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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1108852</article-id>
<article-id pub-id-type="doi">10.3389/fgene.2023.1108852</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Case Report</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The clinical phenotype with gastrostomy and abdominal wall infection in a pediatric patient with Takenouchi-Kosaki syndrome due to a heterozygous c.191A &#x3e; G (p.Tyr64Cys) variant in <italic>CDC42</italic>: a case report</article-title>
<alt-title alt-title-type="left-running-head">Szczawi&#x144;ska-Pop&#x142;onyk et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1108852">10.3389/fgene.2023.1108852</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Szczawi&#x144;ska-Pop&#x142;onyk</surname>
<given-names>Aleksandra</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/860525/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pop&#x142;onyk</surname>
<given-names>Natalia</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1715740/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Badura-Stronka</surname>
<given-names>Magdalena</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Juengling</surname>
<given-names>Jerome</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Huhn</surname>
<given-names>Kerstin</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2243086/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Biskup</surname>
<given-names>Saskia</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bancerz</surname>
<given-names>Bart&#x142;omiej</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Walkowiak</surname>
<given-names>Jaros&#x142;aw</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2243861/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Pediatric Pneumonology</institution>, <institution>Allergy and Clinical Immunology</institution>, <institution>Institute of Pediatrics</institution>, <institution>Karol Jonscher University Hospital</institution>, <institution>Pozna&#x144; University of Medical Sciences</institution>, <addr-line>Pozna&#x144;</addr-line>, <country>Poland</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Student Scientific Society</institution>, Pozna&#x144; University of Medical Sciences, <addr-line>Pozna&#x144;</addr-line>, <country>Poland</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Centers for Medical Genetics Genesis</institution>, <addr-line>Pozna&#x144;</addr-line>, <country>Poland</country>
</aff>
<aff id="aff4">
<sup>4</sup>Chair and Department of Medical Genetics, <institution>Pozna&#x144; University of Medical Sciences</institution>, <addr-line>Pozna&#x144;</addr-line>, <country>Poland</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Zentrum Fur Humangenetik T&#xfc;bingen</institution>, <addr-line>T&#xfc;bingen</addr-line>, <country>Germany</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>CeGaT GmbH</institution>, <addr-line>T&#xfc;bingen</addr-line>, <country>Germany</country>
</aff>
<aff id="aff7">
<sup>7</sup>Department of Pediatric Gastroenterology and Metabolic Diseases, Institute of Pediatrics,<institution> Karol Jonscher University Hospital, Pozna&#x144; University of Medical Sciences</institution>, <addr-line>Pozna&#x144;</addr-line>, <country>Poland</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/454793/overview">Xiu-An Yang</ext-link>, Chengde Medical University, China</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1706079/overview">Simona Coppola</ext-link>, National Institute of Health (ISS), Italy</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/878867/overview">Claudia Santoro</ext-link>, University of Campania Luigi Vanvitelli, Italy</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Aleksandra Szczawi&#x144;ska-Pop&#x142;onyk, <email>aszczawinska@ump.edu.pl</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>06</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1108852</elocation-id>
<history>
<date date-type="received">
<day>26</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>23</day>
<month>05</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Szczawi&#x144;ska-Pop&#x142;onyk, Pop&#x142;onyk, Badura-Stronka, Juengling, Huhn, Biskup, Bancerz and Walkowiak.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Szczawi&#x144;ska-Pop&#x142;onyk, Pop&#x142;onyk, Badura-Stronka, Juengling, Huhn, Biskup, Bancerz and Walkowiak</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The <italic>CDC42</italic> (cell division cycle homolog 42) gene product, Cdc42 belongs to the Rho GTPase family which plays a pivotal role in the regulation of multiple cellular functions, including cell cycle progression, motility, migration, proliferation, transcription activation, and reactive oxygen species production. The Cdc42 molecule controls various tissue-specific functional pathways underpinning organogenesis as well as developmental integration of the hematopoietic and immune systems. Heterozygous c.191A&#x3e;G (p.Tyr64Cys) pathogenic variants in <italic>CDC42</italic> cause Takenouchi-Kosaki syndrome characterized by a spectrum of phenotypic features comprising psychomotor developmental delay, sensorineural hearing loss, growth retardation, facial dysmorphism, cardiovascular and urinary tract malformations, camptodactyly, accompanied by thrombocytopenia and immunodeficiency of variable degree. Herein, we report a pediatric patient with the Takenouchi-Kosaki syndrome due to a heterozygous p.Tyr64Cys variant in <italic>CDC42</italic> manifesting as a congenital malformation complex accompanied by macrothrombocytopenia, poor specific antibody response, B and T cell immunodeficiency, and low serum immunoglobulin A level. We also suggst that feeding disorders, malnutrition, and a gastrointestinal infection could be a part of the phenotypic characteristics of Takenouchi-Kosaki syndrome supporting the hypothesis of immune dysregulation and systemic inflammation occurring in the p.Tyr64Cys variant in <italic>CDC42.</italic>
</p>
</abstract>
<kwd-group>
<kwd>Takenouchi-Kosaki syndrome</kwd>
<kwd>Cdc42</kwd>
<kwd>c.191A&#x3e;G variant</kwd>
<kwd>antibody deficiency</kwd>
<kwd>macrothrombocytopenia</kwd>
<kwd>neurodevelopmental delay</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Genetics of Common and Rare Diseases</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>The <italic>Cell Division Cycle 42</italic> (<italic>CDC42</italic>) gene encodes a Cdc42 molecule which is a member of the family of Rho GTPases belonging to the Ras superfamily of small GTPases. The Rho-family GTPases are characterized by a multiplicity of physiological functions influencing crucial developmental signals in cell cycle regulation. These biological processes include the establishing and controlling of the cell actin cytoskeleton, vesicle trafficking, cell polarity, proliferation, motility and migration, transcription activation, reactive oxygen species production, and malignant transformation (<xref ref-type="bibr" rid="B38">Ueyama, 2019</xref>; <xref ref-type="bibr" rid="B12">Lauri et al., 2021</xref>). The Cdc42 protein plays a fundamental role in cell biology and is implicated in a wide array of physiologically pivotal, tissue-specific activities. Cdc42-dependent cytoskeletal reorganization and cell polarity are essential for cardiac organogenesis, tubulogenesis of the pancreas, kidney, lung, and salivary and mammary glands, and differentiation of keratinocytes in the skin and hair follicles (<xref ref-type="bibr" rid="B16">Melendez et al., 2011</xref>; <xref ref-type="bibr" rid="B13">Liu et al., 2013</xref>). In the central nervous system (CNS), Cdc42 is a positive regulator of its development through neurite initiation, axon growth, branching, myelination and specification, neuronal migration as well as neuronal polarity (<xref ref-type="bibr" rid="B16">Melendez et al., 2011</xref>; <xref ref-type="bibr" rid="B13">Liu et al., 2013</xref>). Cdc42 coordinates actin turnover and maintenance of actin structures stability in inner ear hair cells and the polarization of the sensory organ of the cochlea which determines the hearing function. The processes of cell polarization and actin microtubule dynamics also play a role in eye morphogenesis and photoreceptor differentiation (<xref ref-type="bibr" rid="B39">Ueyama et al., 2014</xref>).</p>
<p>Cdc42 participates in a wide spectrum of immune functions related to hematopoiesis and immune homeostasis as well as effector mechanisms of the innate and adaptive immune responses. In the bone marrow, Cdc42 regulates the multilineage development of blood progenitors and their egress from the bone marrow to the periphery. While Cdc42 is involved in the transcriptional program, it plays an important role in the differentiation of stem and progenitor cells, thus influencing the tight balance between myelopoiesis and erythropoiesis (<xref ref-type="bibr" rid="B19">Mulloy et al., 2010</xref>; <xref ref-type="bibr" rid="B20">Nayak et al., 2013</xref>), and thereby contributing to the immune system regulation and activation. In neutrophil granulocytes, the Cdc42 molecule, through the cytoskeleton rearrangement, controls migration, activation, degranulation, and reactive oxygen species formation thus influencing pathogen killing efficiency (<xref ref-type="bibr" rid="B32">Tackenberg et al., 2020</xref>). The migratory function of dendritic cells upon antigen stimulation and homing to the draining lymph nodes is also Cdc42 activity-depending, reflecting the Cdc42 substantial contribution to the initiation of the adaptive response of T CD4<sup>&#x2b;</sup> helper and CD8<sup>&#x2b;</sup> cytotoxic/suppressor lymphocytes (<xref ref-type="bibr" rid="B14">Luckashenak et al., 2013</xref>). The Cdc42 GTPase is an essential coordinator of B lymph cell development, adhesion, motility, antigen and mitogen-driven B cell receptor activation, cognate interaction with T lymph cells, and differentiation into antibody-producing plasma cells (<xref ref-type="bibr" rid="B29">Song et al., 2014</xref>; <xref ref-type="bibr" rid="B3">Burbage et al., 2015</xref>; <xref ref-type="bibr" rid="B6">Gerasimcik et al., 2015</xref>). It has also been shown that Cdc42 plays an important role in T cell thymopoiesis, proliferation, and survival (<xref ref-type="bibr" rid="B28">Smits et al., 2010</xref>).</p>
<p>Referring to the multiplicity of key regulatory functions of the Cdc42 GTPase in human biology, governing morphogenesis and functional homeostasis, the growing spectrum of clinical syndromes and pathogenic variants in <italic>CDC42</italic> underpinning the diverse phenotypes have been reported. The patients with a germlin heterozygous missense c.191A&#x3e;G (p.Tyr64Cys) variant demonstrated a range of congenital phenotypic features termed as Takenouchi-Kosaki syndrome (TKS). The syndrome is characterized by facial dysmorphism, developmental delay, sensorineural hearing loss accompanied by macrothrombocytopenia which compose a universal clinical phenotype observable in all eight hitherto described TKS patients (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B37">Uehara et al., 2019</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>). Short stature (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>), failure to thrive (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>) with camptodactyly (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>), structural abnormalities of the brain (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B37">Uehara et al., 2019</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>), and antibody deficiency (<xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>) represent not constant but frequent findings belonging to the symptomatology in TKS. Herein, we report an another patient presenting with distinctive symptoms of TKS (OMIM &#x23;616737) due to the heterozygousp.Tyr64Cys variant in <italic>CDC42</italic> and the clinical phenotype with congenital malformations, immunodeficiency, and gastrointestinal disorders.</p>
</sec>
<sec id="s2">
<title>Case report</title>
<sec id="s2-1">
<title>The patient</title>
<p>The male patient was born to a non-consanguineous couple from the first pregnancy complicated by premature uterine contracions and spontaneous vaginal delivery at the 38th week of gestational age (WGA), with an Apgar score of 8 points. His anthropometric parameters at birth were the following: weight 3.52&#xa0;kg [&#x2b;0.60 standard deviation score (SDS)], length 54&#xa0;cm (&#x2b;2.00 SDS), and head circumference 37&#xa0;cm (&#x2b;1.25 SDS). The perinatal period was complicated by respiratory distress syndrome due to congenital pneumonia resulting from ascending intrauterine infection and he required non-invasive ventilation support (nCPAP) and antibiotic therapy with ampicillin and gentamycin for 10&#xa0;days; subsequently, intermittent low-flow supplemental oxygen therapy was needed by the 33rd day of life. He presented features suggesting an underlying genetic syndrome consisting of facial dysmorphism, low-set ears, axial hypotonia with peripheral spasticity, camptodactyly, and cutaneous syndactyly of toes. The abdominal ultrasound examination demonstrated a duplex pelvicalyceal system of the right kidney and in echocardiography, an atrial septal defect (ASD) was found. In the cerebral magnetic resonance imaging (MRI), widening of the supratentorial ventricular system, in particular in the region of occipital and temporal horns of lateral ventricles caused by narrowing of the periventricular white matter as well as hypoplastic cerebellar vermis were found. Due to the poor sucking reflex in a newborn, making the initiation of breastfeeding and bottle-feeding unsuccessful despite the oral motor stimulation and frenotomy, feeding by a nasogastric tube to secure the nutrition was recommended. However, feeding intolerance and inappropriate weight gain velocity were observable. The infant&#x2019;s diet was modified and he received an amino acid-based formula with nutritional, caloric, and thickening supplementation yet failure to thrive was disturbing the patient&#x2019;s growth and weight gain, and achieving developmental milestones. At the age of 3&#xa0;months, the patient&#x2019;s weight was 5.15&#xa0;kg (&#x2212;0.80 SDS), length 60&#xa0;cm (&#x2b;2.30 SDS), and head circumference 37.5&#xa0;cm (&#x2212;1.50 SDS). At that time, the patient was admitted to the department of pediatric gastroenterology and metabolic diseases of our tertiary care university hospital to provide enteral feeding, a balloon-assisted endoscopic percutaneous gastrostomy (PEG) feeding tube was inserted using a push method. The procedure was complicated by an infection of the skin, abdominal wall, and intraperitoneal connective tissue of the anterior gastric wall, from which <italic>Staphylococcus aureus</italic> and <italic>Enterococcus faecalis</italic> were cultured, and hence, intensive intravenous antibiotic therapy with meropenem and replacement of PEG were necessary.</p>
<p>At the age of 9&#xa0;months, the patient was admitted to our university pediatric immunology unit for immunodiagnostics. He presented with proportionate growth retardation, his body mass stood at 6.9&#xa0;kg (&#x2212;1.25 SDS), length 70&#xa0;cm (&#x2212;1.50 SDS), head circumference 42,5&#xa0;cm (SDS &#x2212;1.62), and the weight-for-length ratio below the third percentile (&#x2212;2.25 SDS), bilateral profound sensorineural hypoacusis, axial hypotonia with peripheral spasticity, sloping forehead and low hairline, facial dysmorphism with an oblique setting of palpebral fissures, nasal tip pointed upwards, downturned corners of the lips, arched palate, low-set ears, camptodactyly and cutaneous syndactyly of toes, micropenis, and cryptorchidism. Developmental psychomotor delay was observable as the boy showed poor facial expression, did not make any sounds, get to a sitting position by himself nor sit without support. The clinical evaluation, biochemical laboratory tests, and ultrasound imaging assessment did not show features of lymphoproliferation, hemophagocytic lymphohistiocytosis (HLH), or bleeding disorders. The immunodiagnostic workup revealed macrothrombocytopenia, lymphopenia, low serum immunoglobulin A level, poor specific antibody response, and impairment of humoral and cellular immunity. An in-depth flow cytometric immunophenotyping showed abnormalities within the B and T lymph cell compartment primarily disrupted T cell development with low T CD4<sup>&#x2b;</sup> helper cell, recent thymic emigrant numbers, and na&#xef;ve T CD45RA &#x2b; cell to memory T CD45RO &#x2b; cell ratio. These were accompanied by low numbers of B cells and a decline in B cell memory development. The immunological diagnostics performed on the patient studied is displayed in <xref ref-type="table" rid="T1">Table 1</xref> (Part A). Due to the patient&#x2019;s history pointing to recurrent infections, microbiology studies were performed. The infectious workup targeted at airway and blood-borne viral and bacterial pathogens, proved negative as shown in <xref ref-type="table" rid="T1">Table 1</xref> (part B).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>The immunological workup with antibody-mediated response and peripheral blood flow cytometric immunophenotyping (Part A) and the infectious workup (Part B) in the patient with p.Tyr64Cys variant in <italic>CDC42</italic>.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th colspan="3" align="left">A. Immunological workup</th>
</tr>
<tr>
<th align="left">Antibody response</th>
<th align="left">Results</th>
<th align="left">Reference values</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td colspan="3" align="left">Immunoglobulins</td>
</tr>
<tr>
<td align="left">IgG</td>
<td align="left">474 mg/dL</td>
<td align="left">350&#x2013;1180 mg/dL</td>
</tr>
<tr>
<td align="left">IgA</td>
<td align="left">13 mg/dL</td>
<td align="left">36&#x2013;165 mg/dL</td>
</tr>
<tr>
<td align="left">IgM</td>
<td align="left">30 mg/dL</td>
<td align="left">30&#x2013;104 mg/dL</td>
</tr>
<tr>
<td align="left">IgE</td>
<td align="left">&#x3c;2 kU/L</td>
<td align="left">&#x3e;2 kU/L</td>
</tr>
<tr>
<td align="left">IgG subclasses</td>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">IgG1</td>
<td align="left">296 mg/dL</td>
<td align="left">194&#x2013;842 mg/dL</td>
</tr>
<tr>
<td align="left">IgG2</td>
<td align="left">34 mg/dL</td>
<td align="left">22&#x2013;300 mg/dL</td>
</tr>
<tr>
<td align="left">IgG3</td>
<td align="left">92 mg/dL</td>
<td align="left">19&#x2013;85 mg/dL</td>
</tr>
<tr>
<td align="left">IgG4</td>
<td align="left">18 mg/dL</td>
<td align="left">5-78 mg/dL</td>
</tr>
<tr>
<td align="left">Antigen-specific antibodies</td>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">Anti-Diphtheria toxoid IgG</td>
<td align="left">0.11 IU/mL</td>
<td align="left">&#x3e;1.0 IU/mL</td>
</tr>
<tr>
<td align="left">Anti-Tetanus toxoid IgG</td>
<td align="left">0.66 IU/mL</td>
<td align="left">&#x3e;1.0 IU/mL</td>
</tr>
<tr>
<td colspan="3" align="left">PB lymphocyte immunophenotyping</td>
</tr>
<tr>
<td align="left">Full PB count</td>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">WBC</td>
<td align="left">4,160cc</td>
<td align="left">4,000&#x2013;20,000cc</td>
</tr>
<tr>
<td align="left">Lymphocytes CD45&#x2b;/SSC low</td>
<td align="left">58.0%, 2,400cc</td>
<td align="left">57.0-83.6%, 4000&#x2013;8,600cc</td>
</tr>
<tr>
<td align="left">B cell compartment</td>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">B CD19&#x2b;</td>
<td align="left">16.0%, 400cc</td>
<td align="left">15.7&#x2013;34.1%, 700&#x2013;2,800cc</td>
</tr>
<tr>
<td align="left">Transitional B CD19&#x2b;CD38&#x2b;IgM&#x2b;&#x2b;</td>
<td align="left">47.2%, 189cc</td>
<td align="left">7.2&#x2013;19.7%, 100&#x2013;300cc</td>
</tr>
<tr>
<td align="left">Mature na&#x457;ve B CD19&#x2b;CD27-IgD&#x2b;</td>
<td align="left">89,3%, 357cc</td>
<td align="left">85.5&#x2013;93.4%, 600&#x2013;2,590cc</td>
</tr>
<tr>
<td align="left">Non-switched memory B (MZL) CD19&#x2b;CD27&#x2b;IgD&#x2b;</td>
<td align="left">1.9%, 8cc</td>
<td align="left">2.8&#x2013;7.4%, 30&#x2013;120cc</td>
</tr>
<tr>
<td align="left">Switched memory B CD19&#x2b;CD27&#x2b;IgD-</td>
<td align="left">2.3%, 9cc</td>
<td align="left">1.6&#x2013;7.0%, 20&#x2013;140cc</td>
</tr>
<tr>
<td align="left">Immature B CD19&#x2b;CD21lo</td>
<td align="left">34.2%, 137cc</td>
<td align="left">6.2&#x2013;20.3%, 70&#x2013;290cc</td>
</tr>
<tr>
<td align="left">Immature activated B CD19&#x2b;CD38loCD21lo</td>
<td align="left">3.4%, 14cc</td>
<td align="left">0.4&#x2013;3.3%, 0&#x2013;50cc</td>
</tr>
<tr>
<td align="left">Plasmablasts CD19&#x2b;CD38&#x2b;&#x2b;IgM-</td>
<td align="left">0.8%, 3cc</td>
<td align="left">0.2&#x2013;4.0%, 0&#x2013;60cc</td>
</tr>
<tr>
<td align="left">T cell compartment</td>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">T CD3&#x2b;</td>
<td align="left">51.0%, 1254cc</td>
<td align="left">49.0&#x2013;95.0%, 1,400&#x2013;11,500cc</td>
</tr>
<tr>
<td align="left">T helper CD3&#x2b;CD4&#x2b;</td>
<td align="left">24.0%, 593cc</td>
<td align="left">27.0&#x2013;81.0%, 1,000&#x2013;7,200cc</td>
</tr>
<tr>
<td align="left">T suppressor/cytotoxic CD3&#x2b;CD8&#x2b;</td>
<td align="left">23.0%, 561cc</td>
<td align="left">10.0&#x2013;35.0%, 200&#x2013;5,400cc</td>
</tr>
<tr>
<td align="left">CD4&#x2b;/CD8&#x2b;</td>
<td align="left">1.1</td>
<td align="left">1.5&#x2013;2.5</td>
</tr>
<tr>
<td align="left">CD45RA&#x2b;/CD45RO&#x2b;</td>
<td align="left">1.0</td>
<td align="left">&#x3e;1.0</td>
</tr>
<tr>
<td align="left">Recent thymic emigrants CD3&#x2b;CD4&#x2b;CD45RA&#x2b;CD31&#x2b;</td>
<td align="left">48.1%, 285cc</td>
<td align="left">65.0&#x2013;90.0%, 800&#x2013;6,200cc</td>
</tr>
<tr>
<td align="left">Na&#xef;ve T helper CD3&#x2b;CD4&#x2b;CD45RA&#x2b;CD27&#x2b;</td>
<td align="left">48.1%, 285cc</td>
<td align="left">77.0&#x2013;97.0%, 800&#x2013;7,600cc</td>
</tr>
<tr>
<td align="left">Central memory T helper CD3&#x2b;CD4&#x2b;CD45RA-CD27&#x2b;</td>
<td align="left">46.1%, 274cc</td>
<td align="left">2.0&#x2013;59.0%, 100&#x2013;1,300cc</td>
</tr>
<tr>
<td align="left">Effector memory T helper CD3&#x2b;CD4&#x2b;CD45RA-CD27-</td>
<td align="left">4.8%, 28cc</td>
<td align="left">0.1&#x2013;1.0%, 1&#x2013;72cc</td>
</tr>
<tr>
<td align="left">Terminally differentiated memory T helper CD3&#x2b;CD4&#x2b;CD45RA&#x2b;CD27-</td>
<td align="left">1.0%, 6cc</td>
<td align="left">0.0&#x2013;7.3%, 0&#x2013;400cc</td>
</tr>
<tr>
<td align="left">Follicular CXCR5&#x2b; T helper CD3&#x2b;CD4&#x2b;CD45RO&#x2b;CD185&#x2b;</td>
<td align="left">19.7%, 56cc</td>
<td align="left">9.0&#x2013;47.0%, 15&#x2013;110cc</td>
</tr>
<tr>
<td align="left">Regulatory T helper CD3&#x2b;CD4&#x2b;CD25&#x2b;&#x2b;CD127-</td>
<td align="left">2.6%, 15cc</td>
<td align="left">4.0&#x2013;18.0%, 60&#x2013;740cc</td>
</tr>
<tr>
<td align="left">Na&#xef;ve T suppressor/cytotoxic CD3&#x2b;CD8&#x2b;CD27&#x2b;CD197&#x2b;</td>
<td align="left">26.0%, 146cc</td>
<td align="left">31.0&#x2013;100%, 150&#x2013;3200cc</td>
</tr>
<tr>
<td align="left">Central memory T suppressor/cytotoxic CD3&#x2b;CD8&#x2b;CD45RA-CD27&#x2b;CD197&#x2b;</td>
<td align="left">5.4%, 30cc</td>
<td align="left">0.1&#x2013;13.0%, 2&#x2013;150cc</td>
</tr>
<tr>
<td align="left">Effector memory T suppressor/cytotoxic CD3&#x2b;CD8&#x2b;CD45RA-CD27-CD197-</td>
<td align="left">33.8%, 180cc</td>
<td align="left">1.0&#x2013;100%, 8&#x2013;1,400cc</td>
</tr>
<tr>
<td align="left">Terminally differentiated T suppressor/cytotoxic CD3&#x2b;CD8&#x2b;CD45RA&#x2b;CD27-CD197-</td>
<td align="left">11.8%, 66cc</td>
<td align="left">5.0&#x2013;78.0%, 17&#x2013;2,800cc</td>
</tr>
<tr>
<td colspan="3" align="left">NK cells</td>
</tr>
<tr>
<td align="left">NK CD3-CD45&#x2b;CD16&#x2b;CD56&#x2b;</td>
<td align="left">25.0%, 628cc</td>
<td align="left">2.0&#x2013;36.0%, 61&#x2013;510cc</td>
</tr>
<tr>
<td colspan="3" align="left">Lymphocyte stimulation tests</td>
</tr>
<tr>
<td align="left">PHA</td>
<td align="left">3,7261 cpm</td>
<td align="left">&#x3e;160,000 cpm</td>
</tr>
<tr>
<td align="left">PHA stimulation index</td>
<td align="left">142.2</td>
<td align="left">&#x3e;65.0</td>
</tr>
<tr>
<td align="left">Anti-CD3</td>
<td align="left">6,6818 cpm</td>
<td align="left">&#x3e;15,000 cpm</td>
</tr>
<tr>
<td align="left">Anti-CD3 stimulation index</td>
<td align="left">255.0</td>
<td align="left">&#x3e;60.0</td>
</tr>
<tr>
<td align="left">Pansorbin cells</td>
<td align="left">4,399 cpm</td>
<td align="left">&#x3e;2,000 cpm</td>
</tr>
<tr>
<td align="left">Pansorbin cells stimulation index</td>
<td align="left">16.8</td>
<td align="left">&#x3e;5.0</td>
</tr>
<tr>
<td colspan="3" align="left">Complement</td>
</tr>
<tr>
<td align="left">C3</td>
<td align="left">148 mg/dL</td>
<td align="left">90&#x2013;180 mg/dL</td>
</tr>
<tr>
<td align="left">C4</td>
<td align="left">34 mg/dL</td>
<td align="left">10&#x2013;40 mg/dL</td>
</tr>
<tr>
<td align="left">CH50</td>
<td align="left">156 EqU/mL</td>
<td align="left">70&#x2013;187 EqU/mL</td>
</tr>
<tr>
<td colspan="3" align="left">B. Infectious workup</td>
</tr>
<tr>
<td colspan="2" align="left" style="background-color:#BFBFBF">Blood</td>
<td align="center" style="background-color:#BFBFBF">Results</td>
</tr>
<tr>
<td colspan="2" align="left">Viral panel Cytomegalovirus-DNA, Epstein-Barr virus-DNA, Adenovirus-DNA, Herpes simplex virus 1 and 2-DNA, Human Herpes virus 6 and 7-DNA, Enterovirus-RNA, Human Parechovirus-RNA, Varicella zoster virus-DNA, Human Parvovirus B19-DNA, Hepatitis B-DNA, Hepatitis C-DNA</td>
<td align="center">All (-)</td>
</tr>
<tr>
<td colspan="2" align="left">Bacterial panel Streptococcus pneumoniae-DNA, Neisseria meningitidis-DNA, Haemophilus influenzae-DNA</td>
<td align="center">All (-)</td>
</tr>
<tr>
<td colspan="3" align="left">Airways</td>
</tr>
<tr>
<td colspan="2" align="left">Airway aspirate Influenza virus A, A H1N1, B-RNA, Rhinovirus-RNA, Coronavirus NL63, 229E, OC43, HKU1-RNA, panel Parainfluenza virus 1,2,3,4-RNA, Human metapneumovirus A, B-RNA, Respiratory syncytial virus A, B-RNA, Enterovirus-RNA, Parechovirus-RNA, Bocavirus-DNA, Mycoplasma pneumoniae-DNA, Chlamydophila pneumoniae-DNA, Staphylococcus aureus-DNA, Streptococcus pneumoniae-DNA, Haemophilus influenzae-DNA</td>
<td align="center">All (-)</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The genetic analysis using exome technique on trio was performed. In the patient, it revealed the c.191A&#x3e;G (p.Tyr64Cys) (NM_001791.4) variant in the <italic>CDC42</italic> gene. The presence of the variant was confirmed in the proband by Sanger sequencing and excluded in both parents, indicating that the variant occurred <italic>de novo</italic> in a heterozygous state (<xref ref-type="fig" rid="F1">Figure 1</xref>). The p.Tyr64Cys variant in conjunction with the patient&#x2019;s clinical phenotype is causative for TKS (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B37">Uehara et al., 2019</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>). The summary of the clinical phenotypic features, course of the disease including gastroenterological problems, diagnostic procedures uncovering congenital anomalies and immunodeficiency, as well as implemented multidisciplinary care are displayed in Timeline (<xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>The NGS reads of the trio, highlighting the <italic>de novo</italic> nature of the c.191A&#x3e;G; pTyr64Cys variant.</p>
</caption>
<graphic xlink:href="fgene-14-1108852-g001.tif"/>
</fig>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Timeline showcasing the course of the disease, establishing the diagnosis of Takenouchi-Kosaki syndrome and the multidisciplinary approach. Photographs show gastrostomy and abdominal wall infection <bold>(A)</bold>, camptodactyly <bold>(B)</bold>, syndactyly of toes <bold>(C)</bold>, and distictive facial gestalt <bold>(D)</bold>.</p>
</caption>
<graphic xlink:href="fgene-14-1108852-g002.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="methods" id="s3">
<title>Methods</title>
<sec id="s3-1">
<title>The molecular genetic analysis</title>
<p>Trio whole exome sequencing (WES) analysis was performed on the proband and his parents.</p>
<p>Starting from EDTA blood, genomic DNA was isolated according to the manufacturers&#x2019; instructions using QIAamp DNA Blood Maxi Kit on a QiaSymphony instrument (Qiagen, Hilden, Germany). DNA quantity and quality are determined using Qubit&#xae;uFluorometer and NanoDrop ND-8000 (Thermo Fisher Scientific, Dreieich, Germany). Sequencing libraries were prepared for each sample from 50&#xa0;ng DNA using the Twist enrichment workflow (Twist Bioscience, San Francisco, CA, United States) and a custom-design enrichment probe set (CeGaT ExomeXtra V2). Library preparation and capture was performed according to the manufacturer&#x2019;s instructions and paired-end sequencing was performed on a NovaSeq6000 instrument (Illumina, San Diego, CA, United States) with 2 &#xd7; 100 base pairs (bp) read length. Sequence data were processed with Illumina bcl2fastq2. Adapter sequences were removed with Skewer and the sequences obtained, were aligned to the human reference genome (hg19) with the Burrows Wheeler aligner (BWA mem). Sequences that could not be clearly assigned to a genomic position were removed, as were sequence duplicates that were probably due to amplification (internal software). Copy number variations (CNV) were computed on uniquely mapping, non-duplicate, high quality reads using an internally developed method based on sequencing coverage depth. Briefly, we used reference samples to create a model of the expected coverage that represents wet-lab biases as well as intersample variation. CNV calling was performed by computing the sample&#x2019;s normalized coverage profile and its deviation from the expected coverage. Genomic regions were called as variant if they deviate significantly from the expected coverage. Sequence variants (single nucleotide exchanges and short insertions/deletions) were determined from the remaining high-quality sequences (CeGaT StrataCall). Resulting variants were annotated with population frequencies from gnomAD (2.1/3.1) and an internal database (CeGaT), factoring in external databases (e.g., HGMD, ClinVar), and with transcript information from Ensembl, RefSeq, Gencode, and CCDS. All variants were manually assessed before inclusion in the final report, and classified and reported based on ACMG/ACGS-2020v4.01 guidelines (<xref ref-type="bibr" rid="B24">Richards et al., 2015</xref>).</p>
</sec>
<sec id="s3-2">
<title>Flow cytometric peripheral blood (PB) lymph cell immunophenotyping</title>
<p>Cells were labeled with the following murine fluorochrome-stained monoclonal antibodies: anti-CD45 FITC (fluorescein isothiocyanate), anti-CD14 PE (phycoerythrin), anti-CD19 PE, anti-CD19 PerCP (peridinin chlorophyll protein), anti-IgM FITC, anti-IgD FITC, anti-CD38 APC (allophycocyanin), anti-CD27 PE, anti-CD21 FITC, as well as anti-CD3 FITC, anti-CD4 FITC, CD45RA FITC, CD127 FITC, CD185 FITC, anti-CD8 PE, anti-CD16<sup>&#x2b;</sup>CD56 PE, CD25 PE, CD31 PE, CD45RO PE, anti-CD3 PerCP, CD197 PerCP, anti-CD4 APC and anti-CD8 APC (all Beckton-Dickinson Biosciences, United States). The acquisition of cells and analysis was carried out with the use of the flow cytometer FACSCanto and FACSDiva software (Beckton-Dickinson, United States). With sequential gating on biparametric scattering CD45<sup>&#x2b;</sup>CD14-lymphocytes, the following lymphocyte subpopulations were identified:<list list-type="simple">
<list-item>
<p>- CD19<sup>&#x2b;</sup> B cells, immature CD19<sup>&#x2b;</sup>CD21lo, immature activated CD19<sup>&#x2b;</sup>CD38loCD21lo, transitional CD19<sup>&#x2b;</sup>CD38hisIgMhi, non-switched memory CD19<sup>&#x2b;</sup>CD27&#x2b;sIgD&#x2b;, switched memory CD19<sup>&#x2b;</sup>CD27&#x2b;IgD- B cells, and CD19<sup>&#x2b;</sup>CD38hisIgM-plasmablasts</p>
</list-item>
<list-item>
<p>- CD3<sup>&#x2b;</sup> T cells, CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup> T helper cells, CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD31<sup>&#x2b;</sup>CD45RA &#x2b; recent thymic emigrants, na&#xef;ve CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD27<sup>&#x2b;</sup>CD45RA&#x2b;, regulatory CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD25&#x2b;&#x2b;CD27<sup>&#x2212;</sup>, central memory CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD27<sup>&#x2b;</sup>CD45RO&#x2b;, effector memory CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD27<sup>&#x2212;</sup>CD45RO&#x2b;, terminally differentiated CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD27<sup>&#x2212;</sup>CD45RA&#x2b;, follicular CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD185&#x2b;CD45RO&#x2b;, and regulatory CD3<sup>&#x2b;</sup>CD4<sup>&#x2b;</sup>CD45RO&#x2b;CD127-CD25&#x2b;&#x2b; T helper cells. Among CD3<sup>&#x2b;</sup>CD8<sup>&#x2b;</sup> cytotoxic T cells, the following subsets were distinguished: na&#xef;ve CD3<sup>&#x2b;</sup>CD8<sup>&#x2b;</sup>CD197&#x2b;CD27<sup>&#x2b;</sup>CD45RA&#x2b;, central memory CD3<sup>&#x2b;</sup>CD8<sup>&#x2b;</sup>CD197&#x2b;CD27<sup>&#x2b;</sup>CD45RO&#x2b;, effector memory CD3<sup>&#x2b;</sup>CD8<sup>&#x2b;</sup>CD197-CD27<sup>&#x2212;</sup>CD45RO&#x2b;, and terminally differentiated CD3<sup>&#x2b;</sup>CD8<sup>&#x2b;</sup>CD197-CD27<sup>&#x2212;</sup>CD45RA &#x2b; cells.</p>
</list-item>
<list-item>
<p>- CD3<sup>&#x2212;</sup>CD16<sup>&#x2b;</sup>CD56<sup>&#x2b;</sup> NK cells.</p>
</list-item>
</list>
</p>
<p>The relative values of PB lymphocytes, the B, T, and NK cells of the total lymphocyte population as well as B and T cell subsets were calculated. The absolute counts of all cell subsets were calculated from the PB leukocyte counts. A comparative analysis was done with the reference cut-off values of B and T cell subsets for pediatric populations of different age groups (<xref ref-type="bibr" rid="B22">Pi&#x105;tosa et al., 2010</xref>; <xref ref-type="bibr" rid="B26">Schatorje et al., 2012</xref>).</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Referring to the heterogeneity of clinical manifestations and the complexity of mutual phenotype-genotype interrelations in hitherto reported alterations in <italic>CDC42</italic>, it must be highlighted that establishing the definitive diagnosis of a <italic>CDC42</italic>- related syndrome, including TKS, is challenging for clinicians. The phenotypic features of TKS related to the p.Tyr64Cys variant in <italic>CDC42</italic> comprise psychomotor developmental delay, intellectual disability, dysmorphism, sensorineural hearing loss, cardiac and genitourinary malformations, and macrothrombocytopenia (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B37">Uehara et al., 2019</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>), consistent also with the herein reported patient. The summary of phenotypic features of patients with TKS due to the c.191A&#x3e;G; p.Tyr64Cys variant in <italic>CDC42</italic> are summarized in <xref ref-type="table" rid="T2">Table 2</xref>. Noteworthy, in a single patient with the same p.Tyr64Cys variant, localized in the switch II domain of the <italic>CDC42</italic> gene, affecting Cdc42 binding to multiple effectors and regulators, and causing TKS (<xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>), immune dysregulation with autoinflammation was observable. It was characterized by interleukin (IL)-6, IL-18, IL-18 binding protein (BPa), and CXCL9 chemokine hypercytokinemia accompanied by myelofibrosis (<xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>). This phenomenon reflects the clinical intersubject variability within the p.Tyr64Cys variant group and possible overlap with C-terminal variants in the <italic>CDC42</italic> gene and highlights that the p.Tyr64Cys variant does support the hypothesis that the gene is associated with distinct diseases. The clinical phenotypes related to C-terminal variants are characterized by severe neonatal-onset dyshematopoiesis and immune dysregulation including autoinflammation, rash, and HLH (NOCARH syndrome) (<xref ref-type="bibr" rid="B7">Gernez et al., 2019</xref>; <xref ref-type="bibr" rid="B11">Lam et al., 2019</xref>; <xref ref-type="bibr" rid="B8">He et al., 2020</xref>; <xref ref-type="bibr" rid="B4">Coppola et al., 2022</xref>) with a chronic excess of the inflammatory cytokine, IL-18 as a hallmark of these disorders (<xref ref-type="bibr" rid="B17">Miyazawa and Wada, 2022</xref>; <xref ref-type="bibr" rid="B27">Shimizu et al., 2022</xref>). A similar phenotype distinguished by the hyperinflammatory state, full-blown HLH, and hitherto not reported, development of non-Hodgkin lymphoma has also been described by our group in the patient with a novel p.Cys81Tyr variant (<xref ref-type="bibr" rid="B31">Szczawi&#x144;ska-Pop&#x142;onyk et al., 2020</xref>).</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>The summary of clinical symptomatology presented by patients with the same p.Tyr64Cys variant in <italic>CDC42</italic>.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th colspan="11" align="left">Clinical workup of takenouchi-kosaki syndrome</th>
</tr>
<tr>
<th align="left">Author (references)</th>
<th align="left">
<xref ref-type="bibr" rid="B33">Takenouchi et al. (2015)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B34">Takenouchi et al. (2016)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B18">Motokawa et al. (2018)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B9">Ishikawa et al. (2021)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B37">Uehara et al. (2019)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B15">Martinelli et al. (2018)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B2">Bucciol et al. (2020)</xref>
</th>
<th align="left">
<xref ref-type="bibr" rid="B25">Santoro et al. (2021)</xref>
</th>
<th align="left">Current report</th>
<th align="left">Total</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Age at diagnosis</td>
<td align="left">18&#xa0;years</td>
<td align="left">22&#xa0;years</td>
<td align="left">12&#xa0;years</td>
<td align="left">15&#xa0;years</td>
<td align="left">4&#xa0;years</td>
<td align="left">15&#xa0;years</td>
<td align="left">25&#xa0;years</td>
<td align="left">7&#xa0;years</td>
<td align="left">9&#xa0;months</td>
<td align="left"/>
</tr>
<tr>
<td rowspan="2" align="left">Pregnancy</td>
<td rowspan="2" align="left">normal</td>
<td rowspan="2" align="left">normal</td>
<td align="left">Fetal hydrops</td>
<td rowspan="2" align="left">normal</td>
<td rowspan="2" align="left">normal</td>
<td rowspan="2" align="left">normal</td>
<td rowspan="2" align="left">normal</td>
<td rowspan="2" align="left">Abortion threats at first trimester</td>
<td rowspan="2" align="left">Premature uterine contractions</td>
<td rowspan="2" align="left">3 (33%)</td>
</tr>
<tr>
<td align="left">Pleural effusion</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="10" align="left">Feeding disorders</th>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Feeding intolerance</td>
<td align="left">no</td>
<td align="left">yes, intestinal lymphangiectasia</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes, poor sucking and swallowing</td>
<td align="left">yes, poor sucking reflex, oral feeding disability</td>
<td align="left">3 (33%)</td>
</tr>
<tr>
<td align="left">Failure to thrive</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">7 (78%)</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="10" align="left">Infections</th>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Respiratory</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes, bronchiectasis, fatal pneumonia</td>
<td align="left">no</td>
<td align="left">Congenital pneumonia</td>
<td align="left">5 (56%)</td>
</tr>
<tr>
<td align="left">Gastrointestinal</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">Anterior gastric wall and intraperitoneal connective tissue</td>
<td align="left">1 (11%)</td>
</tr>
<tr>
<td align="left">Genitourinary</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes, Hydronephrosis</td>
<td align="left">no</td>
<td align="left">1 (11%)</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="6" align="left">Congenital anomalies</th>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Abnormal development of the internal organs</td>
<td align="left">Persistent ductus arteriosus; Inguinal hernia</td>
<td align="left">Retinal dysplasia with congenital detachment</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">Cardiac anomaly (unspecified)</td>
<td align="left">no</td>
<td align="left">Persistent ductus arteriosus; Ventricular septal defect</td>
<td align="left">Atrial septal defect; Duplex pelvicalceal system of the right kidney; Small penis, scrotal hypoplasia; cryptorchidism</td>
<td align="left">5 (56%)</td>
</tr>
<tr>
<td align="left">Microcephaly</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">4 (44%)</td>
</tr>
<tr>
<td align="left">Short stature</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">7 (78%)</td>
</tr>
<tr>
<td align="left">Camptodactyly</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">8 (89%)</td>
</tr>
<tr>
<td align="left">Syndactyly</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">Cutaneous syndactyly of 2&#x2013;3 toes bilaterally</td>
<td align="left">Cutaneous syndactyly of 2&#x2013;4 toes of the left and 2&#x2013;3 toes of the right foot</td>
<td align="left">2 (22%)</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="6" align="left">Facial features</th>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Arched eyebrows</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">5 (56%)</td>
</tr>
<tr>
<td align="left">Ptosis</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">4 (44%)</td>
</tr>
<tr>
<td align="left">Eversion of the lower eyelid</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">5 (56%)</td>
</tr>
<tr>
<td align="left">Synophrys</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">6 (67%)</td>
</tr>
<tr>
<td align="left">Exotropia</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">5 (56%)</td>
</tr>
<tr>
<td align="left">Midface hypoplasia</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">6 (67%)</td>
</tr>
<tr>
<td align="left">Short philtrum</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">smooth</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">4 (44%)</td>
</tr>
<tr>
<td align="left">Thin upper lip</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">6 (67%)</td>
</tr>
<tr>
<td align="left">Malocclusion</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">no</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">5 (56%)</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="6" align="left">Psychomotor disability</th>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Speech</td>
<td align="left">simple words</td>
<td align="left">no</td>
<td align="left">simple words</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">Absent (not yet)</td>
<td align="left">2 (22%)</td>
</tr>
<tr>
<td align="left">Sensorineural hearing loss</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">9 (100%)</td>
</tr>
<tr>
<td align="left">Walking independency</td>
<td align="left">4 years</td>
<td align="left">3 years</td>
<td align="left">3 years</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">Absent (not yet)</td>
<td align="left">3 (33%)</td>
</tr>
<tr>
<td align="left">Neurological symptoms</td>
<td align="left">tremor; ataxic gait</td>
<td align="left">Nystagmus, agitation, sleep impairment</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">Seizures</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">Poor sucking reflex; axial hypotonia, peripheral spasticity</td>
<td align="left">4 (44%)</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="6" align="left">MR imaging of the CNS</th>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Cerebellar atrophy</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes, Dandy-Walker variant</td>
<td align="left">no</td>
<td align="left">Hypoplastic cerebellar vermis</td>
<td align="left">5 (56%)</td>
</tr>
<tr>
<td align="left">Corpus callosum hypoplasia</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">no</td>
<td align="left">1 (11%)</td>
</tr>
<tr>
<td align="left">Ventriculomegaly</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">8 (89%)</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th colspan="6" align="left">Laboratory findings</th>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
<th align="left"/>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Macrothrombocytopenia</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">intermittent</td>
<td align="left">yes</td>
<td align="left">9 (100%)</td>
</tr>
<tr>
<td align="left">Antibody deficiency</td>
<td align="left">no data</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">yes</td>
<td align="left">no data</td>
<td align="left">yes</td>
<td align="left">5 (56%)</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The ever-increasing use of the next-generation sequencing (NGS) approach enabling uncovering molecular genetic diagnosis underpinning the clinical symptomatology has led to better recognition of variable <italic>CDC42</italic> gene alterations and the spectrum of clinical immunophenotypes. A variable degree of immunodeficiency has been primarily linked to the variants affecting the switch II domain in the <italic>CDC42</italic> gene (<xref ref-type="bibr" rid="B33">Takenouchi et al., 2015</xref>; <xref ref-type="bibr" rid="B34">Takenouchi et al., 2016</xref>; <xref ref-type="bibr" rid="B15">Martinelli et al., 2018</xref>; <xref ref-type="bibr" rid="B18">Motokawa et al., 2018</xref>; <xref ref-type="bibr" rid="B37">Uehara et al., 2019</xref>; <xref ref-type="bibr" rid="B2">Bucciol et al., 2020</xref>; <xref ref-type="bibr" rid="B1">Asiri et al., 2021</xref>; <xref ref-type="bibr" rid="B9">Ishikawa et al., 2021</xref>; <xref ref-type="bibr" rid="B10">Kashani et al., 2021</xref>; <xref ref-type="bibr" rid="B25">Santoro et al., 2021</xref>). In the reported patients, the antibody immune response ranged from normal referenced serum immunoglobulin levels to panhypogammaglobulinemia affecting the production of all immunoglobulin isotypes with low specific antibody response to diphtheria, tetanus, and mumps vaccine antigens. Antibody deficiency is a consequence of disrupted Cdc42 activity affecting actin cytoskeleton mobility, cellular trafficking, regulation of transcription, and proliferation which occur in multiple cell lineages in <italic>CDC42</italic> mutants, including the B and T cell compartments. Furthermore, in the actin cytoskeleton remodeling and cell polarity regulation, the Cdc42 GTPase activating interaction is required with the GTPase-binding domain of the Cdc42 effector, the Wiskott-Aldrich protein (WASP) that is essential for B and T cell differentiation (<xref ref-type="bibr" rid="B36">Tangye et al., 2019</xref>). The presently described patient has normal for age IgG, and IgM, decreased IgA levels, normal distribution of IgG subclasses, low antigen-specific anti-tetanus and anti-diphtheria antibodies, accompanied by lymphopenia and aberrant B and T lymph cell, primarily T helper cell development that might be underpinning the proneness to infections and immune dysregulation. Referring to the clinical reports, in 2022, disorders of the actin cytoskeleton affecting immunity have been included by the International Union of Immunological Societies Expert Committee in the updated classification of human inborn errors of immunity (<xref ref-type="bibr" rid="B35">Tangye et al., 2022</xref>).</p>
<p>In this report, we add feeding disorders as well as gastric and abdominal walls infection to the clinical symptomatology of the p.Tyr64Cys variant-related syndrome. Noteworthy, the aberrant immune response in our patient may be an important factor contributing to the chronic inflammation and malfunctioning of the gastrointestinal tract leading to a vicious circle of immunodeficiency with immune dysregulation and malnutrition with poor weight gaining, which, in turn, may exacerbate dysfunction of the immune system. This hypothesis may be supported by the master regulatory role of Cdc42 GTPase in maintaining the integration and immune homeostasis of the intestinal mucosa, and as a key player in the actin cytoskeleton dynamics, it controls mechanisms of inflammation, autoimmunity, and cancerogenesis. Intestinal cell proliferation, epithelial integrity, and cellular turnover as well as enterocyte extrusion and shedding are tightly controlled processes regulated by Cdc42-dependent actin cytoskeletal contractility and reorganization (<xref ref-type="bibr" rid="B23">Pradham et al., 2021</xref>; <xref ref-type="bibr" rid="B21">Ngo et al., 2022</xref>).</p>
</sec>
<sec id="s5">
<title>The patient&#x2019;s perspective</title>
<p>The patient&#x2019;s perspective is largely dependent on the detection of the causative variant and establishing a definitive genetic diagnosis which primarily means an explanation for the multifaceted disease. Both for the family and leading physicians, it paves the way for future diagnostic and therapeutic interventions, shedding light on the expanded phenotype with immunodeficiency and gastrointestinal disorders. Prophylaxis against infections with azithromycin is legitimate as the first-line protective measure against respiratory tract infections. Administration of inactive vaccines needs to be recommended as an attempt to trigger the mounting of the immune memory yet the antigen-specific response in the patient may not be adequate (<xref ref-type="bibr" rid="B30">Szczawi&#x144;ska-Pop&#x142;onyk et al., 2015</xref>). Regular monitoring is required by a multidisciplinary team including specialists in neurology, hematology, otorhinolaryngology, gastroenterology, cardiology, and nephrology, under the pediatric immunologist&#x2019;s supervision. Further clinical observation is needed as other phenotypic features may appear and novel treatment modalities may be proposed according to the course of the disease. It is worth noting that the Rho GTPase Cdc42 lies downstream of the master regulator Ras, crucial for cell malignant transformation. The crosstalk between the Cdc42 molecule and the network of effectors in the immune system is increasingly recognized, and new therapeutic targets based on new regulator partners are expected, and their translation into the treatment strategies for cancer creating a future therapeutic perspective (<xref ref-type="bibr" rid="B5">El Masri and Delon, 2021</xref>).</p>
<p>Importantly, the everyday struggle with the child&#x2019;s intellectual and motor disabilities, failure to thrive and feeding disorders, recurrent infections, increased risk of tumorigenesis, and frequent medical consultations is a disease burden for the patient&#x2019;s relatives. To cope with the multisystemic syndrome of TKS, medical and social support is needed for the family to enhance undertaking positive health-promoting stimulating activities. Therefore, the <italic>de novo</italic> nature of the pathogenic <italic>CDC42</italic> variant has an important informative role for the family.</p>
<p>The ever-increasing progress in molecular genetic studies contributes to better definition and delineation of the Takenouchi-Kosaki syndrome. It is a multifaceted disease with complex phenotypic features and a broad dysmorphology, neurological, hematological, hormonal, respiratory as well as immunological symptomatology. In this report, we add gastrointestinal and feeding disorders to the spectrum of syndromic manifestations. Uncovering the causative pathogenic variant in the <italic>CDC42</italic> gene is of utmost importance for understanding the complex mutual genetic and phenotypic relationships and disease pathophysiology as well as for the informativeness of the patient&#x2019;s family and the leading physician, contributing to diagnostic and therapeutic management and anticipating the prognosis.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The datasets for this article are not publicly available due to concerns regarding participant/patient anonymity. Requests to access the datasets should be directed to the corresponding author.</p>
</sec>
<sec id="s7">
<title>Ethics statement</title>
<p>Ethical review and approval was not required for the study on human participants in accordance with the local legislation and institutional requirements. Written informed consent to participate in this study was provided by the participants' legal guardian/next of kin. Written informed consent was obtained from the participants' legal guardian/next of kin for the publication of this case report.</p>
</sec>
<sec id="s8">
<title>Author contributions</title>
<p>AS-P was responsible for the intellectual conception of the study, data acquisition and interpretation, and drafted the manuscript. NP and BB were responsible for acquisition of data, their analysis, and participated in drafting the manuscript. MB-S was responsible for genetic molecular analysis, participated in acquisition of data and their interpretation, and in drafting the manuscript. JJ, KH, and SB were responsible for the molecular genetic analysis, interpretation of data, and participated in drafting the manuscript. JW critically revised the work for its intellectual content. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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