-type="doi">10.3389/fgene.2024.1486606</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Editorial</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Editorial: Liquid biopsy and new omics technologies in vascular malformations</article-title>
<alt-title alt-title-type="left-running-head">Vaghi et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1486606">10.3389/fgene.2024.1486606</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Vaghi</surname>
<given-names>Massimo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2138831/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Frullanti</surname>
<given-names>Elisa</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/562951/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
</contrib>
<contrib contrib-type="author" corresp="yes" equal-contrib="yes">
<name>
<surname>Palmieri</surname>
<given-names>Maria</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/566859/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Radiologia Interventistica, Ospedale Maggiore di Crema, Largo Ugo Dossena</institution>, <addr-line>Crema</addr-line>, <country>Italy</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Chirurgia Vascolare</institution>, <institution>Ospedale Maggiore di Crema</institution>, <addr-line>Crema</addr-line>, <country>Italy</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Cancer Genomics and Systems Biology Lab</institution>, <institution>Department of Medical Biotechnologies</institution>, <institution>University of Siena</institution>, <addr-line>Siena</addr-line>, <country>Italy</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of Medical Biotechnologies</institution>, <institution>Med Biotech Hub and Competence Centre</institution>, <institution>University of Siena</institution>, <addr-line>Siena</addr-line>, <country>Italy</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited and reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/986328/overview">Maxim B. Freidin</ext-link>, King&#x2019;s College London, United Kingdom</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Maria Palmieri, <email>maria.palmieri@dbm.unisi.it</email>
</corresp>
<fn fn-type="equal" id="fn001">
<label>
<sup>&#x2020;</sup>
</label>
<p>These authors have contributed equally to this work and share last authorship</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>09</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1486606</elocation-id>
<history>
<date date-type="received">
<day>26</day>
<month>08</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>03</day>
<month>09</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Vaghi, Frullanti and Palmieri.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Vaghi, Frullanti and Palmieri</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<related-article id="RA1" related-article-type="commentary-article" journal-id="Front. Genet." xlink:href="https://www.frontiersin.org/researchtopic/51603" ext-link-type="uri">Editorial on the Research Topic <article-title>Liquid biopsy and new omics technologies in vascular malformations</article-title>
</related-article>
<kwd-group>
<kwd>liquid biopsy</kwd>
<kwd>vascular malformations</kwd>
<kwd>omics technologies</kwd>
<kwd>WES</kwd>
<kwd>Cf-DNA</kwd>
<kwd>noninvasive techniques</kwd>
<kwd>high throughput sequencing</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Human and Medical Genomics</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>In recent decades there has been a significant growth in the study of vascular anomalies leading to the identification of molecular pathways and genetic mutations responsible for the formation and progression of these pathologies. Vascular malformations (VM) are congenital anomalies of the blood and lymphatic vessels, therefore many times these are already present at birth, while other times appear in childhood and adolescence (<xref ref-type="bibr" rid="B1">Kunimoto et al., 2022</xref>). VMs, can appear in any part of the body with wide severity, causing pain, swelling and/or discoloration of the skin, blood clotting problems, organ damage, functional or aesthetic problems. VM are rare and occur in about 1% of all births with a frequency of 1 person in 5,000&#x2013;10,000 people (<xref ref-type="bibr" rid="B2">Vikkula et al., 2001</xref>) for the venous malformations, the most common type of vascular anomalies. To date, the treatments available focus on reducing symptoms through sclerotherapy, catheter embolization, laser treatments and radiation therapy (radiosurgery).</p>
<p>Given the rarity of these vascular anomalies and the number of different types of malformations, diagnoses are often difficult, therefore genomic studies are required. Unfortunately, genetic tests involve painful tissue biopsies which are not always feasible and cause anxiety for the patient. For this reason, liquid biopsy has appeared as a new noninvasive investigation technique, applied to the field of vascular malformations.</p>
<p>Due to the pioneering studies about the application of liquid biopsy for the diagnostic investigation of vascular malformations and the huge resource that Next-generation Sequencing techniques represent, such as the whole exome sequencing (WES) to better investigate the congenital prenatal genetic defects, there is an urgent need to pursue these studies. Here, we report the studies that have been published in this Research Topic to respond to these purposes.</p>
</sec>
<sec id="s2">
<title>2 Pioneering approaches and proven next-generation sequencing to discover genetic defects in different research areas</title>
<p>The case report in this Research Topic presented by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1213283">Serio et al.</ext-link> contains a interesting insight about a 61&#xa0;years old female patient, affected by a Klippel Trenaunay Syndrome with a somatic mosaic mutation of <italic>PIK3CA</italic> (p. (E545G)) identified using both cfDNA Next-Generation Sequencing (NGS) liquid biopsy and tissue biopsy. The patient developed a lung bilateral adenocarcinoma arose on <italic>PIK3CA</italic> mutated tissues monitored with cfDNA-NGS liquid biopsy. (<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1213283">Serio et al.</ext-link>).</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1348096">Mansur et al.</ext-link> present a review on vascular malformations exploring molecular biology pathways for the use of drugs widely studied for the treatment of oncological pathologies and also useful nowadays for the treatment of vascular pathologies following a molecular diagnosis possible only through the pioneering use of liquid biopsy applied to VMs. (<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1348096">Mansur et al.</ext-link>).</p>
<p>In the context of using liquid biopsy as a new emerging technique of NGS, <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1249678">Liu et al.</ext-link> present an original article in which they study miRNAs extracted from saliva exosomes of lung cancer patients and healthy controls. Their results suggest that miRNAs from salivary exosomes could be used as biomarkers for lung cancer prediction and diagnosis. (<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1249678">Liu et al.</ext-link>).</p>
<p>The use of liquid biopsy is just the latest Frontier in a large area of techniques called next-generation that allow us to sequence large genomes in a short time. Among these, the one that has been most considered in common scientific and diagnostic use is certainly the WES. Due to the increased demand for WES and the decreased cost of NGS, this technique requires a generous understanding of how experimental design can improve data interpretation and thus improve biological outcomes. The data report article by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1334075">Sun et al.</ext-link> assess the impact of seven popular analysis pipelines to understand the influence of these pipelines on WES results. (<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1334075">Sun et al.</ext-link>).</p>
<p>The use of WES for genetic investigations in the prenatal setting has been introduced as a routine practice in the National Health Service (NHS) in England, receiving favorable opinions from both healthcare personnel, technical and scientific researchers and patients as reported in the original research article by <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1401705">Peter et al.</ext-link>
</p>
</sec>
<sec sec-type="conclusion" id="s3">
<title>3 Conclusion</title>
<p>These positive results are proof that scientific progress on NGS techniques for genetic investigations in different fields, such as oncology, prenatal and vascular malformations as reported here, are going in the right direction and proceeding at a brisk pace.</p>
</sec>
</body>
<back>
<sec id="s4">
<title>Author contributions</title>
<p>MV: Writing&#x2013;review and editing. EF: Writing&#x2013;review and editing. MP: Conceptualization, Writing&#x2013;review and editing.</p>
</sec>
<ack>
<p>We deeply thank all the authors and reviewers who have participated in this Research Topic.</p>
</ack>
<sec sec-type="COI-statement" id="s5">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
<p>The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.</p>
</sec>
<sec sec-type="disclaimer" id="s6">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
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</article>