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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1122864</article-id>
<article-id pub-id-type="doi">10.3389/fgene.2023.1122864</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Promoter methylation might shift the balance of Galectin-3 &#x26; 12 expression in <italic>de novo</italic> adult acute myeloid leukemia patients</article-title>
<alt-title alt-title-type="left-running-head">Assem et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1122864">10.3389/fgene.2023.1122864</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Assem</surname>
<given-names>Magda</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2197207/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>El-Araby</surname>
<given-names>Rady E.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Al-Karmalawy</surname>
<given-names>Ahmed A.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1148132/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Nabil</surname>
<given-names>Reem</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kamal</surname>
<given-names>Mohamed A. M.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Belal</surname>
<given-names>Amany</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1062188/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ghamry</surname>
<given-names>Heba I.</given-names>
</name>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1777508/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Abourehab</surname>
<given-names>Mohammed A. S.</given-names>
</name>
<xref ref-type="aff" rid="aff9">
<sup>9</sup>
</xref>
<xref ref-type="aff" rid="aff10">
<sup>10</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1686155/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ghoneim</surname>
<given-names>Mohammed M.</given-names>
</name>
<xref ref-type="aff" rid="aff11">
<sup>11</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Alshahrani</surname>
<given-names>Mohammad Y.</given-names>
</name>
<xref ref-type="aff" rid="aff12">
<sup>12</sup>
</xref>
<xref ref-type="aff" rid="aff13">
<sup>13</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>El Leithy</surname>
<given-names>Asmaa A.</given-names>
</name>
<xref ref-type="aff" rid="aff14">
<sup>14</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2138302/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Clinical Pathology Department</institution>, <institution>National Cancer Institute</institution>, <institution>Cairo University</institution>, <addr-line>Cairo</addr-line>, <country>Egypt</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Division of Oral Biology</institution>, <institution>Department of Periodontology</institution>, <institution>Tufts University School of Medicine</institution>, <addr-line>Boston</addr-line>, <addr-line>MA</addr-line>, <country>United States</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Central Lab</institution>, <institution>Theodor Bilharz Research Institute (TBRI)</institution>, <institution>Ministry of Scientific Research</institution>, <addr-line>Cairo</addr-line>, <country>Egypt</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Pharmaceutical Chemistry Department</institution>, <institution>Faculty of Pharmacy</institution>, <institution>Ahram Canadian University</institution>, <addr-line>Giza</addr-line>, <country>Egypt</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Clinical Pathology Department</institution>, <institution>El-Hussein University Hospital</institution>, <institution>Al-Azhar University</institution>, <addr-line>Cairo</addr-line>, <country>Egypt</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Medicinal Chemistry Department</institution>, <institution>Faculty of Pharmacy</institution>, <institution>Beni-Suef University</institution>, <addr-line>Beni-Suef</addr-line>, <country>Egypt</country>
</aff>
<aff id="aff7">
<sup>7</sup>
<institution>Department of Pharmaceutical Chemistry</institution>, <institution>College of Pharmacy</institution>, <institution>Taif University</institution>, <addr-line>Taif</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff8">
<sup>8</sup>
<institution>Department of Home Economics</institution>, <institution>College of Home Economics</institution>, <institution>King Khalid University</institution>, <addr-line>Abha</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff9">
<sup>9</sup>
<institution>Department of Pharmaceutics and Industrial Pharmacy</institution>, <institution>College of Pharmacy</institution>, <institution>Minia University</institution>, <addr-line>Minia</addr-line>, <country>Egypt</country>
</aff>
<aff id="aff10">
<sup>10</sup>
<institution>Department of Pharmaceutics</institution>, <institution>Faculty of Pharmacy</institution>, <institution>Umm Al-Qura University</institution>, <addr-line>Makkah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff11">
<sup>11</sup>
<institution>Department of Pharmacy Practice</institution>, <institution>College of Pharmacy</institution>, <institution>AlMaarefa University</institution>, <addr-line>Ad Diriyah</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff12">
<sup>12</sup>
<institution>Research Center for Advanced Materials Science (RCAMS)</institution>, <institution>King Khalid University</institution>, <addr-line>Abha</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff13">
<sup>13</sup>
<institution>Department of Clinical Laboratory Sciences</institution>, <institution>College of Applied Medical Sciences</institution>, <institution>King Khalid University</institution>, <addr-line>Abha</addr-line>, <country>Saudi Arabia</country>
</aff>
<aff id="aff14">
<sup>14</sup>
<institution>College of Biotechnology</institution>, <institution>Misr University for Science and Technology (MUST)</institution>, <addr-line>Giza</addr-line>, <country>Egypt</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/609890/overview">Huazhang Wu</ext-link>, Bengbu Medical College, China</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/82725/overview">Udayan Bhattacharya</ext-link>, NewYork-Presbyterian, United States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/557330/overview">Ritu Gupta</ext-link>, All India Institute of Medical Sciences, India</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Ahmed A. Al-Karmalawy, <email>akarmalawy@acu.edu.eg</email>; Asmaa A. El Leithy, <email>asmaa.elleithy@must.edu.eg</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Cancer Genetics and Oncogenomics, a section of the journal Frontiers in Genetics</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>13</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1122864</elocation-id>
<history>
<date date-type="received">
<day>13</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>01</day>
<month>02</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Assem, El-Araby, Al-Karmalawy, Nabil, Kamal, Belal, Ghamry, Abourehab, Ghoneim, Alshahrani and El Leithy.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Assem, El-Araby, Al-Karmalawy, Nabil, Kamal, Belal, Ghamry, Abourehab, Ghoneim, Alshahrani and El Leithy</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Acute myeloid leukemia (AML) was reported as the most common type of leukemia among adults. Galectins constitute a family of galactose-binding proteins reported to play a critical role in many malignancies including AML. Galectin-3 and -12 are members of the mammalian galectin family. To understand the contribution of galectin-3 and -12 promoter methylation to their expression, we performed bisulfite methylation-specific (MSP)-PCR and bisulfite genomic sequencing (BGS) of primary leukemic cells in patients with <italic>de novo</italic> AML before receiving any therapy. Here, we show a significant loss of <italic>LGALS12</italic> gene expression in association with promoter methylation. The lowest degree of expression was found in the methylated (M) group while the highest degree was in the unmethylated (U) group and the partially methylated (P) group expression lies in between. This was not the case with galectin-3 in our cohort unless the CpG sites analyzed were outside the frame of the studied fragment. We were also able to identify four CpG sites (CpG number 1, 5, 7&#x26; 8) in the promoter region of galectin-12; these sites must be unmethylated so that expression can be induced. As far as the authors know, these findings were not previously concluded in earlier studies.</p>
</abstract>
<kwd-group>
<kwd>acute myeloid leukemia</kwd>
<kwd>promoter methylation</kwd>
<kwd>galectin-12</kwd>
<kwd>galectin-3</kwd>
<kwd>PCR</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Galectins an evolutionary conserved family are classified into three structural groups. Galectins are characterized by their ability to bind specific carbohydrates involved in a variety of cellular functions including cancer (<xref ref-type="bibr" rid="B42">Verkerke et al., 2022</xref>). This family of proteins is encoded by the <italic>LGALS</italic> genes family in humans and acts as an important recognizing factor towards cancer-associated glycoproteins (<xref ref-type="bibr" rid="B45">Yang et al., 2008</xref>). Their expression is very firmly controlled. Altered galectin expression is a hallmark of many cancer cells (<xref ref-type="bibr" rid="B26">Katzenmaier et al., 2017</xref>). Galectins can either be tumor promoters or suppressors based on their target cells (<xref ref-type="bibr" rid="B29">Kopitz et al., 2001</xref>). Furthermore, these family members had a prognostic influence on various types of malignancies including leukemias (<xref ref-type="bibr" rid="B32">Pena et al., 2014</xref>; <xref ref-type="bibr" rid="B12">Chetry et al., 2022</xref>). Galectin-12 structurally belongs to the galectins group which contains two homologous carbohydrate recognition domains (CRDs). Galectin-12 is a galectin family member encoded by the <italic>LGALS12</italic> gene with a partial expression in leukocytes and adipocytes (<xref ref-type="bibr" rid="B43">Xue et al., 2016</xref>). While, galectin-3 belongs to another galectin structural group (chimera group with only one CRD) was reported to play an important role in cancerous&#x27;-microenvironments, especially in acute myeloid leukemia (AML) (<xref ref-type="bibr" rid="B8">Burger, 2011</xref>; <xref ref-type="bibr" rid="B25">Icard et al., 2014</xref>; <xref ref-type="bibr" rid="B18">Evans and Calvi, 2015</xref>; <xref ref-type="bibr" rid="B23">Han et al., 2015</xref>; <xref ref-type="bibr" rid="B33">Pereira et al., 2015</xref>).</p>
<p>AML was reported as a disease with high heterogeneity, is also considered the highest hematologic malignancy in its fatality rate (<xref ref-type="bibr" rid="B10">Chen et al., 2013</xref>; <xref ref-type="bibr" rid="B7">Bray et al., 2018</xref>; <xref ref-type="bibr" rid="B39">Siegel et al., 2020</xref>). Despite the existence of various medications which were approved for patients with AML in the last few years, AML remains a condition with unmet medical needs (<xref ref-type="bibr" rid="B6">Bewersdorf and Abdel-Wahab, 2022</xref>).</p>
<p>It was reported that epigenetic dysregulation might contribute to the development of hematological malignancies, such as hypomethylation or increased methylation of the CpG islands in the promoter region of key genes (<xref ref-type="bibr" rid="B22">Gutierrez and Romero-Oliva, 2013</xref>). Epigenetic regulation of galectin-1,-3 &#x26;-7 was suggested to play a critical role in cancer progression (<xref ref-type="bibr" rid="B13">Chiariotti et al., 1994</xref>; <xref ref-type="bibr" rid="B34">Poirier et al., 2001</xref>; <xref ref-type="bibr" rid="B30">Margadant et al., 2012</xref>; <xref ref-type="bibr" rid="B28">Kim et al., 2013</xref>). Galectin-12 was shown to be silenced by DNA methylation in colorectal cancer (CRC) cell lines and primary samples (<xref ref-type="bibr" rid="B43">Xue et al., 2016</xref>; <xref ref-type="bibr" rid="B26">Katzenmaier et al., 2017</xref>). Moreover, previous studies showed that <italic>LGALS3</italic> promoter CpG islands were heavily methylated in the early stages of prostate adenocarcinoma (<xref ref-type="bibr" rid="B2">Ahmed and Bandyopadhyaya, 2015</xref>). Interestingly, another study reported that the average methylation degree of five CpG sites in the <italic>LGALS3</italic> gene regulatory region was significantly decreased in thyroid cancer tissues (<xref ref-type="bibr" rid="B27">Keller et al., 2013</xref>). Subsequently, the present study was conducted to address the analysis of methylation patterns in galectin-3 and -12 promoter regions in patients with <italic>de novo</italic> AML.</p>
<sec id="s1-1">
<title>Aim of the study</title>
<p>The present study aims to investigate to what extent the methylation patterns of <italic>LGALS 3 &#x26; 12</italic> promoter region are correlated with <italic>LGALS 3 &#x26; 12</italic> gene expression in adult AML patients.</p>
</sec>
<sec id="s1-2">
<title>The research basis</title>
<p>This study was based on two previous findings:</p>
<p>First, the expression profiling of eight galectins was previously performed in adult AML. Interestingly, galectin-12 was the only galectin that showed a survival advantage in AML patients when overexpressed in peripheral blood (PB) (<xref ref-type="bibr" rid="B17">El Leithy et al., 2015</xref>). In addition, galectin-3 was almost exclusively downregulated in both PB&#x26; bone marrow (BM) (<xref ref-type="bibr" rid="B17">El Leithy et al., 2015</xref>; <xref ref-type="bibr" rid="B1">Abdelfattah et al., 2021</xref>).</p>
<p>Second, alteration of DNA methylation was frequently encountered in AML (<xref ref-type="bibr" rid="B28">Kim et al., 2013</xref>). Aberrant methylation of cytosine-5 at CpG sites were clustered in the gene promoter regions. Furthermore, DNA methylation was found to correlate with prognosis in AML (<xref ref-type="bibr" rid="B40">Toyota et al., 2001</xref>; <xref ref-type="bibr" rid="B15">Deneberg et al., 2010</xref>; <xref ref-type="bibr" rid="B4">Bacigalupo et al., 2013</xref>; <xref ref-type="bibr" rid="B9">Chattopadhyaya and Ghosal, 2022</xref>).</p>
<p>We conduct this study to find out whether reduced expression of galectins-3 and -12 are associated with methylation of CpG islands in their promoter region.</p>
</sec>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and methods</title>
<sec id="s2-1">
<title>Patient cohort and collection of samples</title>
<p>This cohort study included 171 samples; 73 BM and 98&#xa0;PB samples from AML patients, 97 males (56.7%) and 74 females (43.3%) with a mean age of 38.5&#xa0;years (SD 12.5) ranging from 18 to 63&#xa0;years. All of these patients were presented to the inpatient clinic at the National Cancer Institute (NCI), Cairo University (CU), diagnosed between July 2012 to December 2017. Patients underwent routine laboratory investigations and imaging diagnoses and were classified according to the standard morphological and immunophenotyping (IPT) criteria. All samples were collected before treatment; patients were treated intensively with the standard protocol. Patients with acute promyelocytic leukemia (APL) were given All-trans retinoic acid (ATRA). Other FAB subtypes were given the 3 &#x2b; 7 treatment protocol. Response to induction therapy was assessed between days 14 and 28 after induction therapy and none of them received hypomethylating therapy. Written informed consents were obtained from the patients or their legal guardians, and this study was approved by the ethical committee of NCI, CU, Egypt, and was in accordance with the 2011 Declaration of Helsinki (IRP Approval No. 201902012.4). The age and sex-matched group consists of 15&#xa0;PB samples from healthy donors from the same hospital, and eight BM samples from volunteers for BM transplantation were selected as a control group.</p>
</sec>
<sec id="s2-2">
<title>Methods</title>
<p>The present study sample size was estimated according to sample size estimation using the G&#x2a;Power program (University of D&#xfc;sseldorf, D&#xfc;sseldorf, Germany) which is related to our previous work (<xref ref-type="bibr" rid="B17">El Leithy et al., 2015</xref>; <xref ref-type="bibr" rid="B1">Abdelfattah et al., 2021</xref>). The molecular assays were done on BM and PB whole white blood cell pellets; the initial blast cells median was 54% (ranging from 30% to 98%). It should be mentioned that the patient number is not the same in each technique depending on the availability of the samples in the lab. However, all samples were selected out of consecutive cohorts which meet the study eligibility criteria. That&#x2019;s to say methylation analysis and gene expression were done on the same patients, after normalization of the genes expression to healthy donors, while the methylation analysis was assessed only in the patient cohort. This was done to evaluate the effect of the genes promotor methylation on the corresponding gene expression in the same samples.</p>
</sec>
<sec id="s2-3">
<title>RNA extraction and quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR)</title>
<p>The total cellular RNA from the number of BM and PB blood samples was purified to profile and associate the expression of <italic>LGALS 3 &#x26; 12</italic>. This was done using Invitrogen&#x2122; TRIzol&#x2122; Reagent (Invitrogen&#x2122;, Thermo Fisher Scientific). Afterwards it was reversely transcribed to cDNA using Applied Biosystems&#x2122; (Thermo Fisher Scientific). The qRT-PCR was performed using Applied Biosystems PowerUp&#x2122; SYBR&#x2122; Green Master Mix (Thermo Fisher Scientific) according to the manufacturer&#x2019;s instruction on Applied Biosystems Step One&#x2122; Real-Time PCR System (Thermo Fisher Scientific). The sequences of the forward and reverse primers related to <italic>LGALS3</italic>, <italic>LGALS12,</italic> and <italic>GAPDH</italic> are shown in <xref ref-type="table" rid="T1">Table 1</xref>. The primers were designed using the Primer-BLAST tool available on the NCBI website (<ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/tools/primer-blast/">https://www.ncbi.nlm.nih.gov/tools/primer-blast/</ext-link>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>The sequences of the forward and reverse primers for LGALS 3, 12, &#x26; GAPDH.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center">Gene</th>
<th align="center">Primer sequence</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">
<italic>LGALS3</italic>
</td>
<td align="left"/>
</tr>
<tr>
<td align="center">Forward</td>
<td align="center">ATG&#x200b;GCA&#x200b;GAC&#x200b;AAT&#x200b;TTT&#x200b;TCG&#x200b;CTC&#x200b;C</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">GCC&#x200b;TGT&#x200b;CCA&#x200b;GGA&#x200b;TAA&#x200b;GCC&#x200b;C</td>
</tr>
<tr>
<td align="center">
<italic>LGALS12</italic>
</td>
<td align="left"/>
</tr>
<tr>
<td align="center">Forward</td>
<td align="center">GCC&#x200b;TGG&#x200b;GCA&#x200b;GGT&#x200b;CAT&#x200b;CAT&#x200b;AG</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">GAG&#x200b;TTC&#x200b;TGT&#x200b;CTG&#x200b;CGA&#x200b;AGG&#x200b;AGG</td>
</tr>
<tr>
<td align="center">
<italic>GAPDH</italic>
</td>
<td align="left"/>
</tr>
<tr>
<td align="center">Forward</td>
<td align="center">CTG&#x200b;GGC&#x200b;TAC&#x200b;ACT&#x200b;GAG&#x200b;CAC&#x200b;C</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">AAG&#x200b;TGG&#x200b;TCG&#x200b;TTG&#x200b;AGG&#x200b;GCA&#x200b;ATG</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2-4">
<title>Differential DNA methylation analysis</title>
<p>Genomic DNA extraction and bisulfite conversion: Genomic DNA was isolated from 52 BM samples using G-spin&#x2122; Total DNA Extraction Mini Kit (LiliF Diagnostic Products). Then genomic DNA was bisulfite-modified using Thermo Scientific&#x2122; EpiJET&#x2122; Bisulfite Conversion Kit (Thermo Fisher Scientific) according to the manufacturer&#x2019;s instruction. Subsequently, to investigate the effect of the DNA methylation on galectin-3&#x26;12 expressions in AML patients, methylation was analyzed by two methods on two separate cohorts as follows: 1- methylation-specific (MSP)-PCR for <italic>LGALS3 &#x26; 12</italic> in 24 cases and 2- bisulfite genomic sequencing (BGS) for <italic>LGALS12</italic> in 28 cases.</p>
</sec>
<sec id="s2-5">
<title>Methylation-specific (MSP)-PCR for <italic>LGALS3 &#x26; 12</italic>
</title>
<p>The methylation pattern of <italic>LGALS3 &#x26; 12</italic> genes promoter region was carried out on 24 subjects. For performing MSP, four pairs of primers were applied and specified for the methylated and un-methylated targeted sequences as shown in <xref ref-type="fig" rid="F1">Figures 1A, B</xref>. Primer sequences are shown in <xref ref-type="table" rid="T2">Table 2</xref>. All of the MSP primers were designed using the MethPrimer design tool (<ext-link ext-link-type="uri" xlink:href="http://www.urogene.org/methprimer/">http://www.urogene.org/methprimer/</ext-link>). Then the specificity of the primers was applied using the &#x201c;by search&#x201d; tool.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<italic>LGALS3 &#x26; 12</italic> promoter regions: <bold>(A)</bold> Promoter region of <italic>LGALS3</italic>: Chromosome 14: 55128400-55132801 &#x26; <bold>(B)</bold> Promoter region of <italic>LGALS12</italic>: Chromosome 11: 63490635-63492346.</p>
</caption>
<graphic xlink:href="fgene-14-1122864-g001.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Profile of primers used in MSP.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th colspan="2" align="center">Gene</th>
<th align="center">Primer</th>
<th align="center">Sequence</th>
<th align="center">Product size (bp)</th>
<th align="center">Tm (<sup>&#x2e30;</sup>C)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="4" align="center">
<bold>
<italic>LGALS3</italic>
</bold>
</td>
<td rowspan="2" align="center">
<bold>Methylated</bold>
</td>
<td align="center">Forward</td>
<td align="center">AGT&#x200b;AAG&#x200b;TTT&#x200b;TAT&#x200b;TCG&#x200b;GTG&#x200b;ACG&#x200b;AGT&#x200b;C</td>
<td rowspan="2" align="center">192</td>
<td rowspan="2" align="center">57</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">TAT&#x200b;ACA&#x200b;ATC&#x200b;CTA&#x200b;AAA&#x200b;AAT&#x200b;CCC&#x200b;TTC&#x200b;G</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>Unmethylated</bold>
</td>
<td align="center">Forward</td>
<td align="center">AAG&#x200b;TTT&#x200b;TAT&#x200b;TTG&#x200b;GTG&#x200b;ATG&#x200b;AGT&#x200b;TGT</td>
<td rowspan="2" align="center">187</td>
<td rowspan="2" align="center">58</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">TAC&#x200b;AAT&#x200b;CCT&#x200b;AAA&#x200b;AAA&#x200b;TCC&#x200b;CTT&#x200b;CAC&#x200b;T</td>
</tr>
<tr>
<td rowspan="4" align="center">
<bold>
<italic>LGALS12</italic>
</bold>
</td>
<td rowspan="2" align="center">
<bold>Methylated</bold>
</td>
<td align="center">Forward</td>
<td align="center">GGT&#x200b;ATA&#x200b;GTT&#x200b;GAA&#x200b;CGT&#x200b;TTG&#x200b;AGC&#x200b;GT</td>
<td rowspan="2" align="center">177</td>
<td rowspan="2" align="center">59</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">TAC&#x200b;AAA&#x200b;ACC&#x200b;TAA&#x200b;AAA&#x200b;CCG&#x200b;ACG&#x200b;AA</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>Unmethylated</bold>
</td>
<td align="center">Forward</td>
<td align="center">GGG&#x200b;GTA&#x200b;TAG&#x200b;TTG&#x200b;AAT&#x200b;GTT&#x200b;TGA&#x200b;GTG&#x200b;T</td>
<td rowspan="2" align="center">181</td>
<td rowspan="2" align="center">60</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">CCT&#x200b;ACA&#x200b;AAA&#x200b;CCT&#x200b;AAA&#x200b;AAC&#x200b;CAA&#x200b;CAA&#x200b;A</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Amplification was carried out in a thermocycler. For controlling and optimizing the MSP reactions, the EpiTect&#xae; PCR Control DNA Kit (Qiagen, Hilden, Germany) was used according to the manufacturer&#x2019;s instructions. Methylation in this case is considered based on the amplification shown by samples with M primer as well as with both M and U primers. Samples showing amplification with only U were considered as unmethylated. Bands corresponding to methylated partners determined complete methylation. Partial methylation is determined by bands corresponding with both M and U primers.</p>
</sec>
<sec id="s2-6">
<title>Genomic DNA methylation sequencing of galectin-12 as a validation method for its methylation pattern</title>
<p>The second cohort included twenty-eight BM samples at diagnosis; they were enrolled for targeted bisulfite sequencing. MethPrimer software, (<ext-link ext-link-type="uri" xlink:href="http://www.urogene.org/cgi-bin/methprimer/methprimer.cgi">http://www.urogene.org/cgi-bin/methprimer/methprimer.cgi</ext-link>), was used for designing a specific set of primer pairs (M13-tailed PCR and <italic>LGALS12</italic> primers) shown in <xref ref-type="table" rid="T3">Table 3</xref> that binds only to bisulfite-modified DNA. This analysis was focused on a genomic region rich in CpG islands (by using DBCAT software, <ext-link ext-link-type="uri" xlink:href="http://dbcat.cgm.ntu.edu.tw/">http://dbcat.cgm.ntu.edu.tw</ext-link>), containing 11 CpGs at nt &#x2212;445 to nt &#x2212;213 upstream of exon 1 in the predicted promoter region of <italic>LGALS12</italic>. This region also includes binding site for the transcription factor well known as SP1 that binds to GC-rich motives of many promoters (<xref ref-type="bibr" rid="B26">Katzenmaier et al., 2017</xref>).</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Profile of primer used for CpG methylation analysis (used in BGS).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center"/>
<th align="center">Primer used for CpG methylation analysis</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">
<bold>M13 tailed</bold>
</td>
<td align="left"/>
</tr>
<tr>
<td align="center">Forward</td>
<td align="center">GTAAAACGACGGCCAG</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">CAGGAAACAGCTATGAC</td>
</tr>
<tr>
<td align="center">
<bold>
<italic>LGALS12</italic> gene</bold>
</td>
<td align="left"/>
</tr>
<tr>
<td align="center">Forward</td>
<td align="center">GAG&#x200b;TTT&#x200b;TAG&#x200b;GGG&#x200b;GTT&#x200b;GTA&#x200b;AAA&#x200b;TTT</td>
</tr>
<tr>
<td align="center">Reverse</td>
<td align="center">AAT&#x200b;CTT&#x200b;ACT&#x200b;CTC&#x200b;TTA&#x200b;CCA&#x200b;AAC&#x200b;TAC&#x200b;A</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>PCR reaction was carried out on Applied Biosystems&#x2122; Veriti&#x2122; 96-Well Fast Thermal Cycler (Thermo Fisher Scientific). Sequencing was carried out using BigDye&#x2122; Terminator v3.1 Cycle Sequencing Kit (Thermo Fisher Scientific) according to the manufacturer&#x2019;s instructions after the cycle sequencing. Products were purified using The BigDye&#xae; XTerminator&#x2122; Purification Kit (Thermo Fisher Scientific). Applied Biosystems&#x2122; 3500 XL Genetic Analyzer (Thermo Fisher Scientific) carried out targeted automatic bisulfite sequencing reaction and sequencing data analysis.</p>
</sec>
<sec id="s2-7">
<title>Statistical analysis</title>
<p>The data were analyzed using a statistical package for social science &#x2018;IBM SPSS Statistics for Windows, version 26 (IBM Corp., Armonk, N.Y., United States). Continuous normally distributed variables were represented as mean &#xb1; SD with a 95% confidence interval, while non-normal variables were summarized as median with 25 and 75 percentiles, and using the frequencies and percentage for categorical variables; a <italic>p-value</italic> &#x3c; 0.05 was considered statistically significant. To compare the means of normally distributed variables between groups, the student&#x2019;s t-test was performed, while the Mann-Whitney U test was used in non-normal variables. &#x3c7;<sup>2</sup> test was used to determine the distribution of categorical variables between groups. Pearson correlation was done to measure if there was any linear association between <italic>LGALS3 &#x26; 12</italic> gene expression. For MSP-PCR results, univariate analysis was conducted to determine the prognostic performance of each studied biomarker. In addition, Survival analysis was performed using a Kaplan-Meier test.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>
<italic>LGALS3 &#x26; 12</italic> expressions in AML patients</title>
<p>The profiling of <italic>LGALS3 &#x26; 12</italic> in both PB and BM of the AML patients showed differential expression as shown in (<xref ref-type="fig" rid="F2">Figures 2A,B</xref>). The <italic>LGALS3</italic> gene expression in PB and BM showed an association in the gene down-regulation in BM more than in PB (82.6% vs<italic>.</italic> 66.3% <italic>p-value</italic> &#x3d; 0.044). Where, <italic>LGALS12</italic> gene expression exhibited more downregulation in PB than in BM (63.3% vs<italic>.</italic> 43.8% <italic>p-value</italic> &#x3d; 0.012) (<xref ref-type="table" rid="T4">Table 4</xref>; <xref ref-type="fig" rid="F2">Figures 2C,D</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>
<italic>LGALS3 &#x26; 12</italic> expressions in AML patients: <bold>(A)</bold> Box plot showing differential expression of the <italic>LGALS3</italic> gene in PB &#x26; BM; the X-axis represents the <italic>LGALS3</italic> gene and the Y-axis shows BM and PB cohorts. <bold>(B)</bold> Box plot showing differential expression of the <italic>LGALS12</italic> gene in PB &#x26; BM; the X-axis represents the <italic>LGALS12</italic> gene and the Y-axis shows BM and PB cohorts. <bold>(C)</bold> Cluster bar showing association between the <italic>LGALS3</italic> gene expression in PB &#x26; BM; the X-axis represents the percent and the Y-axis shows the <italic>LGALS3</italic> gene expression in BM and PB cohorts. <bold>(D)</bold> Cluster bar showing association between <italic>LGALS12</italic> gene expression in PB &#x26; BM; the X-axis represents the percent and the Y-axis shows the <italic>LGALS12</italic> gene expression in BM and PB cohorts. <bold>(E)</bold> Scatter plot showing the correlation between <italic>LGALS3</italic>&#x26;<italic>12</italic> genes expression within BM. The X-axis represents the <italic>LGALS3</italic> gene expression and the Y-axis shows the <italic>LGALS12</italic> gene expression. <bold>(F)</bold> Scatter plot showing the correlation between <italic>LGALS3</italic>&#x26;<italic>12</italic> genes expression within PB; the X-axis represents the <italic>LGALS3</italic> gene expression and the Y-axis shows the <italic>LGALS12</italic> gene expression. Abbreviations: BM (Bone marrow); PB (Peripheral blood).</p>
</caption>
<graphic xlink:href="fgene-14-1122864-g002.tif"/>
</fig>
<table-wrap id="T4" position="float">
<label>TABLE 4</label>
<caption>
<p>Expression profile of <italic>LGALS3 &#x26; 12</italic> in both PB and BM of the AML patients.</p>
</caption>
<table>
<tbody valign="top">
<tr>
<td align="center">
<italic>
<bold>LGALS3</bold>
</italic>
</td>
<td align="center">
<bold>BM (n &#x3d; 46)</bold>
</td>
<td align="center">
<bold>PB (n &#x3d; 98)</bold>
</td>
<td align="center">
<italic>
<bold>p-value</bold>
</italic>
</td>
</tr>
<tr>
<td align="center">Upregulated</td>
<td align="center">8 (17.4%)</td>
<td align="center">33 (33.7%)</td>
<td rowspan="2" align="char" char=".">0.044</td>
</tr>
<tr>
<td align="center">Downregulated</td>
<td align="center">38 (82.6%)</td>
<td align="center">65 (66.3%)</td>
</tr>
<tr>
<td align="center">
<bold>
<italic>LGALS12</italic>
</bold>
</td>
<td align="center">
<bold>BM</bold> (<bold>n&#x3d; 73)</bold>
</td>
<td align="center">
<bold>PB</bold> (<bold>n&#x3d; 98)</bold>
</td>
<td align="left"/>
</tr>
<tr>
<td align="center">Upregulated</td>
<td align="center">41 (56.2%)</td>
<td align="center">36 (36.7%)</td>
<td rowspan="2" align="char" char=".">0.012</td>
</tr>
<tr>
<td align="center">Downregulated</td>
<td align="center">32 (43.8%)</td>
<td align="center">62 (63.3%)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<italic>p-value</italic> was performed using the &#x3c7;2 test.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>By studying the correlation between <italic>LGALS3 &#x26; 12</italic> genes expression in PB and BM we found that; no statistically significant correlation was found between both genes&#x2019; expression in BM (r &#x3d; &#x2212;0.036 and <italic>p-value</italic> &#x3d; 0.812). Conversely in the PB, a statistically significant moderate positive correlation was found (r &#x3d; 0.5 and <italic>p-value</italic> &#x3c; 0.001), <xref ref-type="fig" rid="F2">Figures 2E,F</xref>.</p>
</sec>
<sec id="s3-2">
<title>The methylation pattern of <italic>LGALS3 &#x26; 12</italic> gene promoter region</title>
<p>(MSP)-PCR for <italic>LGALS3</italic> exhibited that one (4%) out of 24 examined subjects were completely methylated (M), 5 (21%) were partially methylated (P) and 18 (75%) were unmethylated (U). While <italic>LGALS12</italic> promoter region showed that 5 (21%) were completely M out of 24 examined subjects, 12 (50%) were P and 7 (29%) were U.</p>
<p>Because most of the studied group by MSP-PCR exhibited an unmethylated pattern (75%) for the <italic>LGALS3</italic> promoter region, BGS as a validation step was carried out only for <italic>LGALS12</italic>.</p>
</sec>
<sec id="s3-3">
<title>Relation of MSP of <italic>LGALS 12</italic> with clinicolaboratory data</title>
<p>In this study, we compared all the clinical characteristics of patients with <italic>LGALS12</italic> methylation patterns (<xref ref-type="table" rid="T5">Table 5</xref>). The results showed that there was a positive association with the adverse genetic risk in P and M cases when compared with the U group (<italic>p-value</italic> &#x3d; 0.05 and 0.001, respectively). Furthermore, there was a positive risk for M with Odd Ratio (OR) &#x3d; 4 (<italic>p-value</italic> &#x3d; 0.01). Likewise, there was a positive association with the adverse genetic risk in M cases when compared with the P group (<italic>p-value</italic> &#x3c; 0.001). In addition, there was a positive risk for the M group with OR &#x3d; 2.00 (<italic>p-value</italic> &#x3d; 0.05).</p>
<table-wrap id="T5" position="float">
<label>TABLE 5</label>
<caption>
<p>Relation of the methylation pattern of galectin 12 and clinicolaboratory data of the studied group.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="3" colspan="2" align="center"/>
<th colspan="6" align="center">Galectin 12 methylation pattern</th>
<th colspan="6" align="center">Risk assessment</th>
</tr>
<tr>
<th rowspan="2" align="center">Un-methylated n &#x3d; 7</th>
<th rowspan="2" align="center">Partially methylated n &#x3d; 12</th>
<th rowspan="2" align="center">Completely methylated n &#x3d; 5</th>
<th colspan="3" align="center">
<italic>p-value</italic>
</th>
<th colspan="2" align="center">P &#x26; U</th>
<th colspan="2" align="center">M &#x26; U</th>
<th colspan="2" align="center">M &#x26; P</th>
</tr>
<tr>
<th align="center">P &#x26; U</th>
<th align="center">M &#x26; U</th>
<th align="center">M &#x26; P</th>
<th align="center">OR (95%C.I)</th>
<th align="center">
<italic>p-value</italic>
</th>
<th align="center">OR (95%C.I)</th>
<th align="center">
<italic>p-value</italic>
</th>
<th align="center">OR (95%C.I)</th>
<th align="center">
<italic>p-value</italic>
</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td colspan="2" align="center">
<bold>Age</bold>
</td>
<td align="center">40.4 &#xb1; 12.9</td>
<td align="center">39.0 &#xb1; 14.4</td>
<td align="center">37.2 &#xb1; 6.7</td>
<td align="char" char=".">0.8</td>
<td align="char" char=".">0.6</td>
<td align="char" char=".">0.3</td>
<td align="char" char="(">0.99 (0.92&#x2013;1.07)</td>
<td align="char" char=".">0.8</td>
<td align="center">0.97 (0.86&#x2013;1.09)</td>
<td align="char" char=".">0.6</td>
<td align="char" char="(">0.99 (0.96&#x2013;1.02)</td>
<td align="char" char=".">0.4</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>Sex</bold>
</td>
<td align="center">
<bold>Female</bold>
</td>
<td align="center">4 (57.1%)</td>
<td align="center">5 (41.7%)</td>
<td align="center">3 (60.0%)</td>
<td rowspan="2" align="char" char=".">0.08</td>
<td rowspan="2" align="char" char=".">0.6</td>
<td rowspan="2" align="char" char=".">0.07</td>
<td rowspan="2" align="char" char="(">1.87 (0.28&#x2013;12.31)</td>
<td rowspan="2" align="char" char=".">0.5</td>
<td rowspan="2" align="center">0.89 (0.09&#x2013;9.16)</td>
<td rowspan="2" align="char" char=".">0.9</td>
<td rowspan="2" align="char" char="(">0.48 (0.22&#x2013;1.01)</td>
<td rowspan="2" align="char" char=".">0.08</td>
</tr>
<tr>
<td align="center">
<bold>Male</bold>
</td>
<td align="center">3 (42.9%)</td>
<td align="center">7 (58.3%)</td>
<td align="center">2 (40.0%)</td>
</tr>
<tr>
<td colspan="2" align="center">
<bold>HB</bold>
</td>
<td align="center">6.8 &#xb1; 3.3</td>
<td align="center">8.4 &#xb1; 2.1</td>
<td align="center">6.1 &#xb1; 2.7</td>
<td align="char" char=".">0.4</td>
<td align="char" char=".">0.8</td>
<td align="char" char=".">0.2</td>
<td align="char" char="(">1.34 (0.74&#x2013;2.45)</td>
<td align="char" char=".">0.3</td>
<td align="center">0.91 (0.53&#x2013;1.55)</td>
<td align="char" char=".">0.7</td>
<td align="char" char="(">0.57 (0.41&#x2013;0.79)</td>
<td align="char" char=".">0.3</td>
</tr>
<tr>
<td colspan="2" align="center">
<bold>TLC</bold>
</td>
<td align="center">14.9 (6.7&#x2013;140.0)</td>
<td align="center">170.5 (94.1&#x2013;440.0)</td>
<td align="center">80.8 (3.6&#x2013;158.8)</td>
<td align="char" char=".">0.06</td>
<td align="char" char=".">0.8</td>
<td align="char" char=".">0.2</td>
<td align="char" char="(">1.02 (0.99&#x2013;1.04)</td>
<td align="char" char=".">0.2</td>
<td align="center">1.00 (0.99&#x2013;1.02)</td>
<td align="char" char=".">0.6</td>
<td align="char" char="(">0.99 (0.98&#x2013;0.99)</td>
<td align="char" char=".">0.3</td>
</tr>
<tr>
<td colspan="2" align="center">
<bold>PLT</bold>
</td>
<td align="center">19.0 (15.5&#x2013;104.3)</td>
<td align="center">29.0 (28.3&#x2013;35.5)</td>
<td align="center">17.0 (9.3&#x2013;36.0)</td>
<td align="char" char=".">0.2</td>
<td align="char" char=".">0.5</td>
<td align="char" char=".">0.2</td>
<td align="char" char="(">0.99 (0.94&#x2013;1.03)</td>
<td align="char" char=".">0.5</td>
<td align="center">0.98 (0.92&#x2013;1.04)</td>
<td align="char" char=".">0.4</td>
<td align="char" char="(">0.88 (0.83&#x2013;0.94)</td>
<td align="char" char=".">0.3</td>
</tr>
<tr>
<td colspan="2" align="center">
<bold>PB blast %</bold>
</td>
<td align="center">56.3 &#xb1; 32.7</td>
<td align="center">71.7 &#xb1; 22.3</td>
<td align="center">70.5 &#xb1; 34.1</td>
<td align="char" char=".">0.4</td>
<td align="char" char=".">0.7</td>
<td align="char" char=".">0.9</td>
<td align="char" char="(">1.03 (0.97&#x2013;1.08)</td>
<td align="char" char=".">0.3</td>
<td align="center">1.02 (0.97&#x2013;1.07)</td>
<td align="char" char=".">0.5</td>
<td align="char" char="(">1.00 (0.98&#x2013;1.02)</td>
<td align="char" char=".">0.8</td>
</tr>
<tr>
<td colspan="2" align="center">
<bold>BM blast %</bold>
</td>
<td align="center">77.8 &#xb1; 14.5</td>
<td align="center">70.2 &#xb1; 11.6</td>
<td align="center">61.0 &#xb1; 28.1</td>
<td align="char" char=".">0.4</td>
<td align="char" char=".">0.3</td>
<td align="char" char=".">0.6</td>
<td align="char" char="(">0.94 (0.83&#x2013;1.07)</td>
<td align="char" char=".">0.4</td>
<td align="center">0.96 (0.89&#x2013;1.04)</td>
<td align="char" char=".">0.3</td>
<td align="char" char="(">0.97 (0.95&#x2013;1.00)</td>
<td align="char" char=".">0.06</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>
<italic>FLT3-ITD</italic>
</bold>
</td>
<td align="center">
<bold>wild</bold>
</td>
<td align="center">6 (85.7%)</td>
<td align="center">9 (75.0%)</td>
<td align="center">4 (80.0%)</td>
<td rowspan="2" align="char" char=".">0.07</td>
<td rowspan="2" align="char" char=".">0.2</td>
<td rowspan="2" align="char" char=".">0.2</td>
<td rowspan="2" align="char" char="(">2.00 (0.17&#x2013;24.07)</td>
<td rowspan="2" align="char" char=".">0.6</td>
<td rowspan="2" align="center">1.50 (0.07&#x2013;31.57)</td>
<td rowspan="2" align="char" char=".">0.8</td>
<td rowspan="2" align="char" char="(">0.75 (0.30&#x2013;1.85)</td>
<td rowspan="2" align="char" char=".">0.5</td>
</tr>
<tr>
<td align="center">
<bold>Mutant</bold>
</td>
<td align="center">1 (14.3%)</td>
<td align="center">3 (25.0%)</td>
<td align="center">1 (20.0%)</td>
</tr>
<tr>
<td rowspan="3" align="center">
<bold>Genetic risk</bold>
</td>
<td align="center">
<bold>Normal</bold>
</td>
<td align="center">4 (57.1%)</td>
<td align="center">7 (58.3%)</td>
<td align="center">2 (40.0%)</td>
<td align="char" char=".">0.8</td>
<td align="char" char=".">0.06</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">1.75 (0.51&#x2013;5.98)</td>
<td align="char" char=".">0.4</td>
<td align="center">0.57 (0.31&#x2013;1.06)</td>
<td align="char" char=".">0.07</td>
<td align="char" char="(">0.29 (0.16&#x2013;0.50)</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
</tr>
<tr>
<td align="center">
<bold>Intermediate</bold>
</td>
<td align="center">3 (42.9%)</td>
<td align="center">4 (33.3%)</td>
<td align="center">1 (20.0%)</td>
<td align="char" char=".">0.08</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char=".">0.05&#x2a;</td>
<td align="char" char="(">1.33 (0.30&#x2013;5.96)</td>
<td align="char" char=".">0.7</td>
<td align="center">0.33 (0.15&#x2013;0.74)</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">0.25 (0.12&#x2013;0.54)</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
</tr>
<tr>
<td align="center">
<bold>Adverse</bold>
</td>
<td align="center">0 (0.0%)</td>
<td align="center">1 (8.3%)</td>
<td align="center">2 (40.0%)</td>
<td align="char" char=".">0.05&#x2a;</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
<td align="center">&#x2012;</td>
<td align="center">&#x2012;</td>
<td align="center">4.00 (1.34&#x2013;11.96)</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">2.00 (0.86&#x2013;4.67)</td>
<td align="char" char=".">0.05&#x2a;</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>Hepatomegaly</bold>
</td>
<td align="center">
<bold>No</bold>
</td>
<td align="center">6 (85.7%)</td>
<td align="center">12 (100.0%)</td>
<td align="center">3 (60.0%)</td>
<td rowspan="2" align="char" char=".">0.07</td>
<td rowspan="2" align="char" char=".">0.01&#x2a;</td>
<td rowspan="2" align="char" char=".">0.01&#x2a;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">4.00 (1.50&#x2013;10.66)</td>
<td rowspan="2" align="char" char=".">0.01&#x2a;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
</tr>
<tr>
<td align="center">
<bold>Yes</bold>
</td>
<td align="center">1 (14.3%)</td>
<td align="center">0 (0.0%)</td>
<td align="center">2 (40.0%)</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>Splenomegaly</bold>
</td>
<td align="center">
<bold>No</bold>
</td>
<td align="center">6 (85.7%)</td>
<td align="center">12 (100.0%)</td>
<td align="center">3 (60.0%)</td>
<td rowspan="2" align="char" char=".">0.07</td>
<td rowspan="2" align="char" char=".">0.01&#x2a;</td>
<td rowspan="2" align="char" char=".">0.01&#x2a;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">4.00 (1.50&#x2013;10.66)</td>
<td rowspan="2" align="char" char=".">0.01&#x2a;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
</tr>
<tr>
<td align="center">
<bold>Yes</bold>
</td>
<td align="center">1 (14.3%)</td>
<td align="center">0 (0.0%)</td>
<td align="center">2 (40.0%)</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>LNs</bold>
</td>
<td align="center">
<bold>No</bold>
</td>
<td align="center">7 (100.0%)</td>
<td align="center">10 (83.3%)</td>
<td align="center">2 (40.0%)</td>
<td rowspan="2" align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
<td rowspan="2" align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
<td rowspan="2" align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="center">&#x2012;</td>
<td rowspan="2" align="char" char="(">7.50 (3.27&#x2013;17.19)</td>
<td rowspan="2" align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
</tr>
<tr>
<td align="center">
<bold>Yes</bold>
</td>
<td align="center">0 (0.0%)</td>
<td align="center">2 (16.7%)</td>
<td align="center">3 (60.0%)</td>
</tr>
<tr>
<td rowspan="3" align="center">
<bold>IPT</bold>
</td>
<td align="center">
<bold>Mono</bold>
</td>
<td align="center">4 (57.1%)</td>
<td align="center">7 (58.3%)</td>
<td align="center">2 (40.0%)</td>
<td align="char" char=".">0.8</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">1.75 (0.51&#x2013;5.98)</td>
<td align="char" char=".">0.4</td>
<td align="center">0.50 (0.27&#x2013;0.91)</td>
<td align="char" char=".">0.02&#x2a;</td>
<td align="char" char="(">0.29 (0.16&#x2013;0.50)</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
</tr>
<tr>
<td align="center">
<bold>Myelo</bold>
</td>
<td align="center">2 (28.6%)</td>
<td align="center">4 (33.3%)</td>
<td align="center">2 (40.0%)</td>
<td align="char" char=".">0.3</td>
<td align="char" char=".">0.2</td>
<td align="char" char=".">0.06</td>
<td align="char" char="(">2.00 (0.37&#x2013;10.92)</td>
<td align="char" char=".">0.4</td>
<td align="center">1.00 (0.50&#x2013;2.00)</td>
<td align="char" char=".">0.9</td>
<td align="char" char="(">0.50 (0.27&#x2013;0.91)</td>
<td align="char" char=".">0.07</td>
</tr>
<tr>
<td align="center">
<bold>Myelomono</bold>
</td>
<td align="center">1 (14.3%)</td>
<td align="center">1 (8.3%)</td>
<td align="center">1 (20.0%)</td>
<td align="char" char=".">0.1</td>
<td align="char" char=".">0.2</td>
<td align="char" char=".">0.05&#x2a;</td>
<td align="char" char="(">1.00 (0.06&#x2013;15.99)</td>
<td align="char" char=".">0.9</td>
<td align="center">1.00 (0.38&#x2013;2.66)</td>
<td align="char" char=".">0.9</td>
<td align="char" char="(">1.00 (0.38&#x2013;2.66)</td>
<td align="char" char=".">0.9</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>CR</bold>
</td>
<td align="center">
<bold>No</bold>
</td>
<td align="center">5 (71.4%)</td>
<td align="center">8 (66.7%)</td>
<td align="center">4 (80.0%)</td>
<td rowspan="2" align="char" char=".">0.3</td>
<td rowspan="2" align="char" char=".">0.1</td>
<td rowspan="2" align="char" char=".">0.08</td>
<td rowspan="2" align="char" char="(">1.25 (0.16&#x2013;9.54)</td>
<td rowspan="2" align="char" char=".">0.8</td>
<td rowspan="2" align="center">0.63 (0.24&#x2013;1.64</td>
<td rowspan="2" align="char" char=".">0.3</td>
<td rowspan="2" align="char" char="(">0.50 (0.21&#x2013;1.21)</td>
<td rowspan="2" align="char" char=".">0.1</td>
</tr>
<tr>
<td align="center">
<bold>Yes</bold>
</td>
<td align="center">2 (28.6%)</td>
<td align="center">4 (33.3%)</td>
<td align="center">1 (20.0%)</td>
</tr>
<tr>
<td rowspan="2" align="center">
<bold>Death</bold>
</td>
<td align="center">
<bold>No</bold>
</td>
<td align="center">3 (42.9%)</td>
<td align="center">6 (50.0%)</td>
<td align="center">2 (40.0%)</td>
<td rowspan="2" align="char" char=".">0.2</td>
<td rowspan="2" align="char" char=".">0.6</td>
<td rowspan="2" align="char" char=".">0.04&#x2a;</td>
<td rowspan="2" align="char" char="(">0.75 (0.11&#x2013;4.90)</td>
<td rowspan="2" align="char" char=".">0.8</td>
<td rowspan="2" align="center">1.12 (0.49&#x2013;2.57)</td>
<td rowspan="2" align="char" char=".">0.8</td>
<td rowspan="2" align="char" char="(">1.50 (0.71&#x2013;3.17)</td>
<td rowspan="2" align="char" char=".">0.3</td>
</tr>
<tr>
<td align="center">
<bold>Yes</bold>
</td>
<td align="center">4 (57.1%)</td>
<td align="center">6 (50.0%)</td>
<td align="center">3 (60.0%)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<italic>p-value</italic> was performed using &#x3c7;2 test, (&#x2a;) <italic>p-value</italic> &#x3c; 0.05 is significant, (&#x2a;&#x2a;) <italic>p-value</italic> &#x3c; 0.001 is highly significant. Abbreviations: M (methylated); P (partially methylated), U (unmethylated), HB (hemoglobin); TLC (Total leukocyte count); PLT (platelets); BM (Bone marrow); PB (Peripheral blood); LNs (lymph nodes), IPT (immunophenotyping); CR (complete remission).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>On the other hand, there was a negative association with intermediate genetic risk in M cases when compared with the U group (<italic>p-value</italic> &#x3d; 0.01) with protection from the M with OR &#x3d; 0.33 (<italic>p-value</italic> &#x3d; 0.01). Similar, results were given when the M group was compared with the P group (<italic>p-value</italic> &#x3d; 0.05), OR &#x3d; 0.25 (<italic>p-value</italic> &#x3c; 0.001).</p>
<p>Regarding the hepatomegaly and splenomegaly associations, the results showed that there was a positive association with M in the cases that had organomegaly of the liver and spleen when compared with the U and/or P groups (<italic>p-value</italic> &#x3d; 0.01 and 0.01, respectively).</p>
<p>In addition, the results showed that there was a positive association with lymph nodes (LNs) involvement in P cases and M cases when compared with the U group (<italic>p-value</italic> &#x3d; 0.001 and 0.001, respectively). Likewise, there was a positive association with lymph node-positive in M cases when compared with the P group (<italic>p-value</italic> <bold>
<italic>&#x3c;</italic>
</bold> 0.001). Moreover, there was a positive risk for M with OR &#x3d; 7.50 (<italic>p-value</italic> &#x3d; 0.01).</p>
<p>Regarding the immunophenotyping (IPT), the results showed that there was a positive association with the myelomono IPT in M cases when compared with the P group (<italic>p-value &#x3d;</italic> 0.05). We found that there was a negative association with mono IPT in M cases when compared with the U group (<italic>p-value</italic> &#x3d; 0.01) with protection from the M (OR &#x3d; 0.50 (<italic>p-value &#x3d;</italic> 0.02)). Similar results were given when the M group was compared with the P group, OR &#x3d; 0.29 (<italic>p-value</italic> <bold>
<italic>&#x3c;</italic>
</bold> 0.001).</p>
<p>Besides, the results showed a positive association with the mortality rate in M cases when compared with the P group (<italic>p-value &#x3d;</italic> 0.04).</p>
</sec>
<sec id="s3-4">
<title>Impact of methylation pattern of <italic>LGALS12</italic> on its gene expression and patients&#x2019; overall survival</title>
<p>The association results showed a positive association between <italic>LGALS-12</italic> downregulation and an increasing incidence of methylation patterns. <italic>LGALS-12</italic> was downregulated in P or M cases when compared to U cases in PB samples (<italic>p-value &#x3d;</italic> 0.03 and 0.01, respectively) and BM samples (<italic>p-value &#x3d;</italic> 0.003 and 0.01, respectively). Moreover <italic>LGALS-12</italic> was downregulated in M cases when compared to P cases in PB samples (<italic>p-value &#x3d;</italic> 0.01) and BM samples (<italic>p-value &#x3d;</italic> 0.01), (<xref ref-type="table" rid="T6">Table 6</xref>; <xref ref-type="fig" rid="F3">Figure 3</xref>).</p>
<table-wrap id="T6" position="float">
<label>TABLE 6</label>
<caption>
<p>The association between the methylation pattern of <italic>LGALS12</italic> and its gene expression.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="3" align="center">
<italic>LGALS12</italic> expression</th>
<th colspan="6" align="center">
<italic>LGALS12</italic> methylation pattern</th>
<th colspan="6" align="center">Risk assessment</th>
</tr>
<tr>
<th rowspan="2" align="center">U (n &#x3d; 7)</th>
<th rowspan="2" align="center">P (n &#x3d; 12)</th>
<th rowspan="2" align="center">M (n &#x3d; 5)</th>
<th colspan="3" align="center">
<italic>p- value</italic>
</th>
<th colspan="2" align="center">P &#x26; U</th>
<th colspan="2" align="center">M &#x26; U</th>
<th colspan="2" align="center">M &#x26; P</th>
</tr>
<tr>
<th align="center">P &#x26; U</th>
<th align="center">M &#x26; U</th>
<th align="center">M &#x26; P</th>
<th align="center">OR (95%C.I)</th>
<th align="center">
<italic>p- value</italic>
</th>
<th align="center">OR (95%C.I)</th>
<th align="center">
<italic>p- value</italic>
</th>
<th align="center">OR (95%C.I)</th>
<th align="center">
<italic>p- value</italic>
</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">
<bold>PB</bold>
</td>
<td align="char" char="(">4.6 (1.8&#x2013;36.5)</td>
<td align="char" char="(">1.4 (0.5&#x2013;4.5)</td>
<td align="char" char="(">0.4 (0.2&#x2013;1.1)</td>
<td align="char" char=".">0.03&#x2a;</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">0.88 (0.78&#x2013;0.99)</td>
<td align="char" char=".">0.04&#x2a;</td>
<td align="char" char="(">0.03 (0.001&#x2013;0.19)</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
<td align="char" char="(">0.38 (0.23&#x2013;0.65)</td>
<td align="char" char=".">&#x3c;0.001&#x2a;&#x2a;</td>
</tr>
<tr>
<td align="center">
<bold>BM</bold>
</td>
<td align="char" char="(">10.2 (9.6&#x2013;13.5)</td>
<td align="char" char="(">2.4 (1.3&#x2013;9.8)</td>
<td align="char" char="(">0.8 (0.7&#x2013;3.7)</td>
<td align="char" char=".">0.03&#x2a;</td>
<td align="char" char=".">0.003&#x2a;&#x2a;</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">0.76 (0.68&#x2013;0.86)</td>
<td align="char" char=".">0.04&#x2a;</td>
<td align="char" char="(">0.78 (0.54&#x2013;0.92)</td>
<td align="char" char=".">0.01&#x2a;</td>
<td align="char" char="(">0.81 (0.69&#x2013;0.94)</td>
<td align="char" char=".">0.01&#x2a;</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<italic>p-value</italic> was performed using &#x3c7;2 test, (&#x2a;) <italic>p-value</italic> &#x3c; 0.05 is significant, (&#x2a;&#x2a;) <italic>p-value</italic> &#x3c; 0.001 is highly significant. Abbreviations: M (methylated); P (partially methylated), U (unmethylated), BM (Bone marrow); PB (Peripheral blood); BM (Bone marrow); PB (Peripheral blood).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Log2 fold change of the <italic>LGALS12</italic> gene expression associated with the methylation pattern of its promoter region. Abbreviations: M (methylated); P (partially methylated), U (unmethylated), BM (Bone marrow); PB (Peripheral blood). <bold>(A)</bold> Box plot showing Log2 fold change of the <italic>LGALS12</italic> gene expression associated with the methylation pattern of its promoter region in PB; the X-axis represents the methylation pattern of <italic>LGALS12</italic> gene and the Y-axis shows Log2 fold change of the <italic>LGALS12</italic> gene expression in PB cohort. <bold>(B)</bold> Box plot showing Log2 fold change of the <italic>LGALS12</italic> gene expression associated with the methylation pattern of its promoter region in BM; the X-axis represents the methylation pattern of <italic>LGALS12</italic> gene and the Y-axis shows Log2 fold change of the <italic>LGALS12</italic> gene expression in BM cohort.</p>
</caption>
<graphic xlink:href="fgene-14-1122864-g003.tif"/>
</fig>
<p>The linear regression analysis results confirmed the abovementioned association results. As the OR of the P or M cases was compared with U cases in PB samples &#x3d; 0.88 (<italic>p-value &#x3d;</italic> 0.04), 0.03 (<italic>p-value &#x3c;</italic> 0.001) and OR of BM samples &#x3d; 0.76 (<italic>p-value &#x3d;</italic> 0.04), and 0.78 (<italic>p-value &#x3d;</italic> 0.01), respectively. In addition, OR of M cases was compared with P cases in PB samples &#x3d; 0.38 (<italic>p-value &#x3c;</italic> 0.001) and BM samples &#x3d; 0.81 (<italic>p-value &#x3d;</italic> 0.01), <xref ref-type="table" rid="T6">Table 6</xref>.</p>
<p>Follow-up of cases was done for 20&#xa0;months. The median follow-up time was 3.75&#xa0;months (ranging from 0.07 to 19.28&#xa0;months). The OS of AML patients was measured from the date of diagnosis until the date of death or censoring for patients alive at the last follow-up. Studying the relation of OS and <italic>LGALS-12</italic> methylation pattern showed a very close time to death in M cases when compared with U cases (<italic>p-value</italic> &#x3c; 0.001). The same results were given, in the case of M group compared with P (<italic>p-value</italic> &#x3c; 0.001), <xref ref-type="fig" rid="F4">Figure 4</xref>.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Overall survival (OS) and its relation to methylation pattern of <italic>LGALS12</italic>. Abbreviations: M (methylated); P (partially methylated), U (unmethylated), BM (Bone marrow); PB (Peripheral blood).</p>
</caption>
<graphic xlink:href="fgene-14-1122864-g004.tif"/>
</fig>
</sec>
<sec id="s3-5">
<title>Galectin-12 methylated CpG islands</title>
<p>The total number of CpG sites analyzed was 308 in 28 AML patients (<xref ref-type="fig" rid="F5">Figure 5</xref>). Patients were divided based on their expression pattern into 2 groups. In the first non-expressed group (23 patients), the total number of CpG sites studied in the non-expressed group was 253 mostly methylated 203; the unmethylated sites were only 50/353 (19.8%). Second, expressed group (five patients), the total number in this expressed group was 55 mostly unmethylated 39/55 (70.1%), and 16 sites were methylated.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Bisulfite Genomic Sequencing of the promoter region of <italic>LGALS12</italic>. Methylation status of CpGs of Gelactin-12 promoter. CpGs are shown as either black (methylated) or white (unmethylated) circles and are numbered by Roman numerals.</p>
</caption>
<graphic xlink:href="fgene-14-1122864-g005.tif"/>
</fig>
<p>Analysis of methylation pattern per patient revealed that:</p>
<p>In the non-expressed group (23 patients) five patients had all eleven (11/11) CpG sites methylated. Three patients had 10/11 CpG sites methylated. Two patients had 9/11 sites methylated. Nine patients had 8/11 CpG sites methylated and four patients had 7/11 CpG sites methylated.</p>
<p>In the expressed group (five patients) one patient had 2/11 CpG sites methylated, two patients had 3/11 CpG sites methylated and two patients had 4/11 CpG sites methylated. None of the studied AML patients showed 5/11 or 6/11 methylated sites.</p>
<p>Analysis of methylation pattern per CpG locus revealed that:</p>
<p>In the unexpressed group; CpG number 1 9/23 were unmethylated, CpG number 2 &#x26;5 8/23 were unmethylated, CpG number 3 &#x26; 6 6/23 were unmethylated, CpG number. 4 5/23 were unmethylated, CpG number 7&#x26; 10 1/23 were unmethylated, CpG number 8 4/23 were unmethylated and CpG number nine all were methylated. CpG number 11 2/23 were unmethylated.</p>
<p>In the expressed group; CpG number 1, 5, 7 &#x26; 8 were all unmethylated, CpG number 4 &#x26; 6 were unmethylated in 4/5, CpG number 2 &#x26;11 were unmethylated in 3/5, CpG number 9&#x26;10 were unmethylated in 2/5 and CpG number 3 was unmethylated in 1/5.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>The stimulator to leukemogenesis is a result of coordinated alterations in epigenetic regulation including methylation. Both gene-specific and global methylation patterns could predict outcomes in patients in AML (<xref ref-type="bibr" rid="B15">Deneberg et al., 2010</xref>). Previous studies showed that abnormal expression of some galectins correlates with tumor growth, cell migration, invasion, tumor aggressiveness, metastasis, recurrence, and poor prognosis in various cancers including leukemia (<xref ref-type="bibr" rid="B3">Ahmed et al., 2009</xref>; <xref ref-type="bibr" rid="B4">Bacigalupo et al., 2013</xref>; <xref ref-type="bibr" rid="B37">Ruvolo, 2019</xref>).</p>
<p>In the present study, despite the fact there was a statistically significant association between <italic>LGALS3 &#x26;12</italic> genes expression in both PB and BM, there was no significant correlation between the expression in BM &#x26; PB of these two galectins in our previous study (<xref ref-type="bibr" rid="B1">Abdelfattah et al., 2021</xref>). This novelty could be due to the relatively large sample size studied here. In the current study, <italic>LGALS3 &#x26; 12</italic> were both downregulated (66.3% &#x26; 63.3% respectively) in PB, and <italic>LGALS3</italic> was even more downregulated in the BM (82.6%) while <italic>LGALS12</italic> was less downregulated in the BM (43.8%). This could possibly be attributed to the fact that its expression in the BM is not only in leukocytes but also is in adipocytes (<xref ref-type="bibr" rid="B43">Xue et al., 2016</xref>). Galectin-12 was found to be preferentially expressed by human adipocytes and functions as an intrinsic negative regulator of lipolysis. In addition to its important function as an intracellular regulator of sebocyte proliferation (<xref ref-type="bibr" rid="B41">Tsao et al., 2022</xref>).</p>
<p>The study shows that, <italic>LGALS3</italic> gene expression in PB and BM was mostly downregulated but contrary to our findings, <xref ref-type="bibr" rid="B11">Cheng et al. (2013)</xref> demonstrated that a higher bone marrow <italic>LGALS3</italic> protein expression was an independent unfavorable prognostic factor for OS in patients with AML in Taiwan. This difference could be attributed to racial disparity and ethnic variation (<xref ref-type="bibr" rid="B5">Balan et al., 2008</xref>). Unlike our finding <xref ref-type="bibr" rid="B36">Ruebel et al. (2005)</xref> found that <italic>LGALS3</italic> gene expression is decreased upon methylation in its promoter region in some pituitary tumors, however, their study was only restricted to cell lines for different types of cancer.</p>
<p>In fact, galectin-3 functionality depends on its subcellular localization, whether nuclear, cytoplasmic, cell surface, or circulating. Whereby cytoplasmic and circulating galectin-3 provide the most cell growth promotion (<xref ref-type="bibr" rid="B31">Newlaczyl and Yu, 2011</xref>). Ruvolo (2019) elaborated on the survival advantage induced by galectin-3 in the leukemic niche. He &#x26; Farhad <italic>et al.</italic> (2018) showed the role of MSC-derived galectin 3 in the AML microenvironment (<xref ref-type="bibr" rid="B19">Farhad et al., 2018</xref>; <xref ref-type="bibr" rid="B37">Ruvolo, 2019</xref>).</p>
<p>Herein, this study examined the methylation pattern of galectin-3 using MSP-PCR which resulted in most of the cases being unmethylated (18/24), six cases were partially methylated and only one case was completely methylated, despite the predominant low expression pattern of <italic>LGALS3</italic>. The role of <italic>LGALS3</italic> expression pattern in carcinogenesis was extensively investigated in previous studies (<xref ref-type="bibr" rid="B16">Ebrahim et al., 2014</xref>). Silencing of galectin-3 expression by methylation of its promoter was associated with early stages of prostate cancer (<xref ref-type="bibr" rid="B14">Cummings et al., 2022</xref>). Our study outcome however did not give the same results in AML adult patients, unless, methylated CpG sites might be present outside the studied region.</p>
<p>Regarding <italic>LGALS12</italic>, we analyzed the methylation pattern of its promoter region by 2 methods. In the first cohort (MSP-PCR), most of our cases 12/24 (50%) were in the P category. This could be attributed to contamination by normal cells as reported previously (<xref ref-type="bibr" rid="B35">Quesnel et al., 1998</xref>), or by the fact that methylation in the CpG islands was not consistent in all AML samples (<xref ref-type="bibr" rid="B20">Galm et al., 2005</xref>). Our validation cohort supports the second notion since the percentage of methylation in the 11 CpG sites varied among patients ranging from 100% (11/11) to 7/11 but not less than seven sites methylation in patients who did not express galectin-12. At least seven CpG loci out of the eleven were methylated in the non-expressed group. In addition, we identified four CpG sites (1, 5, 7&#x26; 8) in the promoter region of galectin-12. All four must be unmethylated so that <italic>LGALS12</italic> expression can be induced. To the authors&#x2019; knowledge; it is the first time to report such novelty in AML patients, an assumption that needs to be proven.</p>
<p>Regarding the clinical data of the patients, in the same institution, a previous study showed a significant association between splenomegaly and a relatively higher <italic>LGALS3</italic> expression (<xref ref-type="bibr" rid="B1">Abdelfattah et al., 2021</xref>). Galectin-3 is known to be a powerful chemoattractant for monocytes, macrophages, and dendritic cells (<xref ref-type="bibr" rid="B38">Sano et al., 2000</xref>; <xref ref-type="bibr" rid="B24">Hsu et al., 2009</xref>). Thus we can postulate that its relatively higher expression in the bone marrow might attract the cells in numerous numbers which will be successfully drained into the spleen causing its expansion.</p>
<p>Here, our results showed a significant association between the promoter methylation status of galectin-12 &#x26; splenomegaly, hepatomegaly and lymphadenopathy. All cases with lymph nodes (LNs) enlarged were methylated 5/5 either partially or completely methylated (<italic>p-value</italic> &#x3c; 0.001) for each. None of LNs enlargement was in the unmethylated group (<italic>p-value</italic> &#x3c; 0.001). Higher expression of <italic>LGALS12</italic> was shown to cause cell cycle arrest and apoptosis; probably causing shrinkage of the spleen and lymph nodes (<xref ref-type="bibr" rid="B44">Yang et al., 2001</xref>). Interestingly all 3 cases in the adverse genetic risk group were either partially (one case) or completely methylated (2 cases) in galectin-12 (<italic>p-value</italic> &#x3c; 0.001) while none were in the unmethylated group. Also, it is in accordance with Farzaneh <italic>et al</italic> (2022), they showed that methylation as a biological process influences gene expression by affecting the promoter activity in colorectal cancer (<xref ref-type="bibr" rid="B21">Ghadiri Moghaddam et al., 2022</xref>). We found <italic>LGALS12</italic> expression in the bone marrow only is border line significantly associated with AML-M4 compared to the other AML subtypes (<italic>p-value</italic> &#x3d; 0.05) (data not shown), however, our methylation analysis showed a statistically significant association between complete methylation and unmethylation in the mono subtype only (<italic>p-value</italic> &#x3d; 0.01). Moreover, mortality rate was increased in the methylated group. This finding is consistent with our previous finding that, patients with higher <italic>LGALS12</italic> expression have the better overall survival (<xref ref-type="bibr" rid="B17">El Leithy et al., 2015</xref>).</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>Conclusion</title>
<p>The methylation pattern of the promoter region affects the expression only in galectin-12 but not in galectin-3. Our findings identify that hypermethylation of galectin-12 promoter is a common event in <italic>de novo</italic> adult AML. The abnormally hypomethylated and over-expressed galectin-12 cases had a relatively overall survival advantage. Galectin-3 downregulation is not a consequence of promoter methylation. However, intergenic and out of studied fragment DNA methylation cannot be excluded.</p>
</sec>
<sec id="s6">
<title>Recommendation and future prospective</title>
<p>Galectin-12 promoter hypomethylation and relative over-expression showed an overall survival advantage in AML patients. The present study findings confirmation in other cohorts in the same and different populations is recommended. Consequently, future research for specifically targeting a hypomethylating therapy agent for methylated galectin-12 promoter region could be an advance in the treatment of AML. Furthermore, the prospective evaluation of the methylation status of the galectin-12 promoter region in AML patients will be highly recommended for adjusting the patient treatment protocol.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s7">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/supplementary material.</p>
</sec>
<sec id="s8">
<title>Ethics statement</title>
<p>The studies involving human participants were reviewed and approved by Written informed consents were obtained from the patients or their legal guardians, and this study was approved by the ethical committee of NCI, CU, Egypt, and was following the 2011 Declaration of Helsinki (IRP Approval No. 201902012.4). The patients/participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s9">
<title>Author contributions</title>
<p>Conceptualization: MA and AE; Data curation: MA, AE, RE, RN, MK, and AA; Formal Analysis: MA, AE, RE, RN, MK, and AA;Funding acquisition: AA, AB, MA, MA, RE, MA and AE; Methodology: AE, RE, RN, MK, and MA; Software:RE, HG, AA, and AE; Supervision: MA, AE, and AA; Visualization: AE; Writing&#x2013;review and editing: MA, AA, and AE. All authors approved the final version of the manuscript.</p>
</sec>
<ack>
<p>The authors thank Omar Ellethy, MSc. Neuroscience, VU-Amsterdam-RU Nijmegen, for his support during manuscript final revision.</p>
</ack>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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