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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1105900</article-id>
<article-id pub-id-type="doi">10.3389/fgene.2023.1105900</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Pan-cancer analysis of ADAMs: A promising biomarker for prognosis and response to chemotherapy and immunotherapy</article-title>
<alt-title alt-title-type="left-running-head">Ma and Yu</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1105900">10.3389/fgene.2023.1105900</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Ma</surname>
<given-names>Bo</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1990550/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yu</surname>
<given-names>Riyue</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
</contrib-group>
<aff>
<institution>Department of Stomatology</institution>, <institution>Beijing Shijitan Hospital</institution>, <institution>Capital Medical University</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1898599/overview">Changsheng Xing</ext-link>, University of Southern California, United States</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2113620/overview">Xin Liu</ext-link>, University of Southern California, United States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1778887/overview">Laralynne Przybyla</ext-link>, University of California, San Francisco, United States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/872209/overview">Jianyang Du</ext-link>, Shandong Provincial Hospital Affiliated to Shandong First Medical University, China</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Bo Ma, <email>mabo3476@bjsjth.cn</email>; Riyue Yu, <email>yu-riyue@bjsjth.cn</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Cancer Genetics and Oncogenomics, a section of the journal Frontiers in Genetics</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>04</day>
<month>04</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1105900</elocation-id>
<history>
<date date-type="received">
<day>23</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>20</day>
<month>03</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Ma and Yu.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Ma and Yu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>
<bold>Background:</bold> Members of a disintegrin and metalloproteinase (ADAM) family play a vital role in cancer development. However, a comprehensive analysis of the landscape of the ADAM family in pan-cancer remains to be performed.</p>
<p>
<bold>Methods:</bold> The correlation of the expression level and prognostic value with ADAMs in a pan-cancer cohort and the relationship between ADAMs and the stemness score, tumour microenvironment (TME), chemotherapy-related drug sensitivity, immune subtype, and immunotherapy outcome were investigated.</p>
<p>
<bold>Results:</bold> ADAMs were differentially expressed between tumour and para-carcinoma tissues in the pan-cancer cohort, and the expression of ADAMs was significantly correlated with patient prognosis. Furthermore, ADAMs were significantly correlated with the stromal score and immune score based on the TME analysis. Additionally, ADAMs were also correlated with DNAss and RNAss in the pan-cancer cohort. On investigating the CellMiner database, ADAMs were revealed to be significantly correlated with the sensitivity of various drugs, including raloxifene and tamoxifen. Moreover, in the IMvigor210 and GSE78220 cohorts, ADAMs were correlated with immunotherapy response and immune activation genes. Furthermore, quantitative real-time polymerase chain reaction (qRT-PCR) and immunohistochemistry (IHC) were utilised to determine the differential level of ADAM9 in cancer and para-carcinoma tissues in patients&#x2019; samples.</p>
<p>
<bold>Conclusion:</bold> This study elucidates the importance of ADAMs in cancer progression and lays a foundation for further exploration of ADAMs as potential pan-cancer targets.</p>
</abstract>
<kwd-group>
<kwd>ADAMs</kwd>
<kwd>pan-cancer</kwd>
<kwd>TME</kwd>
<kwd>prognosis</kwd>
<kwd>chemotherapy</kwd>
<kwd>immunotherapy</kwd>
</kwd-group>
<contract-num rid="cn001">7194279</contract-num>
<contract-sponsor id="cn001">Beijing Municipal Natural Science Foundation<named-content content-type="fundref-id">10.13039/501100005089</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>The extracellular matrix (ECM) is a macromolecular structure consisting of the basement membrane (BM) and intercellular substance (<xref ref-type="bibr" rid="B22">Padhi and Nain, 2020</xref>). The ECM constitutes a complex network structure that supports and connects tissue structures and regulates tissue formation and cellular physiological activities (<xref ref-type="bibr" rid="B39">Valdoz et al., 2021</xref>).</p>
<p>The ECM acts as an important bio-barrier for tumour local or distant metastasis. Tumour cells secrete proteolytic enzymes to degrade the ECM, thereby creating a local lysis zone for cancer cell intravasation and extravasation (<xref ref-type="bibr" rid="B20">Najafi et al., 2019</xref>). Generally, cancer cells with a high degree of malignancy have a strong proteolytic effect, which can erode and destroy the membrane and promote metastasis. The enzymes involved in this process are mainly serine proteases, such as plasminogen activator (PA) and metalloproteinase (MP), which include collagenase IV, matrix-degrading enzymes, and hyaluronidase (<xref ref-type="bibr" rid="B18">Mohan et al., 2020</xref>). Various secreted proteins, including cross-linkers, modifying enzymes, and proteases and their inhibitors, regulate ECM homoeostasis. Thus, the activation or inhibition of the aforementioned proteins promotes the proliferation and invasion of cancer cells, which suggests their potential as therapeutic targets in cancer treatment (<xref ref-type="bibr" rid="B41">Walker et al., 2018</xref>).</p>
<p>In addition to degradation, the turnover of the matrix is also significantly important for ECM homoeostasis (<xref ref-type="bibr" rid="B8">Huang et al., 2021</xref>). The substrate turnover of the matrix is regulated by various enzyme families. The &#x201c;normal&#x201d; stroma degradation followed by an increase in the stromal turnover of the tumour promotes the replacement by the tumour stroma, reinforces aggressive features, and removes physical barriers (e.g., the basement membrane), consequently favouring the malignancy and metastasis of tumours (<xref ref-type="bibr" rid="B21">Nissen et al., 2019</xref>). As an important ligand pool of growth factors, the degradation and turnover of the ECM could activate the binding growth factors and induce intracellular signalling responses. Moreover, the ECM not only includes enzymes such as growth factors, chemokines, and cytokines but also is a repository for inorganic molecules (<xref ref-type="bibr" rid="B5">Girigoswami et al., 2021</xref>). During matrix remodelling, divalent cations like calcium ions are activated to facilitate calcium transport, which further induces the activation of matrix metalloproteinases (MMPs), a disintegrin and metalloproteinases (ADAMs), and ADAMs with thrombospondin motifs (ADAMTSs), which constitute the calcium-dependent, zinc-containing thyroxine superfamily endopeptidases (<xref ref-type="bibr" rid="B36">Theret et al., 2021</xref>).</p>
<p>The ADAM family can be divided into trans-model ADAM and secretory ADAM components based on structural differences (<xref ref-type="bibr" rid="B29">Saha et al., 2019</xref>). The genomic distribution of ADAMs is presented in <xref ref-type="table" rid="T1">Table 1</xref>. The pre-control region ensures that the metalloprotease domain is inactive, while the catalytic site is activated by the activation of the cysteine switch mechanism. The furin recognition site (RXXR sequence) is located between the pre-control region and the metalloprotease domain, which is involved in the intracellular activation of many ADAM family members in a trans-Golgi network by a furin-like preprotein convertase. The active site of the metalloprotease domain of ADAM molecule with proteolytic activity contains a common &#x201c;HEXGH&#x201d; conserved sequence, whose alteration will result in the loss of proteolytic activity (<xref ref-type="bibr" rid="B16">Malemud, 2019</xref>). Although the ADAM family has been extensively studied, little is known about the specificity of ADAM substrates, which are hypothesised to be determined by disintegrin and cysteine domains, especially the interaction of a substrate and enzyme (<xref ref-type="bibr" rid="B6">Heib et al., 2020</xref>). The main function of ADAM molecules is to mediate &#x201c;extracellular domain shedding,&#x201d; a post-translational mechanism. ADAMs can induce proteolytic processing to release the membrane-attached proteins and activate the cleaved molecules, which are involved in growth factor signalling, cell migration, cell adhesion, and other aspects (<xref ref-type="bibr" rid="B2">Camodeca et al., 2019</xref>). Studies report that ADAM is abnormally upregulated and downregulated in various malignant tumour tissues, such as lung cancer, liver cancer, and colon cancer (<xref ref-type="bibr" rid="B14">Li et al., 2018</xref>; <xref ref-type="bibr" rid="B12">Jin et al., 2020</xref>; <xref ref-type="bibr" rid="B4">Du et al., 2022</xref>). Such abnormal expression promotes the proliferation of tumour cells and participation in tumour angiogenesis by regulating intercellular adhesion and degrading the intercellular substance.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Chromosome location of ADAMs.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">ADAM</th>
<th align="left">Chromosome location</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">ADAM2</td>
<td align="left">8p11.22</td>
</tr>
<tr>
<td align="left">ADAM7</td>
<td align="left">8p21.2</td>
</tr>
<tr>
<td align="left">ADAM8</td>
<td align="left">10q26.3</td>
</tr>
<tr>
<td align="left">ADAM9</td>
<td align="left">8p11.22</td>
</tr>
<tr>
<td align="left">ADAM10</td>
<td align="left">15q21.3</td>
</tr>
<tr>
<td align="left">ADAM11</td>
<td align="left">17q21.31</td>
</tr>
<tr>
<td align="left">ADAM12</td>
<td align="left">10q26.2</td>
</tr>
<tr>
<td align="left">ADAM15</td>
<td align="left">1q21.3</td>
</tr>
<tr>
<td align="left">ADAM17</td>
<td align="left">2p25.1</td>
</tr>
<tr>
<td align="left">ADAM18</td>
<td align="left">8p11.22</td>
</tr>
<tr>
<td align="left">ADAM19</td>
<td align="left">5q33.3</td>
</tr>
<tr>
<td align="left">ADAM20</td>
<td align="left">14q24.2</td>
</tr>
<tr>
<td align="left">ADAM21</td>
<td align="left">14q24.2</td>
</tr>
<tr>
<td align="left">ADAM22</td>
<td align="left">7q21.12</td>
</tr>
<tr>
<td align="left">ADAM23</td>
<td align="left">2q33.3</td>
</tr>
<tr>
<td align="left">ADAM28</td>
<td align="left">8p21.2</td>
</tr>
<tr>
<td align="left">ADAM29</td>
<td align="left">4q34.1</td>
</tr>
<tr>
<td align="left">ADAM30</td>
<td align="left">1p12</td>
</tr>
<tr>
<td align="left">ADAM32</td>
<td align="left">8p11.22</td>
</tr>
<tr>
<td align="left">ADAM33</td>
<td align="left">20p13</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>In this study, we aimed to investigate the potential effects and mechanisms of ADAM families for pan-cancer analysis across 33 distinct tumours by integrating bulk RNA-seq, tumour mutation burden (TMB), and clinicopathological parameters in The Cancer Genome Atlas (TCGA) datasets. Moreover, we further used ESTIMATE and CIBERSORT to explore the correlation of ADAMs with immune cell infiltration and TME status. Moreover, the sensitivity of distinct FDA-approved drugs to target cancers was also examined through the CellMiner database. Furthermore, as ADAMs were significantly correlated with TME infiltration, the sensitivity of immune checkpoint inhibitor (ICI)-based immunotherapy and the association between the expression of ADAMs and the outcomes of patients treated with ICIs were explored in IMvigor210 and GSE78220 cohorts, and we found that ADAM19 was strikingly correlated with ICI immunotherapy response. Moreover, we also found that ADAMs, especially ADAM9, were strikingly correlated with the sensitivity of FDA-approved drugs. Considering the correlation of all ADAMs with drug sensitivity and immunotherapy response, we finally verified that ADAMs were significantly associated with all types of cancers and might be the novel targets for chemotherapy and immunotherapy.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>2 Materials and methods</title>
<sec id="s2-1">
<title>2.1 Identification of ADAMs in TCGA pan-cancer cohort</title>
<p>RNA-seq (FPKM) gene expression data were downloaded from the open access database UCSC Xena (<ext-link ext-link-type="uri" xlink:href="http://xena.ucsc.edu/">http://xena.ucsc.edu</ext-link>) and were transformed into transcripts per kilobase million (<xref ref-type="bibr" rid="B40">Wagner et al., 2012</xref>). Clinical information of the samples and pathological information, including immune subtypes and stemness scores (RNA-based, RNAss; DNA methylation, DNAss), for all these cancers were also acquired from UCSC Xena (<xref ref-type="bibr" rid="B17">Miao et al., 2020</xref>). For pan-cancer TCGA analysis, a total of 20 ADAM (<xref ref-type="sec" rid="s12">Supplementary Table S1</xref>) expression levels were extracted (<xref ref-type="sec" rid="s12">Supplementary Table S2</xref>), and the differences in para-carcinoma and tumour tissue samples were evaluated using Student&#x2019;s <italic>t</italic>-test. Importantly, the number of normal samples of some cancer types was less than five; hence, these cancer types were excluded to prevent a statistical error. The box plots and heat maps were designed using &#x201c;ggpubr&#x201d; and &#x201c;pheatmap&#x201d; in R. The ADAM internal correlation was performed using &#x201c;corrplot&#x201d; in R.</p>
</sec>
<sec id="s2-2">
<title>2.2 Survival analyses of ADAMs in pan-cancers</title>
<p>Kaplan&#x2013;Meier survival curves and log-rank test (<italic>p</italic>-value cut-off point 0.05) were used for the survival analysis. The cut-off was selected based on the average expression level of ADAMs in each tumour sample, and the patients were divided into high-expression and low-expression groups. Survival curves were plotted using the R packages &#x201c;survminer&#x201d; and &#x201c;survival.&#x201d; Furthermore, Cox analysis was performed to determine the relationship between ADAMs and cancer prognosis. Finally, the forest plot was drawn using the R packages &#x201c;survival&#x201d; and &#x201c;forestplot.&#x201d;</p>
</sec>
<sec id="s2-3">
<title>2.3 Correlation of ADAMs with the TME and stemness score in pan-cancers</title>
<p>The stromal scores and immune cell scores were calculated using &#x201c;ESTIMATE&#x201d; and &#x201c;limma&#x201d; in R for evaluating the stromal cell and immune cell infiltrating levels. Spearman&#x2019;s correlations were used to analyse the correlation between ADAMs and RNAss/DNAss, and the R package &#x201c;corrplot&#x201d; was used to visualise the results.</p>
</sec>
<sec id="s2-4">
<title>2.4 Correlation of ADAMs with chemotherapy-related drug sensitivity and the immune subtype</title>
<p>We acquired the chemotherapy-related drug sensitivity data from an open access database CellMiner (<ext-link ext-link-type="uri" xlink:href="https://discover.nci.nih.gov/cellminer/loadDownload.do">https://discover.nci.nih.gov/cellminer/loadDownload.do</ext-link>). Moreover, &#x201c;limma&#x201d; and &#x201c;ggplot2&#x201d; were used for data analysis and visualisation. Th immune subtypes of the samples were acquired from UCSC Xena. Furthermore, the correlation between immune subtypes and ADAMs was analysed by &#x201c;limma&#x201d; and &#x201c;reshape2&#x201d; in R.</p>
</sec>
<sec id="s2-5">
<title>2.5 Correlation of ADAMs and immunotherapy</title>
<p>The immunotherapy data were obtained from the IMvigor210 and GSE78220 datasets. The treatment outcomes are shown in <xref ref-type="sec" rid="s12">Supplementary Table S3</xref>. Visualisation and response analysis of the result were processed using &#x201c;ggpubr,&#x201d; &#x201c;ggplot2,&#x201d; and &#x201c;limma&#x201d; in R.</p>
</sec>
<sec id="s2-6">
<title>2.6 Correlation of ADAM19 with TMB, microsatellite instability, and immune activation-related genes</title>
<p>The TMB and microsatellite instability (MSI) were calculated using TCGA somatic mutation data. A radar legend was established to show the relationship between ADAM19 and the TMB and MSI using Spearman&#x2019;s correlation analysis. Additionally, the co-expression of ADAM19 and immune activation-related genes was further analysed.</p>
</sec>
<sec id="s2-7">
<title>2.7 Tissue specimens and immunohistochemistry</title>
<p>We collected 18 paired KIRC and BLCA samples from Beijing Friendship Hospital, Capital Medical University (Beijing, China), between June 2022 and October 2022. The Institutional Research Ethics Committee approved the sample collection (No. 2021-P2-159). All samples were pathologically confirmed to be KIRC or BLCA. The antibody of ADAM9 was acquired from ABclonal (A22058, Wuhan, China).</p>
</sec>
<sec id="s2-8">
<title>2.8 Total RNA extraction, reverse transcription, and quantitative real-time polymerase chain reaction</title>
<p>The RNeasy Plus Mini Kits (74136, QIAGEN, Germany) were used to extract the total RNA of the samples. Subsequently, the quality of the extracted RNA was examined using NanoDrop (NP80, Implen, Germany). Following this, the ReverTra Ace qPCR RT Kit (FSQ-201, TOYOBO, Japan) was used for further cDNA synthesis. Finally, reverse and forward primers designed by us and iQ<sup>TM</sup> SYBR<sup>&#xae;</sup> Green Supermix (1708880, Bio-Rad, United States) were mixed to perform qRT-PCR. The expression of the targeted genes was normalised using the expression of GAPDH (<xref ref-type="bibr" rid="B30">Schmittgen and Livak, 2008</xref>).</p>
</sec>
<sec id="s2-9">
<title>2.9 Statistical analyses</title>
<p>Statistical significance between two groups was tested using Student&#x2019;s <italic>t</italic>-test. For variables that fall into more than three groups, a one-way analysis of variance or the Kruskal&#x2013;Wallis test was used, depending on the type of data. Kaplan&#x2013;Meier (KM) curves were used to calculate and visualise the survival rates, and the log-rank test was used to test whether differences were significant. Correlation coefficients were calculated using Spearman&#x2019;s correlation analysis. A univariate Cox proportional hazards model was used to determine the timing of the variables and whether they were independent predictors. Statistical significance was set at <italic>p</italic> &#x3c; 0.05.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>3 Results</title>
<sec id="s3-1">
<title>3.1 The landscape of ADAMs in the pan-cancer cohort</title>
<p>
<xref ref-type="fig" rid="F1">Figure 1A</xref> displays the expression of ADAMs in 33 types of cancers. Moreover, a series of genes in ADAMs, namely, ADAM8, ADAM9, ADAM10, ADAM11, ADAM12, ADAM17, ADAM19, ADAM21, ADAM22, ADAM23, ADAM28, ADAM32, and ADAM33, were highly expressed among all types of cancers. Additionally, the correlation between different ADAMs was also explored (<xref ref-type="fig" rid="F1">Figure 1B</xref>), with ADAM8 and ADAM22 exhibiting the most significant positive correlation, whereas ADAM9 and ADAM10/ADAM17 exhibiting the most negative correlation. We further explored the expression of all ADAMs in 33 cancers (<xref ref-type="fig" rid="F1">Figure 1C</xref>). ADAM9 was observed to be highly expressed in CHOL, whereas ADAM33 had a significantly lower expression in pan-cancers, especially in BLCA and UCEC (<xref ref-type="fig" rid="F1">Figure 1C</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Expression levels and correlations of ADAM family genes in different types of cancer in TCGA. <bold>(A)</bold> Over-expression or under-expression of the ADAM family in various types of cancer. <bold>(B)</bold> Expression data from TCGA showing the ADAM family expressed in different types of cancer. The colour of each small rectangle represents high or low expression of ADAM family genes in each cancer. Red and green colours indicate high and low expression, respectively. <bold>(C)</bold> Correlations between ADAM family genes. Blue dots represent positive correlations, and red dots represent negative correlations. ACC, adrenocortical carcinoma; BLCA, bladder urothelial carcinoma; BRCA, breast invasive carcinoma; CESC, cervical squamous cell carcinoma and endocervical adenocarcinoma; CHOL, cholangiocarcinoma; COAD, colon adenocarcinoma; DLBC, diffuse large B-cell lymphoma; ESCA, oesophageal carcinoma; GBM, glioblastoma multiforme; HNSC, head and neck squamous cell carcinoma; KICH, kidney chromophobe; KIRC, kidney renal clear cell carcinoma; KIRP, kidney renal papillary cell carcinoma; LAML, acute myeloid leukaemia; LGG, brain lower-grade glioma; LIHC, liver hepatocellular carcinoma; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; MESO, mesothelioma; OV, ovarian serous cystadenocarcinoma; PAAD, pancreatic adenocarcinoma; PRAD, prostate adenocarcinoma; READ, rectum adenocarcinoma; SKCM, skin cutaneous melanoma; STAD, stomach adenocarcinoma; TGCA, testicular germ-cell tumour; THCA, thyroid carcinoma; THYM, thymoma; UCEC, uterine corpus endometrial carcinoma; UVM, uveal melanoma.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g001.tif"/>
</fig>
<p>We also extracted the expression of ADAMs in TCGA database using R software, and the resultant expression is presented in <xref ref-type="sec" rid="s12">Supplementary Table S2</xref>. ADAMs were differentially expressed among all cancers and para-carcinoma tissues (<xref ref-type="fig" rid="F2">Figure 2</xref>; <xref ref-type="sec" rid="s12">Supplementary Figure S1</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>ADAM family expression levels in different cancer and para-carcinoma tissues. <bold>(A)</bold> Differential expression of ADAM2, <bold>(B)</bold> differential expression of ADAM7, <bold>(C)</bold> differential expression of ADAM8, <bold>(D)</bold> differential expression of ADAM9, <bold>(E)</bold> differential expression of ADAM10, <bold>(F)</bold> differential expression of ADAM11, <bold>(G)</bold> differential expression of ADAM12, <bold>(H)</bold> differential expression of ADAM15, <bold>(I)</bold> differential expression of ADAM17, <bold>(J)</bold> differential expression of ADAM18, <bold>(K)</bold> differential expression of ADAM19, and <bold>(L)</bold> differential expression of ADAM20. The red rectangle box represents gene expression levels in tumour tissue, and the blue rectangle box represents normal tissue. &#x2a;<italic>p</italic> &#x3c; 0.05, &#x2a;&#x2a;<italic>p</italic> &#x3c; 0.01, and &#x2a;&#x2a;&#x2a;<italic>p</italic> &#x3c; 0.001. Cancer names in red indicate high expression, and cancer names in blue indicate low expression of the corresponding ADAM family gene.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g002.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>3.2 Correlation of ADAMs and prognosis in the pan-cancer cohort</title>
<p>The number of normal samples of some cancer types was less than five in our study; hence, these cancers were excluded to prevent a statistical error, and a total of 28 cancers were contained in this study. We subsequently analysed the correlation between the expression of ADAMs and prognostic data. The Kaplan&#x2013;Meier survival curves of ADAM9 and ADAM19 are shown in <xref ref-type="fig" rid="F3">Figure 3</xref>, and the <italic>p</italic>-values of the survival analysis of other ADAMs are listed in <xref ref-type="sec" rid="s12">Supplementary Table S4</xref>. Among the analysed ADAMs, ADAM9 had a negative effect on BLCA (N &#x3d; 406, <italic>p</italic> &#x3d; 0.042; <xref ref-type="fig" rid="F3">Figure 3A</xref>), CESC (N &#x3d; 293, <italic>p</italic> &#x3d; 0.009; <xref ref-type="fig" rid="F3">Figure 3B</xref>), KICH (N &#x3d; 64, <italic>p</italic> &#x3d; 0.009; <xref ref-type="fig" rid="F3">Figure 3C</xref>), LGG (N &#x3d; 524, <italic>p</italic> &#x3c; 0.001; <xref ref-type="fig" rid="F3">Figure 3D</xref>), LIHC (N &#x3d; 368, <italic>p</italic> &#x3c; 0.001; <xref ref-type="fig" rid="F3">Figure 3E</xref>), MESO (N &#x3d; 84, <italic>p</italic> &#x3d; 0.005; <xref ref-type="fig" rid="F3">Figure 3F</xref>), PAAD (N &#x3d; 177, <italic>p</italic> &#x3c; 0.001; <xref ref-type="fig" rid="F3">Figure 3G</xref>), and THYM (N &#x3d; 118, <italic>p</italic> &#x3d; 0.019; <xref ref-type="fig" rid="F3">Figure 3H</xref>). Furthermore, ADAM19 also had a negative effect on ACC (N &#x3d; 79, <italic>p</italic> &#x3d; 0.028; <xref ref-type="fig" rid="F3">Figure 3I</xref>), KIRP (N &#x3d; 286, <italic>p</italic> &#x3d; 0.034; <xref ref-type="fig" rid="F3">Figure 3J</xref>), LGG (N &#x3d; 524, <italic>p</italic> &#x3c; 0.001; <xref ref-type="fig" rid="F3">Figure 3K</xref>), LIHC (N &#x3d; 368, <italic>p</italic> &#x3d; 0.039; <xref ref-type="fig" rid="F3">Figure 3L</xref>), MESO (N &#x3d; 84, <italic>p</italic> &#x3d; 0.002; <xref ref-type="fig" rid="F3">Figure 3M</xref>), and UVM (N &#x3d; 80, <italic>p</italic> &#x3c; 0.001; <xref ref-type="fig" rid="F3">Figure 3O</xref>), while ADAM19 appeared to induce a protective effect on SKCM (N &#x3d; 457, <italic>p</italic> &#x3d; 0.023; <xref ref-type="fig" rid="F3">Figure 3N</xref>). Furthermore, we investigated the prognostic risk of ADAMs in pan-cancers using Cox regression analysis, which revealed results consistent with that of the Kaplan&#x2013;Meier survival curves (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Kaplan&#x2013;Meier survival curve comparison of high/low expression of ADAM family genes in pan-cancer. <bold>(A)</bold> Survival curves of ADAM9 in BLCA (N &#x3d; 406), <bold>(B)</bold> survival curves of ADAM9 in CESC (N &#x3d; 293), <bold>(C)</bold> survival curves of ADAM9 in KICH (N &#x3d; 64), <bold>(D)</bold> survival curves of ADAM9 in LGG (N &#x3d; 524), <bold>(E)</bold> survival curves of ADAM9 in LIHC (N &#x3d; 368), <bold>(F)</bold> survival curves of ADAM9 in MESO (N &#x3d; 84), <bold>(G)</bold> survival curves of ADAM9 in PAAD (N &#x3d; 177), <bold>(H)</bold> survival curves of ADAM9 in THYM (N &#x3d; 118), <bold>(I)</bold> survival curves of ADAM19 in ACC (N &#x3d; 79), <bold>(J)</bold> survival curves of ADAM19 in KIRP (N &#x3d; 286), <bold>(K)</bold> survival curves of ADAM19 in LGG (N &#x3d; 524), <bold>(L)</bold> survival curves of ADAM19 in LIHC (N &#x3d; 368), <bold>(M)</bold> survival curves of ADAM19 in MESO (N &#x3d; 84), <bold>(N)</bold> survival curves of ADAM19 in SKCM (N &#x3d; 457), and <bold>(O)</bold> survival curves of ADAM19 in UVM (N &#x3d; 80).</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g003.tif"/>
</fig>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Cox regression analysis of the correlation between ADAM family expression and survival. Lines with different colours represent the risk values for different genes within the tumour, with a hazard ratio &#x3c;1 indicating low risk and a hazard ratio &#x3e;1 indicating high risk.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g004.tif"/>
</fig>
</sec>
<sec id="s3-3">
<title>3.3 Association of ADAMs with the TME and stemness score in pan-cancers</title>
<p>We explored the relationship between the expression of ADAMs and the TME in pan-cancers. The immune scores and stromal scores were significantly positively correlated with the expression of ADAMs (<xref ref-type="fig" rid="F5">Figures 5A, B</xref>). Furthermore, significant negative or positive correlations were found between ADAMs and RNAss (<xref ref-type="fig" rid="F5">Figure 5C</xref>). A correlation between ADAMs and DNAss (<xref ref-type="fig" rid="F5">Figure 5D</xref>) was also found in pan-cancers (<xref ref-type="sec" rid="s12">Supplementary Table S5</xref>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Correlation of ADAM family gene expression with the tumour microenvironment and stemness score in pan-cancer. <bold>(A, B)</bold> ADAM family gene expression correlates with various mesenchymal and immune cancer scores. Red dots indicate a positive correlation between tumour gene expression and mesenchymal score, and green dots indicate a negative correlation between tumour gene expression and mesenchymal score. <bold>(C, D)</bold> Correlation of ADAM family expression with RNAss and DNAss in pan-cancer. Red dots indicate a positive correlation between tumour gene expression and immune score, and blue dots indicate a negative correlation between tumour gene expression and immune score.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g005.tif"/>
</fig>
<p>We also revealed the relevance between ADAMs and the stromal score, immune score, stemness score, and ESTIMATE score in certain types of cancer (BLCA and KIRC) (<xref ref-type="fig" rid="F6">Figures 6</xref>, <xref ref-type="fig" rid="F7">7</xref>; <xref ref-type="sec" rid="s12">Supplementary Table S6</xref>) and found that ADAMs had an extensive correlation with the BLCA and KIRC TME as well as DNAss and RNAss.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Correlation analysis of ADAM family gene expression with RNAss, DNAss, stromal score, immune score, and ESTIMATE score in BLCA.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g006.tif"/>
</fig>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Correlation analysis of ADAM family gene expression with RNAss, DNAss, stromal score, immune score, and ESTIMATE score in KIRC.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g007.tif"/>
</fig>
</sec>
<sec id="s3-4">
<title>3.4 Association of ADAMs with immune subtypes in pan-cancers</title>
<p>
<xref ref-type="bibr" rid="B38">Thorsson et al. (2019)</xref> put forward six immune subtypes (C1&#x2013;C6) among 33 pan-cancer types. They performed an extensive immunogenomic analysis of over 10,000 tumours, comprising 33 diverse cancer types and utilising data compiled by TCGA. They identified six immune subtypes: IFN-&#x3b3;-dominant, wound healing, lymphocyte-depleted, inflammatory, TGF-&#x3b2;-dominant, and immunologically quiet, which showed the different characteristics of immune cell infiltration and prognosis. The immune subtypes were significantly associated with tumour prognosis and genetic and immunomodulatory changes. Thus, we further explored the correlation of ADAMs with the immune subtypes and observed that ADAM8, ADAM10, ADAM11, ADAM12, ADAM15, ADAM19, ADAM22, ADAM23, ADAM28, and ADAM33 were differentially expressed in both BRCA and COAD (<xref ref-type="fig" rid="F8">Figure 8</xref>). Additionally, ADAM19 showed a significantly higher expression in C1&#x2013;C3 of BLCA and KIRC, whereas ADAM8 was highly expressed in C6 of BLCA and KIRC. Moreover, the expression of the ADAM family in C5 was generally lower than that in other immune subtypes in KIRC. Thus, ADAMs were correlated with these immune subtypes (<xref ref-type="fig" rid="F8">Figure 8</xref>), which improved the prognostic value and potential clinical use of ADAMs.</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Correlation between ADAM family expression and immune subtypes in BLCA and KIRC. <bold>(A)</bold> ADAM family expression in different immune subtypes in BLCA. <bold>(B)</bold> ADAM family expression in different immune subtypes in KIRC. The X-axis represents the immune subtype, and the Y-axis represents gene expression. C1, wound healing; C2, IFN-&#x3b3;-dominant; C3, inflammatory; C4, lymphocyte-depleted; C5, immunologically quiet; C6, TGF-&#x3b2;-dominant. <italic>p</italic> &#x3c; 0.05; &#x2a;&#x2a;<italic>p</italic> &#x3c; 0.01; &#x2a;&#x2a;&#x2a;<italic>p</italic> &#x3c; 0.001.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g008.tif"/>
</fig>
</sec>
<sec id="s3-5">
<title>3.5 Association of ADAMs with the outcome of chemotherapy and immunotherapy treatments in the pan-cancer cohort</title>
<p>We extracted drug sensitivity data from the CellMiner database to determine the correlation between ADAMs and drug sensitivity. The top 16 drugs showing sensitivity to ADAMs are shown in <xref ref-type="fig" rid="F9">Figure 9</xref> and <xref ref-type="sec" rid="s12">Supplementary Table S7</xref>. Notably, ADAM33 was positively correlated with the sensitivity of nelarabine, chelerythrine, fluphenazine, dexamethasone (Decadron), PX-316, asparaginase, fludarabine, and fenretinide (<xref ref-type="fig" rid="F9">Figures 9A&#x2013;D, G, J, O, P</xref>). Additionally, raloxifene, tamoxifen, and bafetinib were negatively correlated with ADAM9 (<xref ref-type="fig" rid="F9">Figures 9E, F, M</xref>). Furthermore, nelarabine was positively correlated with ADAM22 (<xref ref-type="fig" rid="F9">Figure 9H</xref>); procarbazine and itraconazole shared a positive correlation with ADAM8 (<xref ref-type="fig" rid="F9">Figures 9K, L</xref>); ADAM28 was negatively correlated with ixazomib citrate (<xref ref-type="fig" rid="F9">Figure 9I</xref>); and ADAM17 was negatively correlated with tamoxifen (<xref ref-type="fig" rid="F9">Figure 9N</xref>). ADAM9 was significantly associated with 82 different drug sensitivities, including tamoxifen, cyclophosphamide, oxaliplatin, and bafetinib. Furthermore, ADAM9 showed significantly different expression between tumour and para-carcinoma tissues in KIRC using qRT-PCR analysis (<xref ref-type="fig" rid="F9">Figure 9Q</xref>). The protein expression of ADAM9 in KIRC using immunohistochemistry revealed results consistent with that of qRT-PCR, wherein a significantly higher expression of ADAM9 in tumour tissues was confirmed. However, the differential expression of ADAM9 in BLCA samples was also observed (<xref ref-type="sec" rid="s12">Supplementary Figure S2</xref>).</p>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption>
<p>
<bold>(A&#x2013;P)</bold> Drug sensitivity analysis of the ADAM family gene. The X-axis represents the relative sensitivity with certain drugs, and the Y-axis represents the relative expression of ADAMs. <bold>(Q)</bold> Differential expression of ADAM9 in BLCA and KIRC tissues.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g009.tif"/>
</fig>
<p>We further extracted the expression levels of ADAM19 from the GSE78220 (<xref ref-type="fig" rid="F10">Figure 10A</xref>) and IMvigor210 (<xref ref-type="fig" rid="F10">Figure 10B</xref>) datasets and compared the expression with immune response. ADAM19 was significantly negatively correlated with immunotherapy response.</p>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption>
<p>Correlation of immunotherapy outcome, TMB, MSI, and immune activation-related genes with the expression of ADAM19. <bold>(A)</bold> Expression levels of ADAM19 in GSE78220. <bold>(B)</bold> Expression levels of ADAM19 in IMvigor210 <bold>(C)</bold> The relationship between TMB and ADAM19 expression <bold>(D)</bold> The relationship between MSI and ADAM19 expression <bold>(E)</bold> Co-expression of immune activation genes with ADAM19.</p>
</caption>
<graphic xlink:href="fgene-14-1105900-g010.tif"/>
</fig>
<p>TMB has been recently considered a potential predictive biomarker of immunotherapy (<xref ref-type="bibr" rid="B23">Picard et al., 2020</xref>; <xref ref-type="bibr" rid="B11">Jardim et al., 2021</xref>; <xref ref-type="bibr" rid="B27">Rizzo et al., 2021</xref>). Meanwhile, MSI has also been reported to be correlated with immunotherapy outcomes (<xref ref-type="bibr" rid="B27">Rizzo et al., 2021</xref>). The relationship between TMB and ADAM19 expression was explored (<xref ref-type="fig" rid="F10">Figure 10C</xref>; <xref ref-type="sec" rid="s12">Supplementary Table S8</xref>), and the significant correlation between ADAM19 expression and MSI was detected in various types of cancers, including CHOL, DLBC, ESCA, HNSC, KIRP, LICH, SKCM, STAD, UCEC, and UVM (<xref ref-type="fig" rid="F10">Figure 10D</xref>).</p>
<p>Furthermore, we found the co-expression of immune activation genes and ADAM19 (<xref ref-type="fig" rid="F10">Figure 10E</xref>), revealing a significant correlation of ADAM19 with immune activation genes among almost all 33 types of cancer.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>4 Discussion</title>
<p>Cancer is the leading cause of death globally (<xref ref-type="bibr" rid="B31">Shams-White et al., 2021</xref>; <xref ref-type="bibr" rid="B34">Soerjomataram and Bray, 2021</xref>). In 2022, approximately 4.82 million new cancer cases and 3.21 million cancer-related deaths have been reported in China (<xref ref-type="bibr" rid="B47">Xia et al., 2022</xref>). Since 2000, the number of cancer-related morbidity and mortality along with their incidence has been increasing annually in China (<xref ref-type="bibr" rid="B45">Wei et al., 2020</xref>). Accumulating evidence indicated that proteolytic enzymes, such as MMPs and closely related ADAMs and ADAMTSs, play key roles in cancer initiation and progression (<xref ref-type="bibr" rid="B28">Rocks et al., 2008</xref>). <xref ref-type="bibr" rid="B44">Wei et al. (2019)</xref> reported that the over-expression of ADAM28 in pancreatic cancer was closely correlated with the regulation of gemcitabine resistance. Similarly, <xref ref-type="bibr" rid="B43">Wang et al. (2011)</xref> reported that ADAM10 was significantly associated with lymph node and distant metastasis in gastric cancer. In this study, we focused on the pan-cancer analysis of all ADAMs and explored the differential expression of ADAMs in various types of cancer, as shown in <xref ref-type="table" rid="T1">Table 1</xref>; we found that both ADAM8 and ADAM12 were located at 10q26. In our results, we also found a significant positive correlation between ADAM8 and ADAM12. Similar results were also observed between ADAM21 and ADAM22. <xref ref-type="bibr" rid="B32">Shimura et al. (2015)</xref> revealed that urinary MMP-9/NGAL and urinary ADAM12 are potential non-invasive biomarkers for gastric cancer, including early-stage diseases. <xref ref-type="bibr" rid="B48">Xiao et al. (2012)</xref> reported that ADAM17 was an important contributor to prostate cancer invasion according to the shedding of the EGFR ligand TGF-&#x3b1;, which subsequently activates the EGFR&#x2013;MEK&#x2013;ERK signalling pathway and induces the over-expression of MMP-2 and MMP-9. Furthermore, <xref ref-type="bibr" rid="B13">Karan et al. (2003)</xref> indicated that an inverse expression pattern of ADAM17/TACE and TIMP3 and the regulation of ADAMs with DHT could play an important role in the pathogenesis of prostate cancer. Currently, the most specific therapeutic monoclonal antibody against ADAM17 is D1 (A12), which binds to both the catalytic and disintegrin/cysteine-rich domains of ADAM17 (<xref ref-type="bibr" rid="B35">Tape et al., 2011</xref>). It has been proven to be effective in ovarian cancer cells (<xref ref-type="bibr" rid="B25">Richards et al., 2012</xref>), breast cancer (<xref ref-type="bibr" rid="B1">Caiazza et al., 2015</xref>), and head and neck cancer (<xref ref-type="bibr" rid="B9">Huang et al., 2014</xref>). Additionally, ADAM inhibitors can also effectively assist the therapeutic effect of existing monoclonal antibodies. ADAM10 inhibitors have been reported to be protective against HER2-positive breast cancers, which are resistant to Herceptin (trastuzumab) (<xref ref-type="bibr" rid="B26">Rimawi et al., 2015</xref>).</p>
<p>The role of ADAMs in tumours remains limited, despite the increasing knowledge of the overall role of ADAMs. In our study, significant differential expression of ADAM8, ADAM9, ADAM10, ADAM11, ADAM12, ADAM15, ADAM17, ADAM19, ADAM22, ADAM23, and ADAM33 was observed among almost all types of cancer. ADAM8 was significantly highly expressed in tumour tissue compared with para-cancerous tissue in all types of cancer, except for KIRC, PRAD, and THCA, indicating ADAM8 could be a significant biomarker for tumours. Notably, the correlation of ADAM8 with tumour progression, metastasis, and chemoresistance in various invasive cancers, including pancreatic cancer (<xref ref-type="bibr" rid="B49">Yu et al., 2019</xref>), breast cancer (<xref ref-type="bibr" rid="B3">Conrad et al., 2018</xref>), and lung cancer (<xref ref-type="bibr" rid="B10">Ishikawa et al., 2004</xref>), has been previously reported. Furthermore, ADAM12 was also generally highly expressed in almost all types of tumour tissues. <xref ref-type="bibr" rid="B42">Wang et al. (2021)</xref> reported that ADAM12 inhibition, which was induced by a hypoxia-inducible factor, could effectively downregulate migration and invasion in breast cancer cell lines and also in immuno-deficient mice.</p>
<p>Recently, researchers have been increasingly focusing on the surroundings of solid cancers instead of the tumour itself (<xref ref-type="bibr" rid="B24">Quail and Joyce, 2013</xref>; <xref ref-type="bibr" rid="B46">Wu and Dai, 2017</xref>; <xref ref-type="bibr" rid="B7">Hinshaw and Shevde, 2019</xref>). The surroundings of the cancers are collectively known as the TME which includes immune and stromal cells, and these factors synergistically formed an inflammatory, tumour-promoting, and immuno-suppressive environment which helps cancer cells escape from immune surveillance (<xref ref-type="bibr" rid="B46">Wu and Dai, 2017</xref>). In this study, the ESTIMATE algorithm was used to calculate the immune score and stromal score as well as explore the correlation between these scores and ADAM expression. As shown in <xref ref-type="fig" rid="F5">Figures 5A, B</xref>, ADAM8, 19, and 28 showed a significantly positive correlation with both the immune score and stromal score in pan-cancers, indicating that these genes may play an important role in TME development and could be potential immunotherapy targets. Furthermore, we assessed tumour stemness among different ADAMs in cancers using RNAss and DNAss. These results highlighted the negative effect of ADAMs on characterising cancer cells. Furthermore, as shown in <xref ref-type="fig" rid="F6">Figures 6</xref>, <xref ref-type="fig" rid="F7">7</xref>, a significant positive correlation was observed between ADAM expression, including ADAM8, 9, 12, 19, 23, 28, and 33, whereas ADAM10, 11, and 22 were negatively correlated with the stromal score and immune score.</p>
<p>Although most studies related to ADAM9 focused more on its effect on tumour proliferation, migration, and invasion, various studies have pointed out the value of ADAM9 for tumour drug therapy. In the current study, ADAM9 was significantly associated with 82 different drug sensitivities, including tamoxifen, cyclophosphamide, oxaliplatin, and bafetinib. <xref ref-type="bibr" rid="B15">Liu et al. (2021)</xref> revealed that the cisplatin treatment of non-small-cell lung cancer could be promoted by ADAM9 while being negatively regulated by miR-126-5p. <xref ref-type="bibr" rid="B33">Slapak et al. (2021)</xref> reported a novel ADAM9-responsive, protease-dependent, drug delivery system for patients with pancreatic ductal adenocarcinoma that can reduce the cytotoxicity of systemic chemotherapy. As for the different results of ADAM9 of PCR and immunohistochemistry in BLCA, it happens occasionally. The transcription and translation of eukaryotic genes were differentially expressed; hence, it is also necessary to determine how the protein level changes.</p>
<p>In terms of cancer treatment, monoclonal antibodies also have their niche population. Monoclonal antibodies have a more specific mode of action and thus cause fewer cytotoxic side effects than low-molecular-weight antibodies. In addition, some monoclonal antibodies can exert anti-cancer activity by inducing antibody-dependent cytotoxicity (<xref ref-type="bibr" rid="B19">Mullooly et al., 2016</xref>). Furthermore, in the current study, ADAM19 was negatively correlated with immunotherapy outcomes and strongly correlated with chemotherapy drugs, thus providing a solid theoretical foundation for further research.</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>5 Conclusion</title>
<p>The expression profile of ADAMs in pan-cancers has been demonstrated to correlate with prognosis, tumour microenvironment, treatment outcome, and stemness score. Furthermore, the expression levels of ADAMs in tumour cells are also related to the efficacy of different chemotherapy-related drugs and their response to immunotherapy. These results thus provide a reference for future research on ADAM family genes as potential pan-cancer targets.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/<xref ref-type="sec" rid="s12">Supplementary Material</xref>.</p>
</sec>
<sec id="s7">
<title>Ethics statement</title>
<p>The studies involving human participants were reviewed and approved by the Institutional Research Ethics Committee. The clinical specimens were collected with permission from the Institutional Research Ethics Committee (No. 2021-P2-159). The Ethics Committee waived the requirement of written informed consent for participation.</p>
</sec>
<sec id="s8">
<title>Author contributions</title>
<p>BM and RY made substantial contributions to the conception and design of the research. BM integrated and analysed the data and drafted the manuscript. RY edited the manuscript and provided critical comments. All authors read and approved the final manuscript.</p>
</sec>
<sec id="s9">
<title>Funding</title>
<p>This work was funded by the Beijing Natural Science Foundation (Grant No. 7194279).</p>
</sec>
<ack>
<p>The authors are grateful to The Cancer Genome Atlas Research Network for the clinicopathological and genetic alteration data. They are also thankful to the Urology Department of Beijing Friendship Hospital, Capital Medical University, for their contribution in obtaining the tissue samples of BLCA and KIRC. They also thank Bullet Edits Limited for the linguistic editing and proofreading of the manuscript.</p>
</ack>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s12">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fgene.2023.1105900/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fgene.2023.1105900/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Presentation1.zip" id="SM1" mimetype="application/zip" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="DataSheet1.zip" id="SM2" mimetype="application/zip" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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